https://launchpad.net/ubuntu/+source/gromacs/2018.3-1ubuntu1/+build/15300679 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-021 4.4.0-134-generic #160-Ubuntu SMP Wed Aug 15 14:58:11 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_164 python-lpbuildd_164 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 24 Aug 08:41:33 ntpdate[1798]: adjust time server 10.211.37.1 offset 0.000529 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15300679 /home/buildd/filecache-default/ba8da4cd8f224e5b98b45e770e42ce881cefd998 Creating target for build PACKAGEBUILD-15300679 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15300679 Starting target for build PACKAGEBUILD-15300679 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15300679 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15300679 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15300679 Updating target for build PACKAGEBUILD-15300679 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 Packages [982 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe arm64 Packages [8518 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5063 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 Packages [108 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [59.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 Packages [348 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [175 kB] Fetched 16.2 MB in 5s (2962 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: cpp-8 g++-8 gcc-8 libargon2-1 libasan5 libgcc-8-dev libncurses6 libncursesw6 libprocps7 libstdc++-8-dev libtinfo6 libubsan1 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils build-essential bzip2 cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv init init-system-helpers libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libcryptsetup12 libdb5.3 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libidn11 libidn2-0 libisl19 libitm1 libkmod2 liblsan0 liblz4-1 libmount1 libncurses5 libncursesw5 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libunistring2 libusb-0.1-4 libuuid1 linux-libc-dev make mount multiarch-support ncurses-base ncurses-bin openssl patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 121 upgraded, 12 newly installed, 0 to remove and 0 not upgraded. Need to get 78.7 MB of archives. After this operation, 93.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libc6-dev arm64 2.27-5ubuntu1 [2048 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libc-dev-bin arm64 2.27-5ubuntu1 [58.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 linux-libc-dev arm64 4.17.0-8.9 [995 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgomp1 arm64 8.2.0-4ubuntu1 [69.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 libitm1 arm64 8.2.0-4ubuntu1 [24.4 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8-base arm64 8.2.0-4ubuntu1 [18.3 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc1 arm64 1:8.2.0-4ubuntu1 [34.3 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblsan0 arm64 8.2.0-4ubuntu1 [120 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtsan0 arm64 8.2.0-4ubuntu1 [269 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcc1-0 arm64 8.2.0-4ubuntu1 [36.3 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libatomic1 arm64 8.2.0-4ubuntu1 [9132 B] Get:12 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++6 arm64 8.2.0-4ubuntu1 [373 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libc6 arm64 2.27-5ubuntu1 [2268 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-files arm64 10.1ubuntu6 [60.3 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo6 arm64 6.1+20180210-4ubuntu1 [73.9 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main arm64 debianutils arm64 4.8.6 [84.7 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main arm64 bash arm64 4.4.18-2ubuntu2 [545 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdutils arm64 1:2.32-0.1ubuntu1 [54.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main arm64 tar arm64 1.30+dfsg-2 [214 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 dpkg arm64 1.19.0.5ubuntu4 [1122 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libext2fs2 arm64 1.44.4-2 [152 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 e2fsprogs arm64 1.44.4-2 [490 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 findutils arm64 4.6.0+git+20180808-2 [290 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-bin arm64 6.1+20180210-4ubuntu1 [154 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-modules-5.26 all 5.26.2-7 [2764 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libperl5.26 arm64 5.26.2-7 [3384 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl arm64 5.26.2-7 [202 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 perl-base arm64 5.26.2-7 [1291 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 bzip2 arm64 1.0.6-9 [33.0 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libbz2-1.0 arm64 1.0.6-9 [32.7 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libdb5.3 arm64 5.3.28+dfsg1-0.1 [616 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 sed arm64 4.5-1 [177 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 libuuid1 arm64 2.32-0.1ubuntu1 [18.4 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 libblkid1 arm64 2.32-0.1ubuntu1 [108 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfdisk1 arm64 2.32-0.1ubuntu1 [141 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw6 arm64 6.1+20180210-4ubuntu1 [107 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpcre3 arm64 2:8.39-11 [207 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libselinux1 arm64 2.8-1build1 [57.7 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmount1 arm64 2.32-0.1ubuntu1 [118 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsmartcols1 arm64 2.32-0.1ubuntu1 [73.0 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 fdisk arm64 2.32-0.1ubuntu1 [95.9 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 util-linux arm64 2.32-0.1ubuntu1 [831 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 base-passwd arm64 3.5.45 [45.8 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 init-system-helpers all 1.54 [38.3 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libc-bin arm64 2.27-5ubuntu1 [469 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblz4-1 arm64 1.8.2-1ubuntu1 [75.9 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libudev1 arm64 239-7ubuntu4 [52.3 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapt-pkg5.0 arm64 1.7.0~alpha3 [748 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 debconf all 1.5.69 [121 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 adduser all 3.117ubuntu1 [163 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgpg-error0 arm64 1.32-1 [48.6 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcrypt20 arm64 1.8.3-1ubuntu1 [326 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgv arm64 2.2.8-1ubuntu1 [166 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 libp11-kit0 arm64 0.23.13-2 [175 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgmp10 arm64 2:6.1.2+dfsg-3 [204 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 libunistring2 arm64 0.9.10-1ubuntu1 [370 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn2-0 arm64 2.0.4-2.2 [47.3 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtasn1-6 arm64 4.13-3 [32.1 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgnutls30 arm64 3.5.19-1ubuntu1 [587 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libseccomp2 arm64 2.3.3-3ubuntu1 [34.7 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 apt arm64 1.7.0~alpha3 [1129 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic/main arm64 libapparmor1 arm64 2.12-4ubuntu7 [30.1 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcap-ng0 arm64 0.7.9-1 [10.3 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 libaudit1 arm64 1:2.8.3-1ubuntu2 [36.0 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 libargon2-1 arm64 0~20171227-0.1 [18.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcryptsetup12 arm64 2:2.0.4-2ubuntu1 [131 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkmod2 arm64 25-1ubuntu1 [33.9 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 mount arm64 2.32-0.1ubuntu1 [95.5 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncurses6 arm64 6.1+20180210-4ubuntu1 [80.8 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 libprocps7 arm64 2:3.3.15-2ubuntu1 [29.1 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 procps arm64 2:3.3.15-2ubuntu1 [217 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd arm64 239-7ubuntu4 [2752 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libsystemd0 arm64 239-7ubuntu4 [197 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 init arm64 1.54 [6380 B] Get:77 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 systemd-sysv arm64 239-7ubuntu4 [13.5 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcom-err2 arm64 1.44.4-2 [8784 B] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsepol1 arm64 2.8-1 [207 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage-common all 2.8-1build1 [7000 B] Get:81 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsemanage1 arm64 2.8-1build1 [70.8 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libss2 arm64 1.44.4-2 [10.7 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libncurses5 arm64 6.1+20180210-4ubuntu1 [77.1 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 libncursesw5 arm64 6.1+20180210-4ubuntu1 [96.3 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtinfo5 arm64 6.1+20180210-4ubuntu1 [70.1 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 libidn11 arm64 1.33-2.2ubuntu1 [45.0 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 readline-common all 7.0-5 [52.2 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main arm64 libreadline7 arm64 7.0-5 [106 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 libslang2 arm64 2.3.2-1ubuntu1 [372 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsqlite3-0 arm64 3.24.0-1 [434 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.1 arm64 1.1.0g-2ubuntu5 [914 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssl arm64 1.1.0g-2ubuntu5 [505 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main arm64 tzdata all 2018e-1 [188 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpng16-16 arm64 1.6.34-2 [162 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 multiarch-support arm64 2.27-5ubuntu1 [6916 B] Get:96 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-common arm64 2.31.1-3ubuntu2 [194 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils arm64 2.31.1-3ubuntu2 [3364 B] Get:98 http://ftpmaster.internal/ubuntu cosmic/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-3ubuntu2 [2176 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbinutils arm64 2.31.1-3ubuntu2 [461 kB] Get:100 http://ftpmaster.internal/ubuntu cosmic/main arm64 libisl19 arm64 0.20-2 [520 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-8 arm64 8.2.0-4ubuntu1 [5710 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp arm64 4:8.2.0-1ubuntu1 [27.6 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan5 arm64 8.2.0-4ubuntu1 [337 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan1 arm64 8.2.0-4ubuntu1 [114 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-8-dev arm64 8.2.0-4ubuntu1 [855 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-8 arm64 8.2.0-4ubuntu1 [6464 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc arm64 4:8.2.0-1ubuntu1 [5232 B] Get:108 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-8-dev arm64 8.2.0-4ubuntu1 [1510 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++-8 arm64 8.2.0-4ubuntu1 [6546 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic/main arm64 g++ arm64 4:8.2.0-1ubuntu1 [1588 B] Get:111 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 make arm64 4.2.1-1.2 [154 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 dpkg-dev all 1.19.0.5ubuntu4 [607 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libdpkg-perl all 1.19.0.5ubuntu4 [211 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 patch arm64 2.7.6-3 [99.6 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/main arm64 build-essential arm64 12.5ubuntu2 [4736 B] Get:116 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasan4 arm64 7.3.0-28ubuntu1 [335 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/main arm64 libubsan0 arm64 7.3.0-28ubuntu1 [117 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/universe arm64 g++-7 arm64 7.3.0-28ubuntu1 [6146 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7 arm64 7.3.0-28ubuntu1 [6002 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic/main arm64 libstdc++-7-dev arm64 7.3.0-28ubuntu1 [1465 kB] Get:121 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgcc-7-dev arm64 7.3.0-28ubuntu1 [835 kB] Get:122 http://ftpmaster.internal/ubuntu cosmic/main arm64 cpp-7 arm64 7.3.0-28ubuntu1 [5331 kB] Get:123 http://ftpmaster.internal/ubuntu cosmic/main arm64 gcc-7-base arm64 7.3.0-28ubuntu1 [19.1 kB] Get:124 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 e2fslibs arm64 1.44.4-2 [2700 B] Get:125 http://ftpmaster.internal/ubuntu cosmic/main arm64 pinentry-curses arm64 1.1.0-1build2 [32.4 kB] Get:126 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnpth0 arm64 1.6-1 [7440 B] Get:127 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg arm64 2.2.8-1ubuntu1 [403 kB] Get:128 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpgconf arm64 2.2.8-1ubuntu1 [106 kB] Get:129 http://ftpmaster.internal/ubuntu cosmic/main arm64 gpg-agent arm64 2.2.8-1ubuntu1 [190 kB] Get:130 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libargon2-0 arm64 0~20171227-0.1 [4532 B] Get:131 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcomerr2 arm64 1.44.4-2 [2696 B] Get:132 http://ftpmaster.internal/ubuntu cosmic/main arm64 libusb-0.1-4 arm64 2:0.1.12-32 [15.4 kB] Get:133 http://ftpmaster.internal/ubuntu cosmic/main arm64 pkgbinarymangler all 141 [53.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 78.7 MB in 3s (29.8 MB/s) (Reading database ... 12590 files and directories currently installed.) Preparing to unpack .../0-libc6-dev_2.27-5ubuntu1_arm64.deb ... Unpacking libc6-dev:arm64 (2.27-5ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../1-libc-dev-bin_2.27-5ubuntu1_arm64.deb ... Unpacking libc-dev-bin (2.27-5ubuntu1) over (2.27-3ubuntu1) ... Preparing to unpack .../2-linux-libc-dev_4.17.0-8.9_arm64.deb ... Unpacking linux-libc-dev:arm64 (4.17.0-8.9) over (4.15.0-20.21) ... Preparing to unpack .../3-libgomp1_8.2.0-4ubuntu1_arm64.deb ... Unpacking libgomp1:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../4-libitm1_8.2.0-4ubuntu1_arm64.deb ... Unpacking libitm1:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../5-gcc-8-base_8.2.0-4ubuntu1_arm64.deb ... Unpacking gcc-8-base:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Setting up gcc-8-base:arm64 (8.2.0-4ubuntu1) ... (Reading database ... 12603 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a8.2.0-4ubuntu1_arm64.deb ... Unpacking libgcc1:arm64 (1:8.2.0-4ubuntu1) over (1:8-20180414-1ubuntu2) ... Setting up libgcc1:arm64 (1:8.2.0-4ubuntu1) ... (Reading database ... 12603 files and directories currently installed.) Preparing to unpack .../liblsan0_8.2.0-4ubuntu1_arm64.deb ... Unpacking liblsan0:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libtsan0_8.2.0-4ubuntu1_arm64.deb ... Unpacking libtsan0:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libcc1-0_8.2.0-4ubuntu1_arm64.deb ... Unpacking libcc1-0:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libatomic1_8.2.0-4ubuntu1_arm64.deb ... Unpacking libatomic1:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Preparing to unpack .../libstdc++6_8.2.0-4ubuntu1_arm64.deb ... Unpacking libstdc++6:arm64 (8.2.0-4ubuntu1) over (8-20180414-1ubuntu2) ... Setting up libstdc++6:arm64 (8.2.0-4ubuntu1) ... (Reading database ... 12603 files and directories currently installed.) 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Setting up multiarch-support (2.27-5ubuntu1) ... Setting up tzdata (2018e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Aug 24 08:42:24 UTC 2018. Universal Time is now: Fri Aug 24 08:42:24 UTC 2018. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (239-7ubuntu4) ... Setting up libtsan0:arm64 (8.2.0-4ubuntu1) ... Setting up gpgconf (2.2.8-1ubuntu1) ... Setting up linux-libc-dev:arm64 (4.17.0-8.9) ... Setting up perl-modules-5.26 (5.26.2-7) ... Setting up bzip2 (1.0.6-9) ... Setting up liblsan0:arm64 (8.2.0-4ubuntu1) ... Setting up libargon2-0 (0~20171227-0.1) ... Setting up gcc-7-base:arm64 (7.3.0-28ubuntu1) ... Setting up binutils-common:arm64 (2.31.1-3ubuntu2) ... Setting up patch (2.7.6-3) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... Setting up libperl5.26:arm64 (5.26.2-7) ... Setting up libssl1.1:arm64 (1.1.0g-2ubuntu5) ... Setting up openssl (1.1.0g-2ubuntu5) ... Setting up libsqlite3-0:arm64 (3.24.0-1) ... Setting up pinentry-curses (1.1.0-1build2) ... Setting up libc-dev-bin (2.27-5ubuntu1) ... Setting up libcomerr2:arm64 (1.44.4-2) ... Setting up libc6-dev:arm64 (2.27-5ubuntu1) ... Setting up libslang2:arm64 (2.3.2-1ubuntu1) ... Setting up libasan5:arm64 (8.2.0-4ubuntu1) ... Setting up libusb-0.1-4:arm64 (2:0.1.12-32) ... Setting up libitm1:arm64 (8.2.0-4ubuntu1) ... Setting up libidn11:arm64 (1.33-2.2ubuntu1) ... Setting up gpg (2.2.8-1ubuntu1) ... Setting up libubsan1:arm64 (8.2.0-4ubuntu1) ... Setting up libisl19:arm64 (0.20-2) ... Setting up cpp-8 (8.2.0-4ubuntu1) ... Setting up cpp (4:8.2.0-1ubuntu1) ... Setting up libasan4:arm64 (7.3.0-28ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-3ubuntu2) ... Setting up init (1.54) ... Setting up libubsan0:arm64 (7.3.0-28ubuntu1) ... Setting up gpg-agent (2.2.8-1ubuntu1) ... Setting up libgcc-7-dev:arm64 (7.3.0-28ubuntu1) ... Setting up cpp-7 (7.3.0-28ubuntu1) ... Setting up libstdc++-7-dev:arm64 (7.3.0-28ubuntu1) ... Setting up perl (5.26.2-7) ... Setting up binutils-aarch64-linux-gnu (2.31.1-3ubuntu2) ... Setting up libgcc-8-dev:arm64 (8.2.0-4ubuntu1) ... Setting up binutils (2.31.1-3ubuntu2) ... Setting up libstdc++-8-dev:arm64 (8.2.0-4ubuntu1) ... Setting up gcc-7 (7.3.0-28ubuntu1) ... Setting up g++-7 (7.3.0-28ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu4) ... Setting up gcc-8 (8.2.0-4ubuntu1) ... Setting up g++-8 (8.2.0-4ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu4) ... Setting up gcc (4:8.2.0-1ubuntu1) ... Setting up g++ (4:8.2.0-1ubuntu1) ... Setting up build-essential (12.5ubuntu2) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15300679 arm64 cosmic-proposed -c chroot:build-PACKAGEBUILD-15300679 --arch=arm64 --dist=cosmic-proposed --nolog gromacs_2018.3-1ubuntu1.dsc Initiating build PACKAGEBUILD-15300679 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-134-generic #160-Ubuntu SMP Wed Aug 15 14:58:11 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-021.buildd +==============================================================================+ | gromacs 2018.3-1ubuntu1 (arm64) 24 Aug 2018 08:42 | +==============================================================================+ Package: gromacs Version: 2018.3-1ubuntu1 Source Version: 2018.3-1ubuntu1 Distribution: cosmic-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/gromacs-Y3qEIr/gromacs-2018.3' with '<>' I: NOTICE: Log filtering will replace 'build/gromacs-Y3qEIr' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15300679/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- gromacs_2018.3-1ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-kyXx0F/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-kyXx0F/apt_archive ./ InRelease Get:2 copy:/<>/resolver-kyXx0F/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-kyXx0F/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-kyXx0F/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-kyXx0F/apt_archive ./ Packages [525 B] Fetched 2858 B in 213503982334601d 7h 0min 15s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 libstdc++-7-dev Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-kyXx0F/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 13601 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev Filtered Build-Depends: chrpath, cmake, debhelper (>= 10), libblas-dev, libboost-dev, libfftw3-dev, liblapack-dev, libmpich-dev (>= 3.0.4-6), libopenmpi-dev (>= 1.10.2-7), libtinyxml-dev, libx11-dev, mpich, openmpi-bin, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-gromacs-dummy' in '/<>/resolver-lehTQJ/apt_archive/sbuild-build-depends-gromacs-dummy.deb'. Ign:1 copy:/<>/resolver-lehTQJ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-lehTQJ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-lehTQJ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-lehTQJ/apt_archive ./ Sources [301 B] Get:5 copy:/<>/resolver-lehTQJ/apt_archive ./ Packages [619 B] Fetched 3039 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install gromacs build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: g++-7 libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-8 groff-base hwloc-nox ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.67-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpsl5 libpthread-stubs0-dev librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1 libwind0-heimdal libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg libcoarrays-dev groff lrzip liblapack-doc libboost-doc libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-serialization1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev libfftw3-doc krb5-doc krb5-user libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils libtinyxml-doc gcj-jdk libx11-doc libxcb-doc m4-doc apparmor less www-browser mpich-doc opencl-icd keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales publicsuffix libsasl2-modules xauth libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils chrpath cmake cmake-data debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base gfortran gfortran-8 groff-base hwloc-nox ibverbs-providers intltool-debian libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas-dev libblas3 libboost-dev libboost1.67-dev libbsd0 libcroco3 libcurl4 libedit2 libelf1 libexpat1 libfftw3-bin libfftw3-dev libfftw3-double3 libfftw3-long3 libfftw3-single3 libfile-stripnondeterminism-perl libgfortran-8-dev libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhwloc-dev libhwloc-plugins libhwloc5 libhx509-5-heimdal libibverbs-dev libibverbs1 libicu60 libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldap-common libltdl-dev libltdl7 liblzo2-2 libmagic-mgc libmagic1 libmpich-dev libmpich12 libnghttp2-14 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1 libpsl5 libpthread-stubs0-dev librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssl1.0.0 libtimedate-perl libtinyxml-dev libtinyxml2.6.2v5 libtool libuv1 libwind0-heimdal libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxml2 m4 man-db mpich ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf sbuild-build-depends-gromacs-dummy x11proto-core-dev x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 120 newly installed, 0 to remove and 0 not upgraded. Need to get 55.6 MB of archives. After this operation, 333 MB of additional disk space will be used. Get:1 copy:/<>/resolver-lehTQJ/apt_archive ./ sbuild-build-depends-gromacs-dummy 0.invalid.0 [952 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxau6 arm64 1:1.0.8-1 [7590 B] Get:3 http://ftpmaster.internal/ubuntu cosmic/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main arm64 groff-base arm64 1.22.3-10 [1152 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpipeline1 arm64 1.5.0-1 [22.0 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main arm64 man-db arm64 2.8.4-2 [1017 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic-mgc arm64 1:5.34-2 [197 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main arm64 libmagic1 arm64 1:5.34-2 [69.5 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main arm64 file arm64 1:5.34-2 [22.9 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main arm64 libelf1 arm64 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1.16-2ubuntu1 [265 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgssapi-krb5-2 arm64 1.16-2ubuntu1 [113 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnuma1 arm64 2.0.11-2.2 [19.6 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpsl5 arm64 0.20.2-1 [48.4 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main arm64 libssl1.0.0 arm64 1.0.2n-1ubuntu6 [724 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxdmcp6 arm64 1:1.1.2-3 [9694 B] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxcb1 arm64 1.13-3 [43.6 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libx11-data all 2:1.6.6-1 [113 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libx11-6 arm64 2:1.6.6-1 [550 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main arm64 openssh-client arm64 1:7.7p1-4 [582 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main arm64 m4 arm64 1.4.18-1 [185 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/main arm64 autoconf all 2.69-11 [322 kB] Get:34 http://ftpmaster.internal/ubuntu cosmic/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 automake all 1:1.16.1-1ubuntu1 [522 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main arm64 autopoint all 0.19.8.1-7 [412 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic/universe arm64 chrpath arm64 0.16-2 [12.1 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main arm64 cmake-data all 3.12.1-1 [1419 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic/main arm64 liblzo2-2 arm64 2.10-0.1 [42.9 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main arm64 libarchive13 arm64 3.2.2-4.2 [265 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-2 [35.4 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-2 [130 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-2 [24.9 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-2 [75.2 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-2 [46.9 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-2 [88.5 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-2 [170 kB] Get:48 http://ftpmaster.internal/ubuntu cosmic/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-2 [13.4 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-2 [79.3 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsasl2-modules-db arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [13.4 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main arm64 libsasl2-2 arm64 2.1.27~101-g0780600+dfsg-3ubuntu2 [43.1 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main arm64 libldap-common all 2.4.46+dfsg-5ubuntu1 [16.6 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main arm64 libldap-2.4-2 arm64 2.4.46+dfsg-5ubuntu1 [131 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnghttp2-14 arm64 1.32.0-1 [68.9 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libcurl4 arm64 7.61.0-1 [199 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic/main arm64 libjsoncpp1 arm64 1.7.4-3 [69.2 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic/main arm64 librhash0 arm64 1.3.6-2 [71.8 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libuv1 arm64 1.22.0-3 [63.4 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main arm64 cmake arm64 3.12.1-1 [2997 kB] Get:61 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtool all 2.4.6-2.1build1 [196 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-autoreconf all 19 [16.1 kB] Get:63 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libarchive-zip-perl all 1.63-1 [84.8 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main arm64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main arm64 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:67 http://ftpmaster.internal/ubuntu cosmic/main arm64 dwz arm64 0.12-2 [68.1 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main arm64 libcroco3 arm64 0.6.12-2 [68.2 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main arm64 gettext arm64 0.19.8.1-7 [852 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main arm64 po-debconf all 1.0.20 [232 kB] Get:72 http://ftpmaster.internal/ubuntu cosmic/main arm64 debhelper all 11.3.2ubuntu1 [883 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran5 arm64 8.2.0-4ubuntu1 [308 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main arm64 libgfortran-8-dev arm64 8.2.0-4ubuntu1 [356 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran-8 arm64 8.2.0-4ubuntu1 [6106 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main arm64 gfortran arm64 4:8.2.0-1ubuntu1 [1364 B] Get:77 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-3-200 arm64 3.4.0-1 [51.5 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnl-route-3-200 arm64 3.4.0-1 [138 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic/main arm64 libibverbs1 arm64 19.0-1 [43.0 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main arm64 ibverbs-providers arm64 19.0-1 [148 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libblas3 arm64 3.8.0-1build1 [89.8 kB] Get:82 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libblas-dev arm64 3.8.0-1build1 [92.3 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost1.67-dev arm64 1.67.0-6 [8362 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic/main arm64 libboost-dev arm64 1.67.0.0ubuntu1 [3140 B] Get:85 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfftw3-double3 arm64 3.3.8-1build1 [379 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfftw3-long3 arm64 3.3.8-1build1 [521 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfftw3-single3 arm64 3.3.8-1build1 [625 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfftw3-bin arm64 3.3.8-1build1 [28.5 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic/main arm64 libfftw3-dev arm64 3.3.8-1build1 [1435 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 liblapack3 arm64 3.8.0-1build1 [1478 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 liblapack-dev arm64 3.8.0-1build1 [1511 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic/main arm64 libltdl7 arm64 2.4.6-2.1build1 [38.1 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main arm64 libltdl-dev arm64 2.4.6-2.1build1 [162 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc5 arm64 1.11.10-3 [85.1 kB] Get:95 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpciaccess0 arm64 0.14-1 [15.5 kB] Get:96 http://ftpmaster.internal/ubuntu cosmic/main arm64 ocl-icd-libopencl1 arm64 2.2.11-1ubuntu1 [29.2 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc-plugins arm64 1.11.10-3 [11.2 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libopenmpi3 arm64 3.1.1.real-7 [2240 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main arm64 libpthread-stubs0-dev arm64 0.3-4 [4078 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libtinyxml2.6.2v5 arm64 2.6.2-4 [28.3 kB] Get:101 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libtinyxml-dev arm64 2.6.2-4 [43.6 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main arm64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:103 http://ftpmaster.internal/ubuntu cosmic/main arm64 x11proto-dev all 2018.4-4 [251 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main arm64 x11proto-core-dev all 2018.4-4 [2620 B] Get:105 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxau-dev arm64 1:1.0.8-1 [9768 B] Get:106 http://ftpmaster.internal/ubuntu cosmic/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [24.1 kB] Get:107 http://ftpmaster.internal/ubuntu cosmic/main arm64 xtrans-dev all 1.3.5-1 [70.5 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libxcb1-dev arm64 1.13-3 [80.5 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic-proposed/main arm64 libx11-dev arm64 2:1.6.6-1 [632 kB] Get:110 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 openmpi-common all 3.1.1.real-7 [144 kB] Get:111 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 openmpi-bin arm64 3.1.1.real-7 [86.4 kB] Get:112 http://ftpmaster.internal/ubuntu cosmic/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:113 http://ftpmaster.internal/ubuntu cosmic/universe arm64 hwloc-nox arm64 1.11.10-3 [143 kB] Get:114 http://ftpmaster.internal/ubuntu cosmic/main arm64 libnuma-dev arm64 2.0.11-2.2 [31.1 kB] Get:115 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libhwloc-dev arm64 1.11.10-3 [150 kB] Get:116 http://ftpmaster.internal/ubuntu cosmic/main arm64 libibverbs-dev arm64 19.0-1 [120 kB] Get:117 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libmpich12 arm64 3.3~b2-7build1 [920 kB] Get:118 http://ftpmaster.internal/ubuntu cosmic/universe arm64 mpich arm64 3.3~b2-7build1 [946 kB] Get:119 http://ftpmaster.internal/ubuntu cosmic/universe arm64 libmpich-dev arm64 3.3~b2-7build1 [1250 kB] Get:120 http://ftpmaster.internal/ubuntu cosmic-proposed/universe arm64 libopenmpi-dev arm64 3.1.1.real-7 [942 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 55.6 MB in 2s (30.6 MB/s) Selecting previously unselected package libxau6:arm64. (Reading database ... 13601 files and directories currently installed.) Preparing to unpack .../000-libxau6_1%3a1.0.8-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.8-1) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../001-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../002-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.3-10_arm64.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../004-libpipeline1_1.5.0-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.4-2_arm64.deb ... Unpacking man-db (2.8.4-2) ... Selecting previously unselected package libmagic-mgc. 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Unpacking libicu60:arm64 (60.2-6ubuntu1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../013-libxml2_2.9.4+dfsg1-7build1_arm64.deb ... Unpacking libxml2:arm64 (2.9.4+dfsg1-7build1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-7_arm64.deb ... Unpacking gettext-base (0.19.8.1-7) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../015-libedit2_3.1-20180525-1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20180525-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../016-libkrb5support0_1.16-2ubuntu1_arm64.deb ... Unpacking libkrb5support0:arm64 (1.16-2ubuntu1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../017-libk5crypto3_1.16-2ubuntu1_arm64.deb ... Unpacking libk5crypto3:arm64 (1.16-2ubuntu1) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../018-libkeyutils1_1.5.9-9.3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.5.9-9.3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../019-libkrb5-3_1.16-2ubuntu1_arm64.deb ... Unpacking libkrb5-3:arm64 (1.16-2ubuntu1) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../020-libgssapi-krb5-2_1.16-2ubuntu1_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.16-2ubuntu1) ... Selecting previously unselected package libnuma1:arm64. Preparing to unpack .../021-libnuma1_2.0.11-2.2_arm64.deb ... Unpacking libnuma1:arm64 (2.0.11-2.2) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../022-libpsl5_0.20.2-1_arm64.deb ... Unpacking libpsl5:arm64 (0.20.2-1) ... Selecting previously unselected package libssl1.0.0:arm64. Preparing to unpack .../023-libssl1.0.0_1.0.2n-1ubuntu6_arm64.deb ... Unpacking libssl1.0.0:arm64 (1.0.2n-1ubuntu6) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../024-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../025-libxcb1_1.13-3_arm64.deb ... Unpacking libxcb1:arm64 (1.13-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../026-libx11-data_2%3a1.6.6-1_all.deb ... Unpacking libx11-data (2:1.6.6-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../027-libx11-6_2%3a1.6.6-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.6.6-1) ... Selecting previously unselected package openssh-client. Preparing to unpack .../028-openssh-client_1%3a7.7p1-4_arm64.deb ... Unpacking openssh-client (1:7.7p1-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../029-libsigsegv2_2.12-2_arm64.deb ... Unpacking libsigsegv2:arm64 (2.12-2) ... Selecting previously unselected package m4. 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Selecting previously unselected package liblzo2-2:arm64. Preparing to unpack .../037-liblzo2-2_2.10-0.1_arm64.deb ... Unpacking liblzo2-2:arm64 (2.10-0.1) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../038-libarchive13_3.2.2-4.2_arm64.deb ... Unpacking libarchive13:arm64 (3.2.2-4.2) ... Selecting previously unselected package libroken18-heimdal:arm64. Preparing to unpack .../039-libroken18-heimdal_7.5.0+dfsg-2_arm64.deb ... Unpacking libroken18-heimdal:arm64 (7.5.0+dfsg-2) ... Selecting previously unselected package libasn1-8-heimdal:arm64. Preparing to unpack .../040-libasn1-8-heimdal_7.5.0+dfsg-2_arm64.deb ... Unpacking libasn1-8-heimdal:arm64 (7.5.0+dfsg-2) ... Selecting previously unselected package libheimbase1-heimdal:arm64. Preparing to unpack .../041-libheimbase1-heimdal_7.5.0+dfsg-2_arm64.deb ... Unpacking libheimbase1-heimdal:arm64 (7.5.0+dfsg-2) ... Selecting previously unselected package libhcrypto4-heimdal:arm64. 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Setting up libicu60:arm64 (60.2-6ubuntu1) ... Setting up libmpich12:arm64 (3.3~b2-7build1) ... Setting up libtinyxml2.6.2v5:arm64 (2.6.2-4) ... Setting up libarchive-zip-perl (1.63-1) ... Setting up libssl1.0.0:arm64 (1.0.2n-1ubuntu6) ... Setting up libnghttp2-14:arm64 (1.32.0-1) ... Setting up libtinyxml-dev:arm64 (2.6.2-4) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsigsegv2:arm64 (2.12-2) ... Setting up libldap-common (2.4.46+dfsg-5ubuntu1) ... Setting up libpthread-stubs0-dev:arm64 (0.3-4) ... Setting up libuv1:arm64 (1.22.0-3) ... Setting up libpsl5:arm64 (0.20.2-1) ... Setting up libnuma1:arm64 (2.0.11-2.2) ... Setting up libelf1:arm64 (0.170-0.5) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:arm64 (2.57.2-2) ... No schema files found: doing nothing. Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libsasl2-modules-db:arm64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up libsasl2-2:arm64 (2.1.27~101-g0780600+dfsg-3ubuntu2) ... Setting up gettext-base (0.19.8.1-7) ... Setting up cmake-data (3.12.1-1) ... Setting up libpipeline1:arm64 (1.5.0-1) ... Setting up libroken18-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-1) ... Setting up libfftw3-double3:arm64 (3.3.8-1build1) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libkrb5support0:arm64 (1.16-2ubuntu1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7build1) ... Setting up x11proto-dev (2018.4-4) ... Setting up libmagic-mgc (1:5.34-2) ... Setting up libmagic1:arm64 (1:5.34-2) ... Setting up librhash0:arm64 (1.3.6-2) ... Setting up libcroco3:arm64 (0.6.12-2) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libblas3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up openmpi-common (3.1.1.real-7) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:arm64 (1.67.0-6) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libltdl7:arm64 (2.4.6-2.1build1) ... Setting up libpciaccess0:arm64 (0.14-1) ... Setting up libfftw3-single3:arm64 (3.3.8-1build1) ... Setting up libboost-dev:arm64 (1.67.0.0ubuntu1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libnuma-dev:arm64 (2.0.11-2.2) ... Setting up ocl-icd-libopencl1:arm64 (2.2.11-1ubuntu1) ... Setting up libkeyutils1:arm64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:arm64 (3.4.0-1) ... Setting up libfftw3-long3:arm64 (3.3.8-1build1) ... Setting up libgfortran5:arm64 (8.2.0-4ubuntu1) ... Setting up libx11-data (2:1.6.6-1) ... Setting up libxau6:arm64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-7) ... Setting up liblzo2-2:arm64 (2.10-0.1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libk5crypto3:arm64 (1.16-2ubuntu1) ... Setting up libfftw3-bin (3.3.8-1build1) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up libltdl-dev:arm64 (2.4.6-2.1build1) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up gettext (0.19.8.1-7) ... Setting up libblas-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libarchive13:arm64 (3.2.2-4.2) ... Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack3:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libxau-dev:arm64 (1:1.0.8-1) ... Setting up libnl-route-3-200:arm64 (3.4.0-1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.34-2) ... Setting up libhwloc5:arm64 (1.11.10-3) ... Setting up libhx509-5-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libhwloc-plugins:arm64 (1.11.10-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libfftw3-dev:arm64 (3.3.8-1build1) ... Setting up automake (1:1.16.1-1ubuntu1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libkrb5-3:arm64 (1.16-2ubuntu1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up libgfortran-8-dev:arm64 (8.2.0-4ubuntu1) ... Setting up libxcb1:arm64 (1.13-3) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up liblapack-dev:arm64 (3.8.0-1build1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libtool (2.4.6-2.1build1) ... Setting up hwloc-nox (1.11.10-3) ... Setting up libibverbs1:arm64 (19.0-1) ... Setting up mpich (3.3~b2-7build1) ... update-alternatives: using /usr/bin/mpicc.mpich to provide /usr/bin/mpicc (mpi) in auto mode update-alternatives: using /usr/bin/mpirun.mpich to provide /usr/bin/mpirun (mpirun) in auto mode Setting up libopenmpi3:arm64 (3.1.1.real-7) ... Setting up po-debconf (1.0.20) ... Setting up libhwloc-dev:arm64 (1.11.10-3) ... Setting up gfortran-8 (8.2.0-4ubuntu1) ... Setting up libx11-6:arm64 (2:1.6.6-1) ... Setting up libgssapi-krb5-2:arm64 (1.16-2ubuntu1) ... Setting up ibverbs-providers:arm64 (19.0-1) ... Setting up libxcb1-dev:arm64 (1.13-3) ... Setting up libx11-dev:arm64 (2:1.6.6-1) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-2) ... Setting up openssh-client (1:7.7p1-4) ... Setting up libibverbs-dev:arm64 (19.0-1) ... Setting up gfortran (4:8.2.0-1ubuntu1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up openmpi-bin (3.1.1.real-7) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libmpich-dev:arm64 (3.3~b2-7build1) ... Setting up libldap-2.4-2:arm64 (2.4.46+dfsg-5ubuntu1) ... Setting up libopenmpi-dev:arm64 (3.1.1.real-7) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libcurl4:arm64 (7.61.0-1) ... Setting up cmake (3.12.1-1) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up dh-autoreconf (19) ... Setting up sbuild-build-depends-gromacs-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-5ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-134-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-3ubuntu2 dpkg-dev_1.19.0.5ubuntu4 g++-7_7.3.0-28ubuntu1 g++-8_8.2.0-4ubuntu1 gcc-7_7.3.0-28ubuntu1 gcc-8_8.2.0-4ubuntu1 libc6-dev_2.27-5ubuntu1 libstdc++-7-dev_7.3.0-28ubuntu1 libstdc++-8-dev_8.2.0-4ubuntu1 libstdc++6_8.2.0-4ubuntu1 linux-libc-dev_4.17.0-8.9 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-1ubuntu1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1ubuntu6 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.31.1-3ubuntu2 binutils-aarch64-linux-gnu_2.31.1-3ubuntu2 binutils-common_2.31.1-3ubuntu2 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 chrpath_0.16-2 cmake_3.12.1-1 cmake-data_3.12.1-1 coreutils_8.28-1ubuntu1 cpp_4:8.2.0-1ubuntu1 cpp-7_7.3.0-28ubuntu1 cpp-8_8.2.0-4ubuntu1 dash_0.5.8-2.10 debconf_1.5.69 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu4 dpkg-dev_1.19.0.5ubuntu4 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.34-2 findutils_4.6.0+git+20180808-2 g++_4:8.2.0-1ubuntu1 g++-7_7.3.0-28ubuntu1 g++-8_8.2.0-4ubuntu1 gcc_4:8.2.0-1ubuntu1 gcc-7_7.3.0-28ubuntu1 gcc-7-base_7.3.0-28ubuntu1 gcc-8_8.2.0-4ubuntu1 gcc-8-base_8.2.0-4ubuntu1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gfortran_4:8.2.0-1ubuntu1 gfortran-8_8.2.0-4ubuntu1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 hwloc-nox_1.11.10-3 ibverbs-providers_19.0-1 init_1.54 init-system-helpers_1.54 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu7 libapt-pkg5.0_1.7.0~alpha3 libarchive-zip-perl_1.63-1 libarchive13_3.2.2-4.2 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-28ubuntu1 libasan5_8.2.0-4ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-2 libassuan0_2.5.1-2 libatomic1_8.2.0-4ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.31.1-3ubuntu2 libblas-dev_3.8.0-1build1 libblas3_3.8.0-1build1 libblkid1_2.32-0.1ubuntu1 libboost-dev_1.67.0.0ubuntu1 libboost1.67-dev_1.67.0-6 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.27-5ubuntu1 libc-dev-bin_2.27-5ubuntu1 libc6_2.27-5ubuntu1 libc6-dev_2.27-5ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-4ubuntu1 libcom-err2_1.44.4-2 libcomerr2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2ubuntu1 libcurl4_7.61.0-1 libdb5.3_5.3.28+dfsg1-0.1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu4 libedit2_3.1-20180525-1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfftw3-bin_3.3.8-1build1 libfftw3-dev_3.3.8-1build1 libfftw3-double3_3.3.8-1build1 libfftw3-long3_3.3.8-1build1 libfftw3-single3_3.3.8-1build1 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-28ubuntu1 libgcc-8-dev_8.2.0-4ubuntu1 libgcc1_1:8.2.0-4ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libgfortran-8-dev_8.2.0-4ubuntu1 libgfortran5_8.2.0-4ubuntu1 libglib2.0-0_2.57.2-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1ubuntu1 libgomp1_8.2.0-4ubuntu1 libgpg-error0_1.32-1 libgssapi-krb5-2_1.16-2ubuntu1 libgssapi3-heimdal_7.5.0+dfsg-2 libhcrypto4-heimdal_7.5.0+dfsg-2 libheimbase1-heimdal_7.5.0+dfsg-2 libheimntlm0-heimdal_7.5.0+dfsg-2 libhogweed4_3.4-1 libhwloc-dev_1.11.10-3 libhwloc-plugins_1.11.10-3 libhwloc5_1.11.10-3 libhx509-5-heimdal_7.5.0+dfsg-2 libibverbs-dev_19.0-1 libibverbs1_19.0-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.4-2.2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.20-2 libitm1_8.2.0-4ubuntu1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.16-2ubuntu1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu1 libkrb5-26-heimdal_7.5.0+dfsg-2 libkrb5-3_1.16-2ubuntu1 libkrb5support0_1.16-2ubuntu1 liblapack-dev_3.8.0-1build1 liblapack3_3.8.0-1build1 libldap-2.4-2_2.4.46+dfsg-5ubuntu1 libldap-common_2.4.46+dfsg-5ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-4ubuntu1 libltdl-dev_2.4.6-2.1build1 libltdl7_2.4.6-2.1build1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 liblzo2-2_2.10-0.1 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpich-dev_3.3~b2-7build1 libmpich12_3.3~b2-7build1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.32.0-1 libnl-3-200_3.4.0-1 libnl-route-3-200_3.4.0-1 libnpth0_1.6-1 libnuma-dev_2.0.11-2.2 libnuma1_2.0.11-2.2 libopenmpi-dev_3.1.1.real-7 libopenmpi3_3.1.1.real-7 libp11-kit0_0.23.13-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpciaccess0_0.14-1 libpcre3_2:8.39-11 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-1 libpthread-stubs0-dev_0.3-4 libreadline7_7.0-5 librhash0_1.3.6-2 libroken18-heimdal_7.5.0+dfsg-2 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.4-2 libssl1.0.0_1.0.2n-1ubuntu6 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-28ubuntu1 libstdc++-8-dev_8.2.0-4ubuntu1 libstdc++6_8.2.0-4ubuntu1 libsystemd0_239-7ubuntu4 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtinyxml-dev_2.6.2-4 libtinyxml2.6.2v5_2.6.2-4 libtool_2.4.6-2.1build1 libtsan0_8.2.0-4ubuntu1 libubsan0_7.3.0-28ubuntu1 libubsan1_8.2.0-4ubuntu1 libudev1_239-7ubuntu4 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.32-0.1ubuntu1 libuv1_1.22.0-3 libwind0-heimdal_7.5.0+dfsg-2 libx11-6_2:1.6.6-1 libx11-data_2:1.6.6-1 libx11-dev_2:1.6.6-1 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb1_1.13-3 libxcb1-dev_1.13-3 libxdmcp-dev_1:1.1.2-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-8.9 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.2 man-db_2.8.4-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 mpich_3.3~b2-7build1 multiarch-support_2.27-5ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 ocl-icd-libopencl1_2.2.11-1ubuntu1 openmpi-bin_3.1.1.real-7 openmpi-common_3.1.1.real-7 openssh-client_1:7.7p1-4 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1build2 pkgbinarymangler_141 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-gromacs-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7ubuntu4 systemd-sysv_239-7ubuntu4 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 x11proto-core-dev_2018.4-4 x11proto-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Aug 24 08:39:11 2018 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./gromacs_2018.3-1ubuntu1.dsc dpkg-source: info: extracting gromacs in gromacs-2018.3 dpkg-source: info: unpacking gromacs_2018.3.orig.tar.gz dpkg-source: info: unpacking gromacs_2018.3-1ubuntu1.debian.tar.xz dpkg-source: info: applying readme.patch dpkg-source: info: applying copyright-file.patch dpkg-source: info: applying reproducible-builds.patch dpkg-source: info: applying doxygen.patch dpkg-source: info: applying disable-cpuinfotest.patch dpkg-source: info: applying hurd-disable-numa-test.patch dpkg-source: info: applying mdrun-test-timeout.patch dpkg-source: info: applying sphinx-version-detect.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15300679 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15300679 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15300679 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package gromacs dpkg-buildpackage: info: source version 2018.3-1ubuntu1 dpkg-buildpackage: info: source distribution cosmic dpkg-source --before-build gromacs-2018.3 dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh_testdir dh_testroot rm -rf build docs/doxygen/*.pyc dh_clean build-basic build-mpich build-openmpi build-manual configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian debian/rules binary-arch dh_testdir (mkdir -p build/basic; cd build/basic; cmake /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON) -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib/aarch64-linux-gnu/libX11.so -- Looking for XOpenDisplay in /usr/lib/aarch64-linux-gnu/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/aarch64-linux-gnu/libX11.so -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=OFF -DGMX_X11=ON -DBUILD_SHARED_LIBS=ON -DGMX_DOUBLE=ON) -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for XOpenDisplay in /usr/lib/aarch64-linux-gnu/libX11.so -- Looking for XOpenDisplay in /usr/lib/aarch64-linux-gnu/libX11.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/lib/aarch64-linux-gnu/libX11.so -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) (Required is at least version "2.7") -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/mpicc.mpich -- Check for working C compiler: /usr/bin/mpicc.mpich -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich CXX=/usr/bin/mpicxx.mpich cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DMPIEXEC="/usr/bin/mpiexec.mpich" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/mpicc.mpich -- Check for working C compiler: /usr/bin/mpicc.mpich -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- Check for working CXX compiler: /usr/bin/mpicxx.mpich -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success -- Looking for NVIDIA GPUs present in the system -- Could not detect NVIDIA GPUs -- No compatible CUDA toolkit found (v5.0+), disabling native GPU acceleration -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3f, trying generic detection -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3f.so - found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi CXX=/usr/bin/mpicxx.openmpi cmake \ /<> -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_RULE_MESSAGES=OFF -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DCMAKE_SKIP_RPATH=ON -DGMX_EXTERNAL_ZLIB=ON -DGMX_SIMD=ARM_NEON_ASIMD -DGMX_MPI=ON -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" -DMPIEXEC="/usr/bin/mpiexec.openmpi" -DGMX_BUILD_MDRUN_ONLY=ON -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- Check for working CXX compiler: /usr/bin/mpicxx.openmpi -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - found -- Found Threads: TRUE -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test CXX11_SUPPORTED -- Performing Test CXX11_SUPPORTED - Success -- Performing Test CXX11_STDLIB_PRESENT -- Performing Test CXX11_STDLIB_PRESENT - Success CMake Warning at cmake/gmxManageGPU.cmake:57 (message): GPU acceleration is not available in double precision, disabled! Call Stack (most recent call first): CMakeLists.txt:225 (include) -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h -- Looking for include file sys/time.h - found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for nice -- Looking for nice - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Performing Test HAVE_BUILTIN_CLZ -- Performing Test HAVE_BUILTIN_CLZ - Success -- Performing Test HAVE_BUILTIN_CLZLL -- Performing Test HAVE_BUILTIN_CLZLL - Success -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Looking for feenableexcept in m -- Looking for feenableexcept in m - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Success -- Looking for include file mm_malloc.h -- Looking for include file mm_malloc.h - not found -- Looking for include file malloc.h -- Looking for include file malloc.h - found -- Looking for include file xmmintrin.h -- Looking for include file xmmintrin.h - not found -- Checking for _mm_malloc() -- Checking for _mm_malloc() - not supported -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- MPI is not compatible with thread-MPI. Disabling thread-MPI. -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Defaulting to building static libraries -- hwloc version: 1.11.10 -- Found Hwloc: /usr/lib/aarch64-linux-gnu/libhwloc.so (found suitable version "1.11.10", minimum required is "1.5") -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so -- Looking for zlibVersion in /usr/lib/aarch64-linux-gnu/libz.so - found -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build time - 2018-08-24 08:38:27 -- Setting build host - Linux aarch64 -- Detected build CPU vendor - ARM -- Detected build CPU brand - Unknown CPU brand -- Detected build CPU family - 8 -- Detected build CPU model - 0 -- Detected build CPU stepping - 1 -- Detected build CPU features - neon neon_asimd -- Disabling RDTSCP support -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Looking for C++ include regex -- Looking for C++ include regex - found -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test C_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS -- Performing Test CXX_COMPILE_WORKS_WITHOUT_SPECIAL_FLAGS - Success -- Enabling ARM (AArch64) NEON Advanced SIMD instructions using CXX flags: -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- pkg-config could not detect fftw3, trying generic detection -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_plan_r2r_1d in /usr/lib/aarch64-linux-gnu/libfftw3.so - found -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_sse2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx2_128 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_128_fma in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_avx_512 in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_kcvi in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_neon in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_vsx in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_simd_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so -- Looking for fftw_have_altivec in /usr/lib/aarch64-linux-gnu/libfftw3.so - not found -- Using external FFT library - FFTW3 -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/lib/aarch64-linux-gnu/libblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- GROMACS only supports plugins in a build that uses shared libraries, which can be disabled for various reasons. BUILD_SHARED_LIBS=on and a toolchain that supports dynamic linking is required. (Hint: GMX_PREFER_STATIC_LIBS and GMX_BUILD_MDRUN_ONLY can influence the default BUILD_SHARED_LIBS, so if you need plugins, reconsider those choices.) -- Not using dynamic plugins (e.g VMD-supported file formats) -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Performing Test HAS_NO_UNUSED -- Performing Test HAS_NO_UNUSED - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Configuring done -- Generating done -- Build files have been written to: /<>/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j4 -C build/basic make[1]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles /<>/build/basic/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c Scanning dependencies of target view_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<>/src/programs/view/3dview.cpp make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<>/src/programs/mdrun/tests/energyreader.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<>/src/programs/view/buttons.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<>/src/programs/view/dialogs.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<>/src/programs/view/fgrid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<>/src/programs/view/filter.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<>/src/programs/view/logo.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<>/src/programs/view/manager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<>/src/programs/view/molps.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<>/src/programs/view/nleg.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<>/src/programs/view/nmol.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<>/src/programs/view/view.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<>/src/programs/view/xdlgitem.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<>/src/programs/mdrun/tests/terminationhelper.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<>/src/programs/view/xmb.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<>/src/programs/view/xutil.cpp cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target view_objlib cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrun_test_objlib cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/basic' [ 2%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/basic/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<>/src/gromacs/utility/directoryenumerator.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<>/src/gromacs/fileio/vmdio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<>/src/external/vmd_molfile/vmddlopen.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /<>/src/gromacs/gmxana/anadih.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<>/src/gromacs/gmxana/binsearch.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /<>/src/gromacs/gmxana/cmat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /<>/src/gromacs/gmxana/dens_filter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /<>/src/gromacs/gmxana/dlist.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /<>/src/gromacs/gmxana/eigio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /<>/src/gromacs/gmxana/fitahx.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /<>/src/gromacs/gmxana/gmx_anadock.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_anaeig.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /<>/src/gromacs/gmxana/gmx_analyze.cpp /<>/src/gromacs/gmxana/gmx_anadock.cpp: In function ‘int gmx_anadock(int, char**)’: /<>/src/gromacs/gmxana/gmx_anadock.cpp:114:23: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name, "%s_%d.pdb", buf, i+1); ^~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_anadock.cpp:114:23: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_anadock.cpp:43: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /<>/src/gromacs/gmxana/gmx_angle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /<>/src/gromacs/gmxana/gmx_awh.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /<>/src/gromacs/gmxana/gmx_bar.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /<>/src/gromacs/gmxana/gmx_bundle.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /<>/src/gromacs/gmxana/gmx_chi.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /<>/src/gromacs/gmxana/gmx_cluster.cpp /<>/src/gromacs/gmxana/gmx_chi.cpp: In function ‘void histogramming(FILE*, int, gmx_residuetype_t*, int, int, real**, int, t_dlist*, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool, const char*, real, const t_atoms*, gmx_bool, const char*, const gmx_output_env_t*)’: /<>/src/gromacs/gmxana/gmx_chi.cpp:787:44: warning: ‘.xvg’ directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile, "%s-%s.xvg", hisfile, sss[k]); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/gmxana/gmx_chi.cpp:40: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /<>/src/gromacs/gmxana/gmx_clustsize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /<>/src/gromacs/gmxana/gmx_confrms.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /<>/src/gromacs/gmxana/gmx_covar.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /<>/src/gromacs/gmxana/gmx_current.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /<>/src/gromacs/gmxana/gmx_density.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /<>/src/gromacs/gmxana/gmx_densmap.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_densorder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /<>/src/gromacs/gmxana/gmx_dielectric.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /<>/src/gromacs/gmxana/gmx_dipoles.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /<>/src/gromacs/gmxana/gmx_disre.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /<>/src/gromacs/gmxana/gmx_do_dssp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /<>/src/gromacs/gmxana/gmx_dos.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyecoupl.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyndom.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /<>/src/gromacs/gmxana/gmx_editconf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_eneconv.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /<>/src/gromacs/gmxana/gmx_enemat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /<>/src/gromacs/gmxana/gmx_energy.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /<>/src/gromacs/gmxana/gmx_filter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /<>/src/gromacs/gmxana/gmx_genion.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /<>/src/gromacs/gmxana/gmx_genpr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /<>/src/gromacs/gmxana/gmx_gyrate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /<>/src/gromacs/gmxana/gmx_h2order.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /<>/src/gromacs/gmxana/gmx_hbond.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /<>/src/gromacs/gmxana/gmx_helix.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /<>/src/gromacs/gmxana/gmx_helixorient.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_hydorder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /<>/src/gromacs/gmxana/gmx_lie.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_edi.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_ndx.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_mdmat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /<>/src/gromacs/gmxana/gmx_mindist.cpp /<>/src/gromacs/gmxana/gmx_make_ndx.cpp: In function ‘void edit_index(int, const t_atoms*, const real (*)[3], t_blocka*, char***, gmx_bool)’: /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:1437:48: warning: ‘_&_’ directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname, "%s_&_%s", gname1, gname2); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:1432:48: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname, "%s_%s", gname1, gname2); ^~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /<>/src/gromacs/gmxana/gmx_mk_angndx.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /<>/src/gromacs/gmxana/gmx_morph.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /<>/src/gromacs/gmxana/gmx_msd.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmeig.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmens.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmtraj.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /<>/src/gromacs/gmxana/gmx_order.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /<>/src/gromacs/gmxana/gmx_pme_error.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /<>/src/gromacs/gmxana/gmx_polystat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /<>/src/gromacs/gmxana/gmx_potential.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /<>/src/gromacs/gmxana/gmx_principal.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /<>/src/gromacs/gmxana/gmx_rama.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /<>/src/gromacs/gmxana/gmx_rms.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsdist.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotacf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotmat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /<>/src/gromacs/gmxana/gmx_saltbr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /<>/src/gromacs/gmxana/gmx_sans.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /<>/src/gromacs/gmxana/gmx_saxs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /<>/src/gromacs/gmxana/gmx_sham.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /<>/src/gromacs/gmxana/gmx_sigeps.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /<>/src/gromacs/gmxana/gmx_sorient.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /<>/src/gromacs/gmxana/gmx_spatial.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /<>/src/gromacs/gmxana/gmx_spol.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /<>/src/gromacs/gmxana/gmx_tcaf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/gmx_traj.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjcat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjconv.cpp /<>/src/gromacs/gmxana/gmx_traj.cpp: In function ‘int gmx_traj(int, char**)’: /<>/src/gromacs/gmxana/gmx_traj.cpp:738:21: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(sffmt6, "%s%s%s%s%s%s", sffmt, sffmt, sffmt, sffmt, sffmt, sffmt); ^~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_traj.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 24571 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjorder.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /<>/src/gromacs/gmxana/gmx_tune_pme.cpp /<>/src/gromacs/gmxana/gmx_trjconv.cpp: In function ‘int gmx_trjconv(int, char**)’: /<>/src/gromacs/gmxana/gmx_trjconv.cpp:1860:54: warning: ‘%s’ directive output may be truncated writing up to 31 bytes into a region of size between 1 and 256 [-Wformat-truncation=] snprintf(title, 256, "%s%s%s", top_title, timestr, stepstr); ^~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_trjconv.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:35: note: ‘__builtin___snprintf_chk’ output between 1 and 318 bytes into a destination of size 256 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /<>/src/gromacs/gmxana/gmx_vanhove.cpp /<>/src/gromacs/gmxana/gmx_tune_pme.cpp: In function ‘void do_the_tests(FILE*, char**, int, int, int, const char*, t_perf**, int*, int, int, int, gmx_bool, char*, char*, char*, char*, const t_filenm*, int, int, gmx_int64_t, gmx_bool, const char*)’: /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:1176:34: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4082 [-Wformat-overflow=] sprintf(newfilename, "%s_no%d_np%d_npme%d%s", fn, k, nnodes, nPMEnodes, numstring); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 4110) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:1158:34: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4082 [-Wformat-overflow=] sprintf(newfilename, "%s_no%d_np%d_npme%d%s", opt2fn("-bg", nfile, fnm), k, nnodes, nPMEnodes, numstring); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 4110) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /<>/src/gromacs/gmxana/gmx_velacc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /<>/src/gromacs/gmxana/gmx_wham.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /<>/src/gromacs/gmxana/gmx_wheel.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /<>/src/gromacs/gmxana/gmx_xpm2ps.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /<>/src/gromacs/gmxana/hxprops.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /<>/src/gromacs/gmxana/nrama.cpp /<>/src/gromacs/gmxana/gmx_wham.cpp: In function ‘FILE* open_pdo_pipe(const char*, t_UmbrellaOptions*, gmx_bool*)’: /<>/src/gromacs/gmxana/gmx_wham.cpp:1916:25: warning: ‘ -c < ’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer, "%s -c < %s", gunzip, fn); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/gmxana/gmx_wham.cpp:50: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /<>/src/gromacs/gmxana/nsfactor.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /<>/src/gromacs/gmxana/powerspect.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /<>/src/gromacs/gmxana/pp2shift.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /<>/src/gromacs/gmxana/princ.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /<>/src/gromacs/gmxana/sfactor.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /<>/src/gromacs/gmxpreprocess/add_par.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /<>/src/gromacs/gmxpreprocess/calch.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /<>/src/gromacs/gmxpreprocess/convparm.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/fflibutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_ad.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_vsite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/genconf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /<>/src/gromacs/gmxpreprocess/genhydro.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /<>/src/gromacs/gmxpreprocess/gmxcpp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_atomtype.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_nextnb.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /<>/src/gromacs/gmxpreprocess/grompp.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/h_db.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /<>/src/gromacs/gmxpreprocess/hackblock.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /<>/src/gromacs/gmxpreprocess/hizzie.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/insert-molecules.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /<>/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /<>/src/gromacs/gmxpreprocess/nm2type.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2top.cpp /<>/src/gromacs/gmxpreprocess/grompp.cpp: In function ‘int gmx_grompp(int, char**)’: /<>/src/gromacs/gmxpreprocess/grompp.cpp:1628:26: warning: ‘ To ensure good equipartitio...’ directive writing 62 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s To ensure good equipartitioning, we suggest to switch to the %s cutoff-scheme, since that allows for better control over the Verlet buffer size and thus over the energy drift.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/grompp.cpp:52: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 175 or more bytes (assuming 4270) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/grompp.cpp:1619:26: warning: ‘ To ensure good equipartitio...’ directive writing 160 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s To ensure good equipartitioning, you need to either not use constraints on all bonds (but, if possible, only on bonds involving hydrogens) or use integrator = %s or decrease one or more tolerances: verlet-buffer-tolerance <= %g, LINCS iterations >= %d, LINCS order >= %d or SHAKE tolerance <= %g", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/grompp.cpp:1619:26: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/grompp.cpp:52: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 296 or more bytes (assuming 4407) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp: In function ‘int gmx_pdb2gmx(int, char**)’: /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:2214:35: warning: ‘_pr.itp’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn, "%s_pr.itp", buf_fn); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:2308:25: warning: ‘.itp’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(buf_fn, "%s%c%s.itp", ffdir, DIR_SEPARATOR, watermodel); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 4101) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/pgutil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /<>/src/gromacs/gmxpreprocess/read-conformation.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/readir.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /<>/src/gromacs/gmxpreprocess/readpull.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /<>/src/gromacs/gmxpreprocess/readrot.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /<>/src/gromacs/gmxpreprocess/resall.cpp /<>/src/gromacs/gmxpreprocess/readpull.cpp: In function ‘char** read_pullparams(int*, t_inpfile**, pull_params_t*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/readpull.cpp:365:27: warning: ‘ should contain ’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(wbuf, "%s should contain %d pull group indices with geometry %s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readpull.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 52 or more bytes (assuming 4147) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp: In function ‘void set_reference_positions(t_rot*, real (*)[3], real (*)[3], const char*, gmx_bool, warninp_t)’: /<>/src/gromacs/gmxpreprocess/readrot.cpp:269:26: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(reffile, "%s.%d.%s", base, g, extension); ^~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:269:26: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readrot.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 4 and 8203 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:232:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4050 [-Wformat-overflow=] sprintf(warn_buf, "%s Box size in reference file %s differs from actual box size!", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:292:45: check_box_unchanged(f_box, box, reffile, wi); ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readrot.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 77 and 4172 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/solvate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /<>/src/gromacs/gmxpreprocess/specbond.cpp /<>/src/gromacs/gmxpreprocess/specbond.cpp: In function ‘int mk_specbonds(t_atoms*, real (*)[3], gmx_bool, t_ssbond**, gmx_bool)’: /<>/src/gromacs/gmxpreprocess/specbond.cpp:303:34: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:303:34: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/gmxpreprocess/gpp_atomtype.h:41, from /<>/src/gromacs/gmxpreprocess/pdb2top.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:314:34: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:314:34: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/gmxpreprocess/gpp_atomtype.h:41, from /<>/src/gromacs/gmxpreprocess/pdb2top.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/ter_db.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /<>/src/gromacs/gmxpreprocess/tomorse.cpp /<>/src/gromacs/gmxpreprocess/solvate.cpp: In function ‘void update_top(t_atoms*, int, real (*)[3], int, t_filenm*, gmx_atomprop_t)’: /<>/src/gromacs/gmxpreprocess/solvate.cpp:805:34: warning: ‘ in water ’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s in water\n", buf2); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/solvate.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /<>/src/gromacs/gmxpreprocess/topdirs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /<>/src/gromacs/gmxpreprocess/topio.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /<>/src/gromacs/gmxpreprocess/toppush.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_at(t_symtab*, gpp_atomtype_t, t_bond_atomtype, char*, int, t_nbparam***, t_nbparam***, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:492:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4074 [-Wformat-overflow=] sprintf(errbuf, "Invalid particle type %s", ptype); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:530:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] sprintf(errbuf, "Adding atomtype %s failed", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:517:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4076 [-Wformat-overflow=] sprintf(errbuf, "Overriding atomtype %s", type); ^~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:522:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] sprintf(errbuf, "Replacing atomtype %s failed", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 27 and 4122 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /<>/src/gromacs/gmxpreprocess/topshake.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_gb_params(gpp_atomtype_t, char*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1096:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4065 [-Wformat-overflow=] sprintf(errbuf, "Too few gb parameters for type %s\n", atypename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /<>/src/gromacs/gmxpreprocess/toputil.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /<>/src/gromacs/gmxpreprocess/vsite_parm.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_atom(t_symtab*, t_block*, t_atoms*, gpp_atomtype_t, char*, int*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1416:37: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4087 [-Wformat-overflow=] sprintf(errbuf, "Atomtype %s not found", ctypeB); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1288:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4072 [-Wformat-overflow=] sprintf(errbuf, "Invalid residue number '%s' for atom %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1444:39: type, ctype, ptype, resnumberic, ~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 37 and 4142 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1389:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4087 [-Wformat-overflow=] sprintf(errbuf, "Atomtype %s not found", ctype); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_molt(t_symtab*, int*, t_molinfo**, char*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1468:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4083 [-Wformat-overflow=] sprintf(errbuf, "moleculetype %s is redefined", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 27 and 4122 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/x2top.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_mol(int, t_molinfo*, char*, int*, int*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4078 [-Wformat-overflow=] sprintf(errbuf, "For moleculetype '%s' in [ system ] %d case insensitive matches, but %d case sensitive matches were found. Check the case of the characters in the moleculetypes.", type, nrci, nrcs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: note: directive argument in the range [2, 2147483647] /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 158 and 4271 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:2438:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4075 [-Wformat-overflow=] sprintf(errbuf, "No such moleculetype %s", type); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /<>/src/gromacs/gmxpreprocess/xlate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/autocorr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /<>/src/gromacs/correlationfunctions/crosscorr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/expfit.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /<>/src/gromacs/correlationfunctions/gmx_lmcurve.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /<>/src/gromacs/correlationfunctions/integrate.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/manyautocorrelation.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /<>/src/gromacs/correlationfunctions/polynomials.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /<>/src/gromacs/statistics/statistics.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /<>/src/gromacs/analysisdata/abstractdata.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/analysisdata.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/arraydata.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /<>/src/gromacs/analysisdata/dataframe.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /<>/src/gromacs/analysisdata/datamodule.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /<>/src/gromacs/analysisdata/datamodulemanager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /<>/src/gromacs/analysisdata/dataproxy.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /<>/src/gromacs/analysisdata/datastorage.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /<>/src/gromacs/analysisdata/modules/average.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /<>/src/gromacs/analysisdata/modules/displacement.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /<>/src/gromacs/analysisdata/modules/frameaverager.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/histogram.cpp.o -c /<>/src/gromacs/analysisdata/modules/histogram.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/modules/lifetime.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/plot.cpp.o -c /<>/src/gromacs/analysisdata/modules/plot.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/centerofmass.cpp.o -c /<>/src/gromacs/selection/centerofmass.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/poscalc.cpp.o -c /<>/src/gromacs/selection/poscalc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /<>/src/gromacs/selection/position.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_permute.cpp.o -c /<>/src/gromacs/selection/sm_permute.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /<>/src/gromacs/selection/sm_position.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c /<>/src/gromacs/selection/sm_same.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/distance.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/rdf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/sasa.cpp.o -c 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tools/dump.cpp.o -c /<>/src/gromacs/tools/dump.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG 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-I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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&& /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c 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-I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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&& /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 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-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/hostallocator.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<>/src/gromacs/hardware/gpu_hw_info.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/hardwaretopology.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ 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-I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<>/src/gromacs/mdrunutility/mdmodules.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/threadaffinity.cpp.o -c 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/behaviorcollection.cpp.o -c /<>/src/gromacs/options/behaviorcollection.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 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-isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/system_error.cpp.o -c /<>/src/external/thread_mpi/src/system_error.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/alltoall.c.o -c /<>/src/external/thread_mpi/src/alltoall.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_protocol.c.o -c /<>/src/external/thread_mpi/src/p2p_protocol.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /<>/src/external/thread_mpi/src/barrier.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /<>/src/external/thread_mpi/src/p2p_send_recv.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /<>/src/external/thread_mpi/src/bcast.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_wait.c.o -c /<>/src/external/thread_mpi/src/p2p_wait.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/collective.c.o -c /<>/src/external/thread_mpi/src/collective.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /<>/src/external/thread_mpi/src/profile.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /<>/src/external/thread_mpi/src/comm.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /<>/src/external/thread_mpi/src/reduce.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /<>/src/external/thread_mpi/src/event.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /<>/src/external/thread_mpi/src/reduce_fast.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /<>/src/external/thread_mpi/src/gather.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /<>/src/external/thread_mpi/src/scatter.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /<>/src/external/thread_mpi/src/group.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /<>/src/external/thread_mpi/src/tmpi_init.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /<>/src/external/thread_mpi/src/topology.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /<>/src/external/thread_mpi/src/list.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /<>/src/external/thread_mpi/src/type.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<>/src/external/thread_mpi/src/scan.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<>/src/external/thread_mpi/src/numa_malloc.c cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<>/src/external/thread_mpi/src/once.c cd /<>/build/basic/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<>/src/external/lmfit/lmmin.cpp cd /<>/build/basic/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<>/build/basic/src/gromacs/utility/baseversion-gen.c cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs.so.3 -o ../../lib/libgromacs.so.3.3.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/aarch64-linux-gnu/libhwloc.so -ldl -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so -lpthread -fopenmp -lm /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lm cd /<>/build/basic/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs.so.3.3.0 ../../lib/libgromacs.so.3 ../../lib/libgromacs.so make[3]: Leaving directory '/<>/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic /<>/build/basic/share/template /<>/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /<>/src/programs/gmx.cpp Scanning dependencies of target template cd /<>/build/basic/src/programs && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /<>/src/programs/legacymodules.cpp make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic/share/template && /usr/bin/c++ -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /<>/share/template/template.cpp cd /<>/build/basic/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx ../../lib/libgromacs.so.3.3.0 -fopenmp /usr/lib/aarch64-linux-gnu/libX11.so -lm make[3]: Leaving directory '/<>/build/basic' [100%] Built target gmx cd /<>/build/basic/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs.so.3.3.0 -fopenmp -lm make[3]: Leaving directory '/<>/build/basic' [100%] Built target template make[2]: Leaving directory '/<>/build/basic' /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 0 make[1]: Leaving directory '/<>/build/basic' /usr/bin/make -j4 -C build/basic-dp make[1]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles /<>/build/basic-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build Scanning dependencies of target view_objlib make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build Scanning dependencies of target mdrun_test_objlib make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/3dview.cpp.o -c /<>/src/programs/view/3dview.cpp make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o -c /<>/src/programs/mdrun/tests/energyreader.cpp Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/buttons.cpp.o -c /<>/src/programs/view/buttons.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o -c /<>/src/programs/view/dialogs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o -c /<>/src/programs/view/fgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/filter.cpp.o -c /<>/src/programs/view/filter.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/logo.cpp.o -c /<>/src/programs/view/logo.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/manager.cpp.o -c /<>/src/programs/view/manager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/molps.cpp.o -c /<>/src/programs/view/molps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nleg.cpp.o -c /<>/src/programs/view/nleg.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o -c /<>/src/programs/mdrun/tests/mdruncomparisonfixture.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/nmol.cpp.o -c /<>/src/programs/view/nmol.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/popup.cpp.o -c /<>/src/programs/view/popup.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o -c /<>/src/programs/view/pulldown.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/view.cpp.o -c /<>/src/programs/view/view.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/x11.cpp.o -c /<>/src/programs/view/x11.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o -c /<>/src/programs/view/xdlg.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o -c /<>/src/programs/mdrun/tests/moduletest.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o -c /<>/src/programs/view/xdlghi.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o -c /<>/src/programs/view/xdlgitem.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xmb.cpp.o -c /<>/src/programs/view/xmb.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o -c /<>/src/programs/mdrun/tests/terminationhelper.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -c /<>/src/programs/view/xutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target view_objlib cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrun_test_objlib cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/basic-dp' [ 2%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/basic-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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-O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<>/src/gromacs/topology/residuetypes.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<>/src/gromacs/topology/symtab.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<>/src/gromacs/utility/basenetwork.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<>/src/gromacs/utility/baseversion.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<>/src/gromacs/utility/datafilefinder.cpp cd 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/vmdio.cpp.o -c /<>/src/gromacs/fileio/vmdio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/vmd_molfile/vmddlopen.c.o -c /<>/src/external/vmd_molfile/vmddlopen.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/anadih.cpp.o -c /<>/src/gromacs/gmxana/anadih.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/binsearch.cpp.o -c /<>/src/gromacs/gmxana/binsearch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/cmat.cpp.o -c /<>/src/gromacs/gmxana/cmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dens_filter.cpp.o -c /<>/src/gromacs/gmxana/dens_filter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/dlist.cpp.o -c /<>/src/gromacs/gmxana/dlist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/eigio.cpp.o -c /<>/src/gromacs/gmxana/eigio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/fitahx.cpp.o -c /<>/src/gromacs/gmxana/fitahx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anadock.cpp.o -c /<>/src/gromacs/gmxana/gmx_anadock.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_anaeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_anaeig.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_analyze.cpp.o -c /<>/src/gromacs/gmxana/gmx_analyze.cpp /<>/src/gromacs/gmxana/gmx_anadock.cpp: In function ‘int gmx_anadock(int, char**)’: /<>/src/gromacs/gmxana/gmx_anadock.cpp:114:23: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(name, "%s_%d.pdb", buf, i+1); ^~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_anadock.cpp:114:23: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_anadock.cpp:43: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 271 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_angle.cpp.o -c /<>/src/gromacs/gmxana/gmx_angle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_awh.cpp.o -c /<>/src/gromacs/gmxana/gmx_awh.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bar.cpp.o -c /<>/src/gromacs/gmxana/gmx_bar.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_bundle.cpp.o -c /<>/src/gromacs/gmxana/gmx_bundle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_chi.cpp.o -c /<>/src/gromacs/gmxana/gmx_chi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_cluster.cpp.o -c /<>/src/gromacs/gmxana/gmx_cluster.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_clustsize.cpp.o -c /<>/src/gromacs/gmxana/gmx_clustsize.cpp /<>/src/gromacs/gmxana/gmx_chi.cpp: In function ‘void histogramming(FILE*, int, gmx_residuetype_t*, int, int, real**, int, t_dlist*, int*, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool, gmx_bool, const char*, real, const t_atoms*, gmx_bool, const char*, const gmx_output_env_t*)’: /<>/src/gromacs/gmxana/gmx_chi.cpp:787:44: warning: ‘.xvg’ directive writing 4 bytes into a region of size between 0 and 255 [-Wformat-overflow=] sprintf(sshisfile, "%s-%s.xvg", hisfile, sss[k]); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/gmxana/gmx_chi.cpp:40: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 261) into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_confrms.cpp.o -c /<>/src/gromacs/gmxana/gmx_confrms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_covar.cpp.o -c /<>/src/gromacs/gmxana/gmx_covar.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_current.cpp.o -c /<>/src/gromacs/gmxana/gmx_current.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_density.cpp.o -c /<>/src/gromacs/gmxana/gmx_density.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densmap.cpp.o -c /<>/src/gromacs/gmxana/gmx_densmap.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_densorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_densorder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dielectric.cpp.o -c /<>/src/gromacs/gmxana/gmx_dielectric.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dipoles.cpp.o -c /<>/src/gromacs/gmxana/gmx_dipoles.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_disre.cpp.o -c /<>/src/gromacs/gmxana/gmx_disre.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_do_dssp.cpp.o -c /<>/src/gromacs/gmxana/gmx_do_dssp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dos.cpp.o -c /<>/src/gromacs/gmxana/gmx_dos.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyecoupl.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyecoupl.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_dyndom.cpp.o -c /<>/src/gromacs/gmxana/gmx_dyndom.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_editconf.cpp.o -c /<>/src/gromacs/gmxana/gmx_editconf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_eneconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_eneconv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_enemat.cpp.o -c /<>/src/gromacs/gmxana/gmx_enemat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_energy.cpp.o -c /<>/src/gromacs/gmxana/gmx_energy.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_filter.cpp.o -c /<>/src/gromacs/gmxana/gmx_filter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genion.cpp.o -c /<>/src/gromacs/gmxana/gmx_genion.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_genpr.cpp.o -c /<>/src/gromacs/gmxana/gmx_genpr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_gyrate.cpp.o -c /<>/src/gromacs/gmxana/gmx_gyrate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_h2order.cpp.o -c /<>/src/gromacs/gmxana/gmx_h2order.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hbond.cpp.o -c /<>/src/gromacs/gmxana/gmx_hbond.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helix.cpp.o -c /<>/src/gromacs/gmxana/gmx_helix.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_helixorient.cpp.o -c /<>/src/gromacs/gmxana/gmx_helixorient.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_hydorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_hydorder.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_lie.cpp.o -c /<>/src/gromacs/gmxana/gmx_lie.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_edi.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_edi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_make_ndx.cpp.o -c /<>/src/gromacs/gmxana/gmx_make_ndx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mdmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_mdmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mindist.cpp.o -c /<>/src/gromacs/gmxana/gmx_mindist.cpp /<>/src/gromacs/gmxana/gmx_make_ndx.cpp: In function ‘void edit_index(int, const t_atoms*, const real (*)[3], t_blocka*, char***, gmx_bool)’: /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:1437:48: warning: ‘_&_’ directive writing 3 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(gname, "%s_&_%s", gname1, gname2); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 4 and 8194 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:1432:48: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(gname, "%s_%s", gname1, gname2); ^~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_make_ndx.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 8192 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_mk_angndx.cpp.o -c /<>/src/gromacs/gmxana/gmx_mk_angndx.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_morph.cpp.o -c /<>/src/gromacs/gmxana/gmx_morph.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_msd.cpp.o -c /<>/src/gromacs/gmxana/gmx_msd.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmeig.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmeig.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmens.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmens.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmr.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_nmtraj.cpp.o -c /<>/src/gromacs/gmxana/gmx_nmtraj.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_order.cpp.o -c /<>/src/gromacs/gmxana/gmx_order.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_pme_error.cpp.o -c /<>/src/gromacs/gmxana/gmx_pme_error.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_polystat.cpp.o -c /<>/src/gromacs/gmxana/gmx_polystat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_potential.cpp.o -c /<>/src/gromacs/gmxana/gmx_potential.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_principal.cpp.o -c /<>/src/gromacs/gmxana/gmx_principal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rama.cpp.o -c /<>/src/gromacs/gmxana/gmx_rama.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rms.cpp.o -c /<>/src/gromacs/gmxana/gmx_rms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsdist.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsdist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rmsf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rmsf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotacf.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotacf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_rotmat.cpp.o -c /<>/src/gromacs/gmxana/gmx_rotmat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saltbr.cpp.o -c /<>/src/gromacs/gmxana/gmx_saltbr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sans.cpp.o -c /<>/src/gromacs/gmxana/gmx_sans.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_saxs.cpp.o -c /<>/src/gromacs/gmxana/gmx_saxs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sham.cpp.o -c /<>/src/gromacs/gmxana/gmx_sham.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sigeps.cpp.o -c /<>/src/gromacs/gmxana/gmx_sigeps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_sorient.cpp.o -c /<>/src/gromacs/gmxana/gmx_sorient.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spatial.cpp.o -c /<>/src/gromacs/gmxana/gmx_spatial.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_spol.cpp.o -c /<>/src/gromacs/gmxana/gmx_spol.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tcaf.cpp.o -c /<>/src/gromacs/gmxana/gmx_tcaf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/gmx_traj.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjcat.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjcat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjconv.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_trjorder.cpp.o -c /<>/src/gromacs/gmxana/gmx_trjorder.cpp /<>/src/gromacs/gmxana/gmx_traj.cpp: In function ‘int gmx_traj(int, char**)’: /<>/src/gromacs/gmxana/gmx_traj.cpp:738:21: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(sffmt6, "%s%s%s%s%s%s", sffmt, sffmt, sffmt, sffmt, sffmt, sffmt); ^~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_traj.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 24571 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_tune_pme.cpp.o -c /<>/src/gromacs/gmxana/gmx_tune_pme.cpp /<>/src/gromacs/gmxana/gmx_trjconv.cpp: In function ‘int gmx_trjconv(int, char**)’: /<>/src/gromacs/gmxana/gmx_trjconv.cpp:1860:54: warning: ‘%s’ directive output may be truncated writing up to 31 bytes into a region of size between 1 and 256 [-Wformat-truncation=] snprintf(title, 256, "%s%s%s", top_title, timestr, stepstr); ^~~~~~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxana/gmx_trjconv.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:35: note: ‘__builtin___snprintf_chk’ output between 1 and 318 bytes into a destination of size 256 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_vanhove.cpp.o -c /<>/src/gromacs/gmxana/gmx_vanhove.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_velacc.cpp.o -c /<>/src/gromacs/gmxana/gmx_velacc.cpp /<>/src/gromacs/gmxana/gmx_tune_pme.cpp: In function ‘void do_the_tests(FILE*, char**, int, int, int, const char*, t_perf**, int*, int, int, int, gmx_bool, char*, char*, char*, char*, const t_filenm*, int, int, gmx_int64_t, gmx_bool, const char*)’: /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:1176:34: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4082 [-Wformat-overflow=] sprintf(newfilename, "%s_no%d_np%d_npme%d%s", fn, k, nnodes, nPMEnodes, numstring); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 4110) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:1158:34: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4082 [-Wformat-overflow=] sprintf(newfilename, "%s_no%d_np%d_npme%d%s", opt2fn("-bg", nfile, fnm), k, nnodes, nPMEnodes, numstring); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/gmxana/gmx_tune_pme.cpp:45: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 15 or more bytes (assuming 4110) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wham.cpp.o -c /<>/src/gromacs/gmxana/gmx_wham.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_wheel.cpp.o -c /<>/src/gromacs/gmxana/gmx_wheel.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/gmx_xpm2ps.cpp.o -c /<>/src/gromacs/gmxana/gmx_xpm2ps.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/hxprops.cpp.o -c /<>/src/gromacs/gmxana/hxprops.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nrama.cpp.o -c /<>/src/gromacs/gmxana/nrama.cpp /<>/src/gromacs/gmxana/gmx_wham.cpp: In function ‘FILE* open_pdo_pipe(const char*, t_UmbrellaOptions*, gmx_bool*)’: /<>/src/gromacs/gmxana/gmx_wham.cpp:1916:25: warning: ‘ -c < ’ directive writing 6 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(Buffer, "%s -c < %s", gunzip, fn); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/gmxana/gmx_wham.cpp:50: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 7 or more bytes (assuming 1030) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/nsfactor.cpp.o -c /<>/src/gromacs/gmxana/nsfactor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/powerspect.cpp.o -c /<>/src/gromacs/gmxana/powerspect.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/pp2shift.cpp.o -c /<>/src/gromacs/gmxana/pp2shift.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/princ.cpp.o -c /<>/src/gromacs/gmxana/princ.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxana/sfactor.cpp.o -c /<>/src/gromacs/gmxana/sfactor.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/add_par.cpp.o -c /<>/src/gromacs/gmxpreprocess/add_par.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/calch.cpp.o -c /<>/src/gromacs/gmxpreprocess/calch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/convparm.cpp.o -c /<>/src/gromacs/gmxpreprocess/convparm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/fflibutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/fflibutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_ad.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_ad.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_maxwell_velocities.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_maxwell_velocities.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gen_vsite.cpp.o -c /<>/src/gromacs/gmxpreprocess/gen_vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/genconf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/genhydro.cpp.o -c /<>/src/gromacs/gmxpreprocess/genhydro.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gmxcpp.cpp.o -c /<>/src/gromacs/gmxpreprocess/gmxcpp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_atomtype.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_bond_atomtype.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_bond_atomtype.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/gpp_nextnb.cpp.o -c /<>/src/gromacs/gmxpreprocess/gpp_nextnb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/grompp.cpp.o -c /<>/src/gromacs/gmxpreprocess/grompp.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/h_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/h_db.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hackblock.cpp.o -c /<>/src/gromacs/gmxpreprocess/hackblock.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/hizzie.cpp.o -c /<>/src/gromacs/gmxpreprocess/hizzie.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/insert-molecules.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/keyvaluetreemdpwriter.cpp.o -c /<>/src/gromacs/gmxpreprocess/keyvaluetreemdpwriter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/nm2type.cpp.o -c /<>/src/gromacs/gmxpreprocess/nm2type.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2gmx.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp /<>/src/gromacs/gmxpreprocess/grompp.cpp: In function ‘int gmx_grompp(int, char**)’: /<>/src/gromacs/gmxpreprocess/grompp.cpp:1628:26: warning: ‘ To ensure good equipartitio...’ directive writing 62 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s To ensure good equipartitioning, we suggest to switch to the %s cutoff-scheme, since that allows for better control over the Verlet buffer size and thus over the energy drift.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/grompp.cpp:52: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 175 or more bytes (assuming 4270) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/grompp.cpp:1619:26: warning: ‘ To ensure good equipartitio...’ directive writing 160 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s To ensure good equipartitioning, you need to either not use constraints on all bonds (but, if possible, only on bonds involving hydrogens) or use integrator = %s or decrease one or more tolerances: verlet-buffer-tolerance <= %g, LINCS iterations >= %d, LINCS order >= %d or SHAKE tolerance <= %g", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/grompp.cpp:1619:26: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/grompp.cpp:52: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 296 or more bytes (assuming 4407) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pdb2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/pdb2top.cpp /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp: In function ‘int gmx_pdb2gmx(int, char**)’: /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:2214:35: warning: ‘_pr.itp’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(posre_fn, "%s_pr.itp", buf_fn); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:2308:25: warning: ‘.itp’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(buf_fn, "%s%c%s.itp", ffdir, DIR_SEPARATOR, watermodel); ^~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/pdb2gmx.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 6 or more bytes (assuming 4101) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/pgutil.cpp.o -c /<>/src/gromacs/gmxpreprocess/pgutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/read-conformation.cpp.o -c /<>/src/gromacs/gmxpreprocess/read-conformation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/readir.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readpull.cpp.o -c /<>/src/gromacs/gmxpreprocess/readpull.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/readrot.cpp.o -c /<>/src/gromacs/gmxpreprocess/readrot.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/resall.cpp.o -c /<>/src/gromacs/gmxpreprocess/resall.cpp /<>/src/gromacs/gmxpreprocess/readpull.cpp: In function ‘char** read_pullparams(int*, t_inpfile**, pull_params_t*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/readpull.cpp:365:27: warning: ‘ should contain ’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(wbuf, "%s should contain %d pull group indices with geometry %s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readpull.cpp:44: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 52 or more bytes (assuming 4147) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp: In function ‘void set_reference_positions(t_rot*, real (*)[3], real (*)[3], const char*, gmx_bool, warninp_t)’: /<>/src/gromacs/gmxpreprocess/readrot.cpp:269:26: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size between 0 and 4095 [-Wformat-overflow=] sprintf(reffile, "%s.%d.%s", base, g, extension); ^~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:269:26: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readrot.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 4 and 8203 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:232:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4050 [-Wformat-overflow=] sprintf(warn_buf, "%s Box size in reference file %s differs from actual box size!", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/readrot.cpp:292:45: check_box_unchanged(f_box, box, reffile, wi); ~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/readrot.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 77 and 4172 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/solvate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/specbond.cpp.o -c /<>/src/gromacs/gmxpreprocess/specbond.cpp /<>/src/gromacs/gmxpreprocess/specbond.cpp: In function ‘int mk_specbonds(t_atoms*, real (*)[3], gmx_bool, t_ssbond**, gmx_bool)’: /<>/src/gromacs/gmxpreprocess/specbond.cpp:303:34: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:303:34: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/gmxpreprocess/gpp_atomtype.h:41, from /<>/src/gromacs/gmxpreprocess/pdb2top.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:314:34: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=] sprintf(buf, "%s%d", *pdba->atomname[sgp[i]], sgp[i]+1); ^~~~~~ /<>/src/gromacs/gmxpreprocess/specbond.cpp:314:34: note: directive argument in the range [-2147483647, 2147483647] In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/gmxpreprocess/gpp_atomtype.h:41, from /<>/src/gromacs/gmxpreprocess/pdb2top.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.h:41, from /<>/src/gromacs/gmxpreprocess/specbond.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 12) into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/ter_db.cpp.o -c /<>/src/gromacs/gmxpreprocess/ter_db.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/tomorse.cpp.o -c /<>/src/gromacs/gmxpreprocess/tomorse.cpp /<>/src/gromacs/gmxpreprocess/solvate.cpp: In function ‘void update_top(t_atoms*, int, real (*)[3], int, t_filenm*, gmx_atomprop_t)’: /<>/src/gromacs/gmxpreprocess/solvate.cpp:805:34: warning: ‘ in water ’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s in water\n", buf2); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/oenv.h:40, from /<>/src/gromacs/commandline/pargs.h:48, from /<>/src/gromacs/gmxpreprocess/solvate.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topdirs.cpp.o -c /<>/src/gromacs/gmxpreprocess/topdirs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topio.cpp.o -c /<>/src/gromacs/gmxpreprocess/topio.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toppush.cpp.o -c /<>/src/gromacs/gmxpreprocess/toppush.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_at(t_symtab*, gpp_atomtype_t, t_bond_atomtype, char*, int, t_nbparam***, t_nbparam***, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:492:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4074 [-Wformat-overflow=] sprintf(errbuf, "Invalid particle type %s", ptype); ^~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:530:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] sprintf(errbuf, "Adding atomtype %s failed", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 24 and 4119 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:517:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4076 [-Wformat-overflow=] sprintf(errbuf, "Overriding atomtype %s", type); ^~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:522:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] sprintf(errbuf, "Replacing atomtype %s failed", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 27 and 4122 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/topshake.cpp.o -c /<>/src/gromacs/gmxpreprocess/topshake.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_gb_params(gpp_atomtype_t, char*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1096:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4065 [-Wformat-overflow=] sprintf(errbuf, "Too few gb parameters for type %s\n", atypename); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 33 and 4128 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/toputil.cpp.o -c /<>/src/gromacs/gmxpreprocess/toputil.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_atom(t_symtab*, t_block*, t_atoms*, gpp_atomtype_t, char*, int*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1416:37: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4087 [-Wformat-overflow=] sprintf(errbuf, "Atomtype %s not found", ctypeB); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1288:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4072 [-Wformat-overflow=] sprintf(errbuf, "Invalid residue number '%s' for atom %d", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1444:39: type, ctype, ptype, resnumberic, ~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 37 and 4142 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:1389:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4087 [-Wformat-overflow=] sprintf(errbuf, "Atomtype %s not found", ctype); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_molt(t_symtab*, int*, t_molinfo**, char*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:1468:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4083 [-Wformat-overflow=] sprintf(errbuf, "moleculetype %s is redefined", type); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 27 and 4122 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/vsite_parm.cpp.o -c /<>/src/gromacs/gmxpreprocess/vsite_parm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/x2top.cpp.o -c /<>/src/gromacs/gmxpreprocess/x2top.cpp /<>/src/gromacs/gmxpreprocess/toppush.cpp: In function ‘void push_mol(int, t_molinfo*, char*, int*, int*, warninp_t)’: /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4078 [-Wformat-overflow=] sprintf(errbuf, "For moleculetype '%s' in [ system ] %d case insensitive matches, but %d case sensitive matches were found. Check the case of the characters in the moleculetypes.", type, nrci, nrcs); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: note: directive argument in the range [2, 2147483647] /<>/src/gromacs/gmxpreprocess/toppush.cpp:2428:29: note: directive argument in the range [0, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 158 and 4271 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/gmxpreprocess/toppush.cpp:2438:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4075 [-Wformat-overflow=] sprintf(errbuf, "No such moleculetype %s", type); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /<>/src/gromacs/fileio/warninp.h:40, from /<>/src/gromacs/gmxpreprocess/toppush.h:41, from /<>/src/gromacs/gmxpreprocess/toppush.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 22 and 4117 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxpreprocess/xlate.cpp.o -c /<>/src/gromacs/gmxpreprocess/xlate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/autocorr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/crosscorr.cpp.o -c /<>/src/gromacs/correlationfunctions/crosscorr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/expfit.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/gmx_lmcurve.cpp.o -c /<>/src/gromacs/correlationfunctions/gmx_lmcurve.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/integrate.cpp.o -c /<>/src/gromacs/correlationfunctions/integrate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/manyautocorrelation.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/correlationfunctions/polynomials.cpp.o -c /<>/src/gromacs/correlationfunctions/polynomials.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/statistics/statistics.cpp.o -c /<>/src/gromacs/statistics/statistics.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/abstractdata.cpp.o -c /<>/src/gromacs/analysisdata/abstractdata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/analysisdata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/arraydata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataframe.cpp.o -c /<>/src/gromacs/analysisdata/dataframe.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodule.cpp.o -c /<>/src/gromacs/analysisdata/datamodule.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datamodulemanager.cpp.o -c /<>/src/gromacs/analysisdata/datamodulemanager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/dataproxy.cpp.o -c /<>/src/gromacs/analysisdata/dataproxy.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/datastorage.cpp.o -c /<>/src/gromacs/analysisdata/datastorage.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/average.cpp.o -c /<>/src/gromacs/analysisdata/modules/average.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/displacement.cpp.o -c /<>/src/gromacs/analysisdata/modules/displacement.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/analysisdata/modules/frameaverager.cpp.o -c /<>/src/gromacs/analysisdata/modules/frameaverager.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/evaluate.cpp.o -c /<>/src/gromacs/selection/evaluate.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/indexutil.cpp.o -c /<>/src/gromacs/selection/indexutil.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/mempool.cpp.o -c /<>/src/gromacs/selection/mempool.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/nbsearch.cpp.o -c /<>/src/gromacs/selection/nbsearch.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/params.cpp.o -c /<>/src/gromacs/selection/params.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parser.cpp.o -c /<>/src/gromacs/selection/parser.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/parsetree.cpp.o 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/position.cpp.o -c /<>/src/gromacs/selection/position.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -Wno-unused-parameter -Wno-unused-function -o CMakeFiles/libgromacs.dir/selection/scanner.cpp.o -c /<>/src/gromacs/selection/scanner.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoption.cpp.o -c /<>/src/gromacs/selection/selectionoption.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/selectionoptionbehavior.cpp.o 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_position.cpp.o -c /<>/src/gromacs/selection/sm_position.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/selection/sm_same.cpp.o -c 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/angle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/modules/pairdist.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/trajectoryanalysis/modules/rdf.cpp.o -c 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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/<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops 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-DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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/<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/cpuinfo.cpp.o -c /<>/src/gromacs/hardware/cpuinfo.cpp cd 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/hardware/printhardware.cpp.o -c /<>/src/gromacs/hardware/printhardware.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/options/treesupport.cpp.o -c /<>/src/gromacs/options/treesupport.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/decidegpuusage.cpp.o -c 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-fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/reportgpuusage.cpp.o -c /<>/src/gromacs/taskassignment/reportgpuusage.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/resourcedivision.cpp.o -c /<>/src/gromacs/taskassignment/resourcedivision.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/taskassignment/taskassignment.cpp.o -c /<>/src/gromacs/taskassignment/taskassignment.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 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-I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/errhandler.c.o -c /<>/src/external/thread_mpi/src/errhandler.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_malloc.c.o -c /<>/src/external/thread_mpi/src/tmpi_malloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/atomic.c.o -c /<>/src/external/thread_mpi/src/atomic.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/lock.c.o -c /<>/src/external/thread_mpi/src/lock.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/pthreads.c.o -c /<>/src/external/thread_mpi/src/pthreads.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS 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-isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/barrier.c.o -c /<>/src/external/thread_mpi/src/barrier.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/p2p_send_recv.c.o -c /<>/src/external/thread_mpi/src/p2p_send_recv.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/bcast.c.o -c /<>/src/external/thread_mpi/src/bcast.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security 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-I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/profile.c.o -c /<>/src/external/thread_mpi/src/profile.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/comm.c.o -c /<>/src/external/thread_mpi/src/comm.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce.c.o -c /<>/src/external/thread_mpi/src/reduce.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/event.c.o -c /<>/src/external/thread_mpi/src/event.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/reduce_fast.c.o -c /<>/src/external/thread_mpi/src/reduce_fast.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/gather.c.o -c /<>/src/external/thread_mpi/src/gather.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scatter.c.o -c /<>/src/external/thread_mpi/src/scatter.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/group.c.o -c /<>/src/external/thread_mpi/src/group.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/tmpi_init.c.o -c /<>/src/external/thread_mpi/src/tmpi_init.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/topology.c.o -c /<>/src/external/thread_mpi/src/topology.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/list.c.o -c /<>/src/external/thread_mpi/src/list.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/type.c.o -c /<>/src/external/thread_mpi/src/type.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/scan.c.o -c /<>/src/external/thread_mpi/src/scan.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/numa_malloc.c.o -c /<>/src/external/thread_mpi/src/numa_malloc.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/thread_mpi/src/once.c.o -c /<>/src/external/thread_mpi/src/once.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/__/external/lmfit/lmmin.cpp.o -c /<>/src/external/lmfit/lmmin.cpp cd /<>/build/basic-dp/src/gromacs && /usr/bin/cc -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -Dlibgromacs_EXPORTS -I/<>/build/basic-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/basic-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fPIC -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion-gen.c.o -c /<>/build/basic-dp/src/gromacs/utility/baseversion-gen.c cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_link_script CMakeFiles/libgromacs.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -shared -Wl,-soname,libgromacs_d.so.3 -o ../../lib/libgromacs_d.so.3.3.0 @CMakeFiles/libgromacs.dir/objects1.rsp /usr/lib/aarch64-linux-gnu/libhwloc.so -ldl -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so -lpthread -fopenmp -lm /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lm cd /<>/build/basic-dp/src/gromacs && /usr/bin/cmake -E cmake_symlink_library ../../lib/libgromacs_d.so.3.3.0 ../../lib/libgromacs_d.so.3 ../../lib/libgromacs_d.so make[3]: Leaving directory '/<>/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic-dp /<>/build/basic-dp/share/template /<>/build/basic-dp/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= Scanning dependencies of target gmx make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/gmx.cpp.o -c /<>/src/programs/gmx.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/gmx.dir/legacymodules.cpp.o -c /<>/src/programs/legacymodules.cpp Scanning dependencies of target template make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/share/template && /usr/bin/c++ -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/template.dir/template.cpp.o -c /<>/share/template/template.cpp cd /<>/build/basic-dp/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmx.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmx.dir/gmx.cpp.o CMakeFiles/gmx.dir/legacymodules.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o CMakeFiles/view_objlib.dir/view/3dview.cpp.o CMakeFiles/view_objlib.dir/view/buttons.cpp.o CMakeFiles/view_objlib.dir/view/dialogs.cpp.o CMakeFiles/view_objlib.dir/view/fgrid.cpp.o CMakeFiles/view_objlib.dir/view/filter.cpp.o CMakeFiles/view_objlib.dir/view/logo.cpp.o CMakeFiles/view_objlib.dir/view/manager.cpp.o CMakeFiles/view_objlib.dir/view/molps.cpp.o CMakeFiles/view_objlib.dir/view/nleg.cpp.o CMakeFiles/view_objlib.dir/view/nmol.cpp.o CMakeFiles/view_objlib.dir/view/popup.cpp.o CMakeFiles/view_objlib.dir/view/pulldown.cpp.o CMakeFiles/view_objlib.dir/view/view.cpp.o CMakeFiles/view_objlib.dir/view/x11.cpp.o CMakeFiles/view_objlib.dir/view/xdlg.cpp.o CMakeFiles/view_objlib.dir/view/xdlghi.cpp.o CMakeFiles/view_objlib.dir/view/xdlgitem.cpp.o CMakeFiles/view_objlib.dir/view/xmb.cpp.o CMakeFiles/view_objlib.dir/view/xutil.cpp.o -o ../../bin/gmx_d ../../lib/libgromacs_d.so.3.3.0 -fopenmp /usr/lib/aarch64-linux-gnu/libX11.so -lm make[3]: Leaving directory '/<>/build/basic-dp' [100%] Built target gmx cd /<>/build/basic-dp/share/template && /usr/bin/cmake -E cmake_link_script CMakeFiles/template.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/template.dir/template.cpp.o -o ../../bin/template ../../lib/libgromacs_d.so.3.3.0 -fopenmp -lm make[3]: Leaving directory '/<>/build/basic-dp' [100%] Built target template make[2]: Leaving directory '/<>/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 0 make[1]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -j4 -C build/basic tests make[1]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 96 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/<>/build/basic' make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/basic /<>/build/basic/src/external/gmock-1.7.0 /<>/build/basic/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/basic' make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic' make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build Scanning dependencies of target gmock make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic' make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build [ 1%] Built target tng_io_obj /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' [ 1%] Built target mdrun_test_objlib cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic /<>/build/basic/src/gromacs/onlinehelp/tests /<>/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 1%] Built target mdrun_objlib /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic /<>/build/basic/src/gromacs/analysisdata/tests /<>/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /<>/src/gromacs/analysisdata/tests/datatest.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /<>/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Leaving directory '/<>/build/basic' [ 1%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic' [ 1%] Built target mdrunutility-test-shared cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target libgromacs make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target analysisdata-test-shared cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/basic/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/basic' [ 78%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/basic /<>/build/basic/src/testutils /<>/build/basic/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/basic/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/basic/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/basic/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/basic' [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic /<>/build/basic/src/testutils/tests /<>/build/basic/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic /<>/build/basic/src/testutils/tests /<>/build/basic/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/basic /<>/build/basic/src/gromacs/mdlib/tests /<>/build/basic/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /<>/src/programs/mdrun/tests/multisim.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.3.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp make[4]: Leaving directory '/<>/build/basic' [ 80%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/basic /<>/build/basic/src/gromacs/applied-forces/tests /<>/build/basic/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<>/src/programs/mdrun/tests/multisimtest.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<>/src/programs/mdrun/tests/replicaexchange.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target applied-forces-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/basic /<>/build/basic/src/gromacs/listed-forces/tests /<>/build/basic/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<>/src/programs/mdrun/tests/domain_decomposition.cpp cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target listed-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/basic /<>/build/basic/src/gromacs/commandline/tests /<>/build/basic/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp make[4]: Leaving directory '/<>/build/basic' [ 81%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/basic /<>/build/basic/src/gromacs/ewald/tests /<>/build/basic/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/basic/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs.so.3.3.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 82%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/basic /<>/build/basic/src/gromacs/fft/tests /<>/build/basic/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 83%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/basic /<>/build/basic/src/gromacs/gpu_utils/tests /<>/build/basic/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/basic/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 84%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/basic /<>/build/basic/src/gromacs/hardware/tests /<>/build/basic/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 84%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/basic /<>/build/basic/src/gromacs/math/tests /<>/build/basic/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic /<>/build/basic/src/gromacs/mdrunutility/tests /<>/build/basic/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/basic/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 85%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic /<>/build/basic/src/gromacs/onlinehelp/tests /<>/build/basic/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/basic/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/basic /<>/build/basic/src/gromacs/options/tests /<>/build/basic/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 87%] Built target commandline-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/basic /<>/build/basic/src/gromacs/random/tests /<>/build/basic/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp make[4]: Leaving directory '/<>/build/basic' [ 87%] Built target ewald-test cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp make[4]: Leaving directory '/<>/build/basic' [ 88%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/basic /<>/build/basic/src/gromacs/tables/tests /<>/build/basic/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/basic/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 89%] Built target table-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/basic /<>/build/basic/src/gromacs/taskassignment/tests /<>/build/basic/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/basic/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target random-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/basic /<>/build/basic/src/gromacs/utility/tests /<>/build/basic/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target taskassignment-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/basic /<>/build/basic/src/gromacs/fileio/tests /<>/build/basic/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/basic/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 90%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/basic /<>/build/basic/src/gromacs/pulling/tests /<>/build/basic/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/basic/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target options-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/basic /<>/build/basic/src/gromacs/awh/tests /<>/build/basic/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/basic/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target pull-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/basic /<>/build/basic/src/gromacs/simd/tests /<>/build/basic/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /<>/build/basic/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target awh-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxana/tests /<>/build/basic /<>/build/basic/src/gromacs/gmxana/tests /<>/build/basic/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_traj.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_trjconv.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/basic/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 91%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxpreprocess/tests /<>/build/basic /<>/build/basic/src/gromacs/gmxpreprocess/tests /<>/build/basic/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/genconf.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/readir.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/solvate.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp [ 91%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/correlationfunctions/tests /<>/build/basic /<>/build/basic/src/gromacs/correlationfunctions/tests /<>/build/basic/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Scanning dependencies of target correlations-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/expfit.cpp cd /<>/build/basic/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic' [ 93%] Built target utility-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic /<>/build/basic/src/gromacs/analysisdata/tests /<>/build/basic/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/tests/analysisdata.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/tests/arraydata.cpp cd /<>/build/basic/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 94%] Built target correlations-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/selection/tests /<>/build/basic /<>/build/basic/src/gromacs/selection/tests /<>/build/basic/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Scanning dependencies of target selection-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<>/src/gromacs/selection/tests/indexutil.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<>/src/gromacs/analysisdata/tests/average.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<>/src/gromacs/selection/tests/nbsearch.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<>/src/gromacs/analysisdata/tests/histogram.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/tests/lifetime.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<>/src/gromacs/selection/tests/poscalc.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<>/src/gromacs/selection/tests/selectioncollection.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/basic/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 94%] Built target analysisdata-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/trajectoryanalysis/tests /<>/build/basic /<>/build/basic/src/gromacs/trajectoryanalysis/tests /<>/build/basic/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<>/src/gromacs/selection/tests/selectionoption.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<>/src/gromacs/selection/tests/toputils.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/angle.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /<>/build/basic/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp make[4]: Leaving directory '/<>/build/basic' [ 95%] Built target selection-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/energyanalysis/tests /<>/build/basic /<>/build/basic/src/gromacs/energyanalysis/tests /<>/build/basic/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target energyanalysis-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<>/src/gromacs/energyanalysis/tests/legacyenergy.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /<>/build/basic/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 96%] Built target simd-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/basic /<>/build/basic/src/gromacs/compat/tests /<>/build/basic/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/sasa.cpp cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/select.cpp cd /<>/build/basic/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic' [ 96%] Built target energyanalysis-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun-test make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /<>/build/basic/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [ 96%] Built target compat-test cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<>/src/programs/mdrun/tests/grompp.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<>/src/programs/mdrun/tests/initialconstraints.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<>/src/programs/mdrun/tests/rerun.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<>/src/programs/mdrun/tests/trajectory_writing.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<>/src/programs/mdrun/tests/trajectoryreader.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<>/src/programs/mdrun/tests/compressed_x_output.cpp cd /<>/build/basic/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<>/src/programs/mdrun/tests/swapcoords.cpp make[4]: Leaving directory '/<>/build/basic' [ 97%] Built target trajectoryanalysis-test cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<>/src/programs/mdrun/tests/interactiveMD.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<>/src/programs/mdrun/tests/termination.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<>/src/programs/mdrun/tests/pmetest.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic' [100%] Built target mdrun-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/basic /<>/build/basic /<>/build/basic/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/basic' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/basic' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/basic' [100%] Built target tests make[3]: Leaving directory '/<>/build/basic' /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 0 make[2]: Leaving directory '/<>/build/basic' make[1]: Leaving directory '/<>/build/basic' (cd build/basic; LD_LIBRARY_PATH=/<>/build/basic/lib ctest -V) UpdateCTestConfiguration from :/<>/build/basic/DartConfiguration.tcl Parse Config file:/<>/build/basic/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/basic/DartConfiguration.tcl Parse Config file:/<>/build/basic/DartConfiguration.tcl Test project /<>/build/basic Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/basic/bin/testutils-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) 1: [----------] 34 tests from ReferenceDataTest (14 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (23 ms total) 1: [ PASSED ] 59 tests. 1/33 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /<>/build/basic/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (1 ms) 2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.01 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/basic/bin/mdlib-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (2 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/basic/bin/applied-forces-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/basic/bin/listed-forces-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (1 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (1 ms total) 5: [ PASSED ] 15 tests. 5/33 Test #5: ListedForcesTest ................. Passed 0.01 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/basic/bin/commandline-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (2 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (5 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (13 ms total) 6: [ PASSED ] 57 tests. 6/33 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/basic/bin/ewald-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (48 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (106 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (30 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (26 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (29 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (77 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (382 ms total) 7: [ PASSED ] 257 tests. 7/33 Test #7: EwaldUnitTests ................... Passed 0.44 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/basic/bin/fft-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (7 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) 8: [----------] 2 tests from ManyFFTTest (18 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) 8: [----------] 1 test from FFTTest (4 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (3 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (7 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (25 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (50 ms total) 8: [ PASSED ] 14 tests. 8/33 Test #8: FFTUnitTests ..................... Passed 0.06 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/basic/bin/gpu_utils-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (4 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (2 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (2 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (8 ms total) 9: [ PASSED ] 30 tests. 9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.02 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/basic/bin/hardware-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (6 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (6 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (6 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (6 ms) 10: [----------] 4 tests from HardwareTopologyTest (26 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (26 ms total) 10: [ PASSED ] 4 tests. 10/33 Test #10: HardwareUnitTests ................ Passed 0.04 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/basic/bin/math-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (1 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (0 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (0 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (1 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 11: [----------] 21 tests from FunctionTest (4 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (4 ms total) 11: [ PASSED ] 31 tests. 11/33 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/basic/bin/mdrunutility-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) 12: [----------] 17 tests from ThreadAffinityTest (5 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (5 ms total) 12: [ PASSED ] 17 tests. 12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /<>/build/basic/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (5 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (3 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (7 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (18 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (4 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (7 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (2 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (20 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (39 ms total) 13: [ PASSED ] 13 tests. 13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/basic/bin/onlinehelp-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (1 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (0 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (1 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (1 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 14: [----------] 11 tests from HelpWriterContextTest (1 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (3 ms total) 14: [ PASSED ] 22 tests. 14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/basic/bin/options-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (0 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (1 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (1 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (1 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 15: [----------] 1 test from OptionsTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (0 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (1 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 15: [----------] 8 tests from TreeValueSupportTest (1 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (8 ms total) 15: [ PASSED ] 110 tests. 15/33 Test #15: OptionsUnitTests ................. Passed 0.02 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/basic/bin/random-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (0 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (1 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (1 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (0 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from NormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (0 ms) 16: [----------] 1 test from SeedTest (0 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (1 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (1 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (6 ms total) 16: [ PASSED ] 44 tests. 16/33 Test #16: RandomUnitTests .................. Passed 0.03 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/basic/bin/table-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 20 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (2 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (35 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (68 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (73 ms) 17: [ RUN ] SplineTableTest/0.Simd 17: [ OK ] SplineTableTest/0.Simd (16 ms) 17: [ RUN ] SplineTableTest/0.SimdTwoFunctions 17: [ OK ] SplineTableTest/0.SimdTwoFunctions (66 ms) 17: [----------] 10 tests from SplineTableTest/0 (269 ms total) 17: 17: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (3 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (1 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (6 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (11 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (12 ms) 17: [ RUN ] SplineTableTest/1.Simd 17: [ OK ] SplineTableTest/1.Simd (3 ms) 17: [ RUN ] SplineTableTest/1.SimdTwoFunctions 17: [ OK ] SplineTableTest/1.SimdTwoFunctions (11 ms) 17: [----------] 10 tests from SplineTableTest/1 (54 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 20 tests from 2 test cases ran. (323 ms total) 17: [ PASSED ] 20 tests. 17/33 Test #17: TableUnitTests ................... Passed 0.34 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/basic/bin/taskassignment-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (1 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (1 ms total) 18: [ PASSED ] 3 tests. 18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.01 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/basic/bin/utility-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (0 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (1 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (1 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 19: [----------] 6 tests from TreeValueTransformTest (1 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (0 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (0 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (0 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (1 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (2 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 19: [----------] 2 tests from PathTest (0 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 19: [----------] 7 tests from StringUtilityTest (0 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (0 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (0 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (1 ms) 19: [----------] 1 test from formatAndJoinTest (1 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (0 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (0 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (1 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (16 ms total) 19: [ PASSED ] 307 tests. 19/33 Test #19: UtilityUnitTests ................. Passed 0.04 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/basic/bin/fileio-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (1 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (1 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (0 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (0 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (7 ms total) 20: [ PASSED ] 15 tests. 20/33 Test #20: FileIOTests ...................... Passed 0.02 sec test 21 Start 21: PullTest 21: Test command: /<>/build/basic/bin/pull-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (1 ms total) 21: [ PASSED ] 5 tests. 21/33 Test #21: PullTest ......................... Passed 0.01 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/basic/bin/awh-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (0 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (1 ms) 22: [----------] 1 test from gridTest (1 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) 22: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (8 ms total) 22: [ PASSED ] 12 tests. 22/33 Test #22: AwhTest .......................... Passed 0.02 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/basic/bin/simd-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 277 tests from 22 test cases. 23: [----------] Global test environment set-up. 23: [----------] 9 tests from SimdBootstrapTest 23: [ RUN ] SimdBootstrapTest.loadStore 23: [ OK ] SimdBootstrapTest.loadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.loadU 23: [ OK ] SimdBootstrapTest.loadU (0 ms) 23: [ RUN ] SimdBootstrapTest.storeU 23: [ OK ] SimdBootstrapTest.storeU (0 ms) 23: [ RUN ] SimdBootstrapTest.loadStoreI 23: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 23: [ RUN ] SimdBootstrapTest.loadUI 23: [ OK ] SimdBootstrapTest.loadUI (0 ms) 23: [ RUN ] SimdBootstrapTest.storeUI 23: [ OK ] SimdBootstrapTest.storeUI (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4LoadStore 23: [ OK ] SimdBootstrapTest.simd4LoadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4LoadU 23: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4StoreU 23: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) 23: [----------] 9 tests from SimdBootstrapTest (0 ms total) 23: 23: [----------] 1 test from SimdTest 23: [ RUN ] SimdTest.GmxAligned 23: [ OK ] SimdTest.GmxAligned (0 ms) 23: [----------] 1 test from SimdTest (0 ms total) 23: 23: [----------] 42 tests from SimdFloatingpointTest 23: [ RUN ] SimdFloatingpointTest.setZero 23: [ OK ] SimdFloatingpointTest.setZero (0 ms) 23: [ RUN ] SimdFloatingpointTest.set 23: [ OK ] SimdFloatingpointTest.set (0 ms) 23: [ RUN ] SimdFloatingpointTest.add 23: [ OK ] SimdFloatingpointTest.add (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskAdd 23: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 23: [ RUN ] SimdFloatingpointTest.sub 23: [ OK ] SimdFloatingpointTest.sub (0 ms) 23: [ RUN ] SimdFloatingpointTest.mul 23: [ OK ] SimdFloatingpointTest.mul (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzMul 23: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 23: [ RUN ] SimdFloatingpointTest.fma 23: [ OK ] SimdFloatingpointTest.fma (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzFma 23: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fms 23: [ OK ] SimdFloatingpointTest.fms (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnma 23: [ OK ] SimdFloatingpointTest.fnma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnms 23: [ OK ] SimdFloatingpointTest.fnms (0 ms) 23: [ RUN ] SimdFloatingpointTest.abs 23: [ OK ] SimdFloatingpointTest.abs (0 ms) 23: [ RUN ] SimdFloatingpointTest.neg 23: [ OK ] SimdFloatingpointTest.neg (0 ms) 23: [ RUN ] SimdFloatingpointTest.and 23: [ OK ] SimdFloatingpointTest.and (0 ms) 23: [ RUN ] SimdFloatingpointTest.or 23: [ OK ] SimdFloatingpointTest.or (0 ms) 23: [ RUN ] SimdFloatingpointTest.xor 23: [ OK ] SimdFloatingpointTest.xor (0 ms) 23: [ RUN ] SimdFloatingpointTest.andNot 23: [ OK ] SimdFloatingpointTest.andNot (0 ms) 23: [ RUN ] SimdFloatingpointTest.max 23: [ OK ] SimdFloatingpointTest.max (0 ms) 23: [ RUN ] SimdFloatingpointTest.min 23: [ OK ] SimdFloatingpointTest.min (0 ms) 23: [ RUN ] SimdFloatingpointTest.round 23: [ OK ] SimdFloatingpointTest.round (0 ms) 23: [ RUN ] SimdFloatingpointTest.roundMode 23: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 23: [ RUN ] SimdFloatingpointTest.trunc 23: [ OK ] SimdFloatingpointTest.trunc (0 ms) 23: [ RUN ] SimdFloatingpointTest.frexp 23: [ OK ] SimdFloatingpointTest.frexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.ldexp 23: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.rsqrt 23: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRsqrt 23: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.rcp 23: [ OK ] SimdFloatingpointTest.rcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRcp 23: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.selectByNotMask 23: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpNe 23: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLe 23: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLt 23: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 23: [ RUN ] SimdFloatingpointTest.testBits 23: [ OK ] SimdFloatingpointTest.testBits (0 ms) 23: [ RUN ] SimdFloatingpointTest.andB 23: [ OK ] SimdFloatingpointTest.andB (0 ms) 23: [ RUN ] SimdFloatingpointTest.orB 23: [ OK ] SimdFloatingpointTest.orB (0 ms) 23: [ RUN ] SimdFloatingpointTest.anyTrueB 23: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 23: [ RUN ] SimdFloatingpointTest.blend 23: [ OK ] SimdFloatingpointTest.blend (0 ms) 23: [ RUN ] SimdFloatingpointTest.reduce 23: [ OK ] SimdFloatingpointTest.reduce (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 23: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 23: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 23: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 23: 23: [----------] 16 tests from SimdFloatingpointUtilTest 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 23: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 23: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.loadUNDuplicate4 23: [ OK ] SimdFloatingpointUtilTest.loadUNDuplicate4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.load4DuplicateN 23: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 23: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) 23: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) 23: 23: [----------] 3 tests from SimdVectorOperationsTest 23: [ RUN ] SimdVectorOperationsTest.iprod 23: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 23: [ RUN ] SimdVectorOperationsTest.norm2 23: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 23: [ RUN ] SimdVectorOperationsTest.cprod 23: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 23: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 23: 23: [----------] 45 tests from SimdMathTest 23: [ RUN ] SimdMathTest.copysign 23: [ OK ] SimdMathTest.copysign (0 ms) 23: [ RUN ] SimdMathTest.invsqrt 23: [ OK ] SimdMathTest.invsqrt (1 ms) 23: [ RUN ] SimdMathTest.maskzInvsqrt 23: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdMathTest.invsqrtPair 23: [ OK ] SimdMathTest.invsqrtPair (1 ms) 23: [ RUN ] SimdMathTest.sqrt 23: [ OK ] SimdMathTest.sqrt (0 ms) 23: [ RUN ] SimdMathTest.sqrtUnsafe 23: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 23: [ RUN ] SimdMathTest.inv 23: [ OK ] SimdMathTest.inv (1 ms) 23: [ RUN ] SimdMathTest.maskzInv 23: [ OK ] SimdMathTest.maskzInv (0 ms) 23: [ RUN ] SimdMathTest.log 23: [ OK ] SimdMathTest.log (1 ms) 23: [ RUN ] SimdMathTest.exp2 23: [ OK ] SimdMathTest.exp2 (1 ms) 23: [ RUN ] SimdMathTest.exp2Unsafe 23: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 23: [ RUN ] SimdMathTest.exp 23: [ OK ] SimdMathTest.exp (2 ms) 23: [ RUN ] SimdMathTest.expUnsafe 23: [ OK ] SimdMathTest.expUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erf 23: [ OK ] SimdMathTest.erf (1 ms) 23: [ RUN ] SimdMathTest.erfc 23: [ OK ] SimdMathTest.erfc (2 ms) 23: [ RUN ] SimdMathTest.sin 23: [ OK ] SimdMathTest.sin (2 ms) 23: [ RUN ] SimdMathTest.cos 23: [ OK ] SimdMathTest.cos (1 ms) 23: [ RUN ] SimdMathTest.tan 23: [ OK ] SimdMathTest.tan (9 ms) 23: [ RUN ] SimdMathTest.asin 23: [ OK ] SimdMathTest.asin (1 ms) 23: [ RUN ] SimdMathTest.acos 23: [ OK ] SimdMathTest.acos (1 ms) 23: [ RUN ] SimdMathTest.atan 23: [ OK ] SimdMathTest.atan (0 ms) 23: [ RUN ] SimdMathTest.atan2 23: [ OK ] SimdMathTest.atan2 (1 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrection 23: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrection 23: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 23: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracy 23: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.invSingleAccuracy 23: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.logSingleAccuracy 23: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracy 23: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 23: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracy 23: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erfSingleAccuracy 23: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.erfcSingleAccuracy 23: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.sinSingleAccuracy 23: [ OK ] SimdMathTest.sinSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.cosSingleAccuracy 23: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.tanSingleAccuracy 23: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 23: [ RUN ] SimdMathTest.asinSingleAccuracy 23: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.acosSingleAccuracy 23: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atanSingleAccuracy 23: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atan2SingleAccuracy 23: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 23: [----------] 45 tests from SimdMathTest (63 ms total) 23: 23: [----------] 1 test from EmptyArrayRefTest 23: [ RUN ] EmptyArrayRefTest.IsEmpty 23: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 23: [----------] 1 test from EmptyArrayRefTest (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/0.Assignment 23: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/1.Assignment 23: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/0.Basic 23: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/1.Basic 23: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 23: 23: [----------] 23 tests from SimdIntegerTest 23: [ RUN ] SimdIntegerTest.setZero 23: [ OK ] SimdIntegerTest.setZero (0 ms) 23: [ RUN ] SimdIntegerTest.set 23: [ OK ] SimdIntegerTest.set (0 ms) 23: [ RUN ] SimdIntegerTest.add 23: [ OK ] SimdIntegerTest.add (0 ms) 23: [ RUN ] SimdIntegerTest.sub 23: [ OK ] SimdIntegerTest.sub (0 ms) 23: [ RUN ] SimdIntegerTest.mul 23: [ OK ] SimdIntegerTest.mul (0 ms) 23: [ RUN ] SimdIntegerTest.and 23: [ OK ] SimdIntegerTest.and (0 ms) 23: [ RUN ] SimdIntegerTest.andNot 23: [ OK ] SimdIntegerTest.andNot (0 ms) 23: [ RUN ] SimdIntegerTest.or 23: [ OK ] SimdIntegerTest.or (0 ms) 23: [ RUN ] SimdIntegerTest.xor 23: [ OK ] SimdIntegerTest.xor (0 ms) 23: [ RUN ] SimdIntegerTest.extract 23: [ OK ] SimdIntegerTest.extract (0 ms) 23: [ RUN ] SimdIntegerTest.cvtR2I 23: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvttR2I 23: [ OK ] SimdIntegerTest.cvttR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvtI2R 23: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpLt 23: [ OK ] SimdIntegerTest.cmpLt (0 ms) 23: [ RUN ] SimdIntegerTest.testBits 23: [ OK ] SimdIntegerTest.testBits (0 ms) 23: [ RUN ] SimdIntegerTest.andB 23: [ OK ] SimdIntegerTest.andB (0 ms) 23: [ RUN ] SimdIntegerTest.orB 23: [ OK ] SimdIntegerTest.orB (0 ms) 23: [ RUN ] SimdIntegerTest.anyTrue 23: [ OK ] SimdIntegerTest.anyTrue (0 ms) 23: [ RUN ] SimdIntegerTest.blend 23: [ OK ] SimdIntegerTest.blend (0 ms) 23: [ RUN ] SimdIntegerTest.cvtB2IB 23: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 23: [ RUN ] SimdIntegerTest.cvtIB2B 23: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 23: [----------] 23 tests from SimdIntegerTest (1 ms total) 23: 23: [----------] 32 tests from Simd4FloatingpointTest 23: [ RUN ] Simd4FloatingpointTest.setZero 23: [ OK ] Simd4FloatingpointTest.setZero (0 ms) 23: [ RUN ] Simd4FloatingpointTest.set 23: [ OK ] Simd4FloatingpointTest.set (0 ms) 23: [ RUN ] Simd4FloatingpointTest.add 23: [ OK ] Simd4FloatingpointTest.add (0 ms) 23: [ RUN ] Simd4FloatingpointTest.sub 23: [ OK ] Simd4FloatingpointTest.sub (0 ms) 23: [ RUN ] Simd4FloatingpointTest.mul 23: [ OK ] Simd4FloatingpointTest.mul (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fma 23: [ OK ] Simd4FloatingpointTest.fma (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fms 23: [ OK ] Simd4FloatingpointTest.fms (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fnma 23: [ OK ] Simd4FloatingpointTest.fnma (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fnms 23: [ OK ] Simd4FloatingpointTest.fnms (0 ms) 23: [ RUN ] Simd4FloatingpointTest.abs 23: [ OK ] Simd4FloatingpointTest.abs (0 ms) 23: [ RUN ] Simd4FloatingpointTest.neg 23: [ OK ] Simd4FloatingpointTest.neg (0 ms) 23: [ RUN ] Simd4FloatingpointTest.and 23: [ OK ] Simd4FloatingpointTest.and (0 ms) 23: [ RUN ] Simd4FloatingpointTest.or 23: [ OK ] Simd4FloatingpointTest.or (0 ms) 23: [ RUN ] Simd4FloatingpointTest.xor 23: [ OK ] Simd4FloatingpointTest.xor (0 ms) 23: [ RUN ] Simd4FloatingpointTest.andNot 23: [ OK ] Simd4FloatingpointTest.andNot (0 ms) 23: [ RUN ] Simd4FloatingpointTest.max 23: [ OK ] Simd4FloatingpointTest.max (0 ms) 23: [ RUN ] Simd4FloatingpointTest.min 23: [ OK ] Simd4FloatingpointTest.min (0 ms) 23: [ RUN ] Simd4FloatingpointTest.round 23: [ OK ] Simd4FloatingpointTest.round (0 ms) 23: [ RUN ] Simd4FloatingpointTest.trunc 23: [ OK ] Simd4FloatingpointTest.trunc (0 ms) 23: [ RUN ] Simd4FloatingpointTest.gmxSimd4RsqrtR 23: [ OK ] Simd4FloatingpointTest.gmxSimd4RsqrtR (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] Simd4FloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] Simd4FloatingpointTest.selectByNotMask 23: [ OK ] Simd4FloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpNe 23: [ OK ] Simd4FloatingpointTest.cmpNe (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpLe 23: [ OK ] Simd4FloatingpointTest.cmpLe (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpLt 23: [ OK ] Simd4FloatingpointTest.cmpLt (0 ms) 23: [ RUN ] Simd4FloatingpointTest.andB 23: [ OK ] Simd4FloatingpointTest.andB (0 ms) 23: [ RUN ] Simd4FloatingpointTest.orB 23: [ OK ] Simd4FloatingpointTest.orB (0 ms) 23: [ RUN ] Simd4FloatingpointTest.anyTrue 23: [ OK ] Simd4FloatingpointTest.anyTrue (0 ms) 23: [ RUN ] Simd4FloatingpointTest.blend 23: [ OK ] Simd4FloatingpointTest.blend (0 ms) 23: [ RUN ] Simd4FloatingpointTest.reduce 23: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 23: [ RUN ] Simd4FloatingpointTest.dotProduct 23: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 23: [ RUN ] Simd4FloatingpointTest.transpose 23: [ OK ] Simd4FloatingpointTest.transpose (0 ms) 23: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 23: 23: [----------] 1 test from Simd4VectorOperationsTest 23: [ RUN ] Simd4VectorOperationsTest.norm2 23: [ OK ] Simd4VectorOperationsTest.norm2 (0 ms) 23: [----------] 1 test from Simd4VectorOperationsTest (0 ms total) 23: 23: [----------] 2 tests from Simd4MathTest 23: [ RUN ] Simd4MathTest.invsqrt 23: [ OK ] Simd4MathTest.invsqrt (1 ms) 23: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy 23: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) 23: [----------] 2 tests from Simd4MathTest (1 ms total) 23: 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (0 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (1 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (0 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 277 tests from 22 test cases ran. (67 ms total) 23: [ PASSED ] 277 tests. 23/33 Test #23: SimdUnitTests .................... Passed 0.09 sec test 24 Start 24: GmxAnaTest 24: Test command: /<>/build/basic/bin/gmxana-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GmxAnaTest.xml" 24: Test timeout computed to be: 600 24: [==========] Running 18 tests from 3 test cases. 24: [----------] Global test environment set-up. 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: trr version: GMX_trn_file (single precision) 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (15 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (5 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (4 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (3 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (21 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (7 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 18 tests from 3 test cases ran. (43 ms total) 24: [ PASSED ] 18 tests. 24/33 Test #24: GmxAnaTest ....................... Passed 0.06 sec test 25 Start 25: GmxPreprocessTests 25: Test command: /<>/build/basic/bin/gmxpreprocess-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/GmxPreprocessTests.xml" 25: Test timeout computed to be: 30 25: [==========] Running 22 tests from 4 test cases. 25: [----------] Global test environment set-up. 25: [----------] 4 tests from GenconfTest 25: [ RUN ] GenconfTest.nbox_Works 25: [ OK ] GenconfTest.nbox_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_norenumber_Works 25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_dist_Works 25: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_rot_Works 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: [ OK ] GenconfTest.nbox_rot_Works (1 ms) 25: [----------] 4 tests from GenconfTest (4 ms total) 25: 25: [----------] 5 tests from InsertMoleculesTest 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: 25: Added 1 molecules (out of 1 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 25: 25: Output configuration contains 8 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 success (now 6 atoms)! 25: Try 4 success (now 8 atoms)! 25: Try 5 success (now 10 atoms)! 25: 25: Added 5 molecules (out of 5 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 25: 25: Output configuration contains 10 atoms in 10 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: Try 2 success (now 10 atoms)! 25: 25: Added 2 molecules (out of 2 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 25: 25: Output configuration contains 10 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 25: Reading solute configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 650 atoms)! 25: Try 2 success (now 652 atoms)! 25: Try 3 success (now 654 atoms)! 25: Try 4 success (now 656 atoms)! 25: 25: Added 4 molecules (out of 4 requested) 25: Replaced 8 residues (24 atoms) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 25: 25: Output configuration contains 632 atoms in 212 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (11 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 25: Reading molecule configuration 25: test molecule for insertion at origin 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Read 4 positions from file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat 25: 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 Try 4 Try 5 Try 6 Try 7 Try 8 Try 9 Try 10 Try 11 Try 12 skipped position (0.990, 2.010, 3.000) 25: Try 13 success (now 6 atoms)! 25: 25: Added 3 molecules (out of 4 requested) 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 25: 25: Output configuration contains 6 atoms in 3 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (2 ms) 25: [----------] 5 tests from InsertMoleculesTest (23 ms total) 25: 25: [----------] 8 tests from GetIrTest 25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: Ignoring obsolete mdp entry 'title' 25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' 25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (4 ms) 25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme 25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (4 ms) 25: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (4 ms) 25: [ RUN ] GetIrTest.EmptyInputWorks 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.EmptyInputWorks (4 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricField 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricField (4 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (4 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 25: 25: NOTE 1 [file /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: 25: /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (4 ms) 25: [----------] 8 tests from GetIrTest (34 ms total) 25: 25: [----------] 5 tests from SolvateTest 25: [ RUN ] SolvateTest.cs_box_Works 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 1x1x1 boxes 25: Solvent box contains 270 atoms in 90 residues 25: Removed 129 solvent atoms due to solvent-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 47 residues 25: Generated solvent containing 141 atoms in 47 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro 25: 25: Output configuration contains 141 atoms in 47 residues 25: Volume : 1.331 (nm^3) 25: Density : 1056.36 (g/l) 25: Number of solvent molecules: 47 25: 25: [ OK ] SolvateTest.cs_box_Works (12 ms) 25: [ RUN ] SolvateTest.cs_cp_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.777 (g/l) 25: Number of solvent molecules: 886 25: 25: [ OK ] SolvateTest.cs_cp_Works (52 ms) 25: [ RUN ] SolvateTest.cs_cp_p_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.777 (g/l) 25: Number of solvent molecules: 886 25: 25: Processing topology 25: Adding line for 886 solvent molecules with resname (SOL) to topology file (/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) 25: [ OK ] SolvateTest.cs_cp_p_Works (53 ms) 25: [ RUN ] SolvateTest.shell_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 1902 solvent atoms more than 1.000000 nm from solute. 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 252 residues 25: Generated solvent containing 756 atoms in 252 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro 25: 25: Output configuration contains 762 atoms in 254 residues 25: Volume : 27.2709 (nm^3) 25: Density : 279.3 (g/l) 25: Number of solvent molecules: 252 25: 25: [ OK ] SolvateTest.shell_Works (28 ms) 25: [ RUN ] SolvateTest.update_Topology_Works 25: Reading solute configuration 25: Test system for solvate 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 3x3x3 boxes 25: Solvent box contains 14952 atoms in 4984 residues 25: Removed 2787 solvent atoms due to solvent-solvent overlap 25: Removed 30 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 2 different molecule types: 25: HOH ( 3 atoms): 1876 residues 25: SOL ( 3 atoms): 2169 residues 25: Generated solvent containing 12135 atoms in 4045 residues 25: Writing generated configuration to /<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_out.gro 25: 25: Output configuration contains 12141 atoms in 4047 residues 25: Volume : 125 (nm^3) 25: Density : 968.963 (g/l) 25: Number of solvent molecules: 4045 25: 25: Processing topology 25: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 25: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/<>/build/basic/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 25: [ OK ] SolvateTest.update_Topology_Works (207 ms) 25: [----------] 5 tests from SolvateTest (353 ms total) 25: 25: [----------] Global test environment tear-down 25: [==========] 22 tests from 4 test cases ran. (414 ms total) 25: [ PASSED ] 22 tests. 25/33 Test #25: GmxPreprocessTests ............... Passed 0.43 sec test 26 Start 26: CorrelationsTest 26: Test command: /<>/build/basic/bin/correlations-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CorrelationsTest.xml" 26: Test timeout computed to be: 30 26: [==========] Running 21 tests from 3 test cases. 26: [----------] Global test environment set-up. 26: [----------] 10 tests from AutocorrTest 26: [ RUN ] AutocorrTest.EacNormal 26: [ OK ] AutocorrTest.EacNormal (7 ms) 26: [ RUN ] AutocorrTest.EacNoNormalize 26: [ OK ] AutocorrTest.EacNoNormalize (4 ms) 26: [ RUN ] AutocorrTest.EacCos 26: [ OK ] AutocorrTest.EacCos (6 ms) 26: [ RUN ] AutocorrTest.EacVector 26: [ OK ] AutocorrTest.EacVector (9 ms) 26: [ RUN ] AutocorrTest.EacRcross 26: [ OK ] AutocorrTest.EacRcross (2 ms) 26: [ RUN ] AutocorrTest.EacP0 26: [ OK ] AutocorrTest.EacP0 (9 ms) 26: [ RUN ] AutocorrTest.EacP1 26: [ OK ] AutocorrTest.EacP1 (9 ms) 26: [ RUN ] AutocorrTest.EacP2 26: [ OK ] AutocorrTest.EacP2 (18 ms) 26: [ RUN ] AutocorrTest.EacP3 26: [ OK ] AutocorrTest.EacP3 (7 ms) 26: [ RUN ] AutocorrTest.EacP4 26: [ OK ] AutocorrTest.EacP4 (9 ms) 26: [----------] 10 tests from AutocorrTest (81 ms total) 26: 26: [----------] 1 test from ManyAutocorrelationTest 26: [ RUN ] ManyAutocorrelationTest.Empty 26: [ OK ] ManyAutocorrelationTest.Empty (0 ms) 26: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 26: 26: [----------] 10 tests from ExpfitTest 26: [ RUN ] ExpfitTest.EffnEXP1 26: [ OK ] ExpfitTest.EffnEXP1 (1 ms) 26: [ RUN ] ExpfitTest.EffnEXP2 26: [ OK ] ExpfitTest.EffnEXP2 (2 ms) 26: [ RUN ] ExpfitTest.EffnEXPEXP 26: [ OK ] ExpfitTest.EffnEXPEXP (4 ms) 26: [ RUN ] ExpfitTest.EffnEXP5 26: [ OK ] ExpfitTest.EffnEXP5 (12 ms) 26: [ RUN ] ExpfitTest.EffnEXP7 26: [ OK ] ExpfitTest.EffnEXP7 (11 ms) 26: [ RUN ] ExpfitTest.EffnEXP9 26: [ OK ] ExpfitTest.EffnEXP9 (136 ms) 26: [ RUN ] ExpfitTest.EffnERF 26: [ OK ] ExpfitTest.EffnERF (6 ms) 26: [ RUN ] ExpfitTest.EffnERREST 26: [ OK ] ExpfitTest.EffnERREST (2 ms) 26: [ RUN ] ExpfitTest.EffnVAC 26: [ OK ] ExpfitTest.EffnVAC (20 ms) 26: [ RUN ] ExpfitTest.EffnPRES 26: [ OK ] ExpfitTest.EffnPRES (40 ms) 26: [----------] 10 tests from ExpfitTest (237 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 21 tests from 3 test cases ran. (326 ms total) 26: [ PASSED ] 21 tests. 26/33 Test #26: CorrelationsTest ................. Passed 0.34 sec test 27 Start 27: AnalysisDataUnitTests 27: Test command: /<>/build/basic/bin/analysisdata-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/AnalysisDataUnitTests.xml" 27: Test timeout computed to be: 30 27: [==========] Running 69 tests from 14 test cases. 27: [----------] Global test environment set-up. 27: [----------] 3 tests from AnalysisDataInitializationTest 27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (1 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) 27: [----------] 3 tests from AnalysisDataInitializationTest (1 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/0 (6 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/1 (7 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (2 ms) 27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/2 (8 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/3 (8 ms total) 27: 27: [----------] 4 tests from AnalysisArrayDataTest 27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisArrayDataTest.StorageWorks 27: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) 27: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 27: 27: [----------] 6 tests from AverageModuleTest 27: [ RUN ] AverageModuleTest.BasicTest 27: [ OK ] AverageModuleTest.BasicTest (2 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipointData 27: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeXAxis 27: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) 27: [----------] 6 tests from AverageModuleTest (9 ms total) 27: 27: [----------] 2 tests from FrameAverageModuleTest 27: [ RUN ] FrameAverageModuleTest.BasicTest 27: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 2 tests from FrameAverageModuleTest (3 ms total) 27: 27: [----------] 7 tests from AnalysisHistogramSettingsTest 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms) 27: [----------] 7 tests from AnalysisHistogramSettingsTest (0 ms total) 27: 27: [----------] 2 tests from SimpleHistogramModuleTest 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [----------] 2 tests from SimpleHistogramModuleTest (3 ms total) 27: 27: [----------] 3 tests from WeightedHistogramModuleTest 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (2 ms) 27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from WeightedHistogramModuleTest (5 ms total) 27: 27: [----------] 3 tests from BinAverageModuleTest 27: [ RUN ] BinAverageModuleTest.ComputesCorrectly 27: [ OK ] BinAverageModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from BinAverageModuleTest (5 ms total) 27: 27: [----------] 4 tests from AbstractAverageHistogramTest 27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (2 ms) 27: [----------] 4 tests from AbstractAverageHistogramTest (8 ms total) 27: 27: [----------] 3 tests from LifetimeModuleTest 27: [ RUN ] LifetimeModuleTest.BasicTest 27: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 27: [ RUN ] LifetimeModuleTest.CumulativeTest 27: [ OK ] LifetimeModuleTest.CumulativeTest (1 ms) 27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from LifetimeModuleTest (4 ms total) 27: 27: [----------] Global test environment tear-down 27: [==========] 69 tests from 14 test cases ran. (70 ms total) 27: [ PASSED ] 69 tests. 27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.09 sec test 28 Start 28: SelectionUnitTests 28: Test command: /<>/build/basic/bin/selection-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/SelectionUnitTests.xml" 28: Test timeout computed to be: 30 28: [==========] Running 190 tests from 10 test cases. 28: [----------] Global test environment set-up. 28: [----------] 1 test from IndexGroupTest 28: [ RUN ] IndexGroupTest.RemovesDuplicates 28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms) 28: [----------] 1 test from IndexGroupTest (0 ms total) 28: 28: [----------] 15 tests from IndexBlockTest 28: [ RUN ] IndexBlockTest.CreatesUnknownBlock 28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesAtomBlock 28: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlock 28: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock 28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesSingleBlock 28: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (1 ms) 28: [----------] 15 tests from IndexBlockTest (2 ms total) 28: 28: [----------] 11 tests from IndexMapTest 28: [ RUN ] IndexMapTest.InitializesAtomBlock 28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (1 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 28: [ RUN ] IndexMapTest.InitializesMoleculeBlock 28: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsSingleBlock 28: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocks 28: [ OK ] IndexMapTest.MapsResidueBlocks (1 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 28: [ RUN ] IndexMapTest.HandlesMultipleRequests 28: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) 28: [----------] 11 tests from IndexMapTest (3 ms total) 28: 28: [----------] 15 tests from NeighborhoodSearchTest 28: [ RUN ] NeighborhoodSearchTest.SimpleSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSearch (21 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY 28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (22 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchBox 28: [ OK ] NeighborhoodSearchTest.GridSearchBox (4 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic 28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (12 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC 28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (7 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox 28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (60 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (5 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) 28: [----------] 15 tests from NeighborhoodSearchTest (140 ms total) 28: 28: [----------] 12 tests from PositionCalculationTest 28: [ RUN ] PositionCalculationTest.ComputesAtomPositions 28: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionMask 28: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (1 ms) 28: [----------] 12 tests from PositionCalculationTest (5 ms total) 28: 28: [----------] 30 tests from SelectionCollectionTest 28: [ RUN ] SelectionCollectionTest.HandlesNoSelections 28: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (1 ms) 28: [----------] 30 tests from SelectionCollectionTest (17 ms total) 28: 28: [----------] 14 tests from SelectionCollectionInteractiveTest 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (1 ms) 28: [----------] 14 tests from SelectionCollectionInteractiveTest (10 ms total) 28: 28: [----------] 66 tests from SelectionCollectionDataTest 28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResnr 28: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesChain 28: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMass 28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCharge 28: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBeta 28: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResname 28: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (6 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (0 ms) 28: [----------] 66 tests from SelectionCollectionDataTest (81 ms total) 28: 28: [----------] 17 tests from SelectionOptionTest 28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptySelections 28: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelections 28: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesAdjuster 28: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) 28: [----------] 17 tests from SelectionOptionTest (7 ms total) 28: 28: [----------] 9 tests from SelectionFileOptionTest 28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (0 ms) 28: [----------] 9 tests from SelectionFileOptionTest (3 ms total) 28: 28: [----------] Global test environment tear-down 28: [==========] 190 tests from 10 test cases ran. (268 ms total) 28: [ PASSED ] 190 tests. 28/33 Test #28: SelectionUnitTests ............... Passed 0.29 sec test 29 Start 29: TrajectoryAnalysisUnitTests 29: Test command: /<>/build/basic/bin/trajectoryanalysis-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/TrajectoryAnalysisUnitTests.xml" 29: Test timeout computed to be: 30 29: [==========] Running 68 tests from 13 test cases. 29: [----------] Global test environment set-up. 29: [----------] 5 tests from ClustsizeTest 29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 2, cmax: 4, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (3 ms) 29: [ RUN ] ClustsizeTest.NoMolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 1, cmax: 6, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms) 29: [ RUN ] ClustsizeTest.MolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 1, cmax: 6, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolCSize 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolCSize (4 ms) 29: [----------] 5 tests from ClustsizeTest (18 ms total) 29: 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (5 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (4 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (0 ms) 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (10 ms total) 29: 29: [----------] 11 tests from AngleModuleTest 29: [ RUN ] AngleModuleTest.ComputesSimpleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesSimpleAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesDihedrals 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesDihedrals (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 29: Reading frames from gro file 'Test system for different angles', 33 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesMultipleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesMultipleAngles (5 ms) 29: [ RUN ] AngleModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesDynamicSelections (5 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (4 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (5 ms) 29: [----------] 11 tests from AngleModuleTest (51 ms total) 29: 29: [----------] 3 tests from DistanceModuleTest 29: [ RUN ] DistanceModuleTest.ComputesDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: [ OK ] DistanceModuleTest.ComputesDistances (6 ms) 29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB: 29: Number of samples: 4 29: Average distance: 1.81066 nm 29: Standard deviation: 0.79289 nm 29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (6 ms) 29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2 and res_cog x < 2.8: 29: Number of samples: 3 29: Average distance: 1.72076 nm 29: Standard deviation: 1.24839 nm 29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (6 ms) 29: [----------] 3 tests from DistanceModuleTest (18 ms total) 29: 29: [----------] 2 tests from FreeVolumeModuleTest 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for 40 particles. These were set to zero. 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 13 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.02 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 29: Fractional free volume 0.194 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (156 ms) 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 17 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.48 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 29: Fractional free volume 0.200 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (155 ms) 29: [----------] 2 tests from FreeVolumeModuleTest (311 ms total) 29: 29: [----------] 7 tests from PairDistanceModuleTest 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) 29: [----------] 7 tests from PairDistanceModuleTest (30 ms total) 29: 29: [----------] 3 tests from RdfModuleTest 29: [ RUN ] RdfModuleTest.BasicTest 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.BasicTest (31 ms) 29: [ RUN ] RdfModuleTest.CalculatesSurf 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesSurf (17 ms) 29: [ RUN ] RdfModuleTest.CalculatesXY 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesXY (36 ms) 29: [----------] 3 tests from RdfModuleTest (84 ms total) 29: 29: [----------] 5 tests from SasaModuleTest 29: [ RUN ] SasaModuleTest.BasicTest 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.BasicTest (17 ms) 29: [ RUN ] SasaModuleTest.HandlesSelectedResidues 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesSelectedResidues (10 ms) 29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (10 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (12 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (12 ms) 29: [----------] 5 tests from SasaModuleTest (64 ms total) 29: 29: [----------] 8 tests from SelectModuleTest 29: [ RUN ] SelectModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.BasicTest (7 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (6 ms) 29: [ RUN ] SelectModuleTest.NormalizesSizes 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.NormalizesSizes (4 ms) 29: [ RUN ] SelectModuleTest.WritesResidueNumbers 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueNumbers (4 ms) 29: [ RUN ] SelectModuleTest.WritesResidueIndices 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) 29: [----------] 8 tests from SelectModuleTest (45 ms total) 29: 29: [----------] 10 tests from SurfaceAreaTest 29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints 29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (2 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints12 29: [ OK ] SurfaceAreaTest.SurfacePoints12 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints32 29: [ OK ] SurfaceAreaTest.SurfacePoints32 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints42 29: [ OK ] SurfaceAreaTest.SurfacePoints42 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints122 29: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100Points 29: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (3 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) 29: [----------] 10 tests from SurfaceAreaTest (16 ms total) 29: 29: [----------] 4 tests from TrajectoryModuleTest 29: [ RUN ] TrajectoryModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.BasicTest (4 ms) 29: [ RUN ] TrajectoryModuleTest.PlotsXOnly 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.PlotsXOnly (4 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (5 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoForces 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoForces (4 ms) 29: [----------] 4 tests from TrajectoryModuleTest (18 ms total) 29: 29: [----------] 5 tests from UnionFinderTest 29: [ RUN ] UnionFinderTest.WorksEmpty 29: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 29: [ RUN ] UnionFinderTest.BasicMerges 29: [ OK ] UnionFinderTest.BasicMerges (1 ms) 29: [ RUN ] UnionFinderTest.LargerMerges 29: [ OK ] UnionFinderTest.LargerMerges (0 ms) 29: [ RUN ] UnionFinderTest.LongRightMerge 29: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 29: [ RUN ] UnionFinderTest.LongLeftMerge 29: [ OK ] UnionFinderTest.LongLeftMerge (0 ms) 29: [----------] 5 tests from UnionFinderTest (1 ms total) 29: 29: [----------] 1 test from MappedUnionFinderTest 29: [ RUN ] MappedUnionFinderTest.BasicMerges 29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms) 29: [----------] 1 test from MappedUnionFinderTest (0 ms total) 29: 29: [----------] Global test environment tear-down 29: [==========] 68 tests from 13 test cases ran. (668 ms total) 29: [ PASSED ] 68 tests. 29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 0.68 sec test 30 Start 30: EnergyAnalysisUnitTests 30: Test command: /<>/build/basic/bin/energyanalysis-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/EnergyAnalysisUnitTests.xml" 30: Test timeout computed to be: 30 30: [==========] Running 7 tests from 4 test cases. 30: [----------] Global test environment set-up. 30: [----------] 1 test from DhdlTest 30: [ RUN ] DhdlTest.ExtractDhdl 30: Opened /<>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision) 30: Note: file tpx version 110, software tpx version 112 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.010 Reading energy frame 2 time 0.020 Reading energy frame 3 time 0.030 Reading energy frame 4 time 0.040 Reading energy frame 5 time 0.050 Reading energy frame 6 time 0.060 Reading energy frame 7 time 0.070 Reading energy frame 8 time 0.080 Reading energy frame 9 time 0.090 Reading energy frame 10 time 0.100 Reading energy frame 11 time 0.110 Reading energy frame 12 time 0.120 Reading energy frame 13 time 0.130 Reading energy frame 14 time 0.140 Reading energy frame 15 time 0.150 Reading energy frame 16 time 0.160 Reading energy frame 17 time 0.170 Reading energy frame 18 time 0.180 Reading energy frame 19 time 0.190 Reading energy frame 20 time 0.200 Reading energy frame 30 time 0.300 Reading energy frame 40 time 0.400 Reading energy frame 50 time 0.500 Reading energy frame 60 time 0.600 Reading energy frame 70 time 0.700 Reading energy frame 80 time 0.800 Reading energy frame 90 time 0.900 Reading energy frame 100 time 1.000 Last energy frame read 100 time 1.000 30: 30: 30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<>/build/basic/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg 30: [ OK ] DhdlTest.ExtractDhdl (13 ms) 30: [----------] 1 test from DhdlTest (14 ms total) 30: 30: [----------] 1 test from OriresTest 30: [ RUN ] OriresTest.ExtractOrires 30: Opened /<>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision) 30: Note: file tpx version 111, software tpx version 112 30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all) 30: End your selection with 0 30: Selecting all 7 orientation restraints 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 30: [ OK ] OriresTest.ExtractOrires (14 ms) 30: [----------] 1 test from OriresTest (15 ms total) 30: 30: [----------] 3 tests from EnergyTest 30: [ RUN ] EnergyTest.ExtractEnergy 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: [ OK ] EnergyTest.ExtractEnergy (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyByNumber 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Pres. DC -268.49 3 8.52175 13.2804 (bar) 30: [ OK ] EnergyTest.ExtractEnergyByNumber (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyMixed 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: [ OK ] EnergyTest.ExtractEnergyMixed (4 ms) 30: [----------] 3 tests from EnergyTest (13 ms total) 30: 30: [----------] 2 tests from ViscosityTest 30: [ RUN ] ViscosityTest.EinsteinViscosity 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosity (11 ms) 30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (10 ms) 30: [----------] 2 tests from ViscosityTest (21 ms total) 30: 30: [----------] Global test environment tear-down 30: [==========] 7 tests from 4 test cases ran. (63 ms total) 30: [ PASSED ] 7 tests. 30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.08 sec test 31 Start 31: CompatibilityHelpersTests 31: Test command: /<>/build/basic/bin/compat-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/CompatibilityHelpersTests.xml" 31: Test timeout computed to be: 30 31: [==========] Running 1 test from 1 test case. 31: [----------] Global test environment set-up. 31: [----------] 1 test from CompatibilityHelper 31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 31: [----------] 1 test from CompatibilityHelper (0 ms total) 31: 31: [----------] Global test environment tear-down 31: [==========] 1 test from 1 test case ran. (0 ms total) 31: [ PASSED ] 1 test. 31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.01 sec test 32 Start 32: MdrunTests 32: Test command: /<>/build/basic/bin/mdrun-test "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunTests.xml" 32: Test timeout computed to be: 600 32: [==========] Running 30 tests from 11 test cases. 32: [----------] Global test environment set-up. 32: [----------] 6 tests from BondedInteractionsTest 32: [ RUN ] BondedInteractionsTest.NormalBondWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1992135812 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 20 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 129.240 0.186 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalBondWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 1349984628 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 22 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 131.063 0.183 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (18 ms) 32: [ RUN ] BondedInteractionsTest.NormalAngleWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1095083866 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 100.0 32: (ns/day) (hour/ns) 32: Performance: 176.259 0.136 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalAngleWorks (17 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 386017835 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 15 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 100.0 32: (ns/day) (hour/ns) 32: Performance: 183.580 0.131 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (16 ms) 32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1621099045 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 14 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 158.733 0.151 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (16 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 1762180824 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 16 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 100.0 32: (ns/day) (hour/ns) 32: Performance: 194.102 0.124 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (17 ms) 32: [----------] 6 tests from BondedInteractionsTest (105 ms total) 32: 32: [----------] 1 test from GromppTest 32: [ RUN ] GromppTest.EmptyMdpFileWorks 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 1298393798 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: [ OK ] GromppTest.EmptyMdpFileWorks (31 ms) 32: [----------] 1 test from GromppTest (31 ms total) 32: 32: [----------] 1 test from CompelTest 32: [ RUN ] CompelTest.SwapCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to 1250665155 32: Generated 330891 of the 330891 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 330891 of the 330891 1-4 parameter combinations 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 1 bonded neighbours molecule type 'NA' 32: Excluding 1 bonded neighbours molecule type 'CL' 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Split0 group 'Ch0' contains 83 atoms. 32: Split1 group 'Ch1' contains 83 atoms. 32: Solvent group 'SOL' contains 11931 atoms. 32: Swap group 'NA+' contains 19 atoms. 32: Swap group 'CL-' contains 19 atoms. 32: Number of degrees of freedom in T-Coupling group System is 27869.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: SWAP: Determining initial numbers of ions per compartment. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 1 Mb of data 32: 32: Writing final coordinates. 32: 32: NOTE: 32 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.488 0.488 100.0 32: (ns/day) (hour/ns) 32: Performance: 2.656 9.035 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.3 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Fri Aug 24 09:27:34 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Copying channel fluxes from checkpoint file data 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: NOTE: 28 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.376 0.376 100.0 32: (ns/day) (hour/ns) 32: Performance: 3.449 6.959 32: [ OK ] CompelTest.SwapCanRun (1477 ms) 32: [----------] 1 test from CompelTest (1477 ms total) 32: 32: [----------] 1 test from ImdTest 32: [ RUN ] ImdTest.ImdCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to 1593339589 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD). 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 50, rlist from 1.121 to 1.344 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: IMD: Enabled. This simulation will accept incoming IMD connections. 32: IMD: You chose a port number < 1. Will automatically assign a free port. 32: IMD: Pulling from IMD remote is enabled (-imdpull). 32: IMD: Turning on IMD - port for incoming requests is 0. 32: IMD: Setting up incoming socket. 32: IMD: Listening for IMD connection on port 53161. 32: IMD: -imdwait not set, starting simulation. 32: starting mdrun 'spc2' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 245.216 0.098 32: [ OK ] ImdTest.ImdCanRun (22 ms) 32: [----------] 1 test from ImdTest (22 ms total) 32: 32: [----------] 2 tests from MdrunTerminationTest 32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1923023326 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 6: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 222.802 0.108 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.3 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Fri Aug 24 09:27:35 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 9 steps, 0.0 ps (continuing from step 7, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.002 0.002 100.0 32: (ns/day) (hour/ns) 32: Performance: 110.026 0.218 32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (31 ms) 32: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1895415317 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 1, rlist from 1.024 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 6: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 216.869 0.111 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.3 (single precision) 32: 32: Reading checkpoint file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.cpt generated: Fri Aug 24 09:27:35 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.024 to 1.244 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 9 steps, 0.0 ps (continuing from step 7, 0.0 ps). 32: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 78.484 0.306 32: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (32 ms) 32: [----------] 2 tests from MdrunTerminationTest (63 ms total) 32: 32: [----------] 1 test from PmeTest 32: [ RUN ] PmeTest.ReproducesEnergies 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -955587377 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: Estimate for the relative computational load of the PME mesh part: 1.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: The optimal PME mesh load for parallel simulations is below 0.5 32: and for highly parallel simulations between 0.25 and 0.33, 32: for higher performance, increase the cut-off and the PME grid spacing. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: Calculating fourier grid dimensions for X Y Z 32: Using a fourier grid of 28x28x28, spacing 0.108 0.108 0.108 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.037 0.037 100.0 32: (ns/day) (hour/ns) 32: Performance: 49.683 0.483 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.037 0.037 100.0 32: (ns/day) (hour/ns) 32: Performance: 49.673 0.483 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.037 0.037 100.0 32: (ns/day) (hour/ns) 32: Performance: 49.507 0.485 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (8131 ms) 32: [----------] 1 test from PmeTest (8131 ms total) 32: 32: [----------] 3 tests from Checking/InitialConstraintsTest 32: [ RUN ] Checking/InitialConstraintsTest.Works/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -804776164 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 46.445 0.517 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (44 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 748372204 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 42.375 0.566 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (44 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: Integrator method md-vv-avek is implemented primarily for validation 32: purposes; for molecular dynamics, you should probably be using md or md-vv 32: 32: Setting the LD random seed to -97397036 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018.3 (single precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 44.931 0.534 32: Opened /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as single precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (46 ms) 32: [----------] 3 tests from Checking/InitialConstraintsTest (134 ms total) 32: 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 969819312 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr' 32: 32: trr version: GMX_trn_file (single precision) 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 270.338 0.089 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (17 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1357705962 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 186.318 0.129 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -192534900 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 100.0 32: (ns/day) (hour/ns) 32: Performance: 417.498 0.057 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (16 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1805178770 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro' 32: 32: Reading frames from gro file '', 6 atoms. 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 257.378 0.093 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1503245748 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb' 32: 32: Reading frames from pdb file Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: 't= 0.00000', 6 atoms 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 339.473 0.071 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -207019004 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96' 32: 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 275.057 0.087 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (15 ms) 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (93 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/Trajectories 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -83296719 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.007 0.007 100.0 32: (ns/day) (hour/ns) 32: Performance: 89.627 0.268 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (48 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -876086661 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.007 0.007 100.0 32: (ns/day) (hour/ns) 32: Performance: 87.080 0.276 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (48 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1238445090 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.006 0.006 100.0 32: (ns/day) (hour/ns) 32: Performance: 93.316 0.257 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (47 ms) 32: [----------] 3 tests from MdrunCanWrite/Trajectories (144 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -326005127 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 55.849 0.430 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (45 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -33078790 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 55.357 0.434 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (46 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: 32: /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1048196826 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018.3 (single precision) 32: Changing nstlist from 10 to 80, rlist from 1.022 to 1.293 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 51.674 0.464 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (46 ms) 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (137 ms total) 32: 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1641692691 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 37.317 0.643 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (20 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -350253088 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 43.936 0.546 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (19 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 32: 32: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1166320647 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018.3 (single precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 39.935 0.601 32: Reading frame 0 time 0.000 32: # Atoms 3 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (19 ms) 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (59 ms total) 32: 32: [----------] Global test environment tear-down 32: [==========] 30 tests from 11 test cases ran. (10396 ms total) 32: [ PASSED ] 30 tests. 32/33 Test #32: MdrunTests ....................... Passed 10.44 sec test 33 Start 33: MdrunMpiTests 33: Test command: /<>/build/basic/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic/Testing/Temporary/MdrunMpiTests.xml" 33: Test timeout computed to be: 600 33: [==========] Running 3 tests from 3 test cases. 33: [----------] Global test environment set-up. 33: [----------] 1 test from MultiSimTerminationTest 33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) 33: [----------] 1 test from MultiSimTerminationTest (0 ms total) 33: 33: [----------] 1 test from ReplicaExchangeTerminationTest 33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (1 ms) 33: [----------] 1 test from ReplicaExchangeTerminationTest (1 ms total) 33: 33: [----------] 1 test from DomainDecompositionSpecialCasesTest 33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks 33: 33: NOTE 1 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: For a correct single-point energy evaluation with nsteps = 0, use 33: continuation = yes to avoid constraining the input coordinates. 33: 33: Setting the LD random seed to 52101708 33: Generated 3 of the 3 non-bonded parameter combinations 33: Generating 1-4 interactions: fudge = 0.5 33: Generated 3 of the 3 1-4 parameter combinations 33: Excluding 2 bonded neighbours molecule type 'SOL' 33: Removing all charge groups because cutoff-scheme=Verlet 33: Number of degrees of freedom in T-Coupling group rest is 9.00 33: 33: NOTE 2 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: NVE simulation with an initial temperature of zero: will use a Verlet 33: buffer of 10%. Check your energy drift! 33: 33: 33: NOTE 3 [file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: You are using a plain Coulomb cut-off, which might produce artifacts. 33: You might want to consider using PME electrostatics. 33: 33: 33: 33: There were 3 notes 33: Reading file /<>/build/basic/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018.3 (single precision) 33: Can not increase nstlist because an NVE ensemble is used 33: Using 2 MPI threads 33: Using 1 OpenMP thread per tMPI thread 33: 33: 33: NOTE: The number of threads is not equal to the number of (logical) cores 33: and the -pin option is set to auto: will not pin threads to cores. 33: This can lead to significant performance degradation. 33: Consider using -pin on (and -pinoffset in case you run multiple jobs). 33: starting mdrun 'spc2' 33: 0 steps, 0.0 ps. 33: 33: NOTE: 15 % of the run time was spent in domain decomposition, 33: 51 % of the run time was spent in pair search, 33: you might want to increase nstlist (this has no effect on accuracy) 33: 33: Core t (s) Wall t (s) (%) 33: Time: 0.001 0.001 199.9 33: (ns/day) (hour/ns) 33: Performance: 148.763 0.161 33: This run will generate roughly 0 Mb of data 33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (20 ms) 33: [----------] 1 test from DomainDecompositionSpecialCasesTest (20 ms total) 33: 33: [----------] Global test environment tear-down 33: [==========] 3 tests from 3 test cases ran. (21 ms total) 33: [ PASSED ] 3 tests. 33: 33: YOU HAVE 4 DISABLED TESTS 33: 33/33 Test #33: MdrunMpiTests .................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 33 Label Time Summary: GTest = 13.82 sec*proc (33 tests) IntegrationTest = 10.53 sec*proc (3 tests) MpiTest = 0.10 sec*proc (3 tests) UnitTest = 3.29 sec*proc (30 tests) Total Test time (real) = 13.88 sec /usr/bin/make -j4 -C build/basic-dp tests make[1]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 96 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/basic-dp /<>/build/basic-dp/src/external/gmock-1.7.0 /<>/build/basic-dp/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' Scanning dependencies of target gmock make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc [ 1%] Built target tng_io_obj [ 1%] Built target mdrun_test_objlib /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/onlinehelp/tests /<>/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= [ 1%] Built target mdrun_objlib /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/analysisdata/tests /<>/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test-shared Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp Scanning dependencies of target analysisdata-test-shared make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o -c /<>/src/gromacs/analysisdata/tests/datatest.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -c /<>/src/gromacs/analysisdata/tests/mock_datamodule.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target onlinehelp-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' [ 1%] Built target mdrunutility-test-shared cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target libgromacs make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target analysisdata-test-shared cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/basic-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/basic-dp' [ 78%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/basic-dp /<>/build/basic-dp/src/testutils /<>/build/basic-dp/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/basic-dp/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/basic-dp/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/basic-dp' [ 80%] Built target testutils /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic-dp /<>/build/basic-dp/src/testutils/tests /<>/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/basic-dp /<>/build/basic-dp/src/testutils/tests /<>/build/basic-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdlib/tests /<>/build/basic-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build Scanning dependencies of target mdrun-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-mpi-test.dir/build Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o -c /<>/src/programs/mdrun/tests/multisim.cpp make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.3.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 80%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/applied-forces/tests /<>/build/basic-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o -c /<>/src/programs/mdrun/tests/multisimtest.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o -c /<>/src/programs/mdrun/tests/replicaexchange.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target applied-forces-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/listed-forces/tests /<>/build/basic-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o -c /<>/src/programs/mdrun/tests/domain_decomposition.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-mpi-test.dir/multisim.cpp.o CMakeFiles/mdrun-mpi-test.dir/multisimtest.cpp.o CMakeFiles/mdrun-mpi-test.dir/replicaexchange.cpp.o CMakeFiles/mdrun-mpi-test.dir/domain_decomposition.cpp.o CMakeFiles/mdrun-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target mdrun-mpi-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/commandline/tests /<>/build/basic-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/basic-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 81%] Built target listed-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/ewald/tests /<>/build/basic-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/basic-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_d.so.3.3.0 ../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 82%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/fft/tests /<>/build/basic-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 83%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gpu_utils/tests /<>/build/basic-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/basic-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 84%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/hardware/tests /<>/build/basic-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 84%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/math/tests /<>/build/basic-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/mdrunutility/tests /<>/build/basic-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 85%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/onlinehelp/tests /<>/build/basic-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 86%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/options/tests /<>/build/basic-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/basic-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 86%] Built target ewald-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/random/tests /<>/build/basic-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 87%] Built target commandline-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/tables/tests /<>/build/basic-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 88%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/taskassignment/tests /<>/build/basic-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 88%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/utility/tests /<>/build/basic-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/fileio/tests /<>/build/basic-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/basic-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/pulling/tests /<>/build/basic-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/basic-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 89%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/awh/tests /<>/build/basic-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 90%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/simd/tests /<>/build/basic-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 90%] Built target awh-test /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxana/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gmxana/tests /<>/build/basic-dp/src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxana-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build.make src/gromacs/gmxana/tests/CMakeFiles/gmxana-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_traj.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o -c /<>/src/gromacs/gmxana/tests/gmx_trjconv.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxana/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxana/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gmxana/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxana-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxana-test.dir/gmx_traj.cpp.o CMakeFiles/gmxana-test.dir/gmx_trjconv.cpp.o CMakeFiles/gmxana-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxana-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 90%] Built target gmxana-test /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gmxpreprocess/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/DependInfo.cmake --color= Scanning dependencies of target gmxpreprocess-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build.make src/gromacs/gmxpreprocess/tests/CMakeFiles/gmxpreprocess-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/genconf.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/insert-molecules.cpp cd /<>/build/basic-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 91%] Built target options-test /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/correlationfunctions/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/correlationfunctions/tests /<>/build/basic-dp/src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/DependInfo.cmake --color= Scanning dependencies of target correlations-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build.make src/gromacs/correlationfunctions/tests/CMakeFiles/correlations-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/autocorr.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/autocorr.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/readir.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/manyautocorrelation.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o -c /<>/src/gromacs/gmxpreprocess/tests/solvate.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/correlationdataset.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/expfit.cpp.o -c /<>/src/gromacs/correlationfunctions/tests/expfit.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gmxpreprocess/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmxpreprocess-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gmxpreprocess-test.dir/genconf.cpp.o CMakeFiles/gmxpreprocess-test.dir/insert-molecules.cpp.o CMakeFiles/gmxpreprocess-test.dir/readir.cpp.o CMakeFiles/gmxpreprocess-test.dir/solvate.cpp.o CMakeFiles/gmxpreprocess-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gmxpreprocess-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 91%] Built target gmxpreprocess-test /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/analysisdata/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/analysisdata/tests /<>/build/basic-dp/src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/DependInfo.cmake --color= Scanning dependencies of target analysisdata-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build.make src/gromacs/analysisdata/tests/CMakeFiles/analysisdata-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o -c /<>/src/gromacs/analysisdata/tests/analysisdata.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/correlationfunctions/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/correlationfunctions/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /<>/build/basic-dp/src/gromacs/correlationfunctions/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/correlations-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/correlations-test.dir/autocorr.cpp.o CMakeFiles/correlations-test.dir/manyautocorrelation.cpp.o CMakeFiles/correlations-test.dir/correlationdataset.cpp.o CMakeFiles/correlations-test.dir/expfit.cpp.o CMakeFiles/correlations-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/correlations-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 92%] Built target correlations-test /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/selection/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/selection/tests /<>/build/basic-dp/src/gromacs/selection/tests/CMakeFiles/selection-test.dir/DependInfo.cmake --color= Scanning dependencies of target selection-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build.make src/gromacs/selection/tests/CMakeFiles/selection-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/indexutil.cpp.o -c /<>/src/gromacs/selection/tests/indexutil.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/nbsearch.cpp.o -c /<>/src/gromacs/selection/tests/nbsearch.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o -c /<>/src/gromacs/analysisdata/tests/arraydata.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/poscalc.cpp.o -c /<>/src/gromacs/selection/tests/poscalc.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/average.cpp.o -c /<>/src/gromacs/analysisdata/tests/average.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectioncollection.cpp.o -c /<>/src/gromacs/selection/tests/selectioncollection.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/histogram.cpp.o -c /<>/src/gromacs/analysisdata/tests/histogram.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o -c /<>/src/gromacs/analysisdata/tests/lifetime.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/analysisdata/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/analysisdata/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/selectionoption.cpp.o -c /<>/src/gromacs/selection/tests/selectionoption.cpp cd /<>/build/basic-dp/src/gromacs/analysisdata/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/analysisdata-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/analysisdata-test.dir/analysisdata.cpp.o CMakeFiles/analysisdata-test.dir/arraydata.cpp.o CMakeFiles/analysisdata-test.dir/average.cpp.o CMakeFiles/analysisdata-test.dir/histogram.cpp.o CMakeFiles/analysisdata-test.dir/lifetime.cpp.o CMakeFiles/analysisdata-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/analysisdata-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 92%] Built target analysisdata-test /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/trajectoryanalysis/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target trajectoryanalysis-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build.make src/gromacs/trajectoryanalysis/tests/CMakeFiles/trajectoryanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/moduletest.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/clustsize.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/cmdlinerunner.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/basic-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 93%] Built target simd-test /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/energyanalysis/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/energyanalysis/tests /<>/build/basic-dp/src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/DependInfo.cmake --color= Scanning dependencies of target energyanalysis-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build.make src/gromacs/energyanalysis/tests/CMakeFiles/energyanalysis-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o -c /<>/src/gromacs/energyanalysis/tests/legacyenergy.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/toputils.cpp.o -c /<>/src/gromacs/selection/tests/toputils.cpp cd /<>/build/basic-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/angle.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 95%] Built target utility-test /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/basic-dp /<>/build/basic-dp/src/gromacs/compat/tests /<>/build/basic-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/selection/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/selection/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/energyanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/distance.cpp cd /<>/build/basic-dp/src/gromacs/selection/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/selection-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/selection-test.dir/indexutil.cpp.o CMakeFiles/selection-test.dir/nbsearch.cpp.o CMakeFiles/selection-test.dir/poscalc.cpp.o CMakeFiles/selection-test.dir/selectioncollection.cpp.o CMakeFiles/selection-test.dir/selectionoption.cpp.o CMakeFiles/selection-test.dir/toputils.cpp.o CMakeFiles/selection-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/selection-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/energyanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/energyanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/energyanalysis-test.dir/legacyenergy.cpp.o CMakeFiles/energyanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/energyanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/basic-dp' [ 96%] Built target selection-test /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/basic-dp' Scanning dependencies of target mdrun-test make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun-test.dir/build make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o -c /<>/src/programs/mdrun/tests/tabulated_bonded_interactions.cpp [ 96%] Built target energyanalysis-test cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/grompp.cpp.o -c /<>/src/programs/mdrun/tests/grompp.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/freevolume.cpp cd /<>/build/basic-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 96%] Built target compat-test cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o -c /<>/src/programs/mdrun/tests/initialconstraints.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/rerun.cpp.o -c /<>/src/programs/mdrun/tests/rerun.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/pairdist.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o -c /<>/src/programs/mdrun/tests/trajectory_writing.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/rdf.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o -c /<>/src/programs/mdrun/tests/trajectoryreader.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/sasa.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o -c /<>/src/programs/mdrun/tests/compressed_x_output.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o -c /<>/src/programs/mdrun/tests/swapcoords.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/select.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o -c /<>/src/programs/mdrun/tests/interactiveMD.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/termination.cpp.o -c /<>/src/programs/mdrun/tests/termination.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/surfacearea.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/pmetest.cpp.o -c /<>/src/programs/mdrun/tests/pmetest.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/programs/mdrun/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/trajectory.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o -c /<>/src/gromacs/trajectoryanalysis/tests/unionfind.cpp cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/c++ -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/trajectoryanalysis/tests\" -DTEST_TEMP_PATH=\"/<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests/Testing/Temporary\" -I/<>/build/basic-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/basic-dp/src/programs/mdrun/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun-test.dir/tabulated_bonded_interactions.cpp.o CMakeFiles/mdrun-test.dir/grompp.cpp.o CMakeFiles/mdrun-test.dir/initialconstraints.cpp.o CMakeFiles/mdrun-test.dir/rerun.cpp.o CMakeFiles/mdrun-test.dir/trajectory_writing.cpp.o CMakeFiles/mdrun-test.dir/trajectoryreader.cpp.o CMakeFiles/mdrun-test.dir/compressed_x_output.cpp.o CMakeFiles/mdrun-test.dir/swapcoords.cpp.o CMakeFiles/mdrun-test.dir/interactiveMD.cpp.o CMakeFiles/mdrun-test.dir/termination.cpp.o CMakeFiles/mdrun-test.dir/pmetest.cpp.o CMakeFiles/mdrun-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrun_test_objlib.dir/energyreader.cpp.o CMakeFiles/mdrun_test_objlib.dir/mdruncomparisonfixture.cpp.o CMakeFiles/mdrun_test_objlib.dir/moduletest.cpp.o CMakeFiles/mdrun_test_objlib.dir/terminationhelper.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o ../../CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../../../bin/mdrun-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [ 98%] Built target mdrun-test cd /<>/build/basic-dp/src/gromacs/trajectoryanalysis/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/trajectoryanalysis-test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/trajectoryanalysis-test.dir/moduletest.cpp.o CMakeFiles/trajectoryanalysis-test.dir/clustsize.cpp.o CMakeFiles/trajectoryanalysis-test.dir/cmdlinerunner.cpp.o CMakeFiles/trajectoryanalysis-test.dir/angle.cpp.o CMakeFiles/trajectoryanalysis-test.dir/distance.cpp.o CMakeFiles/trajectoryanalysis-test.dir/freevolume.cpp.o CMakeFiles/trajectoryanalysis-test.dir/pairdist.cpp.o CMakeFiles/trajectoryanalysis-test.dir/rdf.cpp.o CMakeFiles/trajectoryanalysis-test.dir/sasa.cpp.o CMakeFiles/trajectoryanalysis-test.dir/select.cpp.o CMakeFiles/trajectoryanalysis-test.dir/surfacearea.cpp.o CMakeFiles/trajectoryanalysis-test.dir/trajectory.cpp.o CMakeFiles/trajectoryanalysis-test.dir/unionfind.cpp.o CMakeFiles/trajectoryanalysis-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/datatest.cpp.o ../../analysisdata/tests/CMakeFiles/analysisdata-test-shared.dir/mock_datamodule.cpp.o -o ../../../../bin/trajectoryanalysis-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_d.so.3.3.0 ../../../../lib/libgmock.a -lpthread -fopenmp -lm make[4]: Leaving directory '/<>/build/basic-dp' [100%] Built target trajectoryanalysis-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/basic-dp /<>/build/basic-dp /<>/build/basic-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/basic-dp' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/basic-dp' [100%] Built target tests make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 0 make[2]: Leaving directory '/<>/build/basic-dp' make[1]: Leaving directory '/<>/build/basic-dp' (cd build/basic-dp; LD_LIBRARY_PATH=/<>/build/basic-dp/lib ctest -V) UpdateCTestConfiguration from :/<>/build/basic-dp/DartConfiguration.tcl Parse Config file:/<>/build/basic-dp/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/basic-dp/DartConfiguration.tcl Parse Config file:/<>/build/basic-dp/DartConfiguration.tcl Test project /<>/build/basic-dp Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/basic-dp/bin/testutils-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) 1: [----------] 34 tests from ReferenceDataTest (12 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (21 ms total) 1: [ PASSED ] 59 tests. 1/33 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /<>/build/basic-dp/bin/testutils-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (1 ms) 2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/33 Test #2: TestUtilsMpiUnitTests ............ Passed 0.01 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/basic-dp/bin/mdlib-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/33 Test #3: MdlibUnitTest .................... Passed 0.02 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/basic-dp/bin/applied-forces-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/33 Test #4: AppliedForcesUnitTest ............ Passed 0.01 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/basic-dp/bin/listed-forces-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/33 Test #5: ListedForcesTest ................. Passed 0.01 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/basic-dp/bin/commandline-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (1 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (12 ms total) 6: [ PASSED ] 57 tests. 6/33 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/basic-dp/bin/ewald-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (3 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (53 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (107 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (30 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (18 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (28 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (30 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (77 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (391 ms total) 7: [ PASSED ] 257 tests. 7/33 Test #7: EwaldUnitTests ................... Passed 0.44 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/basic-dp/bin/fft-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (5 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (8 ms) 8: [----------] 2 tests from ManyFFTTest (13 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 8: [----------] 1 test from FFTTest (3 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (4 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (18 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (37 ms total) 8: [ PASSED ] 14 tests. 8/33 Test #8: FFTUnitTests ..................... Passed 0.05 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/basic-dp/bin/gpu_utils-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (3 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = double 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (2 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (2 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (4 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (4 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (10 ms total) 9: [ PASSED ] 30 tests. 9/33 Test #9: GpuUtilsUnitTests ................ Passed 0.02 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/basic-dp/bin/hardware-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (8 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (6 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (6 ms) 10: [----------] 4 tests from HardwareTopologyTest (27 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (27 ms total) 10: [ PASSED ] 4 tests. 10/33 Test #10: HardwareUnitTests ................ Passed 0.04 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/basic-dp/bin/math-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (0 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (1 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (1 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (1 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 11: [----------] 21 tests from FunctionTest (4 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (4 ms total) 11: [ PASSED ] 31 tests. 11/33 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/basic-dp/bin/mdrunutility-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) 12: [----------] 17 tests from ThreadAffinityTest (6 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (6 ms total) 12: [ PASSED ] 17 tests. 12/33 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /<>/build/basic-dp/bin/mdrunutility-mpi-test "-ntmpi" "4" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (5 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (12 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (7 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (8 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (23 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (35 ms total) 13: [ PASSED ] 13 tests. 13/33 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.05 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/basic-dp/bin/onlinehelp-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (1 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (1 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (0 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 14: [----------] 11 tests from HelpWriterContextTest (1 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (3 ms total) 14: [ PASSED ] 22 tests. 14/33 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/basic-dp/bin/options-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (0 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (1 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 15: [----------] 1 test from OptionsTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (1 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (1 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (1 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (1 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (1 ms) 15: [----------] 8 tests from TreeValueSupportTest (2 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (10 ms total) 15: [ PASSED ] 110 tests. 15/33 Test #15: OptionsUnitTests ................. Passed 0.03 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/basic-dp/bin/random-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (0 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (0 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (0 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (1 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from NormalDistributionTest (1 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (0 ms) 16: [----------] 1 test from SeedTest (0 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (1 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (2 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (8 ms total) 16: [ PASSED ] 44 tests. 16/33 Test #16: RandomUnitTests .................. Passed 0.03 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/basic-dp/bin/table-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 20 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (2 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (38 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (73 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (78 ms) 17: [ RUN ] SplineTableTest/0.Simd 17: [ OK ] SplineTableTest/0.Simd (18 ms) 17: [ RUN ] SplineTableTest/0.SimdTwoFunctions 17: [ OK ] SplineTableTest/0.SimdTwoFunctions (69 ms) 17: [----------] 10 tests from SplineTableTest/0 (288 ms total) 17: 17: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (3 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (90 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (180 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (188 ms) 17: [ RUN ] SplineTableTest/1.Simd 17: [ OK ] SplineTableTest/1.Simd (41 ms) 17: [ RUN ] SplineTableTest/1.SimdTwoFunctions 17: [ OK ] SplineTableTest/1.SimdTwoFunctions (168 ms) 17: [----------] 10 tests from SplineTableTest/1 (680 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 20 tests from 2 test cases ran. (968 ms total) 17: [ PASSED ] 20 tests. 17/33 Test #17: TableUnitTests ................... Passed 0.99 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/basic-dp/bin/taskassignment-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (1 ms total) 18: [ PASSED ] 3 tests. 18/33 Test #18: TaskAssignmentUnitTests .......... Passed 0.01 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/basic-dp/bin/utility-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (0 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 19: [----------] 6 tests from TreeValueTransformTest (1 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (1 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (0 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (1 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (1 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 19: [----------] 2 tests from PathTest (0 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 19: [----------] 7 tests from StringUtilityTest (1 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (0 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (0 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (0 ms) 19: [----------] 1 test from formatAndJoinTest (0 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (1 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (0 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (0 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (1 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (14 ms total) 19: [ PASSED ] 307 tests. 19/33 Test #19: UtilityUnitTests ................. Passed 0.04 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/basic-dp/bin/fileio-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (0 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (0 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (0 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (6 ms total) 20: [ PASSED ] 15 tests. 20/33 Test #20: FileIOTests ...................... Passed 0.02 sec test 21 Start 21: PullTest 21: Test command: /<>/build/basic-dp/bin/pull-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (0 ms total) 21: [ PASSED ] 5 tests. 21/33 Test #21: PullTest ......................... Passed 0.01 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/basic-dp/bin/awh-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (1 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (2 ms) 22: [----------] 1 test from gridTest (2 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) 22: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (0 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (8 ms total) 22: [ PASSED ] 12 tests. 22/33 Test #22: AwhTest .......................... Passed 0.02 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/basic-dp/bin/simd-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 236 tests from 19 test cases. 23: [----------] Global test environment set-up. 23: [----------] 6 tests from SimdBootstrapTest 23: [ RUN ] SimdBootstrapTest.loadStore 23: [ OK ] SimdBootstrapTest.loadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.loadU 23: [ OK ] SimdBootstrapTest.loadU (0 ms) 23: [ RUN ] SimdBootstrapTest.storeU 23: [ OK ] SimdBootstrapTest.storeU (0 ms) 23: [ RUN ] SimdBootstrapTest.loadStoreI 23: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 23: [ RUN ] SimdBootstrapTest.loadUI 23: [ OK ] SimdBootstrapTest.loadUI (0 ms) 23: [ RUN ] SimdBootstrapTest.storeUI 23: [ OK ] SimdBootstrapTest.storeUI (0 ms) 23: [----------] 6 tests from SimdBootstrapTest (0 ms total) 23: 23: [----------] 1 test from SimdTest 23: [ RUN ] SimdTest.GmxAligned 23: [ OK ] SimdTest.GmxAligned (0 ms) 23: [----------] 1 test from SimdTest (0 ms total) 23: 23: [----------] 42 tests from SimdFloatingpointTest 23: [ RUN ] SimdFloatingpointTest.setZero 23: [ OK ] SimdFloatingpointTest.setZero (0 ms) 23: [ RUN ] SimdFloatingpointTest.set 23: [ OK ] SimdFloatingpointTest.set (0 ms) 23: [ RUN ] SimdFloatingpointTest.add 23: [ OK ] SimdFloatingpointTest.add (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskAdd 23: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 23: [ RUN ] SimdFloatingpointTest.sub 23: [ OK ] SimdFloatingpointTest.sub (0 ms) 23: [ RUN ] SimdFloatingpointTest.mul 23: [ OK ] SimdFloatingpointTest.mul (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzMul 23: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 23: [ RUN ] SimdFloatingpointTest.fma 23: [ OK ] SimdFloatingpointTest.fma (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzFma 23: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fms 23: [ OK ] SimdFloatingpointTest.fms (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnma 23: [ OK ] SimdFloatingpointTest.fnma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnms 23: [ OK ] SimdFloatingpointTest.fnms (0 ms) 23: [ RUN ] SimdFloatingpointTest.abs 23: [ OK ] SimdFloatingpointTest.abs (0 ms) 23: [ RUN ] SimdFloatingpointTest.neg 23: [ OK ] SimdFloatingpointTest.neg (0 ms) 23: [ RUN ] SimdFloatingpointTest.and 23: [ OK ] SimdFloatingpointTest.and (0 ms) 23: [ RUN ] SimdFloatingpointTest.or 23: [ OK ] SimdFloatingpointTest.or (0 ms) 23: [ RUN ] SimdFloatingpointTest.xor 23: [ OK ] SimdFloatingpointTest.xor (0 ms) 23: [ RUN ] SimdFloatingpointTest.andNot 23: [ OK ] SimdFloatingpointTest.andNot (0 ms) 23: [ RUN ] SimdFloatingpointTest.max 23: [ OK ] SimdFloatingpointTest.max (0 ms) 23: [ RUN ] SimdFloatingpointTest.min 23: [ OK ] SimdFloatingpointTest.min (0 ms) 23: [ RUN ] SimdFloatingpointTest.round 23: [ OK ] SimdFloatingpointTest.round (0 ms) 23: [ RUN ] SimdFloatingpointTest.roundMode 23: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 23: [ RUN ] SimdFloatingpointTest.trunc 23: [ OK ] SimdFloatingpointTest.trunc (0 ms) 23: [ RUN ] SimdFloatingpointTest.frexp 23: [ OK ] SimdFloatingpointTest.frexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.ldexp 23: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.rsqrt 23: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRsqrt 23: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.rcp 23: [ OK ] SimdFloatingpointTest.rcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRcp 23: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.selectByNotMask 23: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpNe 23: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLe 23: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLt 23: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 23: [ RUN ] SimdFloatingpointTest.testBits 23: [ OK ] SimdFloatingpointTest.testBits (0 ms) 23: [ RUN ] SimdFloatingpointTest.andB 23: [ OK ] SimdFloatingpointTest.andB (0 ms) 23: [ RUN ] SimdFloatingpointTest.orB 23: [ OK ] SimdFloatingpointTest.orB (0 ms) 23: [ RUN ] SimdFloatingpointTest.anyTrueB 23: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 23: [ RUN ] SimdFloatingpointTest.blend 23: [ OK ] SimdFloatingpointTest.blend (0 ms) 23: [ RUN ] SimdFloatingpointTest.reduce 23: [ OK ] SimdFloatingpointTest.reduce (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 23: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 23: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 23: [----------] 42 tests from SimdFloatingpointTest (0 ms total) 23: 23: [----------] 13 tests from SimdFloatingpointUtilTest 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 23: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 23: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 23: [----------] 13 tests from SimdFloatingpointUtilTest (1 ms total) 23: 23: [----------] 3 tests from SimdVectorOperationsTest 23: [ RUN ] SimdVectorOperationsTest.iprod 23: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 23: [ RUN ] SimdVectorOperationsTest.norm2 23: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 23: [ RUN ] SimdVectorOperationsTest.cprod 23: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 23: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 23: 23: [----------] 45 tests from SimdMathTest 23: [ RUN ] SimdMathTest.copysign 23: [ OK ] SimdMathTest.copysign (0 ms) 23: [ RUN ] SimdMathTest.invsqrt 23: [ OK ] SimdMathTest.invsqrt (1 ms) 23: [ RUN ] SimdMathTest.maskzInvsqrt 23: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdMathTest.invsqrtPair 23: [ OK ] SimdMathTest.invsqrtPair (2 ms) 23: [ RUN ] SimdMathTest.sqrt 23: [ OK ] SimdMathTest.sqrt (1 ms) 23: [ RUN ] SimdMathTest.sqrtUnsafe 23: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 23: [ RUN ] SimdMathTest.inv 23: [ OK ] SimdMathTest.inv (1 ms) 23: [ RUN ] SimdMathTest.maskzInv 23: [ OK ] SimdMathTest.maskzInv (0 ms) 23: [ RUN ] SimdMathTest.log 23: [ OK ] SimdMathTest.log (2 ms) 23: [ RUN ] SimdMathTest.exp2 23: [ OK ] SimdMathTest.exp2 (3 ms) 23: [ RUN ] SimdMathTest.exp2Unsafe 23: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 23: [ RUN ] SimdMathTest.exp 23: [ OK ] SimdMathTest.exp (5 ms) 23: [ RUN ] SimdMathTest.expUnsafe 23: [ OK ] SimdMathTest.expUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erf 23: [ OK ] SimdMathTest.erf (2 ms) 23: [ RUN ] SimdMathTest.erfc 23: [ OK ] SimdMathTest.erfc (3 ms) 23: [ RUN ] SimdMathTest.sin 23: [ OK ] SimdMathTest.sin (2 ms) 23: [ RUN ] SimdMathTest.cos 23: [ OK ] SimdMathTest.cos (3 ms) 23: [ RUN ] SimdMathTest.tan 23: [ OK ] SimdMathTest.tan (7 ms) 23: [ RUN ] SimdMathTest.asin 23: [ OK ] SimdMathTest.asin (1 ms) 23: [ RUN ] SimdMathTest.acos 23: [ OK ] SimdMathTest.acos (1 ms) 23: [ RUN ] SimdMathTest.atan 23: [ OK ] SimdMathTest.atan (1 ms) 23: [ RUN ] SimdMathTest.atan2 23: [ OK ] SimdMathTest.atan2 (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrection 23: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrection 23: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 23: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracy 23: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.invSingleAccuracy 23: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.logSingleAccuracy 23: [ OK ] SimdMathTest.logSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracy 23: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 23: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracy 23: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erfSingleAccuracy 23: [ OK ] SimdMathTest.erfSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.erfcSingleAccuracy 23: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.sinSingleAccuracy 23: [ OK ] SimdMathTest.sinSingleAccuracy (3 ms) 23: [ RUN ] SimdMathTest.cosSingleAccuracy 23: [ OK ] SimdMathTest.cosSingleAccuracy (3 ms) 23: [ RUN ] SimdMathTest.tanSingleAccuracy 23: [ OK ] SimdMathTest.tanSingleAccuracy (7 ms) 23: [ RUN ] SimdMathTest.asinSingleAccuracy 23: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.acosSingleAccuracy 23: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atanSingleAccuracy 23: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atan2SingleAccuracy 23: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (3 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 23: [----------] 45 tests from SimdMathTest (83 ms total) 23: 23: [----------] 1 test from EmptyArrayRefTest 23: [ RUN ] EmptyArrayRefTest.IsEmpty 23: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 23: [----------] 1 test from EmptyArrayRefTest (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/0.Assignment 23: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/1.Assignment 23: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/0.Basic 23: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/1.Basic 23: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 23: 23: [----------] 23 tests from SimdIntegerTest 23: [ RUN ] SimdIntegerTest.setZero 23: [ OK ] SimdIntegerTest.setZero (0 ms) 23: [ RUN ] SimdIntegerTest.set 23: [ OK ] SimdIntegerTest.set (0 ms) 23: [ RUN ] SimdIntegerTest.add 23: [ OK ] SimdIntegerTest.add (0 ms) 23: [ RUN ] SimdIntegerTest.sub 23: [ OK ] SimdIntegerTest.sub (0 ms) 23: [ RUN ] SimdIntegerTest.mul 23: [ OK ] SimdIntegerTest.mul (0 ms) 23: [ RUN ] SimdIntegerTest.and 23: [ OK ] SimdIntegerTest.and (0 ms) 23: [ RUN ] SimdIntegerTest.andNot 23: [ OK ] SimdIntegerTest.andNot (0 ms) 23: [ RUN ] SimdIntegerTest.or 23: [ OK ] SimdIntegerTest.or (0 ms) 23: [ RUN ] SimdIntegerTest.xor 23: [ OK ] SimdIntegerTest.xor (0 ms) 23: [ RUN ] SimdIntegerTest.extract 23: [ OK ] SimdIntegerTest.extract (0 ms) 23: [ RUN ] SimdIntegerTest.cvtR2I 23: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvttR2I 23: [ OK ] SimdIntegerTest.cvttR2I (1 ms) 23: [ RUN ] SimdIntegerTest.cvtI2R 23: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpLt 23: [ OK ] SimdIntegerTest.cmpLt (0 ms) 23: [ RUN ] SimdIntegerTest.testBits 23: [ OK ] SimdIntegerTest.testBits (0 ms) 23: [ RUN ] SimdIntegerTest.andB 23: [ OK ] SimdIntegerTest.andB (0 ms) 23: [ RUN ] SimdIntegerTest.orB 23: [ OK ] SimdIntegerTest.orB (0 ms) 23: [ RUN ] SimdIntegerTest.anyTrue 23: [ OK ] SimdIntegerTest.anyTrue (0 ms) 23: [ RUN ] SimdIntegerTest.blend 23: [ OK ] SimdIntegerTest.blend (0 ms) 23: [ RUN ] SimdIntegerTest.cvtB2IB 23: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 23: [ RUN ] SimdIntegerTest.cvtIB2B 23: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 23: [----------] 23 tests from SimdIntegerTest (1 ms total) 23: 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (0 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (0 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 236 tests from 19 test cases ran. (86 ms total) 23: [ PASSED ] 236 tests. 23/33 Test #23: SimdUnitTests .................... Passed 0.10 sec test 24 Start 24: GmxAnaTest 24: Test command: /<>/build/basic-dp/bin/gmxana-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GmxAnaTest.xml" 24: Test timeout computed to be: 600 24: [==========] Running 18 tests from 3 test cases. 24: [----------] Global test environment set-up. 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: trr version: GMX_trn_file (single precision) 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/0 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/1 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/2 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/4 (2 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 24: Group 0 ( System) has 6 elements 24: Group 1 ( Water) has 6 elements 24: Group 2 ( SOL) has 6 elements 24: Select a group: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 24: Selected 0: 'System' 24: [ OK ] NoFatalErrorWhenWritingFrom/GmxTraj.WithDifferentInputFormats/5 (2 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/GmxTraj (15 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/0 (5 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/1 (4 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/2 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/3 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/4 (3 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 24: Will write tng: Trajectory file (tng format) 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset.WithDifferentInputFormats/5 (3 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithIndexGroupSubset (21 ms total) 24: 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/0 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.tng is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/1 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/2 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from gro file '', 6 atoms. 24: Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.gro is 0.001 (nm) 24: -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/3 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frames from pdb file Reading frame 0 time 0.000 24: Precision of /<>/src/gromacs/gmxana/tests/spc2-traj.pdb is 0.0001 (nm) 24: -> frame 0 time 0.000 't= 0.00000', 6 atoms 24: Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/4 (1 ms) 24: [ RUN ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 24: Will write trr: Trajectory in portable xdr format 24: Group 0 ( System) has 6 elements 24: Group 1 (FirstWaterMolecule) has 3 elements 24: Group 2 (SecondWaterMolecule) has 3 elements 24: Select a group: Reading frame 0 time 0.000 -> frame 0 time 0.000 Reading frame 1 time 0.000 -> frame 1 time 0.000 Last frame 1 time 0.000 24: 24: Select group for output 24: Selected 2: 'SecondWaterMolecule' 24: [ OK ] NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile.WithDifferentInputFormats/5 (1 ms) 24: [----------] 6 tests from NoFatalErrorWhenWritingFrom/TrjconvWithoutTopologyFile (7 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 18 tests from 3 test cases ran. (43 ms total) 24: [ PASSED ] 18 tests. 24/33 Test #24: GmxAnaTest ....................... Passed 0.06 sec test 25 Start 25: GmxPreprocessTests 25: Test command: /<>/build/basic-dp/bin/gmxpreprocess-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/GmxPreprocessTests.xml" 25: Test timeout computed to be: 30 25: [==========] Running 22 tests from 4 test cases. 25: [----------] Global test environment set-up. 25: [----------] 4 tests from GenconfTest 25: [ RUN ] GenconfTest.nbox_Works 25: [ OK ] GenconfTest.nbox_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_norenumber_Works 25: [ OK ] GenconfTest.nbox_norenumber_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_dist_Works 25: [ OK ] GenconfTest.nbox_dist_Works (1 ms) 25: [ RUN ] GenconfTest.nbox_rot_Works 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: center of geometry: 1.733667, 1.477000, 0.905167 25: [ OK ] GenconfTest.nbox_rot_Works (2 ms) 25: [----------] 4 tests from GenconfTest (5 ms total) 25: 25: [----------] 5 tests from InsertMoleculesTest 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: 25: Added 1 molecules (out of 1 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoExistingConfiguration_out.gro 25: 25: Output configuration contains 8 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoExistingConfiguration (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox 25: Reading molecule configuration 25: test two-residue molecule for insertion 25: Containing 2 atoms in 2 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 success (now 6 atoms)! 25: Try 4 success (now 8 atoms)! 25: Try 5 success (now 10 atoms)! 25: 25: Added 5 molecules (out of 5 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEmptyBox_out.gro 25: 25: Output configuration contains 10 atoms in 10 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEmptyBox (2 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 8 atoms)! 25: Try 2 success (now 10 atoms)! 25: 25: Added 2 molecules (out of 2 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoEnlargedBox_out.gro 25: 25: Output configuration contains 10 atoms in 4 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoEnlargedBox (3 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesWithReplacement 25: Reading solute configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: Reading molecule configuration 25: test molecule for insertion 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Try 1 success (now 650 atoms)! 25: Try 2 success (now 652 atoms)! 25: Try 3 success (now 654 atoms)! 25: Try 4 success (now 656 atoms)! 25: 25: Added 4 molecules (out of 4 requested) 25: Replaced 8 residues (24 atoms) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesWithReplacement_out.gro 25: 25: Output configuration contains 632 atoms in 212 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesWithReplacement (12 ms) 25: [ RUN ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions 25: Reading molecule configuration 25: test molecule for insertion at origin 25: Containing 2 atoms in 1 residues 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Using random seed 1997 25: Read 4 positions from file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_5.dat 25: 25: Try 1 success (now 2 atoms)! 25: Try 2 success (now 4 atoms)! 25: Try 3 Try 4 Try 5 Try 6 Try 7 Try 8 Try 9 Try 10 Try 11 Try 12 skipped position (0.990, 2.010, 3.000) 25: Try 13 success (now 6 atoms)! 25: 25: Added 3 molecules (out of 4 requested) 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/InsertMoleculesTest_InsertsMoleculesIntoFixedPositions_out.gro 25: 25: Output configuration contains 6 atoms in 3 residues 25: [ OK ] InsertMoleculesTest.InsertsMoleculesIntoFixedPositions (3 ms) 25: [----------] 5 tests from InsertMoleculesTest (23 ms total) 25: 25: [----------] 8 tests from GetIrTest 25: [ RUN ] GetIrTest.HandlesDifferentKindsOfMdpLines 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp, line 12]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_HandlesDifferentKindsOfMdpLines_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: Ignoring obsolete mdp entry 'title' 25: Replacing old mdp entry 'xtc_grps' by 'compressed-x-grps' 25: [ OK ] GetIrTest.HandlesDifferentKindsOfMdpLines (4 ms) 25: [ RUN ] GetIrTest.HandlesOnlyCutoffScheme 25: [ OK ] GetIrTest.HandlesOnlyCutoffScheme (4 ms) 25: [ RUN ] GetIrTest.UserErrorsSilentlyTolerated 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp, line 5]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_UserErrorsSilentlyTolerated_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.UserErrorsSilentlyTolerated (4 ms) 25: [ RUN ] GetIrTest.DefineHandlesAssignmentOnRhs 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_DefineHandlesAssignmentOnRhs_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.DefineHandlesAssignmentOnRhs (4 ms) 25: [ RUN ] GetIrTest.EmptyInputWorks 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp, line 1]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_EmptyInputWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.EmptyInputWorks (3 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricField 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricField_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricField (5 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldPulsed 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldPulsed_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldPulsed (4 ms) 25: [ RUN ] GetIrTest.ProducesOutputFromElectricFieldOscillating 25: 25: NOTE 1 [file /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp, line 2]: 25: /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/GetIrTest_ProducesOutputFromElectricFieldOscillating_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 25: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 25: scheme was introduced, but the group scheme was still the default. The 25: default is now the Verlet scheme, so you will observe different behaviour. 25: 25: [ OK ] GetIrTest.ProducesOutputFromElectricFieldOscillating (4 ms) 25: [----------] 8 tests from GetIrTest (33 ms total) 25: 25: [----------] 5 tests from SolvateTest 25: [ RUN ] SolvateTest.cs_box_Works 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 1x1x1 boxes 25: Solvent box contains 270 atoms in 90 residues 25: Removed 129 solvent atoms due to solvent-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 47 residues 25: Generated solvent containing 141 atoms in 47 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_box_Works_out.gro 25: 25: Output configuration contains 141 atoms in 47 residues 25: Volume : 1.331 (nm^3) 25: Density : 1056.36 (g/l) 25: Number of solvent molecules: 47 25: 25: [ OK ] SolvateTest.cs_box_Works (12 ms) 25: [ RUN ] SolvateTest.cs_cp_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.776 (g/l) 25: Number of solvent molecules: 886 25: 25: [ OK ] SolvateTest.cs_cp_Works (53 ms) 25: [ RUN ] SolvateTest.cs_cp_p_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 886 residues 25: Generated solvent containing 2658 atoms in 886 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works_out.gro 25: 25: Output configuration contains 2664 atoms in 888 residues 25: Volume : 27.2709 (nm^3) 25: Density : 974.776 (g/l) 25: Number of solvent molecules: 886 25: 25: Processing topology 25: Adding line for 886 solvent molecules with resname (SOL) to topology file (/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_cs_cp_p_Works.top) 25: [ OK ] SolvateTest.cs_cp_p_Works (54 ms) 25: [ RUN ] SolvateTest.shell_Works 25: Reading solute configuration 25: Test system for solvate/insert-molecules 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 2x2x2 boxes 25: Solvent box contains 3660 atoms in 1220 residues 25: Removed 987 solvent atoms due to solvent-solvent overlap 25: Removed 1902 solvent atoms more than 1.000000 nm from solute. 25: Removed 15 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 1 molecule type: 25: SOL ( 3 atoms): 252 residues 25: Generated solvent containing 756 atoms in 252 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_shell_Works_out.gro 25: 25: Output configuration contains 762 atoms in 254 residues 25: Volume : 27.2709 (nm^3) 25: Density : 279.3 (g/l) 25: Number of solvent molecules: 252 25: 25: [ OK ] SolvateTest.shell_Works (28 ms) 25: [ RUN ] SolvateTest.update_Topology_Works 25: Reading solute configuration 25: Test system for solvate 25: Containing 6 atoms in 2 residues 25: Reading solvent configuration 25: 216H2O,WATJP01,SPC216,SPC-MODEL,300K,BOX(M)=1.86206NM,WFVG,MAR. 1984 25: Containing 648 atoms in 216 residues 25: 25: Initialising inter-atomic distances... 25: 25: WARNING: Masses and atomic (Van der Waals) radii will be guessed 25: based on residue and atom names, since they could not be 25: definitively assigned from the information in your input 25: files. These guessed numbers might deviate from the mass 25: and radius of the atom type. Please check the output 25: files if necessary. 25: 25: NOTE: From version 5.0 gmxpreprocess-test uses the Van der Waals radii 25: from the source below. This means the results may be different 25: compared to previous GROMACS versions. 25: 25: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 25: A. Bondi 25: van der Waals Volumes and Radii 25: J. Phys. Chem. 68 (1964) pp. 441-451 25: -------- -------- --- Thank You --- -------- -------- 25: 25: Generating solvent configuration 25: Will generate new solvent configuration of 3x3x3 boxes 25: Solvent box contains 14952 atoms in 4984 residues 25: Removed 2787 solvent atoms due to solvent-solvent overlap 25: Removed 30 solvent atoms due to solute-solvent overlap 25: Sorting configuration 25: Found 2 different molecule types: 25: HOH ( 3 atoms): 1876 residues 25: SOL ( 3 atoms): 2169 residues 25: Generated solvent containing 12135 atoms in 4045 residues 25: Writing generated configuration to /<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_out.gro 25: 25: Output configuration contains 12141 atoms in 4047 residues 25: Volume : 125 (nm^3) 25: Density : 968.963 (g/l) 25: Number of solvent molecules: 4045 25: 25: Processing topology 25: Adding line for 1876 solvent molecules with resname (HOH) to topology file (/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 25: Adding line for 2169 solvent molecules with resname (SOL) to topology file (/<>/build/basic-dp/src/gromacs/gmxpreprocess/tests/Testing/Temporary/SolvateTest_update_Topology_Works_simple.top) 25: [ OK ] SolvateTest.update_Topology_Works (207 ms) 25: [----------] 5 tests from SolvateTest (355 ms total) 25: 25: [----------] Global test environment tear-down 25: [==========] 22 tests from 4 test cases ran. (416 ms total) 25: [ PASSED ] 22 tests. 25/33 Test #25: GmxPreprocessTests ............... Passed 0.43 sec test 26 Start 26: CorrelationsTest 26: Test command: /<>/build/basic-dp/bin/correlations-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CorrelationsTest.xml" 26: Test timeout computed to be: 30 26: [==========] Running 21 tests from 3 test cases. 26: [----------] Global test environment set-up. 26: [----------] 10 tests from AutocorrTest 26: [ RUN ] AutocorrTest.EacNormal 26: [ OK ] AutocorrTest.EacNormal (5 ms) 26: [ RUN ] AutocorrTest.EacNoNormalize 26: [ OK ] AutocorrTest.EacNoNormalize (2 ms) 26: [ RUN ] AutocorrTest.EacCos 26: [ OK ] AutocorrTest.EacCos (3 ms) 26: [ RUN ] AutocorrTest.EacVector 26: [ OK ] AutocorrTest.EacVector (5 ms) 26: [ RUN ] AutocorrTest.EacRcross 26: [ OK ] AutocorrTest.EacRcross (2 ms) 26: [ RUN ] AutocorrTest.EacP0 26: [ OK ] AutocorrTest.EacP0 (5 ms) 26: [ RUN ] AutocorrTest.EacP1 26: [ OK ] AutocorrTest.EacP1 (5 ms) 26: [ RUN ] AutocorrTest.EacP2 26: [ OK ] AutocorrTest.EacP2 (10 ms) 26: [ RUN ] AutocorrTest.EacP3 26: [ OK ] AutocorrTest.EacP3 (7 ms) 26: [ RUN ] AutocorrTest.EacP4 26: [ OK ] AutocorrTest.EacP4 (6 ms) 26: [----------] 10 tests from AutocorrTest (53 ms total) 26: 26: [----------] 1 test from ManyAutocorrelationTest 26: [ RUN ] ManyAutocorrelationTest.Empty 26: [ OK ] ManyAutocorrelationTest.Empty (0 ms) 26: [----------] 1 test from ManyAutocorrelationTest (0 ms total) 26: 26: [----------] 10 tests from ExpfitTest 26: [ RUN ] ExpfitTest.EffnEXP1 26: [ OK ] ExpfitTest.EffnEXP1 (1 ms) 26: [ RUN ] ExpfitTest.EffnEXP2 26: [ OK ] ExpfitTest.EffnEXP2 (2 ms) 26: [ RUN ] ExpfitTest.EffnEXPEXP 26: [ OK ] ExpfitTest.EffnEXPEXP (4 ms) 26: [ RUN ] ExpfitTest.EffnEXP5 26: [ OK ] ExpfitTest.EffnEXP5 (13 ms) 26: [ RUN ] ExpfitTest.EffnEXP7 26: [ OK ] ExpfitTest.EffnEXP7 (12 ms) 26: [ RUN ] ExpfitTest.EffnEXP9 26: [ OK ] ExpfitTest.EffnEXP9 (59 ms) 26: [ RUN ] ExpfitTest.EffnERF 26: [ OK ] ExpfitTest.EffnERF (6 ms) 26: [ RUN ] ExpfitTest.EffnERREST 26: [ OK ] ExpfitTest.EffnERREST (1 ms) 26: [ RUN ] ExpfitTest.EffnVAC 26: [ OK ] ExpfitTest.EffnVAC (23 ms) 26: [ RUN ] ExpfitTest.EffnPRES 26: [ OK ] ExpfitTest.EffnPRES (40 ms) 26: [----------] 10 tests from ExpfitTest (163 ms total) 26: 26: [----------] Global test environment tear-down 26: [==========] 21 tests from 3 test cases ran. (223 ms total) 26: [ PASSED ] 21 tests. 26/33 Test #26: CorrelationsTest ................. Passed 0.24 sec test 27 Start 27: AnalysisDataUnitTests 27: Test command: /<>/build/basic-dp/bin/analysisdata-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/AnalysisDataUnitTests.xml" 27: Test timeout computed to be: 30 27: [==========] Running 69 tests from 14 test cases. 27: [----------] Global test environment set-up. 27: [----------] 3 tests from AnalysisDataInitializationTest 27: [ RUN ] AnalysisDataInitializationTest.BasicInitialization 27: [ OK ] AnalysisDataInitializationTest.BasicInitialization (0 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultiColumnModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultiColumnModules (0 ms) 27: [ RUN ] AnalysisDataInitializationTest.ChecksMultipointModules 27: [ OK ] AnalysisDataInitializationTest.ChecksMultipointModules (0 ms) 27: [----------] 3 tests from AnalysisDataInitializationTest (0 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/0, where TypeParam = (anonymous namespace)::SimpleInputData 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/0.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/0.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/0.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/0.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/0.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/0 (7 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/1, where TypeParam = (anonymous namespace)::DataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/1.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/1.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/1.CanAddModuleAfterStoredData (0 ms) 27: [ RUN ] AnalysisDataCommonTest/1.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/1.LimitedStorageWorks (1 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/1 (7 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/2, where TypeParam = (anonymous namespace)::MultipointInputData 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/2.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/2.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/2.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/2.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/2.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/2 (7 ms total) 27: 27: [----------] 8 tests from AnalysisDataCommonTest/3, where TypeParam = (anonymous namespace)::MultipointDataSetsInputData 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectly (2 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsParallelModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsMixedModulesCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly 27: [ OK ] AnalysisDataCommonTest/3.CallsColumnModuleCorrectly (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames 27: [ OK ] AnalysisDataCommonTest/3.CallsModuleCorrectlyWithOutOfOrderFrames (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.FullStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.FullStorageWorks (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData 27: [ OK ] AnalysisDataCommonTest/3.CanAddModuleAfterStoredData (1 ms) 27: [ RUN ] AnalysisDataCommonTest/3.LimitedStorageWorks 27: [ OK ] AnalysisDataCommonTest/3.LimitedStorageWorks (0 ms) 27: [----------] 8 tests from AnalysisDataCommonTest/3 (8 ms total) 27: 27: [----------] 4 tests from AnalysisArrayDataTest 27: [ RUN ] AnalysisArrayDataTest.CallsModuleCorrectly 27: [ OK ] AnalysisArrayDataTest.CallsModuleCorrectly (1 ms) 27: [ RUN ] AnalysisArrayDataTest.StorageWorks 27: [ OK ] AnalysisArrayDataTest.StorageWorks (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxis 27: [ OK ] AnalysisArrayDataTest.CanSetXAxis (0 ms) 27: [ RUN ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount 27: [ OK ] AnalysisArrayDataTest.CanSetXAxisBeforeRowCount (0 ms) 27: [----------] 4 tests from AnalysisArrayDataTest (2 ms total) 27: 27: [----------] 6 tests from AverageModuleTest 27: [ RUN ] AverageModuleTest.BasicTest 27: [ OK ] AverageModuleTest.BasicTest (2 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipointData 27: [ OK ] AverageModuleTest.HandlesMultipointData (1 ms) 27: [ RUN ] AverageModuleTest.HandlesMultipleDataSets 27: [ OK ] AverageModuleTest.HandlesMultipleDataSets (1 ms) 27: [ RUN ] AverageModuleTest.HandlesDataSetAveraging 27: [ OK ] AverageModuleTest.HandlesDataSetAveraging (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeXAxis 27: [ OK ] AverageModuleTest.CanCustomizeXAxis (1 ms) 27: [ RUN ] AverageModuleTest.CanCustomizeNonUniformXAxis 27: [ OK ] AverageModuleTest.CanCustomizeNonUniformXAxis (1 ms) 27: [----------] 6 tests from AverageModuleTest (9 ms total) 27: 27: [----------] 2 tests from FrameAverageModuleTest 27: [ RUN ] FrameAverageModuleTest.BasicTest 27: [ OK ] FrameAverageModuleTest.BasicTest (1 ms) 27: [ RUN ] FrameAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] FrameAverageModuleTest.HandlesMultipleDataSets (1 ms) 27: [----------] 2 tests from FrameAverageModuleTest (2 ms total) 27: 27: [----------] 7 tests from AnalysisHistogramSettingsTest 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromBinsWithIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCount (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidth (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinCountAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithBinWidthAndIntegerBins (0 ms) 27: [ RUN ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange 27: [ OK ] AnalysisHistogramSettingsTest.InitializesFromRangeWithRoundedRange (0 ms) 27: [----------] 7 tests from AnalysisHistogramSettingsTest (1 ms total) 27: 27: [----------] 2 tests from SimpleHistogramModuleTest 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectly 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectly (2 ms) 27: [ RUN ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] SimpleHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [----------] 2 tests from SimpleHistogramModuleTest (4 ms total) 27: 27: [----------] 3 tests from WeightedHistogramModuleTest 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectly 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectly (1 ms) 27: [ RUN ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll 27: [ OK ] WeightedHistogramModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [ RUN ] WeightedHistogramModuleTest.HandlesMultipleDataSets 27: [ OK ] WeightedHistogramModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from WeightedHistogramModuleTest (6 ms total) 27: 27: [----------] 3 tests from BinAverageModuleTest 27: [ RUN ] BinAverageModuleTest.ComputesCorrectly 27: [ OK ] BinAverageModuleTest.ComputesCorrectly (1 ms) 27: [ RUN ] BinAverageModuleTest.ComputesCorrectlyWithAll 27: [ OK ] BinAverageModuleTest.ComputesCorrectlyWithAll (1 ms) 27: [ RUN ] BinAverageModuleTest.HandlesMultipleDataSets 27: [ OK ] BinAverageModuleTest.HandlesMultipleDataSets (2 ms) 27: [----------] 3 tests from BinAverageModuleTest (4 ms total) 27: 27: [----------] 4 tests from AbstractAverageHistogramTest 27: [ RUN ] AbstractAverageHistogramTest.ClonesCorrectly 27: [ OK ] AbstractAverageHistogramTest.ClonesCorrectly (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ComputesCumulativeHistogram 27: [ OK ] AbstractAverageHistogramTest.ComputesCumulativeHistogram (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidth (2 ms) 27: [ RUN ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins 27: [ OK ] AbstractAverageHistogramTest.ResamplesAtDoubleBinWidthWithIntegerBins (1 ms) 27: [----------] 4 tests from AbstractAverageHistogramTest (7 ms total) 27: 27: [----------] 3 tests from LifetimeModuleTest 27: [ RUN ] LifetimeModuleTest.BasicTest 27: [ OK ] LifetimeModuleTest.BasicTest (1 ms) 27: [ RUN ] LifetimeModuleTest.CumulativeTest 27: [ OK ] LifetimeModuleTest.CumulativeTest (0 ms) 27: [ RUN ] LifetimeModuleTest.HandlesMultipleDataSets 27: [ OK ] LifetimeModuleTest.HandlesMultipleDataSets (1 ms) 27: [----------] 3 tests from LifetimeModuleTest (4 ms total) 27: 27: [----------] Global test environment tear-down 27: [==========] 69 tests from 14 test cases ran. (68 ms total) 27: [ PASSED ] 69 tests. 27/33 Test #27: AnalysisDataUnitTests ............ Passed 0.08 sec test 28 Start 28: SelectionUnitTests 28: Test command: /<>/build/basic-dp/bin/selection-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/SelectionUnitTests.xml" 28: Test timeout computed to be: 30 28: [==========] Running 190 tests from 10 test cases. 28: [----------] Global test environment set-up. 28: [----------] 1 test from IndexGroupTest 28: [ RUN ] IndexGroupTest.RemovesDuplicates 28: [ OK ] IndexGroupTest.RemovesDuplicates (0 ms) 28: [----------] 1 test from IndexGroupTest (0 ms total) 28: 28: [----------] 15 tests from IndexBlockTest 28: [ RUN ] IndexBlockTest.CreatesUnknownBlock 28: [ OK ] IndexBlockTest.CreatesUnknownBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesAtomBlock 28: [ OK ] IndexBlockTest.CreatesAtomBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlock 28: [ OK ] IndexBlockTest.CreatesResidueBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlock 28: [ OK ] IndexBlockTest.CreatesMoleculeBlock (0 ms) 28: [ RUN ] IndexBlockTest.CreatesResidueBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesResidueBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesMoleculeBlockWithCompletion 28: [ OK ] IndexBlockTest.CreatesMoleculeBlockWithCompletion (0 ms) 28: [ RUN ] IndexBlockTest.CreatesSingleBlock 28: [ OK ] IndexBlockTest.CreatesSingleBlock (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksPositive (1 ms) 28: [ RUN ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive 28: [ OK ] IndexBlockTest.ChecksOutOfOrderGroupForFullBlocksPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForFullBlocksNegative 28: [ OK ] IndexBlockTest.ChecksGroupForFullBlocksNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteElementsTrivial (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteResiduesNegative (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesPositive (0 ms) 28: [ RUN ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative 28: [ OK ] IndexBlockTest.ChecksGroupForCompleteMoleculesNegative (0 ms) 28: [----------] 15 tests from IndexBlockTest (2 ms total) 28: 28: [----------] 11 tests from IndexMapTest 28: [ RUN ] IndexMapTest.InitializesAtomBlock 28: [ OK ] IndexMapTest.InitializesAtomBlock (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAtom 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAtom (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupSingle 28: [ OK ] IndexMapTest.InitializesOrgIdGroupSingle (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupResidue 28: [ OK ] IndexMapTest.InitializesOrgIdGroupResidue (1 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupMolecule 28: [ OK ] IndexMapTest.InitializesOrgIdGroupMolecule (0 ms) 28: [ RUN ] IndexMapTest.InitializesOrgIdGroupAll 28: [ OK ] IndexMapTest.InitializesOrgIdGroupAll (0 ms) 28: [ RUN ] IndexMapTest.InitializesMoleculeBlock 28: [ OK ] IndexMapTest.InitializesMoleculeBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsSingleBlock 28: [ OK ] IndexMapTest.MapsSingleBlock (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocks 28: [ OK ] IndexMapTest.MapsResidueBlocks (0 ms) 28: [ RUN ] IndexMapTest.MapsResidueBlocksWithMask 28: [ OK ] IndexMapTest.MapsResidueBlocksWithMask (0 ms) 28: [ RUN ] IndexMapTest.HandlesMultipleRequests 28: [ OK ] IndexMapTest.HandlesMultipleRequests (1 ms) 28: [----------] 11 tests from IndexMapTest (3 ms total) 28: 28: [----------] 15 tests from NeighborhoodSearchTest 28: [ RUN ] NeighborhoodSearchTest.SimpleSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSearch (22 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchXY 28: [ OK ] NeighborhoodSearchTest.SimpleSearchXY (24 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchBox 28: [ OK ] NeighborhoodSearchTest.GridSearchBox (3 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchTriclinic 28: [ OK ] NeighborhoodSearchTest.GridSearchTriclinic (13 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearch2DPBC 28: [ OK ] NeighborhoodSearchTest.GridSearch2DPBC (8 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchNoPBC 28: [ OK ] NeighborhoodSearchTest.GridSearchNoPBC (3 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchXYBox 28: [ OK ] NeighborhoodSearchTest.GridSearchXYBox (4 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.SimpleSelfPairsSearch (0 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSelfPairsSearch 28: [ OK ] NeighborhoodSearchTest.GridSelfPairsSearch (70 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesConcurrentSearches 28: [ OK ] NeighborhoodSearchTest.HandlesConcurrentSearches (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNoPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNoPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesNullPBC 28: [ OK ] NeighborhoodSearchTest.HandlesNullPBC (0 ms) 28: [ RUN ] NeighborhoodSearchTest.HandlesSkippingPairs 28: [ OK ] NeighborhoodSearchTest.HandlesSkippingPairs (0 ms) 28: [ RUN ] NeighborhoodSearchTest.SimpleSearchExclusions 28: [ OK ] NeighborhoodSearchTest.SimpleSearchExclusions (6 ms) 28: [ RUN ] NeighborhoodSearchTest.GridSearchExclusions 28: [ OK ] NeighborhoodSearchTest.GridSearchExclusions (1 ms) 28: [----------] 15 tests from NeighborhoodSearchTest (155 ms total) 28: 28: [----------] 12 tests from PositionCalculationTest 28: [ RUN ] PositionCalculationTest.ComputesAtomPositions 28: [ OK ] PositionCalculationTest.ComputesAtomPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOGPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOGPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesResidueCOMPositions 28: [ OK ] PositionCalculationTest.ComputesResidueCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOGPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOGPositions (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesGroupCOMPositions 28: [ OK ] PositionCalculationTest.ComputesGroupCOMPositions (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteWhole 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteWhole (0 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionsWithCompleteMax 28: [ OK ] PositionCalculationTest.ComputesPositionsWithCompleteMax (1 ms) 28: [ RUN ] PositionCalculationTest.ComputesPositionMask 28: [ OK ] PositionCalculationTest.ComputesPositionMask (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms (1 ms) 28: [ RUN ] PositionCalculationTest.HandlesFramesWithLessAtoms2 28: [ OK ] PositionCalculationTest.HandlesFramesWithLessAtoms2 (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesIdenticalStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesIdenticalStaticCalculations (0 ms) 28: [ RUN ] PositionCalculationTest.HandlesOverlappingStaticCalculations 28: [ OK ] PositionCalculationTest.HandlesOverlappingStaticCalculations (0 ms) 28: [----------] 12 tests from PositionCalculationTest (5 ms total) 28: 28: [----------] 30 tests from SelectionCollectionTest 28: [ RUN ] SelectionCollectionTest.HandlesNoSelections 28: [ OK ] SelectionCollectionTest.HandlesNoSelections (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType 28: [ OK ] SelectionCollectionTest.HandlesNoSelectionsWithDefaultPositionType (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesVelocityAndForceRequests 28: [ OK ] SelectionCollectionTest.HandlesVelocityAndForceRequests (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry 28: [ OK ] SelectionCollectionTest.HandlesForceRequestForCenterOfGeometry (0 ms) 28: [ RUN ] SelectionCollectionTest.ParsesSelectionsFromFile 28: [ OK ] SelectionCollectionTest.ParsesSelectionsFromFile (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesAtypicalWhitespace 28: [ OK ] SelectionCollectionTest.HandlesAtypicalWhitespace (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesInvalidRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesInvalidRegularExpressions (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions 28: [ OK ] SelectionCollectionTest.HandlesUnsupportedRegularExpressions (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue2 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesMissingMethodParamValue3 28: [ OK ] SelectionCollectionTest.HandlesMissingMethodParamValue3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceParser2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed1 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 28: [ OK ] SelectionCollectionTest.HandlesUnknownGroupReferenceDelayed2 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReference 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReference (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed 28: [ OK ] SelectionCollectionTest.HandlesUnsortedGroupReferenceDelayed (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroup (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 28: [ OK ] SelectionCollectionTest.HandlesOutOfRangeAtomIndexInGroupDelayed2 (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingMoleculeInfo (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingAtomTypes 28: [ OK ] SelectionCollectionTest.RecoversFromMissingAtomTypes (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromMissingPDBInfo 28: [ OK ] SelectionCollectionTest.RecoversFromMissingPDBInfo (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation (1 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation2 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation2 (0 ms) 28: [ RUN ] SelectionCollectionTest.RecoversFromInvalidPermutation3 28: [ OK ] SelectionCollectionTest.RecoversFromInvalidPermutation3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets2 (0 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets3 (1 ms) 28: [ RUN ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 28: [ OK ] SelectionCollectionTest.HandlesFramesWithTooSmallAtomSubsets4 (0 ms) 28: [----------] 30 tests from SelectionCollectionTest (16 ms total) 28: 28: [----------] 14 tests from SelectionCollectionInteractiveTest 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesBasicInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesBasicInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesContinuation 28: [ OK ] SelectionCollectionInteractiveTest.HandlesContinuation (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInput (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithGroups (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesStatusWithExistingSelections (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputStatus (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesTwoSelectionInputStatus (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultiSelectionInputStatus (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoFinalNewline (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesEmptySelections 28: [ OK ] SelectionCollectionInteractiveTest.HandlesEmptySelections (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine 28: [ OK ] SelectionCollectionInteractiveTest.HandlesMultipleSelectionsOnLine (1 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput 28: [ OK ] SelectionCollectionInteractiveTest.HandlesNoninteractiveInput (0 ms) 28: [ RUN ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively 28: [ OK ] SelectionCollectionInteractiveTest.HandlesSingleSelectionInputNoninteractively (0 ms) 28: [----------] 14 tests from SelectionCollectionInteractiveTest (10 ms total) 28: 28: [----------] 66 tests from SelectionCollectionDataTest 28: [ RUN ] SelectionCollectionDataTest.HandlesAllNone 28: [ OK ] SelectionCollectionDataTest.HandlesAllNone (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomnr 28: [ OK ] SelectionCollectionDataTest.HandlesAtomnr (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResnr 28: [ OK ] SelectionCollectionDataTest.HandlesResnr (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResIndex 28: [ OK ] SelectionCollectionDataTest.HandlesResIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMolIndex 28: [ OK ] SelectionCollectionDataTest.HandlesMolIndex (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPdbAtomname 28: [ OK ] SelectionCollectionDataTest.HandlesPdbAtomname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAtomtype 28: [ OK ] SelectionCollectionDataTest.HandlesAtomtype (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesChain 28: [ OK ] SelectionCollectionDataTest.HandlesChain (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMass 28: [ OK ] SelectionCollectionDataTest.HandlesMass (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCharge 28: [ OK ] SelectionCollectionDataTest.HandlesCharge (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesAltLoc 28: [ OK ] SelectionCollectionDataTest.HandlesAltLoc (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInsertCode 28: [ OK ] SelectionCollectionDataTest.HandlesInsertCode (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOccupancy 28: [ OK ] SelectionCollectionDataTest.HandlesOccupancy (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBeta 28: [ OK ] SelectionCollectionDataTest.HandlesBeta (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesResname 28: [ OK ] SelectionCollectionDataTest.HandlesResname (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesCoordinateKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesCoordinateKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidue 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidue (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSameResidueName 28: [ OK ] SelectionCollectionDataTest.HandlesSameResidueName (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionKeywords (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMinDistanceKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesMinDistanceKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesWithinKeyword (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword 28: [ OK ] SelectionCollectionDataTest.HandlesInSolidAngleKeyword (5 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPermuteModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPermuteModifier (3 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPlusModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPlusModifier (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesMergeModifier 28: [ OK ] SelectionCollectionDataTest.HandlesMergeModifier (2 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndCharges 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndCharges (2 ms) 28: [ RUN ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology 28: [ OK ] SelectionCollectionDataTest.ComputesMassesAndChargesWithoutTopology (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets 28: [ OK ] SelectionCollectionDataTest.HandlesFramesWithAtomSubsets (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesSelectionNames 28: [ OK ] SelectionCollectionDataTest.HandlesSelectionNames (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelections (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesIndexGroupsInSelectionsDelayed (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelections (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed 28: [ OK ] SelectionCollectionDataTest.HandlesUnsortedIndexGroupsInSelectionsDelayed (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionsWithModifiers (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWithinConstantPositions 28: [ OK ] SelectionCollectionDataTest.HandlesWithinConstantPositions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingIntegerRanges (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesOverlappingRealRanges 28: [ OK ] SelectionCollectionDataTest.HandlesOverlappingRealRanges (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode 28: [ OK ] SelectionCollectionDataTest.HandlesForcedStringMatchingMode (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesWildcardMatching 28: [ OK ] SelectionCollectionDataTest.HandlesWildcardMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesRegexMatching 28: [ OK ] SelectionCollectionDataTest.HandlesRegexMatching (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBasicBoolean 28: [ OK ] SelectionCollectionDataTest.HandlesBasicBoolean (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters 28: [ OK ] SelectionCollectionDataTest.HandlesDynamicAtomValuedParameters (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesEmptySelectionWithUnevaluatedExpressions (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame 28: [ OK ] SelectionCollectionDataTest.HandlesEmptyReferenceForSame (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForKeywords (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods 28: [ OK ] SelectionCollectionDataTest.HandlesPositionModifiersForMethods (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositions 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositions (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic 28: [ OK ] SelectionCollectionDataTest.HandlesKeywordOfPositionsInArithmetic (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericComparisons 28: [ OK ] SelectionCollectionDataTest.HandlesNumericComparisons (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesArithmeticExpressions 28: [ OK ] SelectionCollectionDataTest.HandlesArithmeticExpressions (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesComplexNumericVariables 28: [ OK ] SelectionCollectionDataTest.HandlesComplexNumericVariables (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariables 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesPositionVariableInModifier 28: [ OK ] SelectionCollectionDataTest.HandlesPositionVariableInModifier (2 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesConstantPositionInVariable 28: [ OK ] SelectionCollectionDataTest.HandlesConstantPositionInVariable (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables 28: [ OK ] SelectionCollectionDataTest.HandlesNumericConstantsInVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysis (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithVariables (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables 28: [ OK ] SelectionCollectionDataTest.HandlesBooleanStaticAnalysisWithMoreVariables (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesUnusedVariables 28: [ OK ] SelectionCollectionDataTest.HandlesUnusedVariables (0 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithStaticEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups (1 ms) 28: [ RUN ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 28: [ OK ] SelectionCollectionDataTest.HandlesVariablesWithMixedEvaluationGroups2 (1 ms) 28: [----------] 66 tests from SelectionCollectionDataTest (79 ms total) 28: 28: [----------] 17 tests from SelectionOptionTest 28: [ RUN ] SelectionOptionTest.ParsesSimpleSelection 28: [ OK ] SelectionOptionTest.ParsesSimpleSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired 28: [ OK ] SelectionOptionTest.HandlesDynamicSelectionWhenStaticRequired (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired 28: [ OK ] SelectionOptionTest.HandlesNonAtomicSelectionWhenAtomsRequired (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired 28: [ OK ] SelectionOptionTest.ChecksForSortedAtomsWhenRequired (1 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptySelections 28: [ OK ] SelectionOptionTest.ChecksEmptySelections (0 ms) 28: [ RUN ] SelectionOptionTest.ChecksEmptyDelayedSelections 28: [ OK ] SelectionOptionTest.ChecksEmptyDelayedSelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelections 28: [ OK ] SelectionOptionTest.HandlesTooManySelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewSelections (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDefaultSelectionText 28: [ OK ] SelectionOptionTest.HandlesDefaultSelectionText (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesAdjuster 28: [ OK ] SelectionOptionTest.HandlesAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDynamicWhenStaticRequiredWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooManySelectionsWithAdjuster (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesTooFewSelectionsWithAdjuster (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedRequiredSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedRequiredSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections 28: [ OK ] SelectionOptionTest.HandlesTooFewDelayedRequiredSelections (1 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedOptionalSelection 28: [ OK ] SelectionOptionTest.HandlesDelayedOptionalSelection (0 ms) 28: [ RUN ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster 28: [ OK ] SelectionOptionTest.HandlesDelayedSelectionWithAdjuster (0 ms) 28: [----------] 17 tests from SelectionOptionTest (6 ms total) 28: 28: [----------] 9 tests from SelectionFileOptionTest 28: [ RUN ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesSingleSelectionOptionFromFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions 28: [ OK ] SelectionFileOptionTest.HandlesTwoSeparateSelectionOptions (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoSelectionOptionsFromSingleFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFile 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet 28: [ OK ] SelectionFileOptionTest.HandlesRequiredOptionFromFileWithOtherOptionSet (0 ms) 28: [ RUN ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile 28: [ OK ] SelectionFileOptionTest.HandlesTwoRequiredOptionsFromSingleFile (1 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNoFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNoFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithNonExistentFile 28: [ OK ] SelectionFileOptionTest.GivesErrorWithNonExistentFile (0 ms) 28: [ RUN ] SelectionFileOptionTest.GivesErrorWithMultipleFiles 28: [ OK ] SelectionFileOptionTest.GivesErrorWithMultipleFiles (1 ms) 28: [----------] 9 tests from SelectionFileOptionTest (4 ms total) 28: 28: [----------] Global test environment tear-down 28: [==========] 190 tests from 10 test cases ran. (280 ms total) 28: [ PASSED ] 190 tests. 28/33 Test #28: SelectionUnitTests ............... Passed 0.30 sec test 29 Start 29: TrajectoryAnalysisUnitTests 29: Test command: /<>/build/basic-dp/bin/trajectoryanalysis-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/TrajectoryAnalysisUnitTests.xml" 29: Test timeout computed to be: 30 29: [==========] Running 68 tests from 13 test cases. 29: [----------] Global test environment set-up. 29: [----------] 5 tests from ClustsizeTest 29: [ RUN ] ClustsizeTest.NoMolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 2, cmax: 4, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.NoMolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Group 0 ( SOL) has 24 elements 29: There is one group in the index 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 24 29: cmid: 1, cmax: 6, max_size: 6 29: 16% 33% 50% 66% 83%100%cmid: 6, cmax: 18, max_size: 6 29: 16% 33% 50% 66% 83%100%[ OK ] ClustsizeTest.NoMolShortCutoff (3 ms) 29: [ RUN ] ClustsizeTest.MolDefaultCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolDefaultCutoff (4 ms) 29: [ RUN ] ClustsizeTest.MolShortCutoff 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 1, cmax: 6, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolShortCutoff (3 ms) 29: [ RUN ] ClustsizeTest.MolCSize 29: Reading frames from pdb file Reading frame 0 time 0.000 Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/clustsize.tpr, VERSION 2016 (single precision) 29: '', 24 atoms 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Total number of atoms in clusters = 8 29: cmid: 2, cmax: 4, max_size: 2 29: 50%100%cmid: 2, cmax: 6, max_size: 2 29: 50%100%[ OK ] ClustsizeTest.MolCSize (4 ms) 29: [----------] 5 tests from ClustsizeTest (18 ms total) 29: 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.WritesHelp (1 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.RunsWithSubsetTrajectory (4 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset 29: Reading frames from gro file 'Test system', 8 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.DetectsIncorrectTrajectorySubset (4 ms) 29: [ RUN ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory 29: [ OK ] TrajectoryAnalysisCommandLineRunnerTest.FailsWithTrajectorySubsetWithoutTrajectory (1 ms) 29: [----------] 4 tests from TrajectoryAnalysisCommandLineRunnerTest (10 ms total) 29: 29: [----------] 11 tests from AngleModuleTest 29: [ RUN ] AngleModuleTest.ComputesSimpleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesSimpleAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesDihedrals 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesDihedrals (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPairAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorPlanePairAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorPlanePairAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesPlaneZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesPlaneZAxisAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorSphereNormalZAxisAngles (4 ms) 29: [ RUN ] AngleModuleTest.ComputesVectorTimeZeroAngles 29: Reading frames from gro file 'Test system for different angles', 33 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesVectorTimeZeroAngles (5 ms) 29: [ RUN ] AngleModuleTest.ComputesMultipleAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.ComputesMultipleAngles (4 ms) 29: [ RUN ] AngleModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesDynamicSelections (5 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorAngles (4 ms) 29: [ RUN ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] AngleModuleTest.HandlesOneVsMultipleVectorGroupsAngles (4 ms) 29: [----------] 11 tests from AngleModuleTest (48 ms total) 29: 29: [----------] 3 tests from DistanceModuleTest 29: [ RUN ] DistanceModuleTest.ComputesDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: [ OK ] DistanceModuleTest.ComputesDistances (6 ms) 29: [ RUN ] DistanceModuleTest.ComputesMultipleDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2: 29: Number of samples: 5 29: Average distance: 1.43246 nm 29: Standard deviation: 0.96700 nm 29: resindex 1 to 4 and atomname CB merge resindex 2 to 5 and atomname CB: 29: Number of samples: 4 29: Average distance: 1.81066 nm 29: Standard deviation: 0.79289 nm 29: [ OK ] DistanceModuleTest.ComputesMultipleDistances (6 ms) 29: [ RUN ] DistanceModuleTest.HandlesDynamicSelections 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: atomname S1 S2 and res_cog x < 2.8: 29: Number of samples: 3 29: Average distance: 1.72076 nm 29: Standard deviation: 1.24839 nm 29: [ OK ] DistanceModuleTest.HandlesDynamicSelections (5 ms) 29: [----------] 3 tests from DistanceModuleTest (17 ms total) 29: 29: [----------] 2 tests from FreeVolumeModuleTest 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolume 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for CO2-RM. Set to zero. 29: Could not determine VDW radius for 40 particles. These were set to zero. 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 13 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.02 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1256 +/- 0.0000 nm^3 29: Fractional free volume 0.194 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolume (168 ms) 29: [ RUN ] FreeVolumeModuleTest.ComputesFreeVolumeSelection 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: Reading file /<>/src/gromacs/trajectoryanalysis/tests/freevolume.tpr, VERSION 4.5.5 (single precision) 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Reading frame 0 time 0.000 Last frame 0 time 0.000 29: Analyzed 1 frames, last time 0.000 29: cutoff = 0.18 nm 29: probe_radius = 0 nm 29: seed = 17 29: ninsert = 1000 probes per nm^3 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Tuanan C. Lourenco and Mariny F. C. Coelho and Teodorico C. Ramalho and David 29: van der Spoel and Luciano T. Costa 29: Insights on the Solubility of CO2 in 1-Ethyl-3-methylimidazolium 29: Bis(trifluoromethylsulfonyl)imide from the Microscopic Point of View 29: Environ. Sci. Technol. 47 (2013) pp. 7421-7429 29: -------- -------- --- Thank You --- -------- -------- 29: 29: Free volume 38.48 +/- 0.00 % 29: Total volume 68.92 +/- 0.00 nm^3 29: Number of molecules 340 total mass 63491.38 Dalton 29: Average molar mass: 186.74 Dalton 29: Density rho: 1529.71 +/- 0.00 nm^3 29: Molecular volume Vm assuming homogeneity: 0.2027 +/- 0.0000 nm^3 29: Molecular van der Waals volume assuming homogeneity: 0.1247 +/- 0.0000 nm^3 29: Fractional free volume 0.200 +/- 0.000 29: [ OK ] FreeVolumeModuleTest.ComputesFreeVolumeSelection (165 ms) 29: [----------] 2 tests from FreeVolumeModuleTest (333 ms total) 29: 29: [----------] 7 tests from PairDistanceModuleTest 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistances 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistances (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesAllDistancesWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMinDistanceWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistance 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistance (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesMaxDistanceWithCutoff (4 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMinDistanceWithCutoff (5 ms) 29: [ RUN ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] PairDistanceModuleTest.ComputesGroupedMaxDistanceWithCutoff (4 ms) 29: [----------] 7 tests from PairDistanceModuleTest (30 ms total) 29: 29: [----------] 3 tests from RdfModuleTest 29: [ RUN ] RdfModuleTest.BasicTest 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.BasicTest (31 ms) 29: [ RUN ] RdfModuleTest.CalculatesSurf 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesSurf (18 ms) 29: [ RUN ] RdfModuleTest.CalculatesXY 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] RdfModuleTest.CalculatesXY (38 ms) 29: [----------] 3 tests from RdfModuleTest (87 ms total) 29: 29: [----------] 5 tests from SasaModuleTest 29: [ RUN ] SasaModuleTest.BasicTest 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.BasicTest (17 ms) 29: [ RUN ] SasaModuleTest.HandlesSelectedResidues 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesSelectedResidues (10 ms) 29: [ RUN ] SasaModuleTest.WritesConnollySurfaceWithSolute 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.WritesConnollySurfaceWithSolute (9 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicOutputGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicOutputGroup (12 ms) 29: [ RUN ] SasaModuleTest.HandlesDynamicCalculationGroup 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: Frank Eisenhaber and Philip Lijnzaad and Patrick Argos and Chris Sander and 29: Michael Scharf 29: The Double Cube Lattice Method: Efficient Approaches to Numerical Integration 29: of Surface Area and Volume and to Dot Surface Contouring of Molecular 29: Assemblies 29: J. Comp. Chem. 16 (1995) pp. 273-284 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: NOTE: From version 5.0 trajectoryanalysis-test uses the Van der Waals radii 29: from the source below. This means the results may be different 29: compared to previous GROMACS versions. 29: 29: ++++ PLEASE READ AND CITE THE FOLLOWING REFERENCE ++++ 29: A. Bondi 29: van der Waals Volumes and Radii 29: J. Phys. Chem. 68 (1964) pp. 441-451 29: -------- -------- --- Thank You --- -------- -------- 29: 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: [ OK ] SasaModuleTest.HandlesDynamicCalculationGroup (12 ms) 29: [----------] 5 tests from SasaModuleTest (63 ms total) 29: 29: [----------] 8 tests from SelectModuleTest 29: [ RUN ] SelectModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.BasicTest (8 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithNonPDBInput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesPDBOutputWithPDBInput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesPDBOutputWithPDBInput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesMaxPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesMaxPDBOutput (6 ms) 29: [ RUN ] SelectModuleTest.HandlesSelectedPDBOutput 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.HandlesSelectedPDBOutput (7 ms) 29: [ RUN ] SelectModuleTest.NormalizesSizes 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.NormalizesSizes (4 ms) 29: [ RUN ] SelectModuleTest.WritesResidueNumbers 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueNumbers (4 ms) 29: [ RUN ] SelectModuleTest.WritesResidueIndices 29: 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Analyzed topology coordinates 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] SelectModuleTest.WritesResidueIndices (4 ms) 29: [----------] 8 tests from SelectModuleTest (46 ms total) 29: 29: [----------] 10 tests from SurfaceAreaTest 29: [ RUN ] SurfaceAreaTest.ComputesSinglePoint 29: [ OK ] SurfaceAreaTest.ComputesSinglePoint (0 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPoints 29: [ OK ] SurfaceAreaTest.ComputesTwoPoints (2 ms) 29: [ RUN ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius 29: [ OK ] SurfaceAreaTest.ComputesTwoPointsOfUnequalRadius (2 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints12 29: [ OK ] SurfaceAreaTest.SurfacePoints12 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints32 29: [ OK ] SurfaceAreaTest.SurfacePoints32 (0 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints42 29: [ OK ] SurfaceAreaTest.SurfacePoints42 (1 ms) 29: [ RUN ] SurfaceAreaTest.SurfacePoints122 29: [ OK ] SurfaceAreaTest.SurfacePoints122 (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100Points 29: [ OK ] SurfaceAreaTest.Computes100Points (1 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithRectangularPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithRectangularPBC (4 ms) 29: [ RUN ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC 29: [ OK ] SurfaceAreaTest.Computes100PointsWithTriclinicPBC (4 ms) 29: [----------] 10 tests from SurfaceAreaTest (16 ms total) 29: 29: [----------] 4 tests from TrajectoryModuleTest 29: [ RUN ] TrajectoryModuleTest.BasicTest 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.BasicTest (5 ms) 29: [ RUN ] TrajectoryModuleTest.PlotsXOnly 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.PlotsXOnly (6 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoVelocities 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoVelocities (5 ms) 29: [ RUN ] TrajectoryModuleTest.HandlesNoForces 29: Reading frames from gro file 'Test system', 15 atoms. 29: Reading frame 0 time 0.000 29: WARNING: If there are molecules in the input trajectory file 29: that are broken across periodic boundaries, they 29: cannot be made whole (or treated as whole) without 29: you providing a run input file. 29: 29: Reading frame 1 time 0.000 Last frame 1 time 0.000 29: Analyzed 2 frames, last time 0.000 29: 29: WARNING: Masses and atomic (Van der Waals) radii will be guessed 29: based on residue and atom names, since they could not be 29: definitively assigned from the information in your input 29: files. These guessed numbers might deviate from the mass 29: and radius of the atom type. Please check the output 29: files if necessary. 29: 29: [ OK ] TrajectoryModuleTest.HandlesNoForces (6 ms) 29: [----------] 4 tests from TrajectoryModuleTest (22 ms total) 29: 29: [----------] 5 tests from UnionFinderTest 29: [ RUN ] UnionFinderTest.WorksEmpty 29: [ OK ] UnionFinderTest.WorksEmpty (0 ms) 29: [ RUN ] UnionFinderTest.BasicMerges 29: [ OK ] UnionFinderTest.BasicMerges (0 ms) 29: [ RUN ] UnionFinderTest.LargerMerges 29: [ OK ] UnionFinderTest.LargerMerges (0 ms) 29: [ RUN ] UnionFinderTest.LongRightMerge 29: [ OK ] UnionFinderTest.LongRightMerge (0 ms) 29: [ RUN ] UnionFinderTest.LongLeftMerge 29: [ OK ] UnionFinderTest.LongLeftMerge (1 ms) 29: [----------] 5 tests from UnionFinderTest (1 ms total) 29: 29: [----------] 1 test from MappedUnionFinderTest 29: [ RUN ] MappedUnionFinderTest.BasicMerges 29: [ OK ] MappedUnionFinderTest.BasicMerges (0 ms) 29: [----------] 1 test from MappedUnionFinderTest (0 ms total) 29: 29: [----------] Global test environment tear-down 29: [==========] 68 tests from 13 test cases ran. (691 ms total) 29: [ PASSED ] 68 tests. 29/33 Test #29: TrajectoryAnalysisUnitTests ...... Passed 0.71 sec test 30 Start 30: EnergyAnalysisUnitTests 30: Test command: /<>/build/basic-dp/bin/energyanalysis-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/EnergyAnalysisUnitTests.xml" 30: Test timeout computed to be: 30 30: [==========] Running 7 tests from 4 test cases. 30: [----------] Global test environment set-up. 30: [----------] 1 test from DhdlTest 30: [ RUN ] DhdlTest.ExtractDhdl 30: Opened /<>/src/gromacs/energyanalysis/tests/dhdl.edr as double precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/dhdl.tpr, VERSION 2016-dev-20160810-e3ded7f (double precision) 30: Note: file tpx version 110, software tpx version 112 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.010 Reading energy frame 2 time 0.020 Reading energy frame 3 time 0.030 Reading energy frame 4 time 0.040 Reading energy frame 5 time 0.050 Reading energy frame 6 time 0.060 Reading energy frame 7 time 0.070 Reading energy frame 8 time 0.080 Reading energy frame 9 time 0.090 Reading energy frame 10 time 0.100 Reading energy frame 11 time 0.110 Reading energy frame 12 time 0.120 Reading energy frame 13 time 0.130 Reading energy frame 14 time 0.140 Reading energy frame 15 time 0.150 Reading energy frame 16 time 0.160 Reading energy frame 17 time 0.170 Reading energy frame 18 time 0.180 Reading energy frame 19 time 0.190 Reading energy frame 20 time 0.200 Reading energy frame 30 time 0.300 Reading energy frame 40 time 0.400 Reading energy frame 50 time 0.500 Reading energy frame 60 time 0.600 Reading energy frame 70 time 0.700 Reading energy frame 80 time 0.800 Reading energy frame 90 time 0.900 Reading energy frame 100 time 1.000 Last energy frame read 100 time 1.000 30: 30: 30: Wrote 8 lambda values with 101 samples as 808 dH data blocks to /<>/build/basic-dp/src/gromacs/energyanalysis/tests/Testing/Temporary/DhdlTest_ExtractDhdl_dhdl.xvg 30: [ OK ] DhdlTest.ExtractDhdl (14 ms) 30: [----------] 1 test from DhdlTest (15 ms total) 30: 30: [----------] 1 test from OriresTest 30: [ RUN ] OriresTest.ExtractOrires 30: Opened /<>/src/gromacs/energyanalysis/tests/orires.edr as single precision energy file 30: Reading file /<>/src/gromacs/energyanalysis/tests/orires.tpr, VERSION 2017-dev-20170725-fea8651 (single precision) 30: Note: file tpx version 111, software tpx version 112 30: Found 7 orientation restraints with 1 experimentsSelect the orientation restraint labels you want (-1 is all) 30: End your selection with 0 30: Selecting all 7 orientation restraints 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.002 Reading energy frame 2 time 0.004 Reading energy frame 3 time 0.006 Reading energy frame 4 time 0.008 Reading energy frame 5 time 0.010 Reading energy frame 6 time 0.012 Reading energy frame 7 time 0.014 Reading energy frame 8 time 0.016 Reading energy frame 9 time 0.018 Reading energy frame 10 time 0.020 Last energy frame read 10 time 0.020 30: [ OK ] OriresTest.ExtractOrires (14 ms) 30: [----------] 1 test from OriresTest (15 ms total) 30: 30: [----------] 3 tests from EnergyTest 30: [ RUN ] EnergyTest.ExtractEnergy 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Potential -34142.2 39 228.993 -62.8906 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: [ OK ] EnergyTest.ExtractEnergy (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyByNumber 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 3 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Coul. recip. 302.771 2.8 17.5152 12.5403 (kJ/mol) 30: Kinetic En. 6132.38 0.42 119.428 -0.266996 (kJ/mol) 30: Pres. DC -268.49 3 8.52175 13.2804 (bar) 30: [ OK ] EnergyTest.ExtractEnergyByNumber (4 ms) 30: [ RUN ] EnergyTest.ExtractEnergyMixed 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: 30: Select the terms you want from the following list by 30: selecting either (part of) the name or the number or a combination. 30: End your selection with an empty line or a zero. 30: ------------------------------------------------------------------- 30: 1 LJ-(SR) 2 Disper.-corr. 3 Coulomb-(SR) 4 Coul.-recip. 30: 5 Potential 6 Kinetic-En. 7 Total-Energy 8 Temperature 30: 9 Pres.-DC 10 Pressure 11 Box-X 12 Box-Y 30: 13 Box-Z 14 Volume 15 Density 16 pV 30: 17 Enthalpy 18 Vir-XX 19 Vir-XY 20 Vir-XZ 30: 21 Vir-YX 22 Vir-YY 23 Vir-YZ 24 Vir-ZX 30: 25 Vir-ZY 26 Vir-ZZ 27 Pres-XX 28 Pres-XY 30: 29 Pres-XZ 30 Pres-YX 31 Pres-YY 32 Pres-YZ 30: 33 Pres-ZX 34 Pres-ZY 35 Pres-ZZ 36 #Surf*SurfTen 30: 37 Box-Vel-XX 38 Box-Vel-YY 39 Box-Vel-ZZ 40 T-System 30: 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 4 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Total Energy -28009.8 39 258.637 -63.1577 (kJ/mol) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: Box-Z 2.92457 0.0054 0.0151558 0.0234974 (nm) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: [ OK ] EnergyTest.ExtractEnergyMixed (5 ms) 30: [----------] 3 tests from EnergyTest (14 ms total) 30: 30: [----------] 2 tests from ViscosityTest 30: [ RUN ] ViscosityTest.EinsteinViscosity 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosity (10 ms) 30: [ RUN ] ViscosityTest.EinsteinViscosityIntegral 30: Opened /<>/src/gromacs/energyanalysis/tests/ener.edr as single precision energy file 30: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.200 Reading energy frame 2 time 0.400 Reading energy frame 3 time 0.600 Reading energy frame 4 time 0.800 Reading energy frame 5 time 1.000 Reading energy frame 6 time 1.200 Reading energy frame 7 time 1.400 Reading energy frame 8 time 1.600 Reading energy frame 9 time 1.800 Reading energy frame 10 time 2.000 Reading energy frame 11 time 2.200 Reading energy frame 12 time 2.400 Reading energy frame 13 time 2.600 Reading energy frame 14 time 2.800 Reading energy frame 15 time 3.000 Reading energy frame 16 time 3.200 Reading energy frame 17 time 3.400 Reading energy frame 18 time 3.600 Reading energy frame 19 time 3.800 Reading energy frame 20 time 4.000 Reading energy frame 30 time 6.000 Reading energy frame 40 time 8.000 Reading energy frame 50 time 10.000 Last energy frame read 50 time 10.000 30: 30: Statistics over 5001 steps [ 0.0000 through 10.0000 ps ], 12 data sets 30: All statistics are over 5001 points 30: 30: Energy Average Err.Est. RMSD Tot-Drift 30: ------------------------------------------------------------------------------- 30: Pres-XX 20.2092 65 717.193 185.978 (bar) 30: Pres-XY -47.7351 39 372.522 207.456 (bar) 30: Pres-XZ 11.477 31 379.79 6.80818 (bar) 30: Pres-YX -47.7106 39 372.525 207.5 (bar) 30: Pres-YY 38.9241 40 803.899 -27.1505 (bar) 30: Pres-YZ -41.3534 45 401.216 114.663 (bar) 30: Pres-ZX 11.5238 31 379.804 6.91707 (bar) 30: Pres-ZY -41.3119 45 401.196 114.743 (bar) 30: Pres-ZZ -43.1021 63 748.522 -173.491 (bar) 30: Temperature 300.001 0.02 5.8425 -0.0130558 (K) 30: Volume 25.0162 0.14 0.386769 0.598615 (nm^3) 30: Pressure 5.34371 4.1 605.307 -4.88771 (bar) 30: [ OK ] ViscosityTest.EinsteinViscosityIntegral (9 ms) 30: [----------] 2 tests from ViscosityTest (19 ms total) 30: 30: [----------] Global test environment tear-down 30: [==========] 7 tests from 4 test cases ran. (63 ms total) 30: [ PASSED ] 7 tests. 30/33 Test #30: EnergyAnalysisUnitTests .......... Passed 0.08 sec test 31 Start 31: CompatibilityHelpersTests 31: Test command: /<>/build/basic-dp/bin/compat-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 31: Test timeout computed to be: 30 31: [==========] Running 1 test from 1 test case. 31: [----------] Global test environment set-up. 31: [----------] 1 test from CompatibilityHelper 31: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 31: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 31: [----------] 1 test from CompatibilityHelper (0 ms total) 31: 31: [----------] Global test environment tear-down 31: [==========] 1 test from 1 test case ran. (0 ms total) 31: [ PASSED ] 1 test. 31/33 Test #31: CompatibilityHelpersTests ........ Passed 0.01 sec test 32 Start 32: MdrunTests 32: Test command: /<>/build/basic-dp/bin/mdrun-test "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunTests.xml" 32: Test timeout computed to be: 600 32: [==========] Running 30 tests from 11 test cases. 32: [----------] Global test environment set-up. 32: [----------] 6 tests from BondedInteractionsTest 32: [ RUN ] BondedInteractionsTest.NormalBondWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -542455370 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalBondWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 27 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 114.210 0.210 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalBondWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedBondWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -812554264 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedBondWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 2 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedBondWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 28 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 148.702 0.161 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedBondWorks (20 ms) 32: [ RUN ] BondedInteractionsTest.NormalAngleWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 1463225296 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_NormalAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalAngleWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 20 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 160.633 0.149 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalAngleWorks (16 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedAngleWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -666889479 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: 32: NOTE 3 [file BondedInteractionsTest_TabulatedAngleWorks_butane1.top, line 31]: 32: In moleculetype 'butane' 1 atoms are not bound by a potential or 32: constraint to any other atom in the same moleculetype. Although 32: technically this might not cause issues in a simulation, this often means 32: that the user forgot to add a bond/potential/constraint or put multiple 32: molecules in the same moleculetype definition by mistake. Run with -v to 32: get information for each atom. 32: 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedAngleWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 21 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 99.9 32: (ns/day) (hour/ns) 32: Performance: 168.474 0.142 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedAngleWorks (17 ms) 32: [ RUN ] BondedInteractionsTest.NormalDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -1022651083 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_NormalDihedralWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 21 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 171.342 0.140 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.NormalDihedralWorks (16 ms) 32: [ RUN ] BondedInteractionsTest.TabulatedDihedralWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to -31113108 32: Generated 3 of the 3 non-bonded parameter combinations 32: Excluding 3 bonded neighbours molecule type 'butane' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks_input.mdp]: 32: NVE simulation with an initial temperature of zero: will use a Verlet 32: buffer of 10%. Check your energy drift! 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/BondedInteractionsTest_TabulatedDihedralWorks.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting md rerun 'A single butane', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/butane1.gro' 32: 32: Reading frames from gro file 'A single butane', 4 atoms. 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Last frame 0 time 0.000 32: 32: NOTE: 26 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 150.995 0.159 32: This run will generate roughly 0 Mb of data 32: [ OK ] BondedInteractionsTest.TabulatedDihedralWorks (18 ms) 32: [----------] 6 tests from BondedInteractionsTest (107 ms total) 32: 32: [----------] 1 test from GromppTest 32: [ RUN ] GromppTest.EmptyMdpFileWorks 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp, line 1]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: Setting the LD random seed to 989525487 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/GromppTest_EmptyMdpFileWorks_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.061 nm, buffer size 0.061 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.056 nm, buffer size 0.056 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: [ OK ] GromppTest.EmptyMdpFileWorks (31 ms) 32: [----------] 1 test from GromppTest (31 ms total) 32: 32: [----------] 1 test from CompelTest 32: [ RUN ] CompelTest.SwapCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to -1621601407 32: Generated 330891 of the 330891 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 330891 of the 330891 1-4 parameter combinations 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 1 bonded neighbours molecule type 'NA' 32: Excluding 1 bonded neighbours molecule type 'CL' 32: Excluding 3 bonded neighbours molecule type 'Protein' 32: Excluding 3 bonded neighbours molecule type 'OCT' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Split0 group 'Ch0' contains 83 atoms. 32: Split1 group 'Ch1' contains 83 atoms. 32: Solvent group 'SOL' contains 11931 atoms. 32: Swap group 'NA+' contains 19 atoms. 32: Swap group 'CL-' contains 19 atoms. 32: Number of degrees of freedom in T-Coupling group System is 27869.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/OctaneSandwich.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: SWAP: Determining initial numbers of ions per compartment. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.314 nm, buffer size 0.314 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.260 nm, buffer size 0.260 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 1 Mb of data 32: 32: Writing final coordinates. 32: 32: NOTE: 30 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.816 0.816 100.0 32: (ns/day) (hour/ns) 32: Performance: 1.589 15.107 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.tpr, VERSION 2018.3 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/CompelTest_SwapCanRun.cpt generated: Fri Aug 24 09:36:01 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.01 ps 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: SWAP: Setting pointers for checkpoint writing 32: SWAP: Copying channel fluxes from checkpoint file data 32: SWAP: Channel 0 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 1 flux history for ion type NA+ (charge 1): 0 molecules 32: SWAP: Channel 0 flux history for ion type CL- (charge -1): 0 molecules 32: SWAP: Channel 1 flux history for ion type CL- (charge -1): 0 molecules 32: starting mdrun 'Channel_coco in octane membrane' 32: 4 steps, 0.0 ps (continuing from step 2, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: NOTE: 23 % of the run time was spent in pair search, 32: you might want to increase nstlist (this has no effect on accuracy) 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.632 0.632 100.0 32: (ns/day) (hour/ns) 32: Performance: 2.049 11.712 32: [ OK ] CompelTest.SwapCanRun (2157 ms) 32: [----------] 1 test from CompelTest (2157 ms total) 32: 32: [----------] 1 test from ImdTest 32: [ RUN ] ImdTest.ImdCanRun 32: 32: NOTE 1 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: The Berendsen thermostat does not generate the correct kinetic energy 32: distribution. You might want to consider using the V-rescale thermostat. 32: 32: Setting the LD random seed to -579242099 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Group 'SecondWaterMolecule' with 3 atoms can be activated for interactive molecular dynamics (IMD). 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/src/programs/mdrun/tests/spc2-IMD.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/ImdTest_ImdCanRun.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.126 to 1.358 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: IMD: Enabled. This simulation will accept incoming IMD connections. 32: IMD: You chose a port number < 1. Will automatically assign a free port. 32: IMD: Pulling from IMD remote is enabled (-imdpull). 32: IMD: Turning on IMD - port for incoming requests is 0. 32: IMD: Setting up incoming socket. 32: IMD: Listening for IMD connection on port 38188. 32: IMD: -imdwait not set, starting simulation. 32: starting mdrun 'spc2' 32: 2 steps, 0.0 ps. 32: turning all bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 300 K 32: Calculated rlist for 1x1 atom pair-list as 1.134 nm, buffer size 0.134 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.121 nm, buffer size 0.121 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 215.493 0.111 32: [ OK ] ImdTest.ImdCanRun (23 ms) 32: [----------] 1 test from ImdTest (23 ms total) 32: 32: [----------] 2 tests from MdrunTerminationTest 32: [ RUN ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 311197310 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 1, rlist from 1.025 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 5: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 167.329 0.143 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.tpr, VERSION 2018.3 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_WritesCheckpointAfterMaxhTerminationAndThenRestarts.cpt generated: Fri Aug 24 09:36:02 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.025 to 1.254 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 8 steps, 0.0 ps (continuing from step 6, 0.0 ps). 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.002 0.002 100.0 32: (ns/day) (hour/ns) 32: Performance: 112.322 0.214 32: [ OK ] MdrunTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (32 ms) 32: [ RUN ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 565771591 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 9.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 1, rlist from 1.025 to 1 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 100 steps, 0.1 ps. 32: 32: Step 4: Run time exceeded 0.000 hours, will terminate the run 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.026 nm, buffer size 0.026 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.024 nm, buffer size 0.024 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 174.603 0.137 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.tpr, VERSION 2018.3 (double precision) 32: 32: Reading checkpoint file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunTerminationTest_CheckpointRestartWorksWithNoAppend.cpt generated: Fri Aug 24 09:36:02 2018 32: 32: 32: Overriding nsteps with value passed on the command line: 2 steps, 0.002 ps 32: Changing nstlist from 10 to 80, rlist from 1.025 to 1.254 32: 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc2' 32: 7 steps, 0.0 ps (continuing from step 5, 0.0 ps). 32: Checkpoint file is from part 1, new output files will be suffixed '.part0002'. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 93.071 0.258 32: [ OK ] MdrunTerminationTest.CheckpointRestartWorksWithNoAppend (32 ms) 32: [----------] 2 tests from MdrunTerminationTest (64 ms total) 32: 32: [----------] 1 test from PmeTest 32: [ RUN ] PmeTest.ReproducesEnergies 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp, line 6]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -1246085667 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: NVE simulation: will use the initial temperature of 1046.791 K for 32: determining the Verlet buffer size 32: 32: Estimate for the relative computational load of the PME mesh part: 1.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_input.mdp]: 32: The optimal PME mesh load for parallel simulations is below 0.5 32: and for highly parallel simulations between 0.25 and 0.33, 32: for higher performance, increase the cut-off and the PME grid spacing. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 1046.79 K 32: Calculated rlist for 1x1 atom pair-list as 1.000 nm, buffer size 0.000 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.000 nm, buffer size 0.000 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: Calculating fourier grid dimensions for X Y Z 32: Using a fourier grid of 28x28x28, spacing 0.107 0.107 0.107 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.053 0.053 100.0 32: (ns/day) (hour/ns) 32: Performance: 34.482 0.696 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeAuto.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.053 0.053 100.0 32: (ns/day) (hour/ns) 32: Performance: 34.531 0.695 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpu.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 20 steps, 0.0 ps. 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.053 0.053 100.0 32: (ns/day) (hour/ns) 32: Performance: 33.992 0.706 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/PmeTest_ReproducesEnergies_spc-and-methanol_PmeOnCpuTune.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 Reading energy frame 2 time 0.002 Reading energy frame 3 time 0.003 Reading energy frame 4 time 0.004 Reading energy frame 5 time 0.005 Reading energy frame 6 time 0.006 Reading energy frame 7 time 0.007 Reading energy frame 8 time 0.008 Reading energy frame 9 time 0.009 Reading energy frame 10 time 0.010 Reading energy frame 11 time 0.011 Reading energy frame 12 time 0.012 Reading energy frame 13 time 0.013 Reading energy frame 14 time 0.014 Reading energy frame 15 time 0.015 Reading energy frame 16 time 0.016 Reading energy frame 17 time 0.017 Reading energy frame 18 time 0.018 Reading energy frame 19 time 0.019 Reading energy frame 20 time 0.020 [ OK ] PmeTest.ReproducesEnergies (230 ms) 32: [----------] 1 test from PmeTest (230 ms total) 32: 32: [----------] 3 tests from Checking/InitialConstraintsTest 32: [ RUN ] Checking/InitialConstraintsTest.Works/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 618052081 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 56.993 0.421 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_0_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/0 (45 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1700556404 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 3 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.003 0.003 100.0 32: (ns/day) (hour/ns) 32: Performance: 57.141 0.420 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_1_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/1 (43 ms) 32: [ RUN ] Checking/InitialConstraintsTest.Works/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: Integrator method md-vv-avek is implemented primarily for validation 32: purposes; for molecular dynamics, you should probably be using md or md-vv 32: 32: Setting the LD random seed to 1096745194 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group rest is 11.00 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: NVE simulation: will use the initial temperature of 1141.954 K for 32: determining the Verlet buffer size 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2.tpr, VERSION 2018.3 (double precision) 32: Can not increase nstlist because an NVE ensemble is used 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 1 steps, 0.0 ps. 32: turning H bonds into constraints... 32: turning H bonds into constraints... 32: Determining Verlet buffer for a tolerance of 0.0001 kJ/mol/ps at 1141.95 K 32: Calculated rlist for 1x1 atom pair-list as 1.101 nm, buffer size 0.101 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.096 nm, buffer size 0.096 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 47.827 0.502 32: Opened /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/Checking_InitialConstraintsTest_Works_2_spc-and-methanol.edr as double precision energy file 32: Reading energy frame 0 time 0.000 Reading energy frame 1 time 0.001 [ OK ] Checking/InitialConstraintsTest.Works/2 (44 ms) 32: [----------] 3 tests from Checking/InitialConstraintsTest (132 ms total) 32: 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -733501235 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_0.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.trr' 32: 32: trr version: GMX_trn_file (single precision) 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 325.596 0.074 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/0 (16 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1054238005 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_1.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.tng' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 194.414 0.123 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/1 (16 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -840751861 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_2.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.xtc' 32: 32: Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.000 0.000 99.9 32: (ns/day) (hour/ns) 32: Performance: 439.791 0.055 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/2 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1169232650 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_3.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.gro' 32: 32: Reading frames from gro file '', 6 atoms. 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 286.246 0.084 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/3 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1208936940 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_4.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.pdb' 32: 32: Reading frames from pdb file Reading frame 0 time 0.000 32: WARNING: Some frames do not contain velocities. 32: Ekin, temperature and pressure are incorrect, 32: the virial will be incorrect when constraints are present. 32: 32: 't= 0.00000', 6 atoms 32: Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 332.924 0.072 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/4 (15 ms) 32: [ RUN ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: For a correct single-point energy evaluation with nsteps = 0, use 32: continuation = yes to avoid constraining the input coordinates. 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1188179663 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 5 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 5 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/NoFatalErrorFrom_MdrunRerun_WithDifferentInputFormats_5.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting md rerun 'spc2', reading coordinates from input trajectory '/<>/src/programs/mdrun/tests/../../../gromacs/gmxana/tests/spc2-traj.g96' 32: 32: Reading frame 0 time 0.000 Reading frame 1 time 0.000 Last frame 1 time 0.000 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.001 0.001 100.0 32: (ns/day) (hour/ns) 32: Performance: 271.248 0.088 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: [ OK ] NoFatalErrorFrom/MdrunRerun.WithDifferentInputFormats/5 (15 ms) 32: [----------] 6 tests from NoFatalErrorFrom/MdrunRerun (93 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/Trajectories 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 474955899 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_0.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.008 0.008 100.0 32: (ns/day) (hour/ns) 32: Performance: 77.521 0.310 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/0 (55 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1765836174 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_1.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.007 0.007 100.0 32: (ns/day) (hour/ns) 32: Performance: 82.161 0.292 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/1 (52 ms) 32: [ RUN ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp, line 12]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 2127246310 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_Trajectories_ThatDifferInNstxout_2.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 6 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.007 0.007 100.0 32: (ns/day) (hour/ns) 32: Performance: 85.050 0.282 32: [ OK ] MdrunCanWrite/Trajectories.ThatDifferInNstxout/2 (52 ms) 32: [----------] 3 tests from MdrunCanWrite/Trajectories (159 ms total) 32: 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 1427431463 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_0.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 47.338 0.507 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/0 (51 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to -2081265699 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_1.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 47.727 0.503 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/1 (51 ms) 32: [ RUN ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp, line 13]: 32: /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp did not specify a value for the .mdp option "cutoff-scheme". Probably it 32: was first intended for use with GROMACS before 4.6. In 4.6, the Verlet 32: scheme was introduced, but the group scheme was still the default. The 32: default is now the Verlet scheme, so you will observe different behaviour. 32: 32: Setting the LD random seed to 350008749 32: Generated 279 of the 1225 non-bonded parameter combinations 32: Excluding 2 bonded neighbours molecule type 'Methanol' 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Removing all charge groups because cutoff-scheme=Verlet 32: Number of degrees of freedom in T-Coupling group System is 12.00 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 2 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/MdrunCanWrite_NptTrajectories_WithDifferentPcoupl_2.tpr, VERSION 2018.3 (double precision) 32: Changing nstlist from 10 to 50, rlist from 1.023 to 1.181 32: 32: Using 1 MPI thread 32: Using 1 OpenMP thread 32: 32: 32: NOTE: Thread affinity was not set. 32: starting mdrun 'spc-and-methanol' 32: 2 steps, 0.0 ps. 32: Determining Verlet buffer for a tolerance of 0.005 kJ/mol/ps at 298 K 32: Calculated rlist for 1x1 atom pair-list as 1.025 nm, buffer size 0.025 nm 32: Set rlist, assuming 4x4 atom pair-list, to 1.022 nm, buffer size 0.022 nm 32: Note that mdrun will redetermine rlist based on the actual pair-list setup 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 51.405 0.467 32: [ OK ] MdrunCanWrite/NptTrajectories.WithDifferentPcoupl/2 (48 ms) 32: [----------] 3 tests from MdrunCanWrite/NptTrajectories (150 ms total) 32: 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to -1594119083 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.005 0.005 100.0 32: (ns/day) (hour/ns) 32: Performance: 36.950 0.650 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_0.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/0 (22 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1397560662 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 39.668 0.605 32: Reading frame 0 time 0.000 32: # Atoms 6 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_1.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/1 (20 ms) 32: [ RUN ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 32: 32: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: The group cutoff scheme is deprecated since GROMACS 5.0 and will be 32: removed in a future release when all interaction forms are supported for 32: the verlet scheme. The verlet scheme already scales better, and it is 32: compatible with GPUs and other accelerators. 32: 32: 32: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for VdW interactions with NVE, for good energy 32: conservation use vdwtype = Shift (possibly with DispCorr) 32: 32: 32: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a cut-off for electrostatics with NVE, for good energy 32: conservation use coulombtype = PME-Switch or Reaction-Field-zero 32: 32: Setting the LD random seed to 1411220242 32: Generated 3 of the 3 non-bonded parameter combinations 32: Generating 1-4 interactions: fudge = 0.5 32: Generated 3 of the 3 1-4 parameter combinations 32: Excluding 2 bonded neighbours molecule type 'SOL' 32: Number of degrees of freedom in T-Coupling group rest is 9.00 32: 32: NOTE 4 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2_input.mdp]: 32: You are using a plain Coulomb cut-off, which might produce artifacts. 32: You might want to consider using PME electrostatics. 32: 32: 32: 32: There were 4 notes 32: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.tpr, VERSION 2018.3 (double precision) 32: Using 1 MPI thread 32: 32: 32: NOTE: Thread affinity was not set. 32: 32: NOTE: This file uses the deprecated 'group' cutoff_scheme. This will be 32: removed in a future release when 'verlet' supports all interaction forms. 32: 32: starting mdrun 'spc2' 32: 1 steps, 0.0 ps. 32: Largest charge group radii for Van der Waals: 0.039, 0.039 nm 32: Largest charge group radii for Coulomb: 0.084, 0.084 nm 32: This run will generate roughly 0 Mb of data 32: 32: Writing final coordinates. 32: 32: Core t (s) Wall t (s) (%) 32: Time: 0.004 0.004 100.0 32: (ns/day) (hour/ns) 32: Performance: 44.394 0.541 32: Reading frame 0 time 0.000 32: # Atoms 3 32: Reading frame 1 time 0.001 Last frame 1 time 0.001 32: 32: 32: Item #frames Timestep (ps) 32: Step 2 0.001 32: Time 2 0.001 32: Lambda 0 32: Coords 2 0.001 32: Velocities 0 32: Forces 0 32: Box 2 0.001 32: Checking file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/WithDifferentOutputGroupSettings_MdrunCompressedXOutput_ExitsNormally_2.xtc 32: [ OK ] WithDifferentOutputGroupSettings/MdrunCompressedXOutput.ExitsNormally/2 (19 ms) 32: [----------] 3 tests from WithDifferentOutputGroupSettings/MdrunCompressedXOutput (61 ms total) 32: 32: [----------] Global test environment tear-down 32: [==========] 30 tests from 11 test cases ran. (3207 ms total) 32: [ PASSED ] 30 tests. 32/33 Test #32: MdrunTests ....................... Passed 3.27 sec test 33 Start 33: MdrunMpiTests 33: Test command: /<>/build/basic-dp/bin/mdrun-mpi-test "-ntmpi" "2" "--gtest_output=xml:/<>/build/basic-dp/Testing/Temporary/MdrunMpiTests.xml" 33: Test timeout computed to be: 600 33: [==========] Running 3 tests from 3 test cases. 33: [----------] Global test environment set-up. 33: [----------] 1 test from MultiSimTerminationTest 33: [ RUN ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] MultiSimTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (1 ms) 33: [----------] 1 test from MultiSimTerminationTest (1 ms total) 33: 33: [----------] 1 test from ReplicaExchangeTerminationTest 33: [ RUN ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts 33: [ OK ] ReplicaExchangeTerminationTest.WritesCheckpointAfterMaxhTerminationAndThenRestarts (0 ms) 33: [----------] 1 test from ReplicaExchangeTerminationTest (0 ms total) 33: 33: [----------] 1 test from DomainDecompositionSpecialCasesTest 33: [ RUN ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks 33: 33: NOTE 1 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: For a correct single-point energy evaluation with nsteps = 0, use 33: continuation = yes to avoid constraining the input coordinates. 33: 33: Setting the LD random seed to -1492959832 33: Generated 3 of the 3 non-bonded parameter combinations 33: Generating 1-4 interactions: fudge = 0.5 33: Generated 3 of the 3 1-4 parameter combinations 33: Excluding 2 bonded neighbours molecule type 'SOL' 33: Removing all charge groups because cutoff-scheme=Verlet 33: Number of degrees of freedom in T-Coupling group rest is 9.00 33: 33: NOTE 2 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: NVE simulation with an initial temperature of zero: will use a Verlet 33: buffer of 10%. Check your energy drift! 33: 33: 33: NOTE 3 [file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks_input.mdp]: 33: You are using a plain Coulomb cut-off, which might produce artifacts. 33: You might want to consider using PME electrostatics. 33: 33: 33: 33: There were 3 notes 33: Reading file /<>/build/basic-dp/src/programs/mdrun/tests/Testing/Temporary/DomainDecompositionSpecialCasesTest_AnEmptyDomainWorks.tpr, VERSION 2018.3 (double precision) 33: Can not increase nstlist because an NVE ensemble is used 33: Using 2 MPI threads 33: Using 1 OpenMP thread per tMPI thread 33: 33: 33: NOTE: The number of threads is not equal to the number of (logical) cores 33: and the -pin option is set to auto: will not pin threads to cores. 33: This can lead to significant performance degradation. 33: Consider using -pin on (and -pinoffset in case you run multiple jobs). 33: starting mdrun 'spc2' 33: 0 steps, 0.0 ps. 33: 33: NOTE: 13 % of the run time was spent in domain decomposition, 33: 53 % of the run time was spent in pair search, 33: you might want to increase nstlist (this has no effect on accuracy) 33: 33: Core t (s) Wall t (s) (%) 33: Time: 0.001 0.001 199.9 33: (ns/day) (hour/ns) 33: Performance: 136.364 0.176 33: This run will generate roughly 0 Mb of data 33: [ OK ] DomainDecompositionSpecialCasesTest.AnEmptyDomainWorks (20 ms) 33: [----------] 1 test from DomainDecompositionSpecialCasesTest (20 ms total) 33: 33: [----------] Global test environment tear-down 33: [==========] 3 tests from 3 test cases ran. (21 ms total) 33: [ PASSED ] 3 tests. 33: 33: YOU HAVE 4 DISABLED TESTS 33: 33/33 Test #33: MdrunMpiTests .................... Passed 0.04 sec 100% tests passed, 0 tests failed out of 33 Label Time Summary: GTest = 7.24 sec*proc (33 tests) IntegrationTest = 3.36 sec*proc (3 tests) MpiTest = 0.10 sec*proc (3 tests) UnitTest = 3.88 sec*proc (30 tests) Total Test time (real) = 7.30 sec touch build-basic dh_testdir /usr/bin/make -j4 -C build/mpich make[1]: Entering directory '/<>/build/mpich' /usr/bin/cmake -H/<> -B/<>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles /<>/build/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich /<>/build/mpich/src/programs /<>/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/mpich' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/mpich' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/mpich/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/mpich/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomprop.cpp.o -c /<>/src/gromacs/topology/atomprop.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atoms.cpp.o -c /<>/src/gromacs/topology/atoms.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/atomsbuilder.cpp.o -c /<>/src/gromacs/topology/atomsbuilder.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/block.cpp.o -c /<>/src/gromacs/topology/block.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/idef.cpp.o -c /<>/src/gromacs/topology/idef.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/ifunc.cpp.o -c /<>/src/gromacs/topology/ifunc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/index.cpp.o -c /<>/src/gromacs/topology/index.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/residuetypes.cpp.o -c /<>/src/gromacs/topology/residuetypes.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/symtab.cpp.o -c /<>/src/gromacs/topology/symtab.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topology.cpp.o -c /<>/src/gromacs/topology/topology.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/topsort.cpp.o -c /<>/src/gromacs/topology/topsort.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/alignedallocator.cpp.o -c /<>/src/gromacs/utility/alignedallocator.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/basenetwork.cpp.o -c /<>/src/gromacs/utility/basenetwork.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<>/src/gromacs/utility/baseversion.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<>/src/gromacs/utility/binaryinformation.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/compare.cpp.o -c /<>/src/gromacs/utility/compare.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/coolstuff.cpp.o -c /<>/src/gromacs/utility/coolstuff.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/datafilefinder.cpp.o -c /<>/src/gromacs/utility/datafilefinder.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/directoryenumerator.cpp.o -c /<>/src/gromacs/utility/directoryenumerator.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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-isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o 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-std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/abstractsection.cpp.o -c /<>/src/gromacs/options/abstractsection.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/basicoptions.cpp.o -c /<>/src/gromacs/options/basicoptions.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsection.cpp.o -c /<>/src/gromacs/options/optionsection.cpp cd /<>/build/mpich/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsvisitor.cpp.o -c 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/usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /<>/src/programs/mdrun_main.cpp cd /<>/build/mpich/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../bin/mdrun_mpi.mpich ../../lib/libgromacs_mdrun_mpi.mpich.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lm make[3]: Leaving directory '/<>/build/mpich' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/mpich' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 0 make[1]: Leaving directory '/<>/build/mpich' /usr/bin/make -j4 -C build/mpich-dp make[1]: Entering directory '/<>/build/mpich-dp' /usr/bin/cmake -H/<> -B/<>/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles /<>/build/mpich-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich-dp /<>/build/mpich-dp/src/programs /<>/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/mpich-dp/src/programs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/mpich-dp' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/mpich-dp' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/mpich-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/mpich-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/invblock.cpp.o -c /<>/src/gromacs/topology/invblock.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/topology/mtop_util.cpp.o -c /<>/src/gromacs/topology/mtop_util.cpp cd /<>/build/mpich-dp/src/gromacs && 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops 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-DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicc.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/hostallocator.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/gpu_utils.cpp.o -c /<>/src/gromacs/gpu_utils/gpu_utils.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 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-I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/hardware/gpu_hw_info.cpp.o -c /<>/src/gromacs/hardware/gpu_hw_info.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdrunutility/mdmodules.cpp.o -c /<>/src/gromacs/mdrunutility/mdmodules.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/mpich-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/mpich-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/optionsassigner.cpp.o -c /<>/src/gromacs/options/optionsassigner.cpp cd /<>/build/mpich-dp/src/gromacs && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 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make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/mpich' Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build Scanning dependencies of target gmock [ 3%] Built target tng_io_obj make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build Scanning dependencies of target onlinehelp-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Leaving directory '/<>/build/mpich' make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/mpich' [ 80%] Built target libgromacs cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/mpich' [ 81%] Built target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/mpich' [ 81%] Built target onlinehelp-test-shared cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/mpich/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/mpich' [ 81%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/mpich /<>/build/mpich/src/testutils /<>/build/mpich/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/mpich/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/mpich/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/mpich/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/mpich' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend make[4]: Entering directory '/<>/build/mpich' make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich /<>/build/mpich/src/testutils/tests /<>/build/mpich/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/mpich /<>/build/mpich/src/gromacs/compat/tests /<>/build/mpich/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich /<>/build/mpich/src/testutils/tests /<>/build/mpich/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdlib/tests /<>/build/mpich/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/mpich' make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp Scanning dependencies of target testutils-test make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/mpich/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 83%] Built target compat-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/mpich /<>/build/mpich/src/gromacs/applied-forces/tests /<>/build/mpich/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Leaving directory '/<>/build/mpich' make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp [ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/mpich /<>/build/mpich/src/gromacs/listed-forces/tests /<>/build/mpich/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/mpich/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/mpich /<>/build/mpich/src/gromacs/commandline/tests /<>/build/mpich/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/mpich/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/mpich /<>/build/mpich/src/gromacs/ewald/tests /<>/build/mpich/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/mpich /<>/build/mpich/src/gromacs/fft/tests /<>/build/mpich/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/mpich /<>/build/mpich/src/gromacs/gpu_utils/tests /<>/build/mpich/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/mpich/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/mpich /<>/build/mpich/src/gromacs/hardware/tests /<>/build/mpich/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 86%] Built target hardware-test cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/mpich /<>/build/mpich/src/gromacs/math/tests /<>/build/mpich/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/mpich/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdrunutility/tests /<>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/mdrunutility/tests /<>/build/mpich/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 87%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/mpich /<>/build/mpich/src/gromacs/onlinehelp/tests /<>/build/mpich/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/mpich/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 88%] Built target commandline-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/mpich /<>/build/mpich/src/gromacs/options/tests /<>/build/mpich/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 89%] Built target ewald-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/mpich /<>/build/mpich/src/gromacs/random/tests /<>/build/mpich/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp make[4]: Leaving directory '/<>/build/mpich' [ 89%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/mpich /<>/build/mpich/src/gromacs/tables/tests /<>/build/mpich/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 90%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/mpich /<>/build/mpich/src/gromacs/taskassignment/tests /<>/build/mpich/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/mpich/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp make[4]: Leaving directory '/<>/build/mpich' [ 90%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/mpich /<>/build/mpich/src/gromacs/utility/tests /<>/build/mpich/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 91%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/mpich /<>/build/mpich/src/gromacs/fileio/tests /<>/build/mpich/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 92%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/mpich /<>/build/mpich/src/gromacs/pulling/tests /<>/build/mpich/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/<>/build/mpich' [ 92%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/mpich /<>/build/mpich/src/gromacs/awh/tests /<>/build/mpich/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 94%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/mpich /<>/build/mpich/src/gromacs/simd/tests /<>/build/mpich/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/mpich/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp make[4]: Leaving directory '/<>/build/mpich' [ 94%] Built target awh-test cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/mpich/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp make[4]: Leaving directory '/<>/build/mpich' [ 95%] Built target options-test cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich' [ 97%] Built target simd-test make[4]: Leaving directory '/<>/build/mpich' [100%] Built target utility-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/mpich /<>/build/mpich /<>/build/mpich/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/mpich' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/mpich' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/mpich' [100%] Built target tests make[3]: Leaving directory '/<>/build/mpich' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 0 make[2]: Leaving directory '/<>/build/mpich' make[1]: Leaving directory '/<>/build/mpich' (cd build/mpich; LD_LIBRARY_PATH=/<>/build/mpich/lib ctest -V) UpdateCTestConfiguration from :/<>/build/mpich/DartConfiguration.tcl Parse Config file:/<>/build/mpich/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/mpich/DartConfiguration.tcl Parse Config file:/<>/build/mpich/DartConfiguration.tcl Test project /<>/build/mpich Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/mpich/bin/testutils-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (0 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) 1: [----------] 34 tests from ReferenceDataTest (15 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (24 ms total) 1: [ PASSED ] 59 tests. 1/24 Test #1: TestUtilsUnitTests ............... Passed 0.05 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.mpich "-np" "2" "/<>/build/mpich/bin/testutils-mpi-test" "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) 2: [----------] 1 test from MpiSelfTest (1 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/24 Test #2: TestUtilsMpiUnitTests ............ Passed 0.04 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/mpich/bin/mdlib-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (1 ms) 3: [----------] 1 test from VerletBufferConstraintTest (1 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (1 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/24 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/mpich/bin/applied-forces-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (0 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (0 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/24 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/mpich/bin/listed-forces-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (1 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/24 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/mpich/bin/commandline-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (5 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (13 ms total) 6: [ PASSED ] 57 tests. 6/24 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/mpich/bin/ewald-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (3 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (50 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (110 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (29 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (27 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (24 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (29 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (8 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (77 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (386 ms total) 7: [ PASSED ] 257 tests. 7/24 Test #7: EwaldUnitTests ................... Passed 0.45 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/mpich/bin/fft-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) 8: [----------] 2 tests from ManyFFTTest (18 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) 8: [----------] 1 test from FFTTest (4 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (3 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (24 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (50 ms total) 8: [ PASSED ] 14 tests. 8/24 Test #8: FFTUnitTests ..................... Passed 0.07 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/mpich/bin/gpu_utils-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (3 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = float 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (4 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (3 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (11 ms total) 9: [ PASSED ] 30 tests. 9/24 Test #9: GpuUtilsUnitTests ................ Passed 0.03 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/mpich/bin/hardware-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (7 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (6 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (6 ms) 10: [----------] 4 tests from HardwareTopologyTest (26 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (27 ms total) 10: [ PASSED ] 4 tests. 10/24 Test #10: HardwareUnitTests ................ Passed 0.05 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/mpich/bin/math-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (0 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (0 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (1 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (1 ms) 11: [----------] 21 tests from FunctionTest (4 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (5 ms total) 11: [ PASSED ] 31 tests. 11/24 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/mpich/bin/mdrunutility-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) 12: [----------] 17 tests from ThreadAffinityTest (8 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (8 ms total) 12: [ PASSED ] 17 tests. 12/24 Test #12: MdrunUtilityUnitTests ............ Passed 0.03 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /usr/bin/mpiexec.mpich "-np" "4" "/<>/build/mpich/bin/mdrunutility-mpi-test" "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (2 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (9 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (11 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (20 ms total) 13: [ PASSED ] 13 tests. 13/24 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.06 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/mpich/bin/onlinehelp-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (1 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (1 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (1 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 14: [----------] 11 tests from HelpWriterContextTest (2 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (5 ms total) 14: [ PASSED ] 22 tests. 14/24 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/mpich/bin/options-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (0 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (1 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (2 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 15: [----------] 1 test from OptionsTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (0 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (1 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (1 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (1 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (1 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 15: [----------] 8 tests from TreeValueSupportTest (1 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (10 ms total) 15: [ PASSED ] 110 tests. 15/24 Test #15: OptionsUnitTests ................. Passed 0.03 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/mpich/bin/random-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (1 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (0 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (0 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (0 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from NormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (0 ms) 16: [----------] 1 test from SeedTest (0 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (1 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (1 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (0 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (7 ms total) 16: [ PASSED ] 44 tests. 16/24 Test #16: RandomUnitTests .................. Passed 0.04 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/mpich/bin/table-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 20 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (1 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (35 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (68 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (73 ms) 17: [ RUN ] SplineTableTest/0.Simd 17: [ OK ] SplineTableTest/0.Simd (17 ms) 17: [ RUN ] SplineTableTest/0.SimdTwoFunctions 17: [ OK ] SplineTableTest/0.SimdTwoFunctions (66 ms) 17: [----------] 10 tests from SplineTableTest/0 (270 ms total) 17: 17: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (1 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (6 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (11 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (12 ms) 17: [ RUN ] SplineTableTest/1.Simd 17: [ OK ] SplineTableTest/1.Simd (4 ms) 17: [ RUN ] SplineTableTest/1.SimdTwoFunctions 17: [ OK ] SplineTableTest/1.SimdTwoFunctions (11 ms) 17: [----------] 10 tests from SplineTableTest/1 (55 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 20 tests from 2 test cases ran. (325 ms total) 17: [ PASSED ] 20 tests. 17/24 Test #17: TableUnitTests ................... Passed 0.34 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/mpich/bin/taskassignment-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (1 ms total) 18: [ PASSED ] 3 tests. 18/24 Test #18: TaskAssignmentUnitTests .......... Passed 0.02 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/mpich/bin/utility-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (0 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (1 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 19: [----------] 6 tests from TreeValueTransformTest (1 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (1 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (0 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (1 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (11 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (11 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 19: [----------] 2 tests from PathTest (1 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 19: [----------] 7 tests from StringUtilityTest (0 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (1 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (1 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (0 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (0 ms) 19: [----------] 1 test from formatAndJoinTest (0 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (1 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (1 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (0 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (1 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (1 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (29 ms total) 19: [ PASSED ] 307 tests. 19/24 Test #19: UtilityUnitTests ................. Passed 0.06 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/mpich/bin/fileio-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (0 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (1 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (1 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (0 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (5 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (6 ms total) 20: [ PASSED ] 15 tests. 20/24 Test #20: FileIOTests ...................... Passed 0.02 sec test 21 Start 21: PullTest 21: Test command: /<>/build/mpich/bin/pull-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (0 ms total) 21: [ PASSED ] 5 tests. 21/24 Test #21: PullTest ......................... Passed 0.02 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/mpich/bin/awh-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (1 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (1 ms) 22: [----------] 1 test from gridTest (1 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) 22: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (8 ms total) 22: [ PASSED ] 12 tests. 22/24 Test #22: AwhTest .......................... Passed 0.03 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/mpich/bin/simd-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 277 tests from 22 test cases. 23: [----------] Global test environment set-up. 23: [----------] 9 tests from SimdBootstrapTest 23: [ RUN ] SimdBootstrapTest.loadStore 23: [ OK ] SimdBootstrapTest.loadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.loadU 23: [ OK ] SimdBootstrapTest.loadU (0 ms) 23: [ RUN ] SimdBootstrapTest.storeU 23: [ OK ] SimdBootstrapTest.storeU (0 ms) 23: [ RUN ] SimdBootstrapTest.loadStoreI 23: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 23: [ RUN ] SimdBootstrapTest.loadUI 23: [ OK ] SimdBootstrapTest.loadUI (0 ms) 23: [ RUN ] SimdBootstrapTest.storeUI 23: [ OK ] SimdBootstrapTest.storeUI (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4LoadStore 23: [ OK ] SimdBootstrapTest.simd4LoadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4LoadU 23: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 23: [ RUN ] SimdBootstrapTest.simd4StoreU 23: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) 23: [----------] 9 tests from SimdBootstrapTest (0 ms total) 23: 23: [----------] 1 test from SimdTest 23: [ RUN ] SimdTest.GmxAligned 23: [ OK ] SimdTest.GmxAligned (0 ms) 23: [----------] 1 test from SimdTest (0 ms total) 23: 23: [----------] 42 tests from SimdFloatingpointTest 23: [ RUN ] SimdFloatingpointTest.setZero 23: [ OK ] SimdFloatingpointTest.setZero (0 ms) 23: [ RUN ] SimdFloatingpointTest.set 23: [ OK ] SimdFloatingpointTest.set (0 ms) 23: [ RUN ] SimdFloatingpointTest.add 23: [ OK ] SimdFloatingpointTest.add (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskAdd 23: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 23: [ RUN ] SimdFloatingpointTest.sub 23: [ OK ] SimdFloatingpointTest.sub (0 ms) 23: [ RUN ] SimdFloatingpointTest.mul 23: [ OK ] SimdFloatingpointTest.mul (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzMul 23: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 23: [ RUN ] SimdFloatingpointTest.fma 23: [ OK ] SimdFloatingpointTest.fma (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzFma 23: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fms 23: [ OK ] SimdFloatingpointTest.fms (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnma 23: [ OK ] SimdFloatingpointTest.fnma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnms 23: [ OK ] SimdFloatingpointTest.fnms (0 ms) 23: [ RUN ] SimdFloatingpointTest.abs 23: [ OK ] SimdFloatingpointTest.abs (0 ms) 23: [ RUN ] SimdFloatingpointTest.neg 23: [ OK ] SimdFloatingpointTest.neg (0 ms) 23: [ RUN ] SimdFloatingpointTest.and 23: [ OK ] SimdFloatingpointTest.and (0 ms) 23: [ RUN ] SimdFloatingpointTest.or 23: [ OK ] SimdFloatingpointTest.or (0 ms) 23: [ RUN ] SimdFloatingpointTest.xor 23: [ OK ] SimdFloatingpointTest.xor (0 ms) 23: [ RUN ] SimdFloatingpointTest.andNot 23: [ OK ] SimdFloatingpointTest.andNot (0 ms) 23: [ RUN ] SimdFloatingpointTest.max 23: [ OK ] SimdFloatingpointTest.max (0 ms) 23: [ RUN ] SimdFloatingpointTest.min 23: [ OK ] SimdFloatingpointTest.min (0 ms) 23: [ RUN ] SimdFloatingpointTest.round 23: [ OK ] SimdFloatingpointTest.round (0 ms) 23: [ RUN ] SimdFloatingpointTest.roundMode 23: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 23: [ RUN ] SimdFloatingpointTest.trunc 23: [ OK ] SimdFloatingpointTest.trunc (0 ms) 23: [ RUN ] SimdFloatingpointTest.frexp 23: [ OK ] SimdFloatingpointTest.frexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.ldexp 23: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.rsqrt 23: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRsqrt 23: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.rcp 23: [ OK ] SimdFloatingpointTest.rcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRcp 23: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.selectByNotMask 23: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpNe 23: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLe 23: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLt 23: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 23: [ RUN ] SimdFloatingpointTest.testBits 23: [ OK ] SimdFloatingpointTest.testBits (0 ms) 23: [ RUN ] SimdFloatingpointTest.andB 23: [ OK ] SimdFloatingpointTest.andB (0 ms) 23: [ RUN ] SimdFloatingpointTest.orB 23: [ OK ] SimdFloatingpointTest.orB (0 ms) 23: [ RUN ] SimdFloatingpointTest.anyTrueB 23: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 23: [ RUN ] SimdFloatingpointTest.blend 23: [ OK ] SimdFloatingpointTest.blend (0 ms) 23: [ RUN ] SimdFloatingpointTest.reduce 23: [ OK ] SimdFloatingpointTest.reduce (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 23: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 23: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 23: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 23: 23: [----------] 16 tests from SimdFloatingpointUtilTest 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (1 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 23: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 23: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.loadUNDuplicate4 23: [ OK ] SimdFloatingpointUtilTest.loadUNDuplicate4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.load4DuplicateN 23: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 23: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) 23: [----------] 16 tests from SimdFloatingpointUtilTest (1 ms total) 23: 23: [----------] 3 tests from SimdVectorOperationsTest 23: [ RUN ] SimdVectorOperationsTest.iprod 23: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 23: [ RUN ] SimdVectorOperationsTest.norm2 23: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 23: [ RUN ] SimdVectorOperationsTest.cprod 23: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 23: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 23: 23: [----------] 45 tests from SimdMathTest 23: [ RUN ] SimdMathTest.copysign 23: [ OK ] SimdMathTest.copysign (0 ms) 23: [ RUN ] SimdMathTest.invsqrt 23: [ OK ] SimdMathTest.invsqrt (0 ms) 23: [ RUN ] SimdMathTest.maskzInvsqrt 23: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdMathTest.invsqrtPair 23: [ OK ] SimdMathTest.invsqrtPair (1 ms) 23: [ RUN ] SimdMathTest.sqrt 23: [ OK ] SimdMathTest.sqrt (0 ms) 23: [ RUN ] SimdMathTest.sqrtUnsafe 23: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 23: [ RUN ] SimdMathTest.inv 23: [ OK ] SimdMathTest.inv (0 ms) 23: [ RUN ] SimdMathTest.maskzInv 23: [ OK ] SimdMathTest.maskzInv (0 ms) 23: [ RUN ] SimdMathTest.log 23: [ OK ] SimdMathTest.log (1 ms) 23: [ RUN ] SimdMathTest.exp2 23: [ OK ] SimdMathTest.exp2 (2 ms) 23: [ RUN ] SimdMathTest.exp2Unsafe 23: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 23: [ RUN ] SimdMathTest.exp 23: [ OK ] SimdMathTest.exp (2 ms) 23: [ RUN ] SimdMathTest.expUnsafe 23: [ OK ] SimdMathTest.expUnsafe (0 ms) 23: [ RUN ] SimdMathTest.erf 23: [ OK ] SimdMathTest.erf (1 ms) 23: [ RUN ] SimdMathTest.erfc 23: [ OK ] SimdMathTest.erfc (2 ms) 23: [ RUN ] SimdMathTest.sin 23: [ OK ] SimdMathTest.sin (2 ms) 23: [ RUN ] SimdMathTest.cos 23: [ OK ] SimdMathTest.cos (2 ms) 23: [ RUN ] SimdMathTest.tan 23: [ OK ] SimdMathTest.tan (9 ms) 23: [ RUN ] SimdMathTest.asin 23: [ OK ] SimdMathTest.asin (1 ms) 23: [ RUN ] SimdMathTest.acos 23: [ OK ] SimdMathTest.acos (1 ms) 23: [ RUN ] SimdMathTest.atan 23: [ OK ] SimdMathTest.atan (1 ms) 23: [ RUN ] SimdMathTest.atan2 23: [ OK ] SimdMathTest.atan2 (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrection 23: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrection 23: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 23: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracy 23: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 23: [ RUN ] SimdMathTest.invSingleAccuracy 23: [ OK ] SimdMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.logSingleAccuracy 23: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracy 23: [ OK ] SimdMathTest.exp2SingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 23: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracy 23: [ OK ] SimdMathTest.expSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erfSingleAccuracy 23: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.erfcSingleAccuracy 23: [ OK ] SimdMathTest.erfcSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.sinSingleAccuracy 23: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.cosSingleAccuracy 23: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.tanSingleAccuracy 23: [ OK ] SimdMathTest.tanSingleAccuracy (9 ms) 23: [ RUN ] SimdMathTest.asinSingleAccuracy 23: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.acosSingleAccuracy 23: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atanSingleAccuracy 23: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atan2SingleAccuracy 23: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 23: [----------] 45 tests from SimdMathTest (64 ms total) 23: 23: [----------] 1 test from EmptyArrayRefTest 23: [ RUN ] EmptyArrayRefTest.IsEmpty 23: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 23: [----------] 1 test from EmptyArrayRefTest (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/2 (1 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/0.Assignment 23: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/1.Assignment 23: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/0.Basic 23: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/1.Basic 23: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 23: 23: [----------] 23 tests from SimdIntegerTest 23: [ RUN ] SimdIntegerTest.setZero 23: [ OK ] SimdIntegerTest.setZero (0 ms) 23: [ RUN ] SimdIntegerTest.set 23: [ OK ] SimdIntegerTest.set (0 ms) 23: [ RUN ] SimdIntegerTest.add 23: [ OK ] SimdIntegerTest.add (0 ms) 23: [ RUN ] SimdIntegerTest.sub 23: [ OK ] SimdIntegerTest.sub (0 ms) 23: [ RUN ] SimdIntegerTest.mul 23: [ OK ] SimdIntegerTest.mul (0 ms) 23: [ RUN ] SimdIntegerTest.and 23: [ OK ] SimdIntegerTest.and (0 ms) 23: [ RUN ] SimdIntegerTest.andNot 23: [ OK ] SimdIntegerTest.andNot (0 ms) 23: [ RUN ] SimdIntegerTest.or 23: [ OK ] SimdIntegerTest.or (0 ms) 23: [ RUN ] SimdIntegerTest.xor 23: [ OK ] SimdIntegerTest.xor (0 ms) 23: [ RUN ] SimdIntegerTest.extract 23: [ OK ] SimdIntegerTest.extract (0 ms) 23: [ RUN ] SimdIntegerTest.cvtR2I 23: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvttR2I 23: [ OK ] SimdIntegerTest.cvttR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvtI2R 23: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpLt 23: [ OK ] SimdIntegerTest.cmpLt (0 ms) 23: [ RUN ] SimdIntegerTest.testBits 23: [ OK ] SimdIntegerTest.testBits (0 ms) 23: [ RUN ] SimdIntegerTest.andB 23: [ OK ] SimdIntegerTest.andB (0 ms) 23: [ RUN ] SimdIntegerTest.orB 23: [ OK ] SimdIntegerTest.orB (0 ms) 23: [ RUN ] SimdIntegerTest.anyTrue 23: [ OK ] SimdIntegerTest.anyTrue (0 ms) 23: [ RUN ] SimdIntegerTest.blend 23: [ OK ] SimdIntegerTest.blend (0 ms) 23: [ RUN ] SimdIntegerTest.cvtB2IB 23: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 23: [ RUN ] SimdIntegerTest.cvtIB2B 23: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 23: [----------] 23 tests from SimdIntegerTest (0 ms total) 23: 23: [----------] 32 tests from Simd4FloatingpointTest 23: [ RUN ] Simd4FloatingpointTest.setZero 23: [ OK ] Simd4FloatingpointTest.setZero (0 ms) 23: [ RUN ] Simd4FloatingpointTest.set 23: [ OK ] Simd4FloatingpointTest.set (0 ms) 23: [ RUN ] Simd4FloatingpointTest.add 23: [ OK ] Simd4FloatingpointTest.add (0 ms) 23: [ RUN ] Simd4FloatingpointTest.sub 23: [ OK ] Simd4FloatingpointTest.sub (0 ms) 23: [ RUN ] Simd4FloatingpointTest.mul 23: [ OK ] Simd4FloatingpointTest.mul (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fma 23: [ OK ] Simd4FloatingpointTest.fma (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fms 23: [ OK ] Simd4FloatingpointTest.fms (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fnma 23: [ OK ] Simd4FloatingpointTest.fnma (0 ms) 23: [ RUN ] Simd4FloatingpointTest.fnms 23: [ OK ] Simd4FloatingpointTest.fnms (0 ms) 23: [ RUN ] Simd4FloatingpointTest.abs 23: [ OK ] Simd4FloatingpointTest.abs (0 ms) 23: [ RUN ] Simd4FloatingpointTest.neg 23: [ OK ] Simd4FloatingpointTest.neg (0 ms) 23: [ RUN ] Simd4FloatingpointTest.and 23: [ OK ] Simd4FloatingpointTest.and (0 ms) 23: [ RUN ] Simd4FloatingpointTest.or 23: [ OK ] Simd4FloatingpointTest.or (0 ms) 23: [ RUN ] Simd4FloatingpointTest.xor 23: [ OK ] Simd4FloatingpointTest.xor (0 ms) 23: [ RUN ] Simd4FloatingpointTest.andNot 23: [ OK ] Simd4FloatingpointTest.andNot (0 ms) 23: [ RUN ] Simd4FloatingpointTest.max 23: [ OK ] Simd4FloatingpointTest.max (0 ms) 23: [ RUN ] Simd4FloatingpointTest.min 23: [ OK ] Simd4FloatingpointTest.min (0 ms) 23: [ RUN ] Simd4FloatingpointTest.round 23: [ OK ] Simd4FloatingpointTest.round (0 ms) 23: [ RUN ] Simd4FloatingpointTest.trunc 23: [ OK ] Simd4FloatingpointTest.trunc (0 ms) 23: [ RUN ] Simd4FloatingpointTest.gmxSimd4RsqrtR 23: [ OK ] Simd4FloatingpointTest.gmxSimd4RsqrtR (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] Simd4FloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] Simd4FloatingpointTest.selectByNotMask 23: [ OK ] Simd4FloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpNe 23: [ OK ] Simd4FloatingpointTest.cmpNe (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpLe 23: [ OK ] Simd4FloatingpointTest.cmpLe (0 ms) 23: [ RUN ] Simd4FloatingpointTest.cmpLt 23: [ OK ] Simd4FloatingpointTest.cmpLt (0 ms) 23: [ RUN ] Simd4FloatingpointTest.andB 23: [ OK ] Simd4FloatingpointTest.andB (0 ms) 23: [ RUN ] Simd4FloatingpointTest.orB 23: [ OK ] Simd4FloatingpointTest.orB (0 ms) 23: [ RUN ] Simd4FloatingpointTest.anyTrue 23: [ OK ] Simd4FloatingpointTest.anyTrue (0 ms) 23: [ RUN ] Simd4FloatingpointTest.blend 23: [ OK ] Simd4FloatingpointTest.blend (0 ms) 23: [ RUN ] Simd4FloatingpointTest.reduce 23: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 23: [ RUN ] Simd4FloatingpointTest.dotProduct 23: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 23: [ RUN ] Simd4FloatingpointTest.transpose 23: [ OK ] Simd4FloatingpointTest.transpose (0 ms) 23: [----------] 32 tests from Simd4FloatingpointTest (1 ms total) 23: 23: [----------] 1 test from Simd4VectorOperationsTest 23: [ RUN ] Simd4VectorOperationsTest.norm2 23: [ OK ] Simd4VectorOperationsTest.norm2 (0 ms) 23: [----------] 1 test from Simd4VectorOperationsTest (0 ms total) 23: 23: [----------] 2 tests from Simd4MathTest 23: [ RUN ] Simd4MathTest.invsqrt 23: [ OK ] Simd4MathTest.invsqrt (1 ms) 23: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy 23: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) 23: [----------] 2 tests from Simd4MathTest (1 ms total) 23: 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (1 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (1 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 277 tests from 22 test cases ran. (71 ms total) 23: [ PASSED ] 277 tests. 23/24 Test #23: SimdUnitTests .................... Passed 0.10 sec test 24 Start 24: CompatibilityHelpersTests 24: Test command: /<>/build/mpich/bin/compat-test "--gtest_output=xml:/<>/build/mpich/Testing/Temporary/CompatibilityHelpersTests.xml" 24: Test timeout computed to be: 30 24: [==========] Running 1 test from 1 test case. 24: [----------] Global test environment set-up. 24: [----------] 1 test from CompatibilityHelper 24: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 24: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 24: [----------] 1 test from CompatibilityHelper (0 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 1 test from 1 test case ran. (0 ms total) 24: [ PASSED ] 1 test. 24/24 Test #24: CompatibilityHelpersTests ........ Passed 0.02 sec 100% tests passed, 0 tests failed out of 24 Label Time Summary: GTest = 1.60 sec*proc (24 tests) MpiTest = 0.10 sec*proc (2 tests) UnitTest = 1.60 sec*proc (24 tests) Total Test time (real) = 1.64 sec /usr/bin/make -j4 -C build/mpich-dp tests make[1]: Entering directory '/<>/build/mpich-dp' /usr/bin/cmake -H/<> -B/<>/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/mpich-dp' /usr/bin/cmake -H/<> -B/<>/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles 98 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/mpich-dp /<>/build/mpich-dp/src/external/gmock-1.7.0 /<>/build/mpich-dp/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/onlinehelp/tests /<>/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/mdrunutility/tests /<>/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/mpich-dp' Scanning dependencies of target gmock Scanning dependencies of target mdrunutility-test-shared [ 3%] Built target tng_io_obj make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build Scanning dependencies of target onlinehelp-test-shared /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/mpich-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/mpich-dp' [ 80%] Built target libgromacs cd /<>/build/mpich-dp/src/external/gmock-1.7.0 && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/mpich-dp' [ 81%] Built target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/mpich-dp' [ 81%] Built target onlinehelp-test-shared cd /<>/build/mpich-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/mpich-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/mpich-dp' [ 81%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/mpich-dp /<>/build/mpich-dp/src/testutils /<>/build/mpich-dp/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/mpich-dp/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/mpich-dp/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/mpich-dp' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/compat/tests /<>/build/mpich-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/testutils/tests /<>/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/testutils/tests /<>/build/mpich-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/mdlib/tests /<>/build/mpich-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/applied-forces/tests /<>/build/mpich-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/listed-forces/tests /<>/build/mpich-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/commandline/tests /<>/build/mpich-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/mpich-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/ewald/tests /<>/build/mpich-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/mpich-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/fft/tests /<>/build/mpich-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/gpu_utils/tests /<>/build/mpich-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/mpich-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 86%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/hardware/tests /<>/build/mpich-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 86%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/math/tests /<>/build/mpich-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 87%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/mdrunutility/tests /<>/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 87%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/mdrunutility/tests /<>/build/mpich-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/mpich-dp/src/gromacs/math/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 87%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/onlinehelp/tests /<>/build/mpich-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 88%] Built target ewald-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/options/tests /<>/build/mpich-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/mpich-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 89%] Built target commandline-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/random/tests /<>/build/mpich-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 89%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/tables/tests /<>/build/mpich-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 90%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/taskassignment/tests /<>/build/mpich-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/mpich-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 90%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/utility/tests /<>/build/mpich-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 91%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/fileio/tests /<>/build/mpich-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 92%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/pulling/tests /<>/build/mpich-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 92%] Built target pull-test cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/awh/tests /<>/build/mpich-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/mpich-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 94%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs/simd/tests /<>/build/mpich-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [ 94%] Built target awh-test cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/mpich-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 95%] Built target options-test cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/mpich-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp make[4]: Leaving directory '/<>/build/mpich-dp' [ 97%] Built target utility-test cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.mpich -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/mpich-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/mpich-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/mpich-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.mpich -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.mpich.a ../../../../lib/libgmock.a -lpthread -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm -lpthread make[4]: Leaving directory '/<>/build/mpich-dp' [100%] Built target simd-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/mpich-dp /<>/build/mpich-dp /<>/build/mpich-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/mpich-dp' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/mpich-dp' [100%] Built target tests make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles 0 make[2]: Leaving directory '/<>/build/mpich-dp' make[1]: Leaving directory '/<>/build/mpich-dp' (cd build/mpich-dp ; LD_LIBRARY_PATH=/<>/build/mpich-dp/lib ctest -V) UpdateCTestConfiguration from :/<>/build/mpich-dp/DartConfiguration.tcl Parse Config file:/<>/build/mpich-dp/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/mpich-dp/DartConfiguration.tcl Parse Config file:/<>/build/mpich-dp/DartConfiguration.tcl Test project /<>/build/mpich-dp Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/mpich-dp/bin/testutils-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (6 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) 1: [----------] 34 tests from ReferenceDataTest (13 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (1 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (0 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (1 ms) 1: [----------] 4 tests from XvgTests (3 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (22 ms total) 1: [ PASSED ] 59 tests. 1/24 Test #1: TestUtilsUnitTests ............... Passed 0.04 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.mpich "-np" "2" "/<>/build/mpich-dp/bin/testutils-mpi-test" "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) 2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. 2/24 Test #2: TestUtilsMpiUnitTests ............ Passed 0.03 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/mpich-dp/bin/mdlib-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (1 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (1 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/24 Test #3: MdlibUnitTest .................... Passed 0.03 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/mpich-dp/bin/applied-forces-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/24 Test #4: AppliedForcesUnitTest ............ Passed 0.02 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/mpich-dp/bin/listed-forces-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (1 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (1 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/24 Test #5: ListedForcesTest ................. Passed 0.02 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/mpich-dp/bin/commandline-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (12 ms total) 6: [ PASSED ] 57 tests. 6/24 Test #6: CommandLineUnitTests ............. Passed 0.03 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/mpich-dp/bin/ewald-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (3 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (5 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (2 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (51 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (104 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (31 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (12 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (19 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (30 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (27 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (4 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (31 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (3 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (77 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (395 ms total) 7: [ PASSED ] 257 tests. 7/24 Test #7: EwaldUnitTests ................... Passed 0.46 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/mpich-dp/bin/fft-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (5 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (8 ms) 8: [----------] 2 tests from ManyFFTTest (14 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 8: [----------] 1 test from FFTTest (3 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (4 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (18 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (38 ms total) 8: [ PASSED ] 14 tests. 8/24 Test #8: FFTUnitTests ..................... Passed 0.06 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/mpich-dp/bin/gpu_utils-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: [==========] Running 30 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 7 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/0.ChangingPinningPolicyRequiresCuda (4 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/0 (5 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/1, where TypeParam = double 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/1.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/1 (3 ms total) 9: 9: [----------] 7 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda 9: 9: [WARNING] /<>/src/external/gmock-1.7.0/gtest/src/gtest-death-test.cc:825:: Death tests use fork(), which is unsafe particularly in a threaded context. For this test, Google Test couldn't detect the number of threads. 9: [ OK ] HostAllocatorTest/2.ChangingPinningPolicyRequiresCuda (3 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 7 tests from HostAllocatorTest/2 (3 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (1 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 30 tests from 6 test cases ran. (13 ms total) 9: [ PASSED ] 30 tests. 9/24 Test #9: GpuUtilsUnitTests ................ Passed 0.03 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/mpich-dp/bin/hardware-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (7 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (6 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (7 ms) 10: [----------] 4 tests from HardwareTopologyTest (27 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (27 ms total) 10: [ PASSED ] 4 tests. 10/24 Test #10: HardwareUnitTests ................ Passed 0.05 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/mpich-dp/bin/math-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (0 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (1 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (1 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (1 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) 11: [----------] 21 tests from FunctionTest (4 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (1 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (5 ms total) 11: [ PASSED ] 31 tests. 11/24 Test #11: MathUnitTests .................... Passed 0.02 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/mpich-dp/bin/mdrunutility-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) 12: [----------] 17 tests from ThreadAffinityTest (6 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (6 ms total) 12: [ PASSED ] 17 tests. 12/24 Test #12: MdrunUtilityUnitTests ............ Passed 0.02 sec test 13 Start 13: MdrunUtilityMpiUnitTests 13: Test command: /usr/bin/mpiexec.mpich "-np" "4" "/<>/build/mpich-dp/bin/mdrunutility-mpi-test" "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/MdrunUtilityMpiUnitTests.xml" 13: Test timeout computed to be: 30 13: [==========] Running 13 tests from 2 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from ThreadAffinityMultiRankTest 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWholeNode 13: [ OK ] ThreadAffinityMultiRankTest.PinsWholeNode (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride 13: [ OK ] ThreadAffinityMultiRankTest.PinsWithOffsetAndStride (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.PinsTwoNodes 13: [ OK ] ThreadAffinityMultiRankTest.PinsTwoNodes (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled 13: [ OK ] ThreadAffinityMultiRankTest.DoesNothingWhenDisabled (0 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithAuto (1 ms) 13: [ RUN ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce 13: [ OK ] ThreadAffinityMultiRankTest.HandlesTooManyThreadsWithForce (1 ms) 13: [----------] 6 tests from ThreadAffinityMultiRankTest (9 ms total) 13: 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesUnknownHardwareOnNonMaster (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.PinsAutomaticallyOnNonMasterOnly (1 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidOffsetOnNonMasterOnly (2 ms) 13: [ RUN ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly 13: [ OK ] ThreadAffinityHeterogeneousNodesTest.HandlesInvalidStrideOnNonMasterOnly (1 ms) 13: [----------] 7 tests from ThreadAffinityHeterogeneousNodesTest (11 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 13 tests from 2 test cases ran. (22 ms total) 13: [ PASSED ] 13 tests. 13/24 Test #13: MdrunUtilityMpiUnitTests ......... Passed 0.07 sec test 14 Start 14: OnlineHelpUnitTests 14: Test command: /<>/build/mpich-dp/bin/onlinehelp-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 14: Test timeout computed to be: 30 14: [==========] Running 22 tests from 4 test cases. 14: [----------] Global test environment set-up. 14: [----------] 6 tests from TextTableFormatterTest 14: [ RUN ] TextTableFormatterTest.HandlesBasicCase 14: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesIndentation 14: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 14: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 14: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 14: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 14: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 14: [----------] 6 tests from TextTableFormatterTest (1 ms total) 14: 14: [----------] 3 tests from HelpManagerTest 14: [ RUN ] HelpManagerTest.HandlesRootTopic 14: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 14: [ RUN ] HelpManagerTest.HandlesSubTopics 14: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 14: [ RUN ] HelpManagerTest.HandlesInvalidTopics 14: [ OK ] HelpManagerTest.HandlesInvalidTopics (0 ms) 14: [----------] 3 tests from HelpManagerTest (1 ms total) 14: 14: [----------] 2 tests from HelpTopicFormattingTest 14: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 14: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 14: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 14: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 14: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 14: 14: [----------] 11 tests from HelpWriterContextTest 14: [ RUN ] HelpWriterContextTest.FormatsParagraphs 14: [ OK ] HelpWriterContextTest.FormatsParagraphs (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 14: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 14: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 14: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralText 14: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 14: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (1 ms) 14: [ RUN ] HelpWriterContextTest.FormatsBulletList 14: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 14: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 14: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsGridTable 14: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 14: [ RUN ] HelpWriterContextTest.FormatsTitles 14: [ OK ] HelpWriterContextTest.FormatsTitles (1 ms) 14: [----------] 11 tests from HelpWriterContextTest (3 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 22 tests from 4 test cases ran. (5 ms total) 14: [ PASSED ] 22 tests. 14/24 Test #14: OnlineHelpUnitTests .............. Passed 0.02 sec test 15 Start 15: OptionsUnitTests 15: Test command: /<>/build/mpich-dp/bin/options-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/OptionsUnitTests.xml" 15: Test timeout computed to be: 30 15: [==========] Running 110 tests from 18 test cases. 15: [----------] Global test environment set-up. 15: [----------] 5 tests from AbstractOptionStorageTest 15: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 15: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 15: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (1 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 15: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 15: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 15: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 15: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 15: 15: [----------] 8 tests from FileNameOptionTest 15: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 15: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 15: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 15: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 15: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 15: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 15: [----------] 8 tests from FileNameOptionTest (1 ms total) 15: 15: [----------] 15 tests from FileNameOptionManagerTest 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 15: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 15: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 15: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 15: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 15: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 15: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 15: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 15: 15: [----------] 1 test from OptionsTest 15: [ RUN ] OptionsTest.FailsOnNonsafeStorage 15: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 15: [----------] 1 test from OptionsTest (0 ms total) 15: 15: [----------] 9 tests from OptionsAssignerTest 15: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 15: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 15: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (1 ms) 15: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 15: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMissingValue 15: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesExtraValue 15: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesGroups 15: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesSections 15: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 15: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 15: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 15: [----------] 9 tests from OptionsAssignerTest (1 ms total) 15: 15: [----------] 4 tests from OptionsAssignerBooleanTest 15: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 15: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 15: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 15: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 15: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 15: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 15: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 15: 15: [----------] 13 tests from OptionsAssignerIntegerTest 15: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 15: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 15: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 15: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 15: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 15: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 15: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 15: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 15: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 15: 15: [----------] 5 tests from OptionsAssignerDoubleTest 15: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 15: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 15: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 15: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 15: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 15: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) 15: 15: [----------] 9 tests from OptionsAssignerStringTest 15: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 15: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 15: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 15: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 15: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 15: 15: [----------] 6 tests from OptionsAssignerEnumTest 15: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 15: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 15: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 15: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 15: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 15: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 15: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 15: 15: [----------] 8 tests from RepeatingOptionSectionTest 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 15: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 15: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (1 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 15: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 15: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 15: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 15: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 15: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 15: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 15: 15: [----------] 1 test from TimeUnitManagerTest 15: [ RUN ] TimeUnitManagerTest.BasicOperations 15: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 15: [----------] 1 test from TimeUnitManagerTest (0 ms total) 15: 15: [----------] 4 tests from TimeUnitBehaviorTest 15: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 15: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 15: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 15: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 15: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 15: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 15: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 15: 15: [----------] 2 tests from TreeValueSupportAssignTest 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 15: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 15: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 15: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 15: 15: [----------] 1 test from TreeValueSupportAssignErrorTest 15: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 15: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (1 ms) 15: [----------] 1 test from TreeValueSupportAssignErrorTest (1 ms total) 15: 15: [----------] 5 tests from TreeValueSupportCheckTest 15: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 15: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 15: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 15: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 15: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 15: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 15: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 15: 15: [----------] 6 tests from TreeValueSupportAdjustTest 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 15: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (1 ms) 15: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 15: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 15: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 15: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 15: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 15: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 15: 15: [----------] 8 tests from TreeValueSupportTest 15: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 15: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 15: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsInt64Option 15: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsStringOption 15: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsFloatOption 15: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 15: [ OK ] TreeValueSupportTest.SupportsDoubleOption (1 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 15: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 15: [ RUN ] TreeValueSupportTest.SupportsEnumOption 15: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 15: [----------] 8 tests from TreeValueSupportTest (2 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 110 tests from 18 test cases ran. (11 ms total) 15: [ PASSED ] 110 tests. 15/24 Test #15: OptionsUnitTests ................. Passed 0.03 sec test 16 Start 16: RandomUnitTests 16: Test command: /<>/build/mpich-dp/bin/random-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/RandomUnitTests.xml" 16: Test timeout computed to be: 30 16: [==========] Running 44 tests from 10 test cases. 16: [----------] Global test environment set-up. 16: [----------] 4 tests from ExponentialDistributionTest 16: [ RUN ] ExponentialDistributionTest.Output 16: [ OK ] ExponentialDistributionTest.Output (1 ms) 16: [ RUN ] ExponentialDistributionTest.Logical 16: [ OK ] ExponentialDistributionTest.Logical (0 ms) 16: [ RUN ] ExponentialDistributionTest.Reset 16: [ OK ] ExponentialDistributionTest.Reset (0 ms) 16: [ RUN ] ExponentialDistributionTest.AltParam 16: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from ExponentialDistributionTest (1 ms total) 16: 16: [----------] 4 tests from GammaDistributionTest 16: [ RUN ] GammaDistributionTest.Output 16: [ OK ] GammaDistributionTest.Output (0 ms) 16: [ RUN ] GammaDistributionTest.Logical 16: [ OK ] GammaDistributionTest.Logical (0 ms) 16: [ RUN ] GammaDistributionTest.Reset 16: [ OK ] GammaDistributionTest.Reset (0 ms) 16: [ RUN ] GammaDistributionTest.AltParam 16: [ OK ] GammaDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from GammaDistributionTest (0 ms total) 16: 16: [----------] 4 tests from NormalDistributionTest 16: [ RUN ] NormalDistributionTest.Output 16: [ OK ] NormalDistributionTest.Output (0 ms) 16: [ RUN ] NormalDistributionTest.Logical 16: [ OK ] NormalDistributionTest.Logical (0 ms) 16: [ RUN ] NormalDistributionTest.Reset 16: [ OK ] NormalDistributionTest.Reset (0 ms) 16: [ RUN ] NormalDistributionTest.AltParam 16: [ OK ] NormalDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from NormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from SeedTest 16: [ RUN ] SeedTest.makeRandomSeed 16: [ OK ] SeedTest.makeRandomSeed (1 ms) 16: [----------] 1 test from SeedTest (1 ms total) 16: 16: [----------] 6 tests from TabulatedNormalDistributionTest 16: [ RUN ] TabulatedNormalDistributionTest.Output14 16: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Output16 16: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 16: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Logical 16: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.Reset 16: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 16: [ RUN ] TabulatedNormalDistributionTest.AltParam 16: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 16: [----------] 6 tests from TabulatedNormalDistributionTest (0 ms total) 16: 16: [----------] 1 test from TabulatedNormalDistributionTableTest 16: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 16: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 16: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 16: 16: [----------] 6 tests from ThreeFry2x64Test 16: [ RUN ] ThreeFry2x64Test.Logical 16: [ OK ] ThreeFry2x64Test.Logical (0 ms) 16: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 16: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 16: [ RUN ] ThreeFry2x64Test.Reseed 16: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 16: [ RUN ] ThreeFry2x64Test.Discard 16: [ OK ] ThreeFry2x64Test.Discard (0 ms) 16: [ RUN ] ThreeFry2x64Test.InvalidCounter 16: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 16: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 16: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 16: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 16: 16: [----------] 4 tests from UniformIntDistributionTest 16: [ RUN ] UniformIntDistributionTest.Output 16: [ OK ] UniformIntDistributionTest.Output (0 ms) 16: [ RUN ] UniformIntDistributionTest.Logical 16: [ OK ] UniformIntDistributionTest.Logical (0 ms) 16: [ RUN ] UniformIntDistributionTest.Reset 16: [ OK ] UniformIntDistributionTest.Reset (0 ms) 16: [ RUN ] UniformIntDistributionTest.AltParam 16: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 16: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 16: 16: [----------] 5 tests from UniformRealDistributionTest 16: [ RUN ] UniformRealDistributionTest.GenerateCanonical 16: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Output 16: [ OK ] UniformRealDistributionTest.Output (0 ms) 16: [ RUN ] UniformRealDistributionTest.Logical 16: [ OK ] UniformRealDistributionTest.Logical (0 ms) 16: [ RUN ] UniformRealDistributionTest.Reset 16: [ OK ] UniformRealDistributionTest.Reset (0 ms) 16: [ RUN ] UniformRealDistributionTest.AltParam 16: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 16: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 16: 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 16: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 16: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 16: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 44 tests from 10 test cases ran. (8 ms total) 16: [ PASSED ] 44 tests. 16/24 Test #16: RandomUnitTests .................. Passed 0.04 sec test 17 Start 17: TableUnitTests 17: Test command: /<>/build/mpich-dp/bin/table-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/TableUnitTests.xml" 17: Test timeout computed to be: 30 17: [==========] Running 20 tests from 2 test cases. 17: [----------] Global test environment set-up. 17: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 17: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/0.Sinc 17: [ OK ] SplineTableTest/0.Sinc (2 ms) 17: [ RUN ] SplineTableTest/0.LJ12 17: [ OK ] SplineTableTest/0.LJ12 (37 ms) 17: [ RUN ] SplineTableTest/0.PmeCorrection 17: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 17: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 17: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/0.TwoFunctions 17: [ OK ] SplineTableTest/0.TwoFunctions (71 ms) 17: [ RUN ] SplineTableTest/0.ThreeFunctions 17: [ OK ] SplineTableTest/0.ThreeFunctions (75 ms) 17: [ RUN ] SplineTableTest/0.Simd 17: [ OK ] SplineTableTest/0.Simd (18 ms) 17: [ RUN ] SplineTableTest/0.SimdTwoFunctions 17: [ OK ] SplineTableTest/0.SimdTwoFunctions (67 ms) 17: [----------] 10 tests from SplineTableTest/0 (279 ms total) 17: 17: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 17: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 17: [ RUN ] SplineTableTest/1.Sinc 17: [ OK ] SplineTableTest/1.Sinc (3 ms) 17: [ RUN ] SplineTableTest/1.LJ12 17: [ OK ] SplineTableTest/1.LJ12 (88 ms) 17: [ RUN ] SplineTableTest/1.PmeCorrection 17: [ OK ] SplineTableTest/1.PmeCorrection (2 ms) 17: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 17: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 17: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 17: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 17: [ RUN ] SplineTableTest/1.TwoFunctions 17: [ OK ] SplineTableTest/1.TwoFunctions (172 ms) 17: [ RUN ] SplineTableTest/1.ThreeFunctions 17: [ OK ] SplineTableTest/1.ThreeFunctions (184 ms) 17: [ RUN ] SplineTableTest/1.Simd 17: [ OK ] SplineTableTest/1.Simd (41 ms) 17: [ RUN ] SplineTableTest/1.SimdTwoFunctions 17: [ OK ] SplineTableTest/1.SimdTwoFunctions (167 ms) 17: [----------] 10 tests from SplineTableTest/1 (665 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 20 tests from 2 test cases ran. (944 ms total) 17: [ PASSED ] 20 tests. 17/24 Test #17: TableUnitTests ................... Passed 0.97 sec test 18 Start 18: TaskAssignmentUnitTests 18: Test command: /<>/build/mpich-dp/bin/taskassignment-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 18: Test timeout computed to be: 30 18: [==========] Running 3 tests from 1 test case. 18: [----------] Global test environment set-up. 18: [----------] 3 tests from GpuIdStringHandlingTest 18: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 18: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 18: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 18: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 18: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) 18: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 3 tests from 1 test case ran. (1 ms total) 18: [ PASSED ] 3 tests. 18/24 Test #18: TaskAssignmentUnitTests .......... Passed 0.02 sec test 19 Start 19: UtilityUnitTests 19: Test command: /<>/build/mpich-dp/bin/utility-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/UtilityUnitTests.xml" 19: Test timeout computed to be: 30 19: [==========] Running 307 tests from 49 test cases. 19: [----------] Global test environment set-up. 19: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/0 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/1 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/2 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 19: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/3 (0 ms total) 19: 19: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/4 (1 ms total) 19: 19: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 19: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 19: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (0 ms) 19: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 19: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (1 ms) 19: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 19: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 19: [----------] 4 tests from AllocatorTest/5 (1 ms total) 19: 19: [----------] 1 test from EmptyArrayRefTest 19: [ RUN ] EmptyArrayRefTest.IsEmpty 19: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyArrayRefTest (0 ms total) 19: 19: [----------] 1 test from EmptyConstArrayRefTest 19: [ RUN ] EmptyConstArrayRefTest.IsEmpty 19: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 19: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/3 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/4 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/8 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/12 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/16 (1 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 19: 19: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 19: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 19: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 19: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 19: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 19: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 19: 19: [----------] 4 tests from KeyValueTreeSerializerTest 19: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 19: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 19: [ OK ] KeyValueTreeSerializerTest.SimpleObject (1 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 19: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 19: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 19: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 19: 19: [----------] 6 tests from TreeValueTransformTest 19: [ RUN ] TreeValueTransformTest.SimpleTransforms 19: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 19: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (1 ms) 19: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 19: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromString 19: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 19: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 19: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 19: [ RUN ] TreeValueTransformTest.ScopedTransformRules 19: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 19: [----------] 6 tests from TreeValueTransformTest (2 ms total) 19: 19: [----------] 1 test from TreeValueTransformErrorTest 19: [ RUN ] TreeValueTransformErrorTest.ConversionError 19: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 19: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 19: 19: [----------] 5 tests from LoggerTest 19: [ RUN ] LoggerTest.EmptyLoggerWorks 19: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToStream 19: [ OK ] LoggerTest.LogsToStream (0 ms) 19: [ RUN ] LoggerTest.LogsToFile 19: [ OK ] LoggerTest.LogsToFile (1 ms) 19: [ RUN ] LoggerTest.LevelFilteringWorks 19: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 19: [ RUN ] LoggerTest.LogsToMultipleStreams 19: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 19: [----------] 5 tests from LoggerTest (1 ms total) 19: 19: [----------] 4 tests from MutexBasicTest 19: [ RUN ] MutexBasicTest.CanBeMade 19: [ OK ] MutexBasicTest.CanBeMade (0 ms) 19: [ RUN ] MutexBasicTest.CanBeLocked 19: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeTryLocked 19: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 19: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 19: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 19: [----------] 4 tests from MutexBasicTest (0 ms total) 19: 19: [----------] 3 tests from MutexTaskTest 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (18 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 19: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 19: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 19: [----------] 3 tests from MutexTaskTest (18 ms total) 19: 19: [----------] 2 tests from PathTest 19: [ RUN ] PathTest.StripSourcePrefixWorks 19: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 19: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 19: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (1 ms) 19: [----------] 2 tests from PathTest (1 ms total) 19: 19: [----------] 7 tests from StringUtilityTest 19: [ RUN ] StringUtilityTest.StartsWith 19: [ OK ] StringUtilityTest.StartsWith (0 ms) 19: [ RUN ] StringUtilityTest.EndsWith 19: [ OK ] StringUtilityTest.EndsWith (0 ms) 19: [ RUN ] StringUtilityTest.StripSuffixIfPresent 19: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 19: [ RUN ] StringUtilityTest.StripString 19: [ OK ] StringUtilityTest.StripString (0 ms) 19: [ RUN ] StringUtilityTest.SplitString 19: [ OK ] StringUtilityTest.SplitString (0 ms) 19: [ RUN ] StringUtilityTest.SplitDelimitedString 19: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 19: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 19: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 19: [----------] 7 tests from StringUtilityTest (0 ms total) 19: 19: [----------] 2 tests from FormatStringTest 19: [ RUN ] FormatStringTest.HandlesBasicFormatting 19: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 19: [ RUN ] FormatStringTest.HandlesLongStrings 19: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 19: [----------] 2 tests from FormatStringTest (0 ms total) 19: 19: [----------] 1 test from StringFormatterTest 19: [ RUN ] StringFormatterTest.HandlesBasicFormatting 19: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 19: [----------] 1 test from StringFormatterTest (1 ms total) 19: 19: [----------] 1 test from formatAndJoinTest 19: [ RUN ] formatAndJoinTest.Works 19: [ OK ] formatAndJoinTest.Works (0 ms) 19: [----------] 1 test from formatAndJoinTest (0 ms total) 19: 19: [----------] 1 test from JoinStringsTest 19: [ RUN ] JoinStringsTest.Works 19: [ OK ] JoinStringsTest.Works (0 ms) 19: [----------] 1 test from JoinStringsTest (0 ms total) 19: 19: [----------] 6 tests from ReplaceAllTest 19: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 19: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesNoMatches 19: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 19: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 19: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 19: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 19: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 19: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 19: [----------] 6 tests from ReplaceAllTest (0 ms total) 19: 19: [----------] 10 tests from TextLineWrapperTest 19: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 19: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 19: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 19: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectly 19: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndent 19: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 19: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (1 ms) 19: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 19: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 19: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 19: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 19: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 19: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 19: [----------] 10 tests from TextLineWrapperTest (1 ms total) 19: 19: [----------] 6 tests from TextWriterTest 19: [ RUN ] TextWriterTest.WritesLines 19: [ OK ] TextWriterTest.WritesLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInParts 19: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 19: [ RUN ] TextWriterTest.WritesWrappedLines 19: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 19: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 19: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 19: [ RUN ] TextWriterTest.TracksNewlines 19: [ OK ] TextWriterTest.TracksNewlines (1 ms) 19: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 19: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 19: [----------] 6 tests from TextWriterTest (1 ms total) 19: 19: [----------] 1 test from TypeTraitsTest 19: [ RUN ] TypeTraitsTest.IsIntegralConstant 19: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 19: [----------] 1 test from TypeTraitsTest (0 ms total) 19: 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 19: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 19: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 19: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 19: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 19: 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 19: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 19: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 19: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 19: 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 19: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 19: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 19: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (2 ms total) 19: 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 19: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 19: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 19: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 307 tests from 49 test cases ran. (36 ms total) 19: [ PASSED ] 307 tests. 19/24 Test #19: UtilityUnitTests ................. Passed 0.07 sec test 20 Start 20: FileIOTests 20: Test command: /<>/build/mpich-dp/bin/fileio-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/FileIOTests.xml" 20: Test timeout computed to be: 30 20: [==========] Running 15 tests from 3 test cases. 20: [----------] Global test environment set-up. 20: [----------] 9 tests from ReadTest 20: [ RUN ] ReadTest.get_eint_ReadsInteger 20: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_eint64_ReadsInteger 20: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side '0.8' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 20: [ RUN ] ReadTest.get_eint64_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not an 20: integer value 20: 20: 20: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsInteger 20: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 20: [ RUN ] ReadTest.get_ereal_ReadsFloat 20: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 20: [ RUN ] ReadTest.get_ereal_WarnsAboutString 20: 20: ERROR 1 [file unknown, line 0]: 20: Right hand side 'hello' for parameter 'test' in parameter file is not a 20: real value 20: 20: 20: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 20: [----------] 9 tests from ReadTest (0 ms total) 20: 20: [----------] 2 tests from TngTest 20: [ RUN ] TngTest.CanOpenTngFile 20: [ OK ] TngTest.CanOpenTngFile (0 ms) 20: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 20: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 20: [----------] 2 tests from TngTest (0 ms total) 20: 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (3 ms) 20: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 20: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (1 ms) 20: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 15 tests from 3 test cases ran. (7 ms total) 20: [ PASSED ] 15 tests. 20/24 Test #20: FileIOTests ...................... Passed 0.03 sec test 21 Start 21: PullTest 21: Test command: /<>/build/mpich-dp/bin/pull-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/PullTest.xml" 21: Test timeout computed to be: 30 21: [==========] Running 5 tests from 1 test case. 21: [----------] Global test environment set-up. 21: [----------] 5 tests from PullTest 21: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 21: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 21: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 21: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 21: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 21: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 21: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 21: [----------] 5 tests from PullTest (0 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 5 tests from 1 test case ran. (1 ms total) 21: [ PASSED ] 5 tests. 21/24 Test #21: PullTest ......................... Passed 0.02 sec test 22 Start 22: AwhTest 22: Test command: /<>/build/mpich-dp/bin/awh-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/AwhTest.xml" 22: Test timeout computed to be: 30 22: [==========] Running 12 tests from 4 test cases. 22: [----------] Global test environment set-up. 22: [----------] 1 test from BiasTest 22: [ RUN ] BiasTest.DetectsCovering 22: [ OK ] BiasTest.DetectsCovering (1 ms) 22: [----------] 1 test from BiasTest (1 ms total) 22: 22: [----------] 1 test from gridTest 22: [ RUN ] gridTest.neighborhood 22: [ OK ] gridTest.neighborhood (1 ms) 22: [----------] 1 test from gridTest (1 ms total) 22: 22: [----------] 8 tests from WithParameters/BiasTest 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (0 ms) 22: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 22: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (1 ms) 22: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 22: 22: [----------] 2 tests from WithParameters/BiasStateTest 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (0 ms) 22: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 22: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (1 ms) 22: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 12 tests from 4 test cases ran. (8 ms total) 22: [ PASSED ] 12 tests. 22/24 Test #22: AwhTest .......................... Passed 0.03 sec test 23 Start 23: SimdUnitTests 23: Test command: /<>/build/mpich-dp/bin/simd-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/SimdUnitTests.xml" 23: Test timeout computed to be: 30 23: [==========] Running 236 tests from 19 test cases. 23: [----------] Global test environment set-up. 23: [----------] 6 tests from SimdBootstrapTest 23: [ RUN ] SimdBootstrapTest.loadStore 23: [ OK ] SimdBootstrapTest.loadStore (0 ms) 23: [ RUN ] SimdBootstrapTest.loadU 23: [ OK ] SimdBootstrapTest.loadU (0 ms) 23: [ RUN ] SimdBootstrapTest.storeU 23: [ OK ] SimdBootstrapTest.storeU (0 ms) 23: [ RUN ] SimdBootstrapTest.loadStoreI 23: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 23: [ RUN ] SimdBootstrapTest.loadUI 23: [ OK ] SimdBootstrapTest.loadUI (0 ms) 23: [ RUN ] SimdBootstrapTest.storeUI 23: [ OK ] SimdBootstrapTest.storeUI (0 ms) 23: [----------] 6 tests from SimdBootstrapTest (0 ms total) 23: 23: [----------] 1 test from SimdTest 23: [ RUN ] SimdTest.GmxAligned 23: [ OK ] SimdTest.GmxAligned (0 ms) 23: [----------] 1 test from SimdTest (0 ms total) 23: 23: [----------] 42 tests from SimdFloatingpointTest 23: [ RUN ] SimdFloatingpointTest.setZero 23: [ OK ] SimdFloatingpointTest.setZero (0 ms) 23: [ RUN ] SimdFloatingpointTest.set 23: [ OK ] SimdFloatingpointTest.set (0 ms) 23: [ RUN ] SimdFloatingpointTest.add 23: [ OK ] SimdFloatingpointTest.add (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskAdd 23: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 23: [ RUN ] SimdFloatingpointTest.sub 23: [ OK ] SimdFloatingpointTest.sub (0 ms) 23: [ RUN ] SimdFloatingpointTest.mul 23: [ OK ] SimdFloatingpointTest.mul (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzMul 23: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 23: [ RUN ] SimdFloatingpointTest.fma 23: [ OK ] SimdFloatingpointTest.fma (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzFma 23: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fms 23: [ OK ] SimdFloatingpointTest.fms (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnma 23: [ OK ] SimdFloatingpointTest.fnma (0 ms) 23: [ RUN ] SimdFloatingpointTest.fnms 23: [ OK ] SimdFloatingpointTest.fnms (0 ms) 23: [ RUN ] SimdFloatingpointTest.abs 23: [ OK ] SimdFloatingpointTest.abs (0 ms) 23: [ RUN ] SimdFloatingpointTest.neg 23: [ OK ] SimdFloatingpointTest.neg (0 ms) 23: [ RUN ] SimdFloatingpointTest.and 23: [ OK ] SimdFloatingpointTest.and (0 ms) 23: [ RUN ] SimdFloatingpointTest.or 23: [ OK ] SimdFloatingpointTest.or (0 ms) 23: [ RUN ] SimdFloatingpointTest.xor 23: [ OK ] SimdFloatingpointTest.xor (0 ms) 23: [ RUN ] SimdFloatingpointTest.andNot 23: [ OK ] SimdFloatingpointTest.andNot (0 ms) 23: [ RUN ] SimdFloatingpointTest.max 23: [ OK ] SimdFloatingpointTest.max (0 ms) 23: [ RUN ] SimdFloatingpointTest.min 23: [ OK ] SimdFloatingpointTest.min (0 ms) 23: [ RUN ] SimdFloatingpointTest.round 23: [ OK ] SimdFloatingpointTest.round (0 ms) 23: [ RUN ] SimdFloatingpointTest.roundMode 23: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 23: [ RUN ] SimdFloatingpointTest.trunc 23: [ OK ] SimdFloatingpointTest.trunc (0 ms) 23: [ RUN ] SimdFloatingpointTest.frexp 23: [ OK ] SimdFloatingpointTest.frexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.ldexp 23: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 23: [ RUN ] SimdFloatingpointTest.rsqrt 23: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRsqrt 23: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 23: [ RUN ] SimdFloatingpointTest.rcp 23: [ OK ] SimdFloatingpointTest.rcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.maskzRcp 23: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 23: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.selectByNotMask 23: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpNe 23: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLe 23: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 23: [ RUN ] SimdFloatingpointTest.cmpLt 23: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 23: [ RUN ] SimdFloatingpointTest.testBits 23: [ OK ] SimdFloatingpointTest.testBits (0 ms) 23: [ RUN ] SimdFloatingpointTest.andB 23: [ OK ] SimdFloatingpointTest.andB (0 ms) 23: [ RUN ] SimdFloatingpointTest.orB 23: [ OK ] SimdFloatingpointTest.orB (0 ms) 23: [ RUN ] SimdFloatingpointTest.anyTrueB 23: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 23: [ RUN ] SimdFloatingpointTest.blend 23: [ OK ] SimdFloatingpointTest.blend (0 ms) 23: [ RUN ] SimdFloatingpointTest.reduce 23: [ OK ] SimdFloatingpointTest.reduce (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 23: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 23: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 23: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 23: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 23: 23: [----------] 13 tests from SimdFloatingpointUtilTest 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 23: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (1 ms) 23: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 23: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 23: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 23: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 23: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 23: [----------] 13 tests from SimdFloatingpointUtilTest (1 ms total) 23: 23: [----------] 3 tests from SimdVectorOperationsTest 23: [ RUN ] SimdVectorOperationsTest.iprod 23: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 23: [ RUN ] SimdVectorOperationsTest.norm2 23: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 23: [ RUN ] SimdVectorOperationsTest.cprod 23: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 23: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 23: 23: [----------] 45 tests from SimdMathTest 23: [ RUN ] SimdMathTest.copysign 23: [ OK ] SimdMathTest.copysign (0 ms) 23: [ RUN ] SimdMathTest.invsqrt 23: [ OK ] SimdMathTest.invsqrt (1 ms) 23: [ RUN ] SimdMathTest.maskzInvsqrt 23: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdMathTest.invsqrtPair 23: [ OK ] SimdMathTest.invsqrtPair (1 ms) 23: [ RUN ] SimdMathTest.sqrt 23: [ OK ] SimdMathTest.sqrt (2 ms) 23: [ RUN ] SimdMathTest.sqrtUnsafe 23: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 23: [ RUN ] SimdMathTest.inv 23: [ OK ] SimdMathTest.inv (1 ms) 23: [ RUN ] SimdMathTest.maskzInv 23: [ OK ] SimdMathTest.maskzInv (0 ms) 23: [ RUN ] SimdMathTest.log 23: [ OK ] SimdMathTest.log (1 ms) 23: [ RUN ] SimdMathTest.exp2 23: [ OK ] SimdMathTest.exp2 (3 ms) 23: [ RUN ] SimdMathTest.exp2Unsafe 23: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 23: [ RUN ] SimdMathTest.exp 23: [ OK ] SimdMathTest.exp (5 ms) 23: [ RUN ] SimdMathTest.expUnsafe 23: [ OK ] SimdMathTest.expUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erf 23: [ OK ] SimdMathTest.erf (2 ms) 23: [ RUN ] SimdMathTest.erfc 23: [ OK ] SimdMathTest.erfc (3 ms) 23: [ RUN ] SimdMathTest.sin 23: [ OK ] SimdMathTest.sin (2 ms) 23: [ RUN ] SimdMathTest.cos 23: [ OK ] SimdMathTest.cos (3 ms) 23: [ RUN ] SimdMathTest.tan 23: [ OK ] SimdMathTest.tan (7 ms) 23: [ RUN ] SimdMathTest.asin 23: [ OK ] SimdMathTest.asin (1 ms) 23: [ RUN ] SimdMathTest.acos 23: [ OK ] SimdMathTest.acos (2 ms) 23: [ RUN ] SimdMathTest.atan 23: [ OK ] SimdMathTest.atan (1 ms) 23: [ RUN ] SimdMathTest.atan2 23: [ OK ] SimdMathTest.atan2 (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrection 23: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrection 23: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 23: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracy 23: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.invSingleAccuracy 23: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.logSingleAccuracy 23: [ OK ] SimdMathTest.logSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracy 23: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 23: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracy 23: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 23: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 23: [ RUN ] SimdMathTest.erfSingleAccuracy 23: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.erfcSingleAccuracy 23: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.sinSingleAccuracy 23: [ OK ] SimdMathTest.sinSingleAccuracy (3 ms) 23: [ RUN ] SimdMathTest.cosSingleAccuracy 23: [ OK ] SimdMathTest.cosSingleAccuracy (3 ms) 23: [ RUN ] SimdMathTest.tanSingleAccuracy 23: [ OK ] SimdMathTest.tanSingleAccuracy (6 ms) 23: [ RUN ] SimdMathTest.asinSingleAccuracy 23: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.acosSingleAccuracy 23: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atanSingleAccuracy 23: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 23: [ RUN ] SimdMathTest.atan2SingleAccuracy 23: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 23: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 23: [----------] 45 tests from SimdMathTest (83 ms total) 23: 23: [----------] 1 test from EmptyArrayRefTest 23: [ RUN ] EmptyArrayRefTest.IsEmpty 23: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 23: [----------] 1 test from EmptyArrayRefTest (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 23: 23: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 23: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 23: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 23: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 23: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/0.Assignment 23: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefReadWriteTest/1.Assignment 23: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 23: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/0.Basic 23: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 23: 23: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 23: [ RUN ] ArrayRefArithmeticTest/1.Basic 23: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 23: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 23: 23: [----------] 23 tests from SimdIntegerTest 23: [ RUN ] SimdIntegerTest.setZero 23: [ OK ] SimdIntegerTest.setZero (0 ms) 23: [ RUN ] SimdIntegerTest.set 23: [ OK ] SimdIntegerTest.set (0 ms) 23: [ RUN ] SimdIntegerTest.add 23: [ OK ] SimdIntegerTest.add (0 ms) 23: [ RUN ] SimdIntegerTest.sub 23: [ OK ] SimdIntegerTest.sub (0 ms) 23: [ RUN ] SimdIntegerTest.mul 23: [ OK ] SimdIntegerTest.mul (0 ms) 23: [ RUN ] SimdIntegerTest.and 23: [ OK ] SimdIntegerTest.and (0 ms) 23: [ RUN ] SimdIntegerTest.andNot 23: [ OK ] SimdIntegerTest.andNot (0 ms) 23: [ RUN ] SimdIntegerTest.or 23: [ OK ] SimdIntegerTest.or (0 ms) 23: [ RUN ] SimdIntegerTest.xor 23: [ OK ] SimdIntegerTest.xor (0 ms) 23: [ RUN ] SimdIntegerTest.extract 23: [ OK ] SimdIntegerTest.extract (0 ms) 23: [ RUN ] SimdIntegerTest.cvtR2I 23: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvttR2I 23: [ OK ] SimdIntegerTest.cvttR2I (0 ms) 23: [ RUN ] SimdIntegerTest.cvtI2R 23: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 23: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 23: [ RUN ] SimdIntegerTest.cmpLt 23: [ OK ] SimdIntegerTest.cmpLt (0 ms) 23: [ RUN ] SimdIntegerTest.testBits 23: [ OK ] SimdIntegerTest.testBits (0 ms) 23: [ RUN ] SimdIntegerTest.andB 23: [ OK ] SimdIntegerTest.andB (0 ms) 23: [ RUN ] SimdIntegerTest.orB 23: [ OK ] SimdIntegerTest.orB (0 ms) 23: [ RUN ] SimdIntegerTest.anyTrue 23: [ OK ] SimdIntegerTest.anyTrue (0 ms) 23: [ RUN ] SimdIntegerTest.blend 23: [ OK ] SimdIntegerTest.blend (0 ms) 23: [ RUN ] SimdIntegerTest.cvtB2IB 23: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 23: [ RUN ] SimdIntegerTest.cvtIB2B 23: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 23: [----------] 23 tests from SimdIntegerTest (1 ms total) 23: 23: [----------] 41 tests from SimdScalarTest 23: [ RUN ] SimdScalarTest.load 23: [ OK ] SimdScalarTest.load (0 ms) 23: [ RUN ] SimdScalarTest.loadU 23: [ OK ] SimdScalarTest.loadU (0 ms) 23: [ RUN ] SimdScalarTest.store 23: [ OK ] SimdScalarTest.store (0 ms) 23: [ RUN ] SimdScalarTest.storeU 23: [ OK ] SimdScalarTest.storeU (0 ms) 23: [ RUN ] SimdScalarTest.setZero 23: [ OK ] SimdScalarTest.setZero (0 ms) 23: [ RUN ] SimdScalarTest.andNot 23: [ OK ] SimdScalarTest.andNot (0 ms) 23: [ RUN ] SimdScalarTest.fma 23: [ OK ] SimdScalarTest.fma (0 ms) 23: [ RUN ] SimdScalarTest.fms 23: [ OK ] SimdScalarTest.fms (0 ms) 23: [ RUN ] SimdScalarTest.fnma 23: [ OK ] SimdScalarTest.fnma (0 ms) 23: [ RUN ] SimdScalarTest.fnms 23: [ OK ] SimdScalarTest.fnms (0 ms) 23: [ RUN ] SimdScalarTest.maskAdd 23: [ OK ] SimdScalarTest.maskAdd (0 ms) 23: [ RUN ] SimdScalarTest.maskzMul 23: [ OK ] SimdScalarTest.maskzMul (0 ms) 23: [ RUN ] SimdScalarTest.maskzFma 23: [ OK ] SimdScalarTest.maskzFma (0 ms) 23: [ RUN ] SimdScalarTest.abs 23: [ OK ] SimdScalarTest.abs (0 ms) 23: [ RUN ] SimdScalarTest.max 23: [ OK ] SimdScalarTest.max (0 ms) 23: [ RUN ] SimdScalarTest.min 23: [ OK ] SimdScalarTest.min (0 ms) 23: [ RUN ] SimdScalarTest.round 23: [ OK ] SimdScalarTest.round (0 ms) 23: [ RUN ] SimdScalarTest.trunc 23: [ OK ] SimdScalarTest.trunc (0 ms) 23: [ RUN ] SimdScalarTest.reduce 23: [ OK ] SimdScalarTest.reduce (0 ms) 23: [ RUN ] SimdScalarTest.testBits 23: [ OK ] SimdScalarTest.testBits (0 ms) 23: [ RUN ] SimdScalarTest.anyTrue 23: [ OK ] SimdScalarTest.anyTrue (0 ms) 23: [ RUN ] SimdScalarTest.selectByMask 23: [ OK ] SimdScalarTest.selectByMask (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMask 23: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 23: [ RUN ] SimdScalarTest.blend 23: [ OK ] SimdScalarTest.blend (0 ms) 23: [ RUN ] SimdScalarTest.cvtR2I 23: [ OK ] SimdScalarTest.cvtR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvttR2I 23: [ OK ] SimdScalarTest.cvttR2I (0 ms) 23: [ RUN ] SimdScalarTest.cvtI2R 23: [ OK ] SimdScalarTest.cvtI2R (0 ms) 23: [ RUN ] SimdScalarTest.cvtF2D 23: [ OK ] SimdScalarTest.cvtF2D (0 ms) 23: [ RUN ] SimdScalarTest.cvtD2D 23: [ OK ] SimdScalarTest.cvtD2D (0 ms) 23: [ RUN ] SimdScalarTest.loadI 23: [ OK ] SimdScalarTest.loadI (0 ms) 23: [ RUN ] SimdScalarTest.loadUI 23: [ OK ] SimdScalarTest.loadUI (0 ms) 23: [ RUN ] SimdScalarTest.storeI 23: [ OK ] SimdScalarTest.storeI (0 ms) 23: [ RUN ] SimdScalarTest.storeUI 23: [ OK ] SimdScalarTest.storeUI (0 ms) 23: [ RUN ] SimdScalarTest.andNotI 23: [ OK ] SimdScalarTest.andNotI (0 ms) 23: [ RUN ] SimdScalarTest.testBitsI 23: [ OK ] SimdScalarTest.testBitsI (0 ms) 23: [ RUN ] SimdScalarTest.selectByMaskI 23: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 23: [ RUN ] SimdScalarTest.selectByNotMaskI 23: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 23: [ RUN ] SimdScalarTest.blendI 23: [ OK ] SimdScalarTest.blendI (0 ms) 23: [ RUN ] SimdScalarTest.cvtB2IB 23: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 23: [ RUN ] SimdScalarTest.cvtIB2B 23: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 23: [ RUN ] SimdScalarTest.expandScalarsToTriplets 23: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 23: [----------] 41 tests from SimdScalarTest (1 ms total) 23: 23: [----------] 8 tests from SimdScalarUtilTest 23: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 23: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 23: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 23: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 23: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 23: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 23: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 23: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 23: 23: [----------] 37 tests from SimdScalarMathTest 23: [ RUN ] SimdScalarMathTest.copysign 23: [ OK ] SimdScalarMathTest.copysign (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPair 23: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 23: [ RUN ] SimdScalarMathTest.inv 23: [ OK ] SimdScalarMathTest.inv (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrt 23: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 23: [ RUN ] SimdScalarMathTest.log 23: [ OK ] SimdScalarMathTest.log (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2 23: [ OK ] SimdScalarMathTest.exp2 (0 ms) 23: [ RUN ] SimdScalarMathTest.exp 23: [ OK ] SimdScalarMathTest.exp (0 ms) 23: [ RUN ] SimdScalarMathTest.erf 23: [ OK ] SimdScalarMathTest.erf (0 ms) 23: [ RUN ] SimdScalarMathTest.erfc 23: [ OK ] SimdScalarMathTest.erfc (0 ms) 23: [ RUN ] SimdScalarMathTest.sincos 23: [ OK ] SimdScalarMathTest.sincos (0 ms) 23: [ RUN ] SimdScalarMathTest.sin 23: [ OK ] SimdScalarMathTest.sin (0 ms) 23: [ RUN ] SimdScalarMathTest.cos 23: [ OK ] SimdScalarMathTest.cos (0 ms) 23: [ RUN ] SimdScalarMathTest.tan 23: [ OK ] SimdScalarMathTest.tan (0 ms) 23: [ RUN ] SimdScalarMathTest.asin 23: [ OK ] SimdScalarMathTest.asin (0 ms) 23: [ RUN ] SimdScalarMathTest.acos 23: [ OK ] SimdScalarMathTest.acos (0 ms) 23: [ RUN ] SimdScalarMathTest.atan 23: [ OK ] SimdScalarMathTest.atan (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2 23: [ OK ] SimdScalarMathTest.atan2 (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrection 23: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 23: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 23: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 23: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.invSingleAccuracy 23: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 23: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.logSingleAccuracy 23: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 23: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.expSingleAccuracy 23: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 23: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 23: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 23: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 23: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 23: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 23: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 23: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 23: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 23: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 23: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 23: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 23: [----------] 37 tests from SimdScalarMathTest (1 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 236 tests from 19 test cases ran. (88 ms total) 23: [ PASSED ] 236 tests. 23/24 Test #23: SimdUnitTests .................... Passed 0.11 sec test 24 Start 24: CompatibilityHelpersTests 24: Test command: /<>/build/mpich-dp/bin/compat-test "--gtest_output=xml:/<>/build/mpich-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 24: Test timeout computed to be: 30 24: [==========] Running 1 test from 1 test case. 24: [----------] Global test environment set-up. 24: [----------] 1 test from CompatibilityHelper 24: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 24: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 24: [----------] 1 test from CompatibilityHelper (0 ms total) 24: 24: [----------] Global test environment tear-down 24: [==========] 1 test from 1 test case ran. (0 ms total) 24: [ PASSED ] 1 test. 24/24 Test #24: CompatibilityHelpersTests ........ Passed 0.02 sec 100% tests passed, 0 tests failed out of 24 Label Time Summary: GTest = 2.23 sec*proc (24 tests) MpiTest = 0.11 sec*proc (2 tests) UnitTest = 2.23 sec*proc (24 tests) Total Test time (real) = 2.29 sec touch build-mpich dh_testdir /usr/bin/make -j4 -C build/openmpi make[1]: Entering directory '/<>/build/openmpi' /usr/bin/cmake -H/<> -B/<>/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles /<>/build/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi /<>/build/openmpi/src/programs /<>/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/openmpi' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/openmpi' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/openmpi/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/openmpi/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/forcetable.cpp.o -c /<>/src/gromacs/tables/forcetable.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/quadraticsplinetable.cpp.o -c /<>/src/gromacs/tables/quadraticsplinetable.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/splineutil.cpp.o -c /<>/src/gromacs/tables/splineutil.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/cyclecounter.cpp.o -c /<>/src/gromacs/timing/cyclecounter.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/wallcycle.cpp.o -c /<>/src/gromacs/timing/wallcycle.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/timing/walltime_accounting.cpp.o -c /<>/src/gromacs/timing/walltime_accounting.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H 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/<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/baseversion.cpp.o -c /<>/src/gromacs/utility/baseversion.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/binaryinformation.cpp.o -c /<>/src/gromacs/utility/binaryinformation.cpp cd /<>/build/openmpi/src/gromacs && 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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-I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qmmm.cpp.o -c /<>/src/gromacs/mdlib/qmmm.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rbin.cpp.o -c /<>/src/gromacs/mdlib/rbin.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/rf_util.cpp.o -c /<>/src/gromacs/mdlib/rf_util.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/openmpi/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd 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CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o /usr/bin/ranlib ../../lib/libgromacs_mdrun_mpi.openmpi.a make[3]: Leaving directory '/<>/build/openmpi' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi /<>/build/openmpi/src/programs /<>/build/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= Scanning dependencies of target mdrun make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/mdrun.dir/mdrun_main.cpp.o -c /<>/src/programs/mdrun_main.cpp cd /<>/build/openmpi/src/programs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrun.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrun.dir/mdrun_main.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -o ../../bin/mdrun_mpi.openmpi ../../lib/libgromacs_mdrun_mpi.openmpi.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[3]: Leaving directory '/<>/build/openmpi' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/openmpi' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles 0 make[1]: Leaving directory '/<>/build/openmpi' /usr/bin/make -j4 -C build/openmpi-dp make[1]: Entering directory '/<>/build/openmpi-dp' /usr/bin/cmake -H/<> -B/<>/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles /<>/build/openmpi-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/programs /<>/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= Scanning dependencies of target tng_io_obj make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwlzh.c.o -c /<>/src/external/tng_io/src/compression/bwlzh.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/bwt.c.o -c /<>/src/external/tng_io/src/compression/bwt.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/coder.c.o -c /<>/src/external/tng_io/src/compression/coder.c Scanning dependencies of target mdrun_objlib make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/md.cpp.o -c /<>/src/programs/mdrun/md.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/dict.c.o -c /<>/src/external/tng_io/src/compression/dict.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/fixpoint.c.o -c /<>/src/external/tng_io/src/compression/fixpoint.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffman.c.o -c /<>/src/external/tng_io/src/compression/huffman.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/huffmem.c.o -c /<>/src/external/tng_io/src/compression/huffmem.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/lz77.c.o -c /<>/src/external/tng_io/src/compression/lz77.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/merge_sort.c.o -c /<>/src/external/tng_io/src/compression/merge_sort.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/mtf.c.o -c /<>/src/external/tng_io/src/compression/mtf.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/rle.c.o -c /<>/src/external/tng_io/src/compression/rle.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/tng_compress.c.o -c /<>/src/external/tng_io/src/compression/tng_compress.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/vals16.c.o -c /<>/src/external/tng_io/src/compression/vals16.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/warnmalloc.c.o -c /<>/src/external/tng_io/src/compression/warnmalloc.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/widemuldiv.c.o -c /<>/src/external/tng_io/src/compression/widemuldiv.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc2.c.o -c /<>/src/external/tng_io/src/compression/xtc2.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/compression/xtc3.c.o -c /<>/src/external/tng_io/src/compression/xtc3.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/tng_io.c.o -c /<>/src/external/tng_io/src/lib/tng_io.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/tng_io_obj.dir/__/external/tng_io/src/lib/md5.c.o -c /<>/src/external/tng_io/src/lib/md5.c cd /<>/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/mdrun.cpp.o -c /<>/src/programs/mdrun/mdrun.cpp cd /<>/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/membed.cpp.o -c /<>/src/programs/mdrun/membed.cpp cd /<>/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/repl_ex.cpp.o -c /<>/src/programs/mdrun/repl_ex.cpp cd /<>/build/openmpi-dp/src/programs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -o CMakeFiles/mdrun_objlib.dir/mdrun/runner.cpp.o -c /<>/src/programs/mdrun/runner.cpp make[3]: Leaving directory '/<>/build/openmpi-dp' [ 1%] Built target mdrun_objlib /<>/src/external/tng_io/src/lib/tng_io.c: In function ‘tng_time_get_str’: /<>/src/external/tng_io/src/lib/tng_io.c:15187:24: warning: ‘%02d’ directive output may be truncated writing between 2 and 11 bytes into a region of size between 0 and 16 [-Wformat-truncation=] "%4d-%02d-%02d %02d:%02d:%02d", ^~~~ In file included from /usr/include/stdio.h:862, from /<>/src/external/tng_io/include/tng/tng_io.h:308, from /<>/src/external/tng_io/src/lib/tng_io.c:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:64:10: note: ‘__builtin___snprintf_chk’ output between 20 and 72 bytes into a destination of size 24 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[3]: Leaving directory '/<>/build/openmpi-dp' [ 5%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/cmake -D VERSION_VARIABLES=/<>/build/openmpi-dp/VersionInfo.cmake -D VERSION_CMAKEIN=/<>/src/gromacs/utility/baseversion-gen.c.cmakein -D VERSION_OUT=utility/baseversion-gen.c -P /<>/cmake/gmxConfigureVersionInfo.cmake cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/cmake -E touch utility/baseversion-gen.c cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= Scanning dependencies of target libgromacs make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/bonded.cpp.o -c /<>/src/gromacs/listed-forces/bonded.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/disre.cpp.o -c /<>/src/gromacs/listed-forces/disre.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-forces.cpp.o -c /<>/src/gromacs/listed-forces/listed-forces.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/listed-internal.cpp.o -c /<>/src/gromacs/listed-forces/listed-internal.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/manage-threading.cpp.o -c /<>/src/gromacs/listed-forces/manage-threading.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/orires.cpp.o -c /<>/src/gromacs/listed-forces/orires.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/pairs.cpp.o -c /<>/src/gromacs/listed-forces/pairs.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/position-restraints.cpp.o -c /<>/src/gromacs/listed-forces/position-restraints.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/listed-forces/restcbt.cpp.o -c /<>/src/gromacs/listed-forces/restcbt.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpcontext.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpmodule.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/cmdlinehelpwriter.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineinit.cpp.o -c /<>/src/gromacs/commandline/cmdlineinit.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodule.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodule.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/cmdlinemodulemanager.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineoptionsmodule.cpp.o -c /<>/src/gromacs/commandline/cmdlineoptionsmodule.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/cmdlineparser.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/cmdlineprogramcontext.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/filenm.cpp.o -c /<>/src/gromacs/commandline/filenm.cpp /<>/src/gromacs/commandline/filenm.cpp: In function ‘int add_suffix_to_output_names(t_filenm*, int, const char*)’: /<>/src/gromacs/commandline/filenm.cpp:245:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(newname, "%s%s.%s", buf, suffix, extpos + 1); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/commandline/filenm.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/pargs.cpp.o -c /<>/src/gromacs/commandline/pargs.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/shellcompletions.cpp.o -c /<>/src/gromacs/commandline/shellcompletions.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/commandline/viewit.cpp.o -c /<>/src/gromacs/commandline/viewit.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/dlbtiming.cpp.o -c /<>/src/gromacs/domdec/dlbtiming.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec.cpp.o -c /<>/src/gromacs/domdec/domdec.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_box.cpp.o -c /<>/src/gromacs/domdec/domdec_box.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_constraints.cpp.o -c /<>/src/gromacs/domdec/domdec_constraints.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_network.cpp.o -c /<>/src/gromacs/domdec/domdec_network.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_setup.cpp.o -c /<>/src/gromacs/domdec/domdec_setup.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_specatomcomm.cpp.o -c /<>/src/gromacs/domdec/domdec_specatomcomm.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_topology.cpp.o -c /<>/src/gromacs/domdec/domdec_topology.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/domdec/domdec_vsite.cpp.o -c /<>/src/gromacs/domdec/domdec_vsite.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/calculate-spline-moduli.cpp.o -c /<>/src/gromacs/ewald/calculate-spline-moduli.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald-utils.cpp.o -c /<>/src/gromacs/ewald/ewald-utils.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/ewald.cpp.o -c /<>/src/gromacs/ewald/ewald.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/long-range-correction.cpp.o -c /<>/src/gromacs/ewald/long-range-correction.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gather.cpp.o -c /<>/src/gromacs/ewald/pme-gather.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu-internal.cpp.o -c /<>/src/gromacs/ewald/pme-gpu-internal.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-gpu.cpp.o -c /<>/src/gromacs/ewald/pme-gpu.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-grid.cpp.o -c /<>/src/gromacs/ewald/pme-grid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-load-balancing.cpp.o -c /<>/src/gromacs/ewald/pme-load-balancing.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-only.cpp.o -c /<>/src/gromacs/ewald/pme-only.cpp /<>/src/gromacs/ewald/pme-load-balancing.cpp: In function ‘void pme_load_balance(pme_load_balancing_t*, t_commrec*, FILE*, FILE*, const gmx::MDLogger&, const t_inputrec*, t_state*, double, interaction_const_t*, nonbonded_verlet_t*, gmx_pme_t**, gmx_int64_t)’: /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%10s’ directive writing 10 bytes into a region of size between 1 and 4085 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:593:37: print_grid(fp_err, fp_log, buf, "timed with", set, cycles); ~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: note: assuming directive output of 5 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 8577 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3698 and 4039 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 58 and 4494 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:446:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 3699 and 4040 [-Wformat-overflow=] sprintf(buf, "%-11s%10s pme grid %d %d %d, coulomb cutoff %.3f%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/ewald/pme-load-balancing.cpp:449:13: buft); ~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /usr/include/c++/8/ext/string_conversions.h:43, from /usr/include/c++/8/bits/basic_string.h:6391, from /usr/include/c++/8/string:52, from /usr/include/c++/8/stdexcept:39, from /usr/include/c++/8/array:39, from /usr/include/c++/8/tuple:39, from /usr/include/c++/8/bits/unique_ptr.h:37, from /usr/include/c++/8/memory:80, from /<>/src/gromacs/utility/allocator.h:51, from /<>/src/gromacs/utility/alignedallocator.h:51, from /<>/src/gromacs/math/paddedvector.h:50, from /<>/src/gromacs/mdtypes/forcerec.h:42, from /<>/src/gromacs/ewald/pme-load-balancing.h:49, from /<>/src/gromacs/ewald/pme-load-balancing.cpp:46: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 57 and 4493 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-pp.cpp.o -c /<>/src/gromacs/ewald/pme-pp.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-redistribute.cpp.o -c /<>/src/gromacs/ewald/pme-redistribute.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-solve.cpp.o -c /<>/src/gromacs/ewald/pme-solve.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spline-work.cpp.o -c /<>/src/gromacs/ewald/pme-spline-work.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme-spread.cpp.o -c /<>/src/gromacs/ewald/pme-spread.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/ewald/pme.cpp.o -c /<>/src/gromacs/ewald/pme.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/eigensolver.cpp.o -c /<>/src/gromacs/linearalgebra/eigensolver.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/gmx_arpack.cpp.o -c /<>/src/gromacs/linearalgebra/gmx_arpack.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/matrix.cpp.o -c /<>/src/gromacs/linearalgebra/matrix.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/nrjac.cpp.o -c /<>/src/gromacs/linearalgebra/nrjac.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/linearalgebra/sparsematrix.cpp.o -c /<>/src/gromacs/linearalgebra/sparsematrix.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/3dtransforms.cpp.o -c /<>/src/gromacs/math/3dtransforms.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/do_fit.cpp.o -c /<>/src/gromacs/math/do_fit.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/functions.cpp.o -c /<>/src/gromacs/math/functions.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/invertmatrix.cpp.o -c /<>/src/gromacs/math/invertmatrix.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/units.cpp.o -c /<>/src/gromacs/math/units.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/utilities.cpp.o -c /<>/src/gromacs/math/utilities.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/veccompare.cpp.o -c /<>/src/gromacs/math/veccompare.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/math/vecdump.cpp.o -c /<>/src/gromacs/math/vecdump.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/df_history.cpp.o -c /<>/src/gromacs/mdtypes/df_history.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/iforceprovider.cpp.o -c /<>/src/gromacs/mdtypes/iforceprovider.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/inputrec.cpp.o -c /<>/src/gromacs/mdtypes/inputrec.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/md_enums.cpp.o -c /<>/src/gromacs/mdtypes/md_enums.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/observableshistory.cpp.o -c /<>/src/gromacs/mdtypes/observableshistory.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdtypes/state.cpp.o -c /<>/src/gromacs/mdtypes/state.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/helpformat.cpp /<>/src/gromacs/mdtypes/inputrec.cpp: In function ‘void pr_awh(FILE*, int, gmx::AwhParams*)’: /<>/src/gromacs/mdtypes/inputrec.cpp:713:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:715:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:717:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:719:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:721:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:723:18: warning: ‘-share-bias-multisim’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-bias-multisim", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:725:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:679:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:681:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:683:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:685:18: warning: ‘-target-beta-scalng’ directive writing 19 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scalng", prefix); ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:687:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:689:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:691:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:693:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:695:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ /<>/src/gromacs/mdtypes/inputrec.cpp:701:28: note: directive argument in the range [1, 2147483647] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/mdtypes/inputrec.h:40, from /<>/src/gromacs/mdtypes/inputrec.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/helpmanager.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/helptopic.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/helpwritercontext.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/onlinehelp/rstparser.cpp.o -c /<>/src/gromacs/onlinehelp/rstparser.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/boxutilities.cpp.o -c /<>/src/gromacs/pbcutil/boxutilities.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/mshift.cpp.o -c /<>/src/gromacs/pbcutil/mshift.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc-simd.cpp.o -c /<>/src/gromacs/pbcutil/pbc-simd.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/pbc.cpp.o -c /<>/src/gromacs/pbcutil/pbc.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pbcutil/rmpbc.cpp.o -c /<>/src/gromacs/pbcutil/rmpbc.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/seed.cpp.o -c /<>/src/gromacs/random/seed.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/random/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tabulatednormaldistribution.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/tables/cubicsplinetable.cpp.o -c /<>/src/gromacs/tables/cubicsplinetable.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H 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-I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/cstringutil.cpp.o -c /<>/src/gromacs/utility/cstringutil.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorcodes.cpp.o -c /<>/src/gromacs/utility/errorcodes.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/errorformat.cpp.o -c /<>/src/gromacs/utility/errorformat.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/exceptions.cpp.o -c /<>/src/gromacs/utility/exceptions.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fatalerror.cpp.o -c /<>/src/gromacs/utility/fatalerror.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/fileredirector.cpp.o -c /<>/src/gromacs/utility/fileredirector.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/filestream.cpp.o -c /<>/src/gromacs/utility/filestream.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/futil.cpp.o -c /<>/src/gromacs/utility/futil.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxassert.cpp.o -c /<>/src/gromacs/utility/gmxassert.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxomp.cpp.o -c /<>/src/gromacs/utility/gmxomp.cpp /<>/src/gromacs/utility/futil.cpp: In function ‘FILE* gmx_ffopen(const char*, const char*)’: /<>/src/gromacs/utility/futil.cpp:314:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 240 [-Wformat-overflow=] sprintf(buf, "uncompress -c < %s", fn); ^~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:503:29: ff = uncompress(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 272 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:330:18: warning: ‘%s’ directive writing up to 255 bytes into a region of size 244 [-Wformat-overflow=] sprintf(buf, "gunzip -c < %s", fn); ^~~~~~~~~~~~~~~~ /<>/src/gromacs/utility/futil.cpp:510:29: ff = gunzip(buf, mode); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/utility/futil.h:49, from /<>/src/gromacs/utility/futil.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 268 bytes into a destination of size 256 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/gmxregex.cpp.o -c /<>/src/gromacs/utility/gmxregex.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/ikeyvaluetreeerror.cpp.o -c /<>/src/gromacs/utility/ikeyvaluetreeerror.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/init.cpp.o -c /<>/src/gromacs/utility/init.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/inmemoryserializer.cpp.o -c /<>/src/gromacs/utility/inmemoryserializer.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/int64_to_int.cpp.o -c /<>/src/gromacs/utility/int64_to_int.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetree.cpp.o -c /<>/src/gromacs/utility/keyvaluetree.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/keyvaluetreeserializer.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/keyvaluetreetransform.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/logger.cpp.o -c /<>/src/gromacs/utility/logger.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/loggerbuilder.cpp.o -c /<>/src/gromacs/utility/loggerbuilder.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/messagestringcollector.cpp.o -c /<>/src/gromacs/utility/messagestringcollector.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/niceheader.cpp.o -c /<>/src/gromacs/utility/niceheader.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/path.cpp.o -c /<>/src/gromacs/utility/path.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/pleasecite.cpp.o -c /<>/src/gromacs/utility/pleasecite.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/programcontext.cpp.o -c /<>/src/gromacs/utility/programcontext.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/qsort_threadsafe.cpp.o -c /<>/src/gromacs/utility/qsort_threadsafe.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/smalloc.cpp.o -c /<>/src/gromacs/utility/smalloc.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strconvert.cpp.o -c /<>/src/gromacs/utility/strconvert.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/strdb.cpp.o -c /<>/src/gromacs/utility/strdb.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringstream.cpp.o -c /<>/src/gromacs/utility/stringstream.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/stringutil.cpp.o -c /<>/src/gromacs/utility/stringutil.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/sysinfo.cpp.o -c /<>/src/gromacs/utility/sysinfo.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textreader.cpp.o -c /<>/src/gromacs/utility/textreader.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/textwriter.cpp.o -c /<>/src/gromacs/utility/textwriter.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/txtdump.cpp.o -c /<>/src/gromacs/utility/txtdump.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/utility/variant.cpp.o -c /<>/src/gromacs/utility/variant.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/checkpoint.cpp.o -c /<>/src/gromacs/fileio/checkpoint.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/confio.cpp.o -c /<>/src/gromacs/fileio/confio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/enxio.cpp.o -c /<>/src/gromacs/fileio/enxio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/espio.cpp.o -c /<>/src/gromacs/fileio/espio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/filetypes.cpp.o -c /<>/src/gromacs/fileio/filetypes.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/g96io.cpp.o -c /<>/src/gromacs/fileio/g96io.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmx_internal_xdr.cpp.o -c /<>/src/gromacs/fileio/gmx_internal_xdr.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio-xdr.cpp.o -c /<>/src/gromacs/fileio/gmxfio-xdr.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/gmxfio.cpp.o -c /<>/src/gromacs/fileio/gmxfio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/groio.cpp.o -c /<>/src/gromacs/fileio/groio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/libxdrf.cpp.o -c /<>/src/gromacs/fileio/libxdrf.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/matio.cpp.o -c /<>/src/gromacs/fileio/matio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/md5.cpp.o -c /<>/src/gromacs/fileio/md5.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/mtxio.cpp.o -c /<>/src/gromacs/fileio/mtxio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/oenv.cpp.o -c /<>/src/gromacs/fileio/oenv.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/pdbio.cpp.o -c /<>/src/gromacs/fileio/pdbio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/readinp.cpp.o -c /<>/src/gromacs/fileio/readinp.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/timecontrol.cpp.o -c /<>/src/gromacs/fileio/timecontrol.cpp /<>/src/gromacs/fileio/pdbio.cpp: In function ‘int read_pdbfile(FILE*, char*, int*, t_atoms*, t_symtab*, real (*)[3], int*, real (*)[3], gmx_bool, gmx_conect)’: /<>/src/gromacs/fileio/pdbio.cpp:827:21: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/fileio/pdbio.cpp:833:29: warning: ‘d’ directive writing 1 byte into a region of size between 0 and 31 [-Wformat-overflow=] sprintf(format, "%s%%d", form2); ^~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/fileio/pdbio.h:41, from /<>/src/gromacs/fileio/pdbio.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 34 bytes into a destination of size 32 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tngio.cpp.o -c /<>/src/gromacs/fileio/tngio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/tpxio.cpp.o -c /<>/src/gromacs/fileio/tpxio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trrio.cpp.o -c /<>/src/gromacs/fileio/trrio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/trxio.cpp.o -c /<>/src/gromacs/fileio/trxio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/warninp.cpp.o -c /<>/src/gromacs/fileio/warninp.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/writeps.cpp.o -c /<>/src/gromacs/fileio/writeps.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xdrd.cpp.o -c /<>/src/gromacs/fileio/xdrd.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xtcio.cpp.o -c /<>/src/gromacs/fileio/xtcio.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fileio/xvgr.cpp.o -c /<>/src/gromacs/fileio/xvgr.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/swap/swapcoords.cpp.o -c /<>/src/gromacs/swap/swapcoords.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/essentialdynamics/edsam.cpp.o -c /<>/src/gromacs/essentialdynamics/edsam.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull.cpp.o -c /<>/src/gromacs/pulling/pull.cpp /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void nice_legend(const char***, int*, char**, const char*, const char*, char)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 10 and 4105 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp: In function ‘void write_edo_legend(gmx_edsam_t, int, const gmx_output_env_t*)’: /<>/src/gromacs/essentialdynamics/edsam.cpp:2462:18: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4094 [-Wformat-overflow=] sprintf(tmp, "%c %s", EDgroupchar, value); ^~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2606:59: nice_legend(&setname, &nsets, &LegendStr, buf, "kJ/mol/nm", get_EDgroupChar(nr_edi, nED)); ~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 3 and 4098 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/essentialdynamics/edsam.cpp:2464:19: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(tmp2, "%s (%s)", tmp, unit); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/essentialdynamics/edsam.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pull_rotation.cpp.o -c /<>/src/gromacs/pulling/pull_rotation.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/pulling/pullutil.cpp.o -c /<>/src/gromacs/pulling/pullutil.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/awh.cpp.o -c /<>/src/gromacs/awh/awh.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/bias.cpp.o -c /<>/src/gromacs/awh/bias.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasparams.cpp.o -c /<>/src/gromacs/awh/biasparams.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biassharing.cpp.o -c /<>/src/gromacs/awh/biassharing.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biasstate.cpp.o -c /<>/src/gromacs/awh/biasstate.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/biaswriter.cpp.o -c /<>/src/gromacs/awh/biaswriter.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/coordstate.cpp.o -c /<>/src/gromacs/awh/coordstate.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationgrid.cpp.o -c /<>/src/gromacs/awh/correlationgrid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationhistory.cpp.o -c /<>/src/gromacs/awh/correlationhistory.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/correlationtensor.cpp.o -c /<>/src/gromacs/awh/correlationtensor.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/grid.cpp.o -c /<>/src/gromacs/awh/grid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/histogramsize.cpp.o -c /<>/src/gromacs/awh/histogramsize.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/pointstate.cpp.o -c /<>/src/gromacs/awh/pointstate.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/awh/read-params.cpp.o -c /<>/src/gromacs/awh/read-params.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/simd/support.cpp.o -c /<>/src/gromacs/simd/support.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imd.cpp.o -c /<>/src/gromacs/imd/imd.cpp /<>/src/gromacs/awh/read-params.cpp: In function ‘gmx::AwhParams* gmx::readAndCheckAwhParams(int*, t_inpfile**, const t_inputrec*, warninp_t)’: /<>/src/gromacs/awh/read-params.cpp:503:18: warning: ‘-potential’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-potential", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:507:18: warning: ‘-seed’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-seed", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:516:18: warning: ‘-nstout’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstout", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4063 [-Wformat-overflow=] sprintf(buf, "Not writing AWH output with AWH (%s = %d) does not make sense", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, awhParams->nstOut); ~~~ /<>/src/gromacs/awh/read-params.cpp:521:22: note: directive argument in the range [-2147483648, 0] In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 59 and 4164 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:529:22: warning: ‘ (’ directive writing 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s (%d) should be a multiple of nstenergy (%d)", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 43 and 4158 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:535:18: warning: ‘-nstsample’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nstsample", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:539:18: warning: ‘-nsamples-update’ directive writing 16 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nsamples-update", prefix); ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:544:22: warning: ‘ needs to be an integer > 0’ directive writing 27 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(buf, "%s needs to be an integer > 0", opt); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 28 and 4123 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:549:18: warning: ‘-share-multisim’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-multisim", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:553:18: warning: ‘-nbias’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-nbias", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:566:28: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(prefixawh, "%s%d", prefix, k + 1); ^~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 2 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:282:18: warning: ‘-error-init’ directive writing 11 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-error-init", prefix); ^~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 12 and 4107 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:295:18: warning: ‘-growth’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-growth", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:302:18: warning: ‘-equilibrate-histogram’ directive writing 22 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-equilibrate-histogram", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 23 and 4118 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:306:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4089 [-Wformat-overflow=] sprintf(warningmsg, "Option %s will only have an effect for histogram growth type '%s'.", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ opt, EAWHGROWTH(eawhgrowthEXP_LINEAR)); ~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 63 or more bytes (assuming 4158) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:315:18: warning: ‘-target’ directive writing 7 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target", prefix); ^~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:333:18: warning: ‘-target-beta-scaling’ directive writing 20 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-beta-scaling", prefix); ^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 21 and 4116 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:359:18: warning: ‘-target-cutoff’ directive writing 14 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-target-cutoff", prefix); ^~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:384:18: warning: ‘-user-data’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-user-data", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:391:18: warning: ‘-share-group’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-share-group", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:402:18: warning: ‘-ndim’ directive writing 5 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-ndim", prefix); ^~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:419:28: warning: ‘-dim’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(prefixdim, "%s-dim%d", prefix, d + 1); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 6 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:105:18: warning: ‘-coord-provider’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-provider", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:112:18: warning: ‘-coord-index’ directive writing 12 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-coord-index", prefix); ^~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:150:18: warning: ‘-start’ directive writing 6 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-start", prefix); ^~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:153:18: warning: ‘-end’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-end", prefix); ^~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4061 [-Wformat-overflow=] sprintf(warningmsg, "The given interval length given by %s-start (%g) and %s-end (%g) is zero. " ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "This will result in only one point along this axis in the coordinate value grid.", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:420:36: readDimParams(&ninp, &inp, prefixdim, &awhBiasParams->dimParams[d], ir->pull, wi, bComment); ~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes /<>/src/gromacs/awh/read-params.cpp:158:29: note: assuming directive output of 12 bytes In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 149 and 8363 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:194:18: warning: ‘-force-constant’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-force-constant", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:205:18: warning: ‘-diffusion’ directive writing 10 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-diffusion", prefix); ^~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 11 and 4106 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:211:29: warning: ‘ not explicitly set by user....’ directive writing 68 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(warningmsg, "%s not explicitly set by user." ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ " You can choose to use a default value (%g nm^2/ps or rad^2/ps) but this may very well be non-optimal for your system!", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 150 and 4251 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/awh/read-params.cpp:222:18: warning: ‘-cover-diameter’ directive writing 15 bytes into a region of size between 1 and 4096 [-Wformat-overflow=] sprintf(opt, "%s-cover-diameter", prefix); ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /usr/include/c++/8/cstdio:42, from /<>/src/gromacs/awh/awh.h:65, from /<>/src/gromacs/awh/read-params.cpp:41: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 16 and 4111 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/imd/imdsocket.cpp.o -c /<>/src/gromacs/imd/imdsocket.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/chargegroup.cpp.o -c /<>/src/gromacs/gmxlib/chargegroup.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/conformation-utilities.cpp.o -c /<>/src/gromacs/gmxlib/conformation-utilities.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/network.cpp.o -c /<>/src/gromacs/gmxlib/network.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nrnb.cpp.o -c /<>/src/gromacs/gmxlib/nrnb.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_free_energy.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_free_energy.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_generic_cg.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_generic_cg.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCSTab_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecCoul_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwBhamSh_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJEwSh_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwLJSh_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSh_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwBhamSw_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwLJSw_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEwSw_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJEw_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecEw_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecGB_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEwSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJEw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecNone_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSh_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwBhamSw_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSh_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwLJSw_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRFCut_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwBham_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwCSTab_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwLJ_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomP1P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW3W3_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4P1_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_ElecRF_VdwNone_GeomW4W4_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsall.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_allvsallgb.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicc.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c.o -c /<>/src/gromacs/gmxlib/nonbonded/nb_kernel_c/nb_kernel_c.c cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gmxlib/nonbonded/nonbonded.cpp.o -c /<>/src/gromacs/gmxlib/nonbonded/nonbonded.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/broadcaststructs.cpp.o -c /<>/src/gromacs/mdlib/broadcaststructs.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/calc_verletbuf.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcmu.cpp.o -c /<>/src/gromacs/mdlib/calcmu.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/calcvir.cpp.o -c /<>/src/gromacs/mdlib/calcvir.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/clincs.cpp.o -c /<>/src/gromacs/mdlib/clincs.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/compute_io.cpp.o -c /<>/src/gromacs/mdlib/compute_io.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/constr.cpp.o -c /<>/src/gromacs/mdlib/constr.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/coupling.cpp.o -c /<>/src/gromacs/mdlib/coupling.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/csettle.cpp.o -c /<>/src/gromacs/mdlib/csettle.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ebin.cpp.o -c /<>/src/gromacs/mdlib/ebin.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/expanded.cpp.o -c /<>/src/gromacs/mdlib/expanded.cpp /<>/src/gromacs/mdlib/clincs.cpp: In function ‘gmx_bool constrain_lincs(FILE*, gmx_bool, gmx_bool, t_inputrec*, gmx_int64_t, gmx_lincsdata*, t_mdatoms*, t_commrec*, real (*)[3], real (*)[3], real (*)[3], real (*)[3], t_pbc*, real, real*, real, real (*)[3], gmx_bool, real (*)[3], int, t_nrnb*, int, int*)’: /<>/src/gromacs/mdlib/clincs.cpp:2486:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 4051 and 4062 [-Wformat-overflow=] sprintf(buf, "\nStep %s, time %g (ps) LINCS WARNING%s\n" ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "relative constraint deviation after LINCS:\n" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ "rms %.6f, max %.6f (between atoms %d and %d)\n", ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2490:25: buf3, ~~~~ /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes /<>/src/gromacs/mdlib/clincs.cpp:2486:30: note: assuming directive output of 8 bytes In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/domdec/domdec.h:61, from /<>/src/gromacs/mdlib/clincs.cpp:49: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output 120 or more bytes (assuming 4236) into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/force.cpp.o -c /<>/src/gromacs/mdlib/force.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/forcerec.cpp.o -c /<>/src/gromacs/mdlib/forcerec.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn.cpp.o -c /<>/src/gromacs/mdlib/genborn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/genborn_allvsall.cpp.o -c /<>/src/gromacs/mdlib/genborn_allvsall.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/gmx_omp_nthreads.cpp.o -c /<>/src/gromacs/mdlib/gmx_omp_nthreads.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/groupcoord.cpp.o -c /<>/src/gromacs/mdlib/groupcoord.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/main.cpp.o -c /<>/src/gromacs/mdlib/main.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/md_support.cpp.o -c /<>/src/gromacs/mdlib/md_support.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdatoms.cpp.o -c /<>/src/gromacs/mdlib/mdatoms.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin.cpp.o -c /<>/src/gromacs/mdlib/mdebin.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdebin_bar.cpp.o -c /<>/src/gromacs/mdlib/mdebin_bar.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdoutf.cpp.o -c /<>/src/gromacs/mdlib/mdoutf.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/mdsetup.cpp.o -c /<>/src/gromacs/mdlib/mdsetup.cpp /<>/src/gromacs/mdlib/mdebin.cpp: In function ‘FILE* open_dhdl(const char*, const t_inputrec*, const gmx_output_env_t*)’: /<>/src/gromacs/mdlib/mdebin.cpp:852:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4077 [-Wformat-overflow=] nps = sprintf(buf, "%s %s to %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 20 and 4115 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/gromacs/mdlib/mdebin.cpp:848:36: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4080 [-Wformat-overflow=] nps = sprintf(buf, "%s %s %s", deltag, lambda, lambda_vec_str); ^~~~~~~~~~ ~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/mdebin.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 17 and 4112 bytes into a destination of size 4096 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/minimize.cpp.o -c /<>/src/gromacs/mdlib/minimize.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_atomdata.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_atomdata.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_grid.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_grid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_common.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_cpu.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_gpu_ref.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_prune.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/nbnxn_kernel_ref_prune.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_F_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_2xnn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_2xnn/nbnxn_kernel_simd_2xnn_prune.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEwTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecEw_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTabTwinCut_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecQSTab_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJCombLB_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJEwCombGeom_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJFSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJPSw_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_F_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_ElecRF_VdwLJ_VgrpF_4xn.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_kernels/simd_4xn/nbnxn_kernel_simd_4xn_prune.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_search.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_search.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nbnxn_tuning.cpp.o -c /<>/src/gromacs/mdlib/nbnxn_tuning.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/ns.cpp.o -c /<>/src/gromacs/mdlib/ns.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/nsgrid.cpp.o -c /<>/src/gromacs/mdlib/nsgrid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/perf_est.cpp.o -c /<>/src/gromacs/mdlib/perf_est.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gamess.cpp.o -c /<>/src/gromacs/mdlib/qm_gamess.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_gaussian.cpp.o -c /<>/src/gromacs/mdlib/qm_gaussian.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_mopac.cpp.o -c /<>/src/gromacs/mdlib/qm_mopac.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/qm_orca.cpp.o -c /<>/src/gromacs/mdlib/qm_orca.cpp cd 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shakef.cpp.o -c /<>/src/gromacs/mdlib/shakef.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/shellfc.cpp.o -c /<>/src/gromacs/mdlib/shellfc.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sighandler.cpp.o -c /<>/src/gromacs/mdlib/sighandler.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/sim_util.cpp.o -c /<>/src/gromacs/mdlib/sim_util.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/simulationsignal.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/splitter.cpp.o -c /<>/src/gromacs/mdlib/splitter.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/stat.cpp.o -c /<>/src/gromacs/mdlib/stat.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tgroup.cpp.o -c /<>/src/gromacs/mdlib/tgroup.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/tpi.cpp.o -c /<>/src/gromacs/mdlib/tpi.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/trajectory_writing.cpp.o -c /<>/src/gromacs/mdlib/trajectory_writing.cpp /<>/src/gromacs/mdlib/sim_util.cpp: In function ‘void print_time(FILE*, gmx_walltime_accounting_t, gmx_int64_t, t_inputrec*, t_commrec*)’: /<>/src/gromacs/mdlib/sim_util.cpp:159:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 48 [-Wformat-overflow=] sprintf(buf, "%s", timebuf); ^~~~ ~~~~~~~ In file included from /usr/include/stdio.h:862, from /<>/src/gromacs/mdlib/mdebin.h:40, from /<>/src/gromacs/mdlib/sim_util.h:41, from /<>/src/gromacs/mdlib/sim_util.cpp:39: /usr/include/aarch64-linux-gnu/bits/stdio2.h:33:34: note: ‘__builtin___sprintf_chk’ output between 1 and 4096 bytes into a destination of size 48 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/update.cpp.o -c /<>/src/gromacs/mdlib/update.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vcm.cpp.o -c /<>/src/gromacs/mdlib/vcm.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/vsite.cpp.o -c /<>/src/gromacs/mdlib/vsite.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wall.cpp.o -c /<>/src/gromacs/mdlib/wall.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/mdlib/wnblist.cpp.o -c /<>/src/gromacs/mdlib/wnblist.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/applied-forces/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/electricfield.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/calcgrid.cpp.o -c /<>/src/gromacs/fft/calcgrid.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft.cpp.o -c /<>/src/gromacs/fft/fft.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft5d.cpp.o -c /<>/src/gromacs/fft/fft5d.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/parallel_3dfft.cpp.o -c /<>/src/gromacs/fft/parallel_3dfft.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/fft/fft_fftw3.cpp.o -c /<>/src/gromacs/fft/fft_fftw3.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/gpu_utils/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/hostallocator.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 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/<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/filenameoptionmanager.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DHAVE_CONFIG_H -DUSE_STD_INTTYPES_H -I/<>/build/openmpi-dp/src -I/<>/src -I/<>/src/external/tng_io/include -I/<>/build/openmpi-dp/tng/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -fopenmp -o CMakeFiles/libgromacs.dir/options/options.cpp.o -c /<>/src/gromacs/options/options.cpp cd /<>/build/openmpi-dp/src/gromacs && /usr/bin/mpicxx.openmpi 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-lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[3]: Leaving directory '/<>/build/openmpi-dp' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles 0 make[1]: Leaving directory '/<>/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian # above ifeq..linux: See https://bugs.debian.org/839387 for background, # seems to have a specific non-fakeroot failure on hurd/kfreebsd as well? # rsh_agent: https://bugs.debian.org/494046 # oversubscribe: https://bugs.debian.org/850229#51 /usr/bin/make -j4 -C build/openmpi tests make[1]: Entering directory '/<>/build/openmpi' /usr/bin/cmake -H/<> -B/<>/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/openmpi' /usr/bin/cmake -H/<> -B/<>/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles 98 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/openmpi /<>/build/openmpi/src/external/gmock-1.7.0 /<>/build/openmpi/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/onlinehelp/tests /<>/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/mdrunutility/tests /<>/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/openmpi' Scanning dependencies of target mdrunutility-test-shared make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build Scanning dependencies of target gmock make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build Scanning dependencies of target onlinehelp-test-shared [ 3%] Built target tng_io_obj make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/external/gmock-1.7.0 && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/openmpi' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/openmpi' [ 80%] Built target libgromacs cd /<>/build/openmpi/src/external/gmock-1.7.0 && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/openmpi' [ 80%] Built target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/openmpi' [ 81%] Built target mdrunutility-test-shared cd /<>/build/openmpi/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/openmpi/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/openmpi' [ 81%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/openmpi /<>/build/openmpi/src/testutils /<>/build/openmpi/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/openmpi/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/openmpi/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/openmpi' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/openmpi /<>/build/openmpi/src/testutils/tests /<>/build/openmpi/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/openmpi /<>/build/openmpi/src/testutils/tests /<>/build/openmpi/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/compat/tests /<>/build/openmpi/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/mdlib/tests /<>/build/openmpi/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/openmpi' make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp cd /<>/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp Scanning dependencies of target testutils-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build Scanning dependencies of target mdlib-test make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/applied-forces/tests /<>/build/openmpi/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/listed-forces/tests /<>/build/openmpi/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 85%] Built target listed-forces-test cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/openmpi/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/commandline/tests /<>/build/openmpi/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/openmpi/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/ewald/tests /<>/build/openmpi/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/openmpi/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/fft/tests /<>/build/openmpi/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/openmpi/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 86%] Built target fft-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/gpu_utils/tests /<>/build/openmpi/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/openmpi/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 87%] Built target commandline-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/hardware/tests /<>/build/openmpi/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/openmpi/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 88%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/math/tests /<>/build/openmpi/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/openmpi/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 88%] Built target hardware-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/mdrunutility/tests /<>/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 89%] Built target ewald-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/mdrunutility/tests /<>/build/openmpi/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/openmpi/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/onlinehelp/tests /<>/build/openmpi/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/openmpi/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 89%] Built target math-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/options/tests /<>/build/openmpi/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 89%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/random/tests /<>/build/openmpi/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/openmpi/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 89%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/tables/tests /<>/build/openmpi/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 90%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/taskassignment/tests /<>/build/openmpi/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 90%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/utility/tests /<>/build/openmpi/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/openmpi/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 91%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/fileio/tests /<>/build/openmpi/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/openmpi/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 92%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/pulling/tests /<>/build/openmpi/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp cd /<>/build/openmpi/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 92%] Built target pull-test /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/awh/tests /<>/build/openmpi/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp cd /<>/build/openmpi/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 94%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/openmpi /<>/build/openmpi/src/gromacs/simd/tests /<>/build/openmpi/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/openmpi/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 94%] Built target awh-test cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/openmpi/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp make[4]: Leaving directory '/<>/build/openmpi' [ 95%] Built target options-test cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/openmpi/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [ 97%] Built target utility-test cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3f.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi' [100%] Built target simd-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/openmpi /<>/build/openmpi /<>/build/openmpi/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/openmpi' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/openmpi' [100%] Built target tests make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles 0 make[2]: Leaving directory '/<>/build/openmpi' make[1]: Leaving directory '/<>/build/openmpi' (cd build/openmpi ; LD_LIBRARY_PATH=/<>/build/openmpi/lib \ OMPI_MCA_plm_rsh_agent=/bin/false \ OMPI_MCA_rmaps_base_oversubscribe=1 \ OMPI_MCA_btl_base_warn_component_unused=0 \ GTEST_FILTER="-*ChangingPinningPolicyRequiresCuda" \ ctest -V -E MdrunUtilityMpiUnitTests) UpdateCTestConfiguration from :/<>/build/openmpi/DartConfiguration.tcl Parse Config file:/<>/build/openmpi/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/openmpi/DartConfiguration.tcl Parse Config file:/<>/build/openmpi/DartConfiguration.tcl Test project /<>/build/openmpi Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/openmpi/bin/testutils-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (7 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (0 ms) 1: [----------] 34 tests from ReferenceDataTest (15 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (1 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (0 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) 1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (25 ms total) 1: [ PASSED ] 59 tests. 1/23 Test #1: TestUtilsUnitTests ............... Passed 0.24 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/<>/build/openmpi/bin/testutils-mpi-test" "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) 2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (0 ms total) 2: [ PASSED ] 1 test. 2/23 Test #2: TestUtilsMpiUnitTests ............ Passed 0.19 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/openmpi/bin/mdlib-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (0 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (2 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (0 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (1 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (3 ms total) 3: [ PASSED ] 40 tests. 3/23 Test #3: MdlibUnitTest .................... Passed 0.17 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/openmpi/bin/applied-forces-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/23 Test #4: AppliedForcesUnitTest ............ Passed 0.15 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/openmpi/bin/listed-forces-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (1 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/23 Test #5: ListedForcesTest ................. Passed 0.16 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/openmpi/bin/commandline-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (0 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (2 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (3 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (0 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (1 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (0 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (0 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (4 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (12 ms total) 6: [ PASSED ] 57 tests. 6/23 Test #6: CommandLineUnitTests ............. Passed 0.17 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/openmpi/bin/ewald-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (1 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (5 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (6 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (6 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (1 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (52 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (0 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (106 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (28 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (10 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (16 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (26 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (25 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (30 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (9 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (79 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (389 ms total) 7: [ PASSED ] 257 tests. 7/23 Test #7: EwaldUnitTests ................... Passed 0.58 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/openmpi/bin/fft-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (8 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (10 ms) 8: [----------] 2 tests from ManyFFTTest (19 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (4 ms) 8: [----------] 1 test from FFTTest (5 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (6 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (9 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (25 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (52 ms total) 8: [ PASSED ] 14 tests. 8/23 Test #8: FFTUnitTests ..................... Passed 0.20 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/openmpi/bin/gpu_utils-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 9: [==========] Running 27 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 6 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/0 (0 ms total) 9: 9: [----------] 6 tests from HostAllocatorTest/1, where TypeParam = float 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/1 (0 ms total) 9: 9: [----------] 6 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/2 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (1 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (1 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (0 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 27 tests from 6 test cases ran. (1 ms total) 9: [ PASSED ] 27 tests. 9/23 Test #9: GpuUtilsUnitTests ................ Passed 0.16 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/openmpi/bin/hardware-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (9 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (8 ms) 10: [----------] 4 tests from HardwareTopologyTest (31 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (31 ms total) 10: [ PASSED ] 4 tests. 10/23 Test #10: HardwareUnitTests ................ Passed 0.18 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/openmpi/bin/math-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (0 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (1 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (0 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (1 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) 11: [----------] 21 tests from FunctionTest (3 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (3 ms total) 11: [ PASSED ] 31 tests. 11/23 Test #11: MathUnitTests .................... Passed 0.16 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/openmpi/bin/mdrunutility-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (0 ms) 12: [----------] 17 tests from ThreadAffinityTest (6 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (6 ms total) 12: [ PASSED ] 17 tests. 12/23 Test #12: MdrunUtilityUnitTests ............ Passed 0.16 sec test 13 Start 13: OnlineHelpUnitTests 13: Test command: /<>/build/openmpi/bin/onlinehelp-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/OnlineHelpUnitTests.xml" 13: Test timeout computed to be: 30 13: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 13: [==========] Running 22 tests from 4 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from TextTableFormatterTest 13: [ RUN ] TextTableFormatterTest.HandlesBasicCase 13: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 13: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesIndentation 13: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 13: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (1 ms) 13: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 13: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 13: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 13: [----------] 6 tests from TextTableFormatterTest (1 ms total) 13: 13: [----------] 3 tests from HelpManagerTest 13: [ RUN ] HelpManagerTest.HandlesRootTopic 13: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 13: [ RUN ] HelpManagerTest.HandlesSubTopics 13: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 13: [ RUN ] HelpManagerTest.HandlesInvalidTopics 13: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) 13: [----------] 3 tests from HelpManagerTest (1 ms total) 13: 13: [----------] 2 tests from HelpTopicFormattingTest 13: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 13: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 13: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 13: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 13: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 13: 13: [----------] 11 tests from HelpWriterContextTest 13: [ RUN ] HelpWriterContextTest.FormatsParagraphs 13: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 13: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (1 ms) 13: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 13: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralText 13: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 13: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 13: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsBulletList 13: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 13: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms) 13: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 13: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsGridTable 13: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsTitles 13: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 13: [----------] 11 tests from HelpWriterContextTest (2 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 22 tests from 4 test cases ran. (4 ms total) 13: [ PASSED ] 22 tests. 13/23 Test #13: OnlineHelpUnitTests .............. Passed 0.17 sec test 14 Start 14: OptionsUnitTests 14: Test command: /<>/build/openmpi/bin/options-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/OptionsUnitTests.xml" 14: Test timeout computed to be: 30 14: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 14: [==========] Running 110 tests from 18 test cases. 14: [----------] Global test environment set-up. 14: [----------] 5 tests from AbstractOptionStorageTest 14: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 14: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 14: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 14: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 14: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (1 ms) 14: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 14: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (0 ms) 14: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 14: 14: [----------] 8 tests from FileNameOptionTest 14: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 14: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 14: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 14: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 14: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 14: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 14: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 14: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 14: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 14: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 14: [----------] 8 tests from FileNameOptionTest (0 ms total) 14: 14: [----------] 15 tests from FileNameOptionManagerTest 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 14: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (1 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 14: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 14: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 14: 14: [----------] 1 test from OptionsTest 14: [ RUN ] OptionsTest.FailsOnNonsafeStorage 14: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 14: [----------] 1 test from OptionsTest (0 ms total) 14: 14: [----------] 9 tests from OptionsAssignerTest 14: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 14: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 14: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 14: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 14: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMissingValue 14: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesExtraValue 14: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesGroups 14: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesSections 14: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 14: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 14: [----------] 9 tests from OptionsAssignerTest (1 ms total) 14: 14: [----------] 4 tests from OptionsAssignerBooleanTest 14: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 14: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 14: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 14: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 14: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 14: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 14: 14: [----------] 13 tests from OptionsAssignerIntegerTest 14: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 14: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 14: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 14: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 14: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 14: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 14: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 14: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (1 ms) 14: [----------] 13 tests from OptionsAssignerIntegerTest (1 ms total) 14: 14: [----------] 5 tests from OptionsAssignerDoubleTest 14: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 14: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 14: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 14: [----------] 5 tests from OptionsAssignerDoubleTest (0 ms total) 14: 14: [----------] 9 tests from OptionsAssignerStringTest 14: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 14: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 14: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 14: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 14: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 14: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 14: 14: [----------] 6 tests from OptionsAssignerEnumTest 14: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 14: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 14: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 14: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 14: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 14: 14: [----------] 8 tests from RepeatingOptionSectionTest 14: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 14: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 14: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 14: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 14: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 14: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 14: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 14: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 14: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 14: [----------] 8 tests from RepeatingOptionSectionTest (1 ms total) 14: 14: [----------] 1 test from TimeUnitManagerTest 14: [ RUN ] TimeUnitManagerTest.BasicOperations 14: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 14: [----------] 1 test from TimeUnitManagerTest (0 ms total) 14: 14: [----------] 4 tests from TimeUnitBehaviorTest 14: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 14: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 14: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 14: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 14: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 14: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 14: 14: [----------] 2 tests from TreeValueSupportAssignTest 14: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 14: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 14: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 14: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 14: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 14: 14: [----------] 1 test from TreeValueSupportAssignErrorTest 14: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 14: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 14: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 14: 14: [----------] 5 tests from TreeValueSupportCheckTest 14: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 14: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 14: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 14: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 14: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 14: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 14: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 14: 14: [----------] 6 tests from TreeValueSupportAdjustTest 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 14: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 14: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 14: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 14: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 14: 14: [----------] 8 tests from TreeValueSupportTest 14: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 14: [ OK ] TreeValueSupportTest.SupportsBooleanOption (1 ms) 14: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 14: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsInt64Option 14: [ OK ] TreeValueSupportTest.SupportsInt64Option (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsStringOption 14: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsFloatOption 14: [ OK ] TreeValueSupportTest.SupportsFloatOption (1 ms) 14: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 14: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 14: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsEnumOption 14: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 14: [----------] 8 tests from TreeValueSupportTest (2 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 110 tests from 18 test cases ran. (9 ms total) 14: [ PASSED ] 110 tests. 14/23 Test #14: OptionsUnitTests ................. Passed 0.17 sec test 15 Start 15: RandomUnitTests 15: Test command: /<>/build/openmpi/bin/random-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/RandomUnitTests.xml" 15: Test timeout computed to be: 30 15: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 15: [==========] Running 44 tests from 10 test cases. 15: [----------] Global test environment set-up. 15: [----------] 4 tests from ExponentialDistributionTest 15: [ RUN ] ExponentialDistributionTest.Output 15: [ OK ] ExponentialDistributionTest.Output (0 ms) 15: [ RUN ] ExponentialDistributionTest.Logical 15: [ OK ] ExponentialDistributionTest.Logical (0 ms) 15: [ RUN ] ExponentialDistributionTest.Reset 15: [ OK ] ExponentialDistributionTest.Reset (0 ms) 15: [ RUN ] ExponentialDistributionTest.AltParam 15: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 15: 15: [----------] 4 tests from GammaDistributionTest 15: [ RUN ] GammaDistributionTest.Output 15: [ OK ] GammaDistributionTest.Output (0 ms) 15: [ RUN ] GammaDistributionTest.Logical 15: [ OK ] GammaDistributionTest.Logical (0 ms) 15: [ RUN ] GammaDistributionTest.Reset 15: [ OK ] GammaDistributionTest.Reset (0 ms) 15: [ RUN ] GammaDistributionTest.AltParam 15: [ OK ] GammaDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from GammaDistributionTest (0 ms total) 15: 15: [----------] 4 tests from NormalDistributionTest 15: [ RUN ] NormalDistributionTest.Output 15: [ OK ] NormalDistributionTest.Output (0 ms) 15: [ RUN ] NormalDistributionTest.Logical 15: [ OK ] NormalDistributionTest.Logical (0 ms) 15: [ RUN ] NormalDistributionTest.Reset 15: [ OK ] NormalDistributionTest.Reset (0 ms) 15: [ RUN ] NormalDistributionTest.AltParam 15: [ OK ] NormalDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from NormalDistributionTest (0 ms total) 15: 15: [----------] 1 test from SeedTest 15: [ RUN ] SeedTest.makeRandomSeed 15: [ OK ] SeedTest.makeRandomSeed (0 ms) 15: [----------] 1 test from SeedTest (0 ms total) 15: 15: [----------] 6 tests from TabulatedNormalDistributionTest 15: [ RUN ] TabulatedNormalDistributionTest.Output14 15: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Output16 15: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 15: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Logical 15: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Reset 15: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.AltParam 15: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 15: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 15: 15: [----------] 1 test from TabulatedNormalDistributionTableTest 15: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 15: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (3 ms) 15: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 15: 15: [----------] 6 tests from ThreeFry2x64Test 15: [ RUN ] ThreeFry2x64Test.Logical 15: [ OK ] ThreeFry2x64Test.Logical (0 ms) 15: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 15: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 15: [ RUN ] ThreeFry2x64Test.Reseed 15: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 15: [ RUN ] ThreeFry2x64Test.Discard 15: [ OK ] ThreeFry2x64Test.Discard (0 ms) 15: [ RUN ] ThreeFry2x64Test.InvalidCounter 15: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 15: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 15: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 15: [----------] 6 tests from ThreeFry2x64Test (1 ms total) 15: 15: [----------] 4 tests from UniformIntDistributionTest 15: [ RUN ] UniformIntDistributionTest.Output 15: [ OK ] UniformIntDistributionTest.Output (0 ms) 15: [ RUN ] UniformIntDistributionTest.Logical 15: [ OK ] UniformIntDistributionTest.Logical (0 ms) 15: [ RUN ] UniformIntDistributionTest.Reset 15: [ OK ] UniformIntDistributionTest.Reset (0 ms) 15: [ RUN ] UniformIntDistributionTest.AltParam 15: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 15: 15: [----------] 5 tests from UniformRealDistributionTest 15: [ RUN ] UniformRealDistributionTest.GenerateCanonical 15: [ OK ] UniformRealDistributionTest.GenerateCanonical (0 ms) 15: [ RUN ] UniformRealDistributionTest.Output 15: [ OK ] UniformRealDistributionTest.Output (1 ms) 15: [ RUN ] UniformRealDistributionTest.Logical 15: [ OK ] UniformRealDistributionTest.Logical (0 ms) 15: [ RUN ] UniformRealDistributionTest.Reset 15: [ OK ] UniformRealDistributionTest.Reset (0 ms) 15: [ RUN ] UniformRealDistributionTest.AltParam 15: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 15: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 15: 15: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (1 ms) 15: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 44 tests from 10 test cases ran. (8 ms total) 15: [ PASSED ] 44 tests. 15/23 Test #15: RandomUnitTests .................. Passed 0.18 sec test 16 Start 16: TableUnitTests 16: Test command: /<>/build/openmpi/bin/table-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/TableUnitTests.xml" 16: Test timeout computed to be: 30 16: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 16: [==========] Running 20 tests from 2 test cases. 16: [----------] Global test environment set-up. 16: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 16: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 16: [ OK ] SplineTableTest/0.HandlesIncorrectInput (3 ms) 16: [ RUN ] SplineTableTest/0.Sinc 16: [ OK ] SplineTableTest/0.Sinc (2 ms) 16: [ RUN ] SplineTableTest/0.LJ12 16: [ OK ] SplineTableTest/0.LJ12 (36 ms) 16: [ RUN ] SplineTableTest/0.PmeCorrection 16: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 16: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 16: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 16: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 16: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 16: [ RUN ] SplineTableTest/0.TwoFunctions 16: [ OK ] SplineTableTest/0.TwoFunctions (70 ms) 16: [ RUN ] SplineTableTest/0.ThreeFunctions 16: [ OK ] SplineTableTest/0.ThreeFunctions (75 ms) 16: [ RUN ] SplineTableTest/0.Simd 16: [ OK ] SplineTableTest/0.Simd (17 ms) 16: [ RUN ] SplineTableTest/0.SimdTwoFunctions 16: [ OK ] SplineTableTest/0.SimdTwoFunctions (67 ms) 16: [----------] 10 tests from SplineTableTest/0 (276 ms total) 16: 16: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 16: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 16: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 16: [ RUN ] SplineTableTest/1.Sinc 16: [ OK ] SplineTableTest/1.Sinc (1 ms) 16: [ RUN ] SplineTableTest/1.LJ12 16: [ OK ] SplineTableTest/1.LJ12 (6 ms) 16: [ RUN ] SplineTableTest/1.PmeCorrection 16: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 16: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 16: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (0 ms) 16: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 16: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 16: [ RUN ] SplineTableTest/1.TwoFunctions 16: [ OK ] SplineTableTest/1.TwoFunctions (12 ms) 16: [ RUN ] SplineTableTest/1.ThreeFunctions 16: [ OK ] SplineTableTest/1.ThreeFunctions (12 ms) 16: [ RUN ] SplineTableTest/1.Simd 16: [ OK ] SplineTableTest/1.Simd (4 ms) 16: [ RUN ] SplineTableTest/1.SimdTwoFunctions 16: [ OK ] SplineTableTest/1.SimdTwoFunctions (11 ms) 16: [----------] 10 tests from SplineTableTest/1 (55 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 20 tests from 2 test cases ran. (331 ms total) 16: [ PASSED ] 20 tests. 16/23 Test #16: TableUnitTests ................... Passed 0.49 sec test 17 Start 17: TaskAssignmentUnitTests 17: Test command: /<>/build/openmpi/bin/taskassignment-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/TaskAssignmentUnitTests.xml" 17: Test timeout computed to be: 30 17: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 17: [==========] Running 3 tests from 1 test case. 17: [----------] Global test environment set-up. 17: [----------] 3 tests from GpuIdStringHandlingTest 17: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 17: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (0 ms) 17: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 17: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 17: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 17: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (1 ms) 17: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 3 tests from 1 test case ran. (1 ms total) 17: [ PASSED ] 3 tests. 17/23 Test #17: TaskAssignmentUnitTests .......... Passed 0.16 sec test 18 Start 18: UtilityUnitTests 18: Test command: /<>/build/openmpi/bin/utility-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/UtilityUnitTests.xml" 18: Test timeout computed to be: 30 18: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 18: [==========] Running 307 tests from 49 test cases. 18: [----------] Global test environment set-up. 18: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/0 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/1 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/2 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/3 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 18: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/4 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 18: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 18: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/5 (1 ms total) 18: 18: [----------] 1 test from EmptyArrayRefTest 18: [ RUN ] EmptyArrayRefTest.IsEmpty 18: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 18: [----------] 1 test from EmptyArrayRefTest (0 ms total) 18: 18: [----------] 1 test from EmptyConstArrayRefTest 18: [ RUN ] EmptyConstArrayRefTest.IsEmpty 18: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 18: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/3 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (1 ms) 18: [----------] 9 tests from ArrayRefTest/4 (1 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/17 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/19 (1 ms total) 18: 18: [----------] 4 tests from KeyValueTreeSerializerTest 18: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 18: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 18: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 18: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 18: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 18: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (0 ms) 18: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 18: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 18: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 18: 18: [----------] 6 tests from TreeValueTransformTest 18: [ RUN ] TreeValueTransformTest.SimpleTransforms 18: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 18: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 18: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 18: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 18: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (0 ms) 18: [ RUN ] TreeValueTransformTest.ObjectFromString 18: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 18: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 18: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (1 ms) 18: [ RUN ] TreeValueTransformTest.ScopedTransformRules 18: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 18: [----------] 6 tests from TreeValueTransformTest (1 ms total) 18: 18: [----------] 1 test from TreeValueTransformErrorTest 18: [ RUN ] TreeValueTransformErrorTest.ConversionError 18: [ OK ] TreeValueTransformErrorTest.ConversionError (0 ms) 18: [----------] 1 test from TreeValueTransformErrorTest (0 ms total) 18: 18: [----------] 5 tests from LoggerTest 18: [ RUN ] LoggerTest.EmptyLoggerWorks 18: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 18: [ RUN ] LoggerTest.LogsToStream 18: [ OK ] LoggerTest.LogsToStream (1 ms) 18: [ RUN ] LoggerTest.LogsToFile 18: [ OK ] LoggerTest.LogsToFile (0 ms) 18: [ RUN ] LoggerTest.LevelFilteringWorks 18: [ OK ] LoggerTest.LevelFilteringWorks (1 ms) 18: [ RUN ] LoggerTest.LogsToMultipleStreams 18: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 18: [----------] 5 tests from LoggerTest (2 ms total) 18: 18: [----------] 4 tests from MutexBasicTest 18: [ RUN ] MutexBasicTest.CanBeMade 18: [ OK ] MutexBasicTest.CanBeMade (0 ms) 18: [ RUN ] MutexBasicTest.CanBeLocked 18: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 18: [ RUN ] MutexBasicTest.CanBeTryLocked 18: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 18: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 18: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 18: [----------] 4 tests from MutexBasicTest (0 ms total) 18: 18: [----------] 3 tests from MutexTaskTest 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (0 ms) 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 18: [----------] 3 tests from MutexTaskTest (0 ms total) 18: 18: [----------] 2 tests from PathTest 18: [ RUN ] PathTest.StripSourcePrefixWorks 18: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 18: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 18: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 18: [----------] 2 tests from PathTest (0 ms total) 18: 18: [----------] 7 tests from StringUtilityTest 18: [ RUN ] StringUtilityTest.StartsWith 18: [ OK ] StringUtilityTest.StartsWith (0 ms) 18: [ RUN ] StringUtilityTest.EndsWith 18: [ OK ] StringUtilityTest.EndsWith (0 ms) 18: [ RUN ] StringUtilityTest.StripSuffixIfPresent 18: [ OK ] StringUtilityTest.StripSuffixIfPresent (1 ms) 18: [ RUN ] StringUtilityTest.StripString 18: [ OK ] StringUtilityTest.StripString (0 ms) 18: [ RUN ] StringUtilityTest.SplitString 18: [ OK ] StringUtilityTest.SplitString (0 ms) 18: [ RUN ] StringUtilityTest.SplitDelimitedString 18: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 18: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 18: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (0 ms) 18: [----------] 7 tests from StringUtilityTest (1 ms total) 18: 18: [----------] 2 tests from FormatStringTest 18: [ RUN ] FormatStringTest.HandlesBasicFormatting 18: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 18: [ RUN ] FormatStringTest.HandlesLongStrings 18: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 18: [----------] 2 tests from FormatStringTest (0 ms total) 18: 18: [----------] 1 test from StringFormatterTest 18: [ RUN ] StringFormatterTest.HandlesBasicFormatting 18: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 18: [----------] 1 test from StringFormatterTest (0 ms total) 18: 18: [----------] 1 test from formatAndJoinTest 18: [ RUN ] formatAndJoinTest.Works 18: [ OK ] formatAndJoinTest.Works (0 ms) 18: [----------] 1 test from formatAndJoinTest (0 ms total) 18: 18: [----------] 1 test from JoinStringsTest 18: [ RUN ] JoinStringsTest.Works 18: [ OK ] JoinStringsTest.Works (0 ms) 18: [----------] 1 test from JoinStringsTest (0 ms total) 18: 18: [----------] 6 tests from ReplaceAllTest 18: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 18: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesNoMatches 18: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 18: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (1 ms) 18: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 18: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 18: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 18: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 18: [----------] 6 tests from ReplaceAllTest (1 ms total) 18: 18: [----------] 10 tests from TextLineWrapperTest 18: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 18: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 18: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 18: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectly 18: [ OK ] TextLineWrapperTest.WrapsCorrectly (0 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 18: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesIndent 18: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 18: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 18: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 18: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 18: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 18: [----------] 10 tests from TextLineWrapperTest (1 ms total) 18: 18: [----------] 6 tests from TextWriterTest 18: [ RUN ] TextWriterTest.WritesLines 18: [ OK ] TextWriterTest.WritesLines (0 ms) 18: [ RUN ] TextWriterTest.WritesLinesInParts 18: [ OK ] TextWriterTest.WritesLinesInParts (0 ms) 18: [ RUN ] TextWriterTest.WritesWrappedLines 18: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 18: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 18: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 18: [ RUN ] TextWriterTest.TracksNewlines 18: [ OK ] TextWriterTest.TracksNewlines (0 ms) 18: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 18: [ OK ] TextWriterTest.PreservesTrailingWhitespace (1 ms) 18: [----------] 6 tests from TextWriterTest (1 ms total) 18: 18: [----------] 1 test from TypeTraitsTest 18: [ RUN ] TypeTraitsTest.IsIntegralConstant 18: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 18: [----------] 1 test from TypeTraitsTest (0 ms total) 18: 18: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 18: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 18: 18: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 18: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 18: 18: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 18: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (0 ms total) 18: 18: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (1 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 18: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 18: 18: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (1 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 18: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 307 tests from 49 test cases ran. (15 ms total) 18: [ PASSED ] 307 tests. 18/23 Test #18: UtilityUnitTests ................. Passed 0.19 sec test 19 Start 19: FileIOTests 19: Test command: /<>/build/openmpi/bin/fileio-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/FileIOTests.xml" 19: Test timeout computed to be: 30 19: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 19: [==========] Running 15 tests from 3 test cases. 19: [----------] Global test environment set-up. 19: [----------] 9 tests from ReadTest 19: [ RUN ] ReadTest.get_eint_ReadsInteger 19: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side '0.8' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 19: [ RUN ] ReadTest.get_eint_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 19: [ RUN ] ReadTest.get_eint64_ReadsInteger 19: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side '0.8' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 19: [ RUN ] ReadTest.get_eint64_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 19: [ RUN ] ReadTest.get_ereal_ReadsInteger 19: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_ereal_ReadsFloat 19: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 19: [ RUN ] ReadTest.get_ereal_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not a 19: real value 19: 19: 19: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 19: [----------] 9 tests from ReadTest (0 ms total) 19: 19: [----------] 2 tests from TngTest 19: [ RUN ] TngTest.CanOpenTngFile 19: [ OK ] TngTest.CanOpenTngFile (0 ms) 19: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 19: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 19: [----------] 2 tests from TngTest (0 ms total) 19: 19: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (2 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) 19: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (8 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 15 tests from 3 test cases ran. (8 ms total) 19: [ PASSED ] 15 tests. 19/23 Test #19: FileIOTests ...................... Passed 0.17 sec test 20 Start 20: PullTest 20: Test command: /<>/build/openmpi/bin/pull-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/PullTest.xml" 20: Test timeout computed to be: 30 20: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 20: [==========] Running 5 tests from 1 test case. 20: [----------] Global test environment set-up. 20: [----------] 5 tests from PullTest 20: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 20: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 20: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 20: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 20: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 20: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 20: [----------] 5 tests from PullTest (0 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 5 tests from 1 test case ran. (0 ms total) 20: [ PASSED ] 5 tests. 20/23 Test #20: PullTest ......................... Passed 0.17 sec test 21 Start 21: AwhTest 21: Test command: /<>/build/openmpi/bin/awh-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/AwhTest.xml" 21: Test timeout computed to be: 30 21: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 21: [==========] Running 12 tests from 4 test cases. 21: [----------] Global test environment set-up. 21: [----------] 1 test from BiasTest 21: [ RUN ] BiasTest.DetectsCovering 21: [ OK ] BiasTest.DetectsCovering (1 ms) 21: [----------] 1 test from BiasTest (1 ms total) 21: 21: [----------] 1 test from gridTest 21: [ RUN ] gridTest.neighborhood 21: [ OK ] gridTest.neighborhood (8 ms) 21: [----------] 1 test from gridTest (9 ms total) 21: 21: [----------] 8 tests from WithParameters/BiasTest 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) 21: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 21: 21: [----------] 2 tests from WithParameters/BiasStateTest 21: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 21: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 21: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 21: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 21: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 12 tests from 4 test cases ran. (16 ms total) 21: [ PASSED ] 12 tests. 21/23 Test #21: AwhTest .......................... Passed 0.18 sec test 22 Start 22: SimdUnitTests 22: Test command: /<>/build/openmpi/bin/simd-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/SimdUnitTests.xml" 22: Test timeout computed to be: 30 22: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 22: [==========] Running 277 tests from 22 test cases. 22: [----------] Global test environment set-up. 22: [----------] 9 tests from SimdBootstrapTest 22: [ RUN ] SimdBootstrapTest.loadStore 22: [ OK ] SimdBootstrapTest.loadStore (0 ms) 22: [ RUN ] SimdBootstrapTest.loadU 22: [ OK ] SimdBootstrapTest.loadU (0 ms) 22: [ RUN ] SimdBootstrapTest.storeU 22: [ OK ] SimdBootstrapTest.storeU (0 ms) 22: [ RUN ] SimdBootstrapTest.loadStoreI 22: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 22: [ RUN ] SimdBootstrapTest.loadUI 22: [ OK ] SimdBootstrapTest.loadUI (0 ms) 22: [ RUN ] SimdBootstrapTest.storeUI 22: [ OK ] SimdBootstrapTest.storeUI (0 ms) 22: [ RUN ] SimdBootstrapTest.simd4LoadStore 22: [ OK ] SimdBootstrapTest.simd4LoadStore (0 ms) 22: [ RUN ] SimdBootstrapTest.simd4LoadU 22: [ OK ] SimdBootstrapTest.simd4LoadU (0 ms) 22: [ RUN ] SimdBootstrapTest.simd4StoreU 22: [ OK ] SimdBootstrapTest.simd4StoreU (0 ms) 22: [----------] 9 tests from SimdBootstrapTest (0 ms total) 22: 22: [----------] 1 test from SimdTest 22: [ RUN ] SimdTest.GmxAligned 22: [ OK ] SimdTest.GmxAligned (0 ms) 22: [----------] 1 test from SimdTest (0 ms total) 22: 22: [----------] 42 tests from SimdFloatingpointTest 22: [ RUN ] SimdFloatingpointTest.setZero 22: [ OK ] SimdFloatingpointTest.setZero (0 ms) 22: [ RUN ] SimdFloatingpointTest.set 22: [ OK ] SimdFloatingpointTest.set (0 ms) 22: [ RUN ] SimdFloatingpointTest.add 22: [ OK ] SimdFloatingpointTest.add (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskAdd 22: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 22: [ RUN ] SimdFloatingpointTest.sub 22: [ OK ] SimdFloatingpointTest.sub (0 ms) 22: [ RUN ] SimdFloatingpointTest.mul 22: [ OK ] SimdFloatingpointTest.mul (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzMul 22: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 22: [ RUN ] SimdFloatingpointTest.fma 22: [ OK ] SimdFloatingpointTest.fma (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzFma 22: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 22: [ RUN ] SimdFloatingpointTest.fms 22: [ OK ] SimdFloatingpointTest.fms (0 ms) 22: [ RUN ] SimdFloatingpointTest.fnma 22: [ OK ] SimdFloatingpointTest.fnma (0 ms) 22: [ RUN ] SimdFloatingpointTest.fnms 22: [ OK ] SimdFloatingpointTest.fnms (0 ms) 22: [ RUN ] SimdFloatingpointTest.abs 22: [ OK ] SimdFloatingpointTest.abs (0 ms) 22: [ RUN ] SimdFloatingpointTest.neg 22: [ OK ] SimdFloatingpointTest.neg (0 ms) 22: [ RUN ] SimdFloatingpointTest.and 22: [ OK ] SimdFloatingpointTest.and (0 ms) 22: [ RUN ] SimdFloatingpointTest.or 22: [ OK ] SimdFloatingpointTest.or (0 ms) 22: [ RUN ] SimdFloatingpointTest.xor 22: [ OK ] SimdFloatingpointTest.xor (0 ms) 22: [ RUN ] SimdFloatingpointTest.andNot 22: [ OK ] SimdFloatingpointTest.andNot (0 ms) 22: [ RUN ] SimdFloatingpointTest.max 22: [ OK ] SimdFloatingpointTest.max (0 ms) 22: [ RUN ] SimdFloatingpointTest.min 22: [ OK ] SimdFloatingpointTest.min (0 ms) 22: [ RUN ] SimdFloatingpointTest.round 22: [ OK ] SimdFloatingpointTest.round (0 ms) 22: [ RUN ] SimdFloatingpointTest.roundMode 22: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 22: [ RUN ] SimdFloatingpointTest.trunc 22: [ OK ] SimdFloatingpointTest.trunc (0 ms) 22: [ RUN ] SimdFloatingpointTest.frexp 22: [ OK ] SimdFloatingpointTest.frexp (0 ms) 22: [ RUN ] SimdFloatingpointTest.ldexp 22: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 22: [ RUN ] SimdFloatingpointTest.rsqrt 22: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzRsqrt 22: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 22: [ RUN ] SimdFloatingpointTest.rcp 22: [ OK ] SimdFloatingpointTest.rcp (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzRcp 22: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 22: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 22: [ RUN ] SimdFloatingpointTest.selectByNotMask 22: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpNe 22: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpLe 22: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpLt 22: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 22: [ RUN ] SimdFloatingpointTest.testBits 22: [ OK ] SimdFloatingpointTest.testBits (0 ms) 22: [ RUN ] SimdFloatingpointTest.andB 22: [ OK ] SimdFloatingpointTest.andB (0 ms) 22: [ RUN ] SimdFloatingpointTest.orB 22: [ OK ] SimdFloatingpointTest.orB (0 ms) 22: [ RUN ] SimdFloatingpointTest.anyTrueB 22: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 22: [ RUN ] SimdFloatingpointTest.blend 22: [ OK ] SimdFloatingpointTest.blend (0 ms) 22: [ RUN ] SimdFloatingpointTest.reduce 22: [ OK ] SimdFloatingpointTest.reduce (0 ms) 22: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 22: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 22: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 22: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 22: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 22: 22: [----------] 16 tests from SimdFloatingpointUtilTest 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 22: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 22: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.loadUNDuplicate4 22: [ OK ] SimdFloatingpointUtilTest.loadUNDuplicate4 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.load4DuplicateN 22: [ OK ] SimdFloatingpointUtilTest.load4DuplicateN (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.loadU4NOffset 22: [ OK ] SimdFloatingpointUtilTest.loadU4NOffset (0 ms) 22: [----------] 16 tests from SimdFloatingpointUtilTest (0 ms total) 22: 22: [----------] 3 tests from SimdVectorOperationsTest 22: [ RUN ] SimdVectorOperationsTest.iprod 22: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 22: [ RUN ] SimdVectorOperationsTest.norm2 22: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 22: [ RUN ] SimdVectorOperationsTest.cprod 22: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 22: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 22: 22: [----------] 45 tests from SimdMathTest 22: [ RUN ] SimdMathTest.copysign 22: [ OK ] SimdMathTest.copysign (0 ms) 22: [ RUN ] SimdMathTest.invsqrt 22: [ OK ] SimdMathTest.invsqrt (1 ms) 22: [ RUN ] SimdMathTest.maskzInvsqrt 22: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 22: [ RUN ] SimdMathTest.invsqrtPair 22: [ OK ] SimdMathTest.invsqrtPair (1 ms) 22: [ RUN ] SimdMathTest.sqrt 22: [ OK ] SimdMathTest.sqrt (0 ms) 22: [ RUN ] SimdMathTest.sqrtUnsafe 22: [ OK ] SimdMathTest.sqrtUnsafe (0 ms) 22: [ RUN ] SimdMathTest.inv 22: [ OK ] SimdMathTest.inv (1 ms) 22: [ RUN ] SimdMathTest.maskzInv 22: [ OK ] SimdMathTest.maskzInv (0 ms) 22: [ RUN ] SimdMathTest.log 22: [ OK ] SimdMathTest.log (1 ms) 22: [ RUN ] SimdMathTest.exp2 22: [ OK ] SimdMathTest.exp2 (1 ms) 22: [ RUN ] SimdMathTest.exp2Unsafe 22: [ OK ] SimdMathTest.exp2Unsafe (0 ms) 22: [ RUN ] SimdMathTest.exp 22: [ OK ] SimdMathTest.exp (2 ms) 22: [ RUN ] SimdMathTest.expUnsafe 22: [ OK ] SimdMathTest.expUnsafe (1 ms) 22: [ RUN ] SimdMathTest.erf 22: [ OK ] SimdMathTest.erf (2 ms) 22: [ RUN ] SimdMathTest.erfc 22: [ OK ] SimdMathTest.erfc (2 ms) 22: [ RUN ] SimdMathTest.sin 22: [ OK ] SimdMathTest.sin (1 ms) 22: [ RUN ] SimdMathTest.cos 22: [ OK ] SimdMathTest.cos (2 ms) 22: [ RUN ] SimdMathTest.tan 22: [ OK ] SimdMathTest.tan (10 ms) 22: [ RUN ] SimdMathTest.asin 22: [ OK ] SimdMathTest.asin (0 ms) 22: [ RUN ] SimdMathTest.acos 22: [ OK ] SimdMathTest.acos (1 ms) 22: [ RUN ] SimdMathTest.atan 22: [ OK ] SimdMathTest.atan (1 ms) 22: [ RUN ] SimdMathTest.atan2 22: [ OK ] SimdMathTest.atan2 (0 ms) 22: [ RUN ] SimdMathTest.pmeForceCorrection 22: [ OK ] SimdMathTest.pmeForceCorrection (2 ms) 22: [ RUN ] SimdMathTest.pmePotentialCorrection 22: [ OK ] SimdMathTest.pmePotentialCorrection (1 ms) 22: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 22: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 22: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.sqrtSingleAccuracy 22: [ OK ] SimdMathTest.sqrtSingleAccuracy (0 ms) 22: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 22: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (0 ms) 22: [ RUN ] SimdMathTest.invSingleAccuracy 22: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.logSingleAccuracy 22: [ OK ] SimdMathTest.logSingleAccuracy (0 ms) 22: [ RUN ] SimdMathTest.exp2SingleAccuracy 22: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 22: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (0 ms) 22: [ RUN ] SimdMathTest.expSingleAccuracy 22: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 22: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (0 ms) 22: [ RUN ] SimdMathTest.erfSingleAccuracy 22: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.erfcSingleAccuracy 22: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.sinSingleAccuracy 22: [ OK ] SimdMathTest.sinSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.cosSingleAccuracy 22: [ OK ] SimdMathTest.cosSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.tanSingleAccuracy 22: [ OK ] SimdMathTest.tanSingleAccuracy (10 ms) 22: [ RUN ] SimdMathTest.asinSingleAccuracy 22: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.acosSingleAccuracy 22: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.atanSingleAccuracy 22: [ OK ] SimdMathTest.atanSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.atan2SingleAccuracy 22: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 22: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 22: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 22: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 22: [----------] 45 tests from SimdMathTest (65 ms total) 22: 22: [----------] 1 test from EmptyArrayRefTest 22: [ RUN ] EmptyArrayRefTest.IsEmpty 22: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 22: [----------] 1 test from EmptyArrayRefTest (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 22: 22: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefReadWriteTest/0.Assignment 22: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 22: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 22: 22: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefReadWriteTest/1.Assignment 22: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 22: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 22: 22: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefArithmeticTest/0.Basic 22: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 22: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 22: 22: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefArithmeticTest/1.Basic 22: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 22: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 22: 22: [----------] 23 tests from SimdIntegerTest 22: [ RUN ] SimdIntegerTest.setZero 22: [ OK ] SimdIntegerTest.setZero (0 ms) 22: [ RUN ] SimdIntegerTest.set 22: [ OK ] SimdIntegerTest.set (0 ms) 22: [ RUN ] SimdIntegerTest.add 22: [ OK ] SimdIntegerTest.add (0 ms) 22: [ RUN ] SimdIntegerTest.sub 22: [ OK ] SimdIntegerTest.sub (0 ms) 22: [ RUN ] SimdIntegerTest.mul 22: [ OK ] SimdIntegerTest.mul (0 ms) 22: [ RUN ] SimdIntegerTest.and 22: [ OK ] SimdIntegerTest.and (0 ms) 22: [ RUN ] SimdIntegerTest.andNot 22: [ OK ] SimdIntegerTest.andNot (0 ms) 22: [ RUN ] SimdIntegerTest.or 22: [ OK ] SimdIntegerTest.or (0 ms) 22: [ RUN ] SimdIntegerTest.xor 22: [ OK ] SimdIntegerTest.xor (0 ms) 22: [ RUN ] SimdIntegerTest.extract 22: [ OK ] SimdIntegerTest.extract (0 ms) 22: [ RUN ] SimdIntegerTest.cvtR2I 22: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 22: [ RUN ] SimdIntegerTest.cvttR2I 22: [ OK ] SimdIntegerTest.cvttR2I (0 ms) 22: [ RUN ] SimdIntegerTest.cvtI2R 22: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 22: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 22: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 22: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 22: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 22: [ RUN ] SimdIntegerTest.cmpLt 22: [ OK ] SimdIntegerTest.cmpLt (0 ms) 22: [ RUN ] SimdIntegerTest.testBits 22: [ OK ] SimdIntegerTest.testBits (0 ms) 22: [ RUN ] SimdIntegerTest.andB 22: [ OK ] SimdIntegerTest.andB (0 ms) 22: [ RUN ] SimdIntegerTest.orB 22: [ OK ] SimdIntegerTest.orB (0 ms) 22: [ RUN ] SimdIntegerTest.anyTrue 22: [ OK ] SimdIntegerTest.anyTrue (0 ms) 22: [ RUN ] SimdIntegerTest.blend 22: [ OK ] SimdIntegerTest.blend (0 ms) 22: [ RUN ] SimdIntegerTest.cvtB2IB 22: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 22: [ RUN ] SimdIntegerTest.cvtIB2B 22: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 22: [----------] 23 tests from SimdIntegerTest (1 ms total) 22: 22: [----------] 32 tests from Simd4FloatingpointTest 22: [ RUN ] Simd4FloatingpointTest.setZero 22: [ OK ] Simd4FloatingpointTest.setZero (0 ms) 22: [ RUN ] Simd4FloatingpointTest.set 22: [ OK ] Simd4FloatingpointTest.set (0 ms) 22: [ RUN ] Simd4FloatingpointTest.add 22: [ OK ] Simd4FloatingpointTest.add (0 ms) 22: [ RUN ] Simd4FloatingpointTest.sub 22: [ OK ] Simd4FloatingpointTest.sub (0 ms) 22: [ RUN ] Simd4FloatingpointTest.mul 22: [ OK ] Simd4FloatingpointTest.mul (0 ms) 22: [ RUN ] Simd4FloatingpointTest.fma 22: [ OK ] Simd4FloatingpointTest.fma (0 ms) 22: [ RUN ] Simd4FloatingpointTest.fms 22: [ OK ] Simd4FloatingpointTest.fms (0 ms) 22: [ RUN ] Simd4FloatingpointTest.fnma 22: [ OK ] Simd4FloatingpointTest.fnma (0 ms) 22: [ RUN ] Simd4FloatingpointTest.fnms 22: [ OK ] Simd4FloatingpointTest.fnms (0 ms) 22: [ RUN ] Simd4FloatingpointTest.abs 22: [ OK ] Simd4FloatingpointTest.abs (0 ms) 22: [ RUN ] Simd4FloatingpointTest.neg 22: [ OK ] Simd4FloatingpointTest.neg (0 ms) 22: [ RUN ] Simd4FloatingpointTest.and 22: [ OK ] Simd4FloatingpointTest.and (0 ms) 22: [ RUN ] Simd4FloatingpointTest.or 22: [ OK ] Simd4FloatingpointTest.or (0 ms) 22: [ RUN ] Simd4FloatingpointTest.xor 22: [ OK ] Simd4FloatingpointTest.xor (0 ms) 22: [ RUN ] Simd4FloatingpointTest.andNot 22: [ OK ] Simd4FloatingpointTest.andNot (0 ms) 22: [ RUN ] Simd4FloatingpointTest.max 22: [ OK ] Simd4FloatingpointTest.max (0 ms) 22: [ RUN ] Simd4FloatingpointTest.min 22: [ OK ] Simd4FloatingpointTest.min (0 ms) 22: [ RUN ] Simd4FloatingpointTest.round 22: [ OK ] Simd4FloatingpointTest.round (0 ms) 22: [ RUN ] Simd4FloatingpointTest.trunc 22: [ OK ] Simd4FloatingpointTest.trunc (0 ms) 22: [ RUN ] Simd4FloatingpointTest.gmxSimd4RsqrtR 22: [ OK ] Simd4FloatingpointTest.gmxSimd4RsqrtR (0 ms) 22: [ RUN ] Simd4FloatingpointTest.cmpEqAndSelectByMask 22: [ OK ] Simd4FloatingpointTest.cmpEqAndSelectByMask (0 ms) 22: [ RUN ] Simd4FloatingpointTest.selectByNotMask 22: [ OK ] Simd4FloatingpointTest.selectByNotMask (0 ms) 22: [ RUN ] Simd4FloatingpointTest.cmpNe 22: [ OK ] Simd4FloatingpointTest.cmpNe (0 ms) 22: [ RUN ] Simd4FloatingpointTest.cmpLe 22: [ OK ] Simd4FloatingpointTest.cmpLe (0 ms) 22: [ RUN ] Simd4FloatingpointTest.cmpLt 22: [ OK ] Simd4FloatingpointTest.cmpLt (0 ms) 22: [ RUN ] Simd4FloatingpointTest.andB 22: [ OK ] Simd4FloatingpointTest.andB (0 ms) 22: [ RUN ] Simd4FloatingpointTest.orB 22: [ OK ] Simd4FloatingpointTest.orB (0 ms) 22: [ RUN ] Simd4FloatingpointTest.anyTrue 22: [ OK ] Simd4FloatingpointTest.anyTrue (0 ms) 22: [ RUN ] Simd4FloatingpointTest.blend 22: [ OK ] Simd4FloatingpointTest.blend (0 ms) 22: [ RUN ] Simd4FloatingpointTest.reduce 22: [ OK ] Simd4FloatingpointTest.reduce (0 ms) 22: [ RUN ] Simd4FloatingpointTest.dotProduct 22: [ OK ] Simd4FloatingpointTest.dotProduct (0 ms) 22: [ RUN ] Simd4FloatingpointTest.transpose 22: [ OK ] Simd4FloatingpointTest.transpose (0 ms) 22: [----------] 32 tests from Simd4FloatingpointTest (0 ms total) 22: 22: [----------] 1 test from Simd4VectorOperationsTest 22: [ RUN ] Simd4VectorOperationsTest.norm2 22: [ OK ] Simd4VectorOperationsTest.norm2 (0 ms) 22: [----------] 1 test from Simd4VectorOperationsTest (0 ms total) 22: 22: [----------] 2 tests from Simd4MathTest 22: [ RUN ] Simd4MathTest.invsqrt 22: [ OK ] Simd4MathTest.invsqrt (1 ms) 22: [ RUN ] Simd4MathTest.invsqrtSingleaccuracy 22: [ OK ] Simd4MathTest.invsqrtSingleaccuracy (0 ms) 22: [----------] 2 tests from Simd4MathTest (1 ms total) 22: 22: [----------] 41 tests from SimdScalarTest 22: [ RUN ] SimdScalarTest.load 22: [ OK ] SimdScalarTest.load (0 ms) 22: [ RUN ] SimdScalarTest.loadU 22: [ OK ] SimdScalarTest.loadU (0 ms) 22: [ RUN ] SimdScalarTest.store 22: [ OK ] SimdScalarTest.store (0 ms) 22: [ RUN ] SimdScalarTest.storeU 22: [ OK ] SimdScalarTest.storeU (0 ms) 22: [ RUN ] SimdScalarTest.setZero 22: [ OK ] SimdScalarTest.setZero (0 ms) 22: [ RUN ] SimdScalarTest.andNot 22: [ OK ] SimdScalarTest.andNot (0 ms) 22: [ RUN ] SimdScalarTest.fma 22: [ OK ] SimdScalarTest.fma (0 ms) 22: [ RUN ] SimdScalarTest.fms 22: [ OK ] SimdScalarTest.fms (0 ms) 22: [ RUN ] SimdScalarTest.fnma 22: [ OK ] SimdScalarTest.fnma (0 ms) 22: [ RUN ] SimdScalarTest.fnms 22: [ OK ] SimdScalarTest.fnms (0 ms) 22: [ RUN ] SimdScalarTest.maskAdd 22: [ OK ] SimdScalarTest.maskAdd (0 ms) 22: [ RUN ] SimdScalarTest.maskzMul 22: [ OK ] SimdScalarTest.maskzMul (0 ms) 22: [ RUN ] SimdScalarTest.maskzFma 22: [ OK ] SimdScalarTest.maskzFma (0 ms) 22: [ RUN ] SimdScalarTest.abs 22: [ OK ] SimdScalarTest.abs (0 ms) 22: [ RUN ] SimdScalarTest.max 22: [ OK ] SimdScalarTest.max (0 ms) 22: [ RUN ] SimdScalarTest.min 22: [ OK ] SimdScalarTest.min (0 ms) 22: [ RUN ] SimdScalarTest.round 22: [ OK ] SimdScalarTest.round (0 ms) 22: [ RUN ] SimdScalarTest.trunc 22: [ OK ] SimdScalarTest.trunc (0 ms) 22: [ RUN ] SimdScalarTest.reduce 22: [ OK ] SimdScalarTest.reduce (0 ms) 22: [ RUN ] SimdScalarTest.testBits 22: [ OK ] SimdScalarTest.testBits (0 ms) 22: [ RUN ] SimdScalarTest.anyTrue 22: [ OK ] SimdScalarTest.anyTrue (0 ms) 22: [ RUN ] SimdScalarTest.selectByMask 22: [ OK ] SimdScalarTest.selectByMask (0 ms) 22: [ RUN ] SimdScalarTest.selectByNotMask 22: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 22: [ RUN ] SimdScalarTest.blend 22: [ OK ] SimdScalarTest.blend (0 ms) 22: [ RUN ] SimdScalarTest.cvtR2I 22: [ OK ] SimdScalarTest.cvtR2I (0 ms) 22: [ RUN ] SimdScalarTest.cvttR2I 22: [ OK ] SimdScalarTest.cvttR2I (0 ms) 22: [ RUN ] SimdScalarTest.cvtI2R 22: [ OK ] SimdScalarTest.cvtI2R (0 ms) 22: [ RUN ] SimdScalarTest.cvtF2D 22: [ OK ] SimdScalarTest.cvtF2D (0 ms) 22: [ RUN ] SimdScalarTest.cvtD2D 22: [ OK ] SimdScalarTest.cvtD2D (0 ms) 22: [ RUN ] SimdScalarTest.loadI 22: [ OK ] SimdScalarTest.loadI (0 ms) 22: [ RUN ] SimdScalarTest.loadUI 22: [ OK ] SimdScalarTest.loadUI (0 ms) 22: [ RUN ] SimdScalarTest.storeI 22: [ OK ] SimdScalarTest.storeI (0 ms) 22: [ RUN ] SimdScalarTest.storeUI 22: [ OK ] SimdScalarTest.storeUI (0 ms) 22: [ RUN ] SimdScalarTest.andNotI 22: [ OK ] SimdScalarTest.andNotI (0 ms) 22: [ RUN ] SimdScalarTest.testBitsI 22: [ OK ] SimdScalarTest.testBitsI (0 ms) 22: [ RUN ] SimdScalarTest.selectByMaskI 22: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 22: [ RUN ] SimdScalarTest.selectByNotMaskI 22: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 22: [ RUN ] SimdScalarTest.blendI 22: [ OK ] SimdScalarTest.blendI (0 ms) 22: [ RUN ] SimdScalarTest.cvtB2IB 22: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 22: [ RUN ] SimdScalarTest.cvtIB2B 22: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 22: [ RUN ] SimdScalarTest.expandScalarsToTriplets 22: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 22: [----------] 41 tests from SimdScalarTest (1 ms total) 22: 22: [----------] 8 tests from SimdScalarUtilTest 22: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 22: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 22: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 22: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 22: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 22: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 22: 22: [----------] 37 tests from SimdScalarMathTest 22: [ RUN ] SimdScalarMathTest.copysign 22: [ OK ] SimdScalarMathTest.copysign (0 ms) 22: [ RUN ] SimdScalarMathTest.invsqrtPair 22: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 22: [ RUN ] SimdScalarMathTest.inv 22: [ OK ] SimdScalarMathTest.inv (0 ms) 22: [ RUN ] SimdScalarMathTest.maskzInvsqrt 22: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 22: [ RUN ] SimdScalarMathTest.log 22: [ OK ] SimdScalarMathTest.log (0 ms) 22: [ RUN ] SimdScalarMathTest.exp2 22: [ OK ] SimdScalarMathTest.exp2 (0 ms) 22: [ RUN ] SimdScalarMathTest.exp 22: [ OK ] SimdScalarMathTest.exp (0 ms) 22: [ RUN ] SimdScalarMathTest.erf 22: [ OK ] SimdScalarMathTest.erf (0 ms) 22: [ RUN ] SimdScalarMathTest.erfc 22: [ OK ] SimdScalarMathTest.erfc (0 ms) 22: [ RUN ] SimdScalarMathTest.sincos 22: [ OK ] SimdScalarMathTest.sincos (0 ms) 22: [ RUN ] SimdScalarMathTest.sin 22: [ OK ] SimdScalarMathTest.sin (0 ms) 22: [ RUN ] SimdScalarMathTest.cos 22: [ OK ] SimdScalarMathTest.cos (0 ms) 22: [ RUN ] SimdScalarMathTest.tan 22: [ OK ] SimdScalarMathTest.tan (0 ms) 22: [ RUN ] SimdScalarMathTest.asin 22: [ OK ] SimdScalarMathTest.asin (0 ms) 22: [ RUN ] SimdScalarMathTest.acos 22: [ OK ] SimdScalarMathTest.acos (0 ms) 22: [ RUN ] SimdScalarMathTest.atan 22: [ OK ] SimdScalarMathTest.atan (0 ms) 22: [ RUN ] SimdScalarMathTest.atan2 22: [ OK ] SimdScalarMathTest.atan2 (0 ms) 22: [ RUN ] SimdScalarMathTest.pmeForceCorrection 22: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 22: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 22: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 22: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 22: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.invSingleAccuracy 22: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 22: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.logSingleAccuracy 22: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 22: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.expSingleAccuracy 22: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 22: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 22: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 22: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 22: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 22: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 22: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 22: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 22: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 22: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 22: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 22: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 22: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 22: [----------] 37 tests from SimdScalarMathTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 277 tests from 22 test cases ran. (70 ms total) 22: [ PASSED ] 277 tests. 22/23 Test #22: SimdUnitTests .................... Passed 0.25 sec test 23 Start 23: CompatibilityHelpersTests 23: Test command: /<>/build/openmpi/bin/compat-test "--gtest_output=xml:/<>/build/openmpi/Testing/Temporary/CompatibilityHelpersTests.xml" 23: Test timeout computed to be: 30 23: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 23: [==========] Running 1 test from 1 test case. 23: [----------] Global test environment set-up. 23: [----------] 1 test from CompatibilityHelper 23: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 23: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 23: [----------] 1 test from CompatibilityHelper (0 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 1 test from 1 test case ran. (0 ms total) 23: [ PASSED ] 1 test. 23/23 Test #23: CompatibilityHelpersTests ........ Passed 0.18 sec The following tests passed: TestUtilsUnitTests TestUtilsMpiUnitTests MdlibUnitTest AppliedForcesUnitTest ListedForcesTest CommandLineUnitTests EwaldUnitTests FFTUnitTests GpuUtilsUnitTests HardwareUnitTests MathUnitTests MdrunUtilityUnitTests OnlineHelpUnitTests OptionsUnitTests RandomUnitTests TableUnitTests TaskAssignmentUnitTests UtilityUnitTests FileIOTests PullTest AwhTest SimdUnitTests CompatibilityHelpersTests 100% tests passed, 0 tests failed out of 23 Label Time Summary: GTest = 4.83 sec*proc (23 tests) MpiTest = 0.19 sec*proc (1 test) UnitTest = 4.83 sec*proc (23 tests) Total Test time (real) = 5.25 sec /usr/bin/make -j4 -C build/openmpi-dp tests make[1]: Entering directory '/<>/build/openmpi-dp' /usr/bin/cmake -H/<> -B/<>/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/make -f CMakeFiles/Makefile2 tests make[2]: Entering directory '/<>/build/openmpi-dp' /usr/bin/cmake -H/<> -B/<>/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles 98 /usr/bin/make -f CMakeFiles/Makefile2 CMakeFiles/tests.dir/all make[3]: Entering directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/depend /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/depend /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/external/gmock-1.7.0 /<>/build/openmpi-dp /<>/build/openmpi-dp/src/external/gmock-1.7.0 /<>/build/openmpi-dp/src/external/gmock-1.7.0/CMakeFiles/gmock.dir/DependInfo.cmake --color= cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[4]: Leaving directory '/<>/build/openmpi-dp' Scanning dependencies of target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/build Scanning dependencies of target gmock make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Leaving directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -c /<>/src/gromacs/onlinehelp/tests/mock_helptopic.cpp /usr/bin/make -f src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build.make src/external/gmock-1.7.0/CMakeFiles/gmock.dir/build Scanning dependencies of target mdrunutility-test-shared [ 3%] Built target tng_io_obj make[4]: Entering directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend cd /<>/build/openmpi-dp/src/external/gmock-1.7.0 && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gmock.dir/src/gmock-all.cc.o -c /<>/src/external/gmock-1.7.0/src/gmock-all.cc make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test-shared.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinitytest.cpp make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[4]: Leaving directory '/<>/build/openmpi-dp' [ 80%] Built target libgromacs cd /<>/build/openmpi-dp/src/external/gmock-1.7.0 && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_CAN_STREAM_RESULTS=0 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -D_GNU_SOURCE=1 -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/gmock-1.7.0/gtest -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -Wno-unused-variable -o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o -c /<>/src/external/gmock-1.7.0/gtest/src/gtest-all.cc make[4]: Leaving directory '/<>/build/openmpi-dp' [ 80%] Built target onlinehelp-test-shared make[4]: Leaving directory '/<>/build/openmpi-dp' [ 81%] Built target mdrunutility-test-shared cd /<>/build/openmpi-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -P CMakeFiles/gmock.dir/cmake_clean_target.cmake cd /<>/build/openmpi-dp/src/external/gmock-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gmock.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libgmock.a CMakeFiles/gmock.dir/src/gmock-all.cc.o CMakeFiles/gmock.dir/gtest/src/gtest-all.cc.o /usr/bin/ranlib ../../../lib/libgmock.a make[4]: Leaving directory '/<>/build/openmpi-dp' [ 81%] Built target gmock /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils /<>/build/openmpi-dp /<>/build/openmpi-dp/src/testutils /<>/build/openmpi-dp/src/testutils/CMakeFiles/testutils.dir/DependInfo.cmake --color= Scanning dependencies of target testutils make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/testutils/CMakeFiles/testutils.dir/build.make src/testutils/CMakeFiles/testutils.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/cmdlinetest.cpp.o -c /<>/src/testutils/cmdlinetest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/conftest.cpp.o -c /<>/src/testutils/conftest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/filematchers.cpp.o -c /<>/src/testutils/filematchers.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/interactivetest.cpp.o -c /<>/src/testutils/interactivetest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/loggertest.cpp.o -c /<>/src/testutils/loggertest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpi-printer.cpp.o -c /<>/src/testutils/mpi-printer.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/mpitest.cpp.o -c /<>/src/testutils/mpitest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata.cpp.o -c /<>/src/testutils/refdata.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/refdata-xml.cpp.o -c /<>/src/testutils/refdata-xml.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stdiohelper.cpp.o -c /<>/src/testutils/stdiohelper.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/stringtest.cpp.o -c /<>/src/testutils/stringtest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testasserts.cpp.o -c /<>/src/testutils/testasserts.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfilemanager.cpp.o -c /<>/src/testutils/testfilemanager.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testfileredirector.cpp.o -c /<>/src/testutils/testfileredirector.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testinit.cpp.o -c /<>/src/testutils/testinit.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/testoptions.cpp.o -c /<>/src/testutils/testoptions.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/textblockmatchers.cpp.o -c /<>/src/testutils/textblockmatchers.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/xvgtest.cpp.o -c /<>/src/testutils/xvgtest.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o -c /<>/src/external/tinyxml2/tinyxml2.cpp cd /<>/build/openmpi-dp/src/testutils && /usr/bin/cmake -P CMakeFiles/testutils.dir/cmake_clean_target.cmake cd /<>/build/openmpi-dp/src/testutils && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libtestutils.a CMakeFiles/testutils.dir/cmdlinetest.cpp.o CMakeFiles/testutils.dir/conftest.cpp.o CMakeFiles/testutils.dir/filematchers.cpp.o CMakeFiles/testutils.dir/interactivetest.cpp.o CMakeFiles/testutils.dir/loggertest.cpp.o CMakeFiles/testutils.dir/mpi-printer.cpp.o CMakeFiles/testutils.dir/mpitest.cpp.o CMakeFiles/testutils.dir/refdata.cpp.o CMakeFiles/testutils.dir/refdata-xml.cpp.o CMakeFiles/testutils.dir/stdiohelper.cpp.o CMakeFiles/testutils.dir/stringtest.cpp.o CMakeFiles/testutils.dir/testasserts.cpp.o CMakeFiles/testutils.dir/testfilemanager.cpp.o CMakeFiles/testutils.dir/testfileredirector.cpp.o CMakeFiles/testutils.dir/testinit.cpp.o CMakeFiles/testutils.dir/testoptions.cpp.o CMakeFiles/testutils.dir/textblockmatchers.cpp.o CMakeFiles/testutils.dir/xvgtest.cpp.o CMakeFiles/testutils.dir/__/external/tinyxml2/tinyxml2.cpp.o /usr/bin/ranlib ../../lib/libtestutils.a make[4]: Leaving directory '/<>/build/openmpi-dp' [ 83%] Built target testutils /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/depend /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/depend /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/testutils/tests /<>/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/DependInfo.cmake --color= cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/compat/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/compat/tests /<>/build/openmpi-dp/src/gromacs/compat/tests/CMakeFiles/compat-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/testutils/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/testutils/tests /<>/build/openmpi-dp/src/testutils/tests/CMakeFiles/testutils-test.dir/DependInfo.cmake --color= make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdlib/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/mdlib/tests /<>/build/openmpi-dp/src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/DependInfo.cmake --color= Scanning dependencies of target compat-test Scanning dependencies of target testutils-mpi-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build.make src/gromacs/compat/tests/CMakeFiles/compat-test.dir/build make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-mpi-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/make_unique.cpp.o -c /<>/src/gromacs/compat/tests/make_unique.cpp make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o -c /<>/src/testutils/tests/mpitest.cpp Scanning dependencies of target mdlib-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build.make src/gromacs/mdlib/tests/CMakeFiles/mdlib-test.dir/build Scanning dependencies of target testutils-test make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o -c /<>/src/gromacs/mdlib/tests/calc_verletbuf.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/testutils/tests/CMakeFiles/testutils-test.dir/build.make src/testutils/tests/CMakeFiles/testutils-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/interactivetest.cpp.o -c /<>/src/testutils/tests/interactivetest.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/compat/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/compat/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/lmfit -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-mpi-test.dir/mpitest.cpp.o CMakeFiles/testutils-mpi-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-mpi-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/mdebin.cpp.o -c /<>/src/gromacs/mdlib/tests/mdebin.cpp cd /<>/build/openmpi-dp/src/gromacs/compat/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/compat-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/compat-test.dir/make_unique.cpp.o CMakeFiles/compat-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/compat-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 84%] Built target testutils-mpi-test /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/applied-forces/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/applied-forces/tests /<>/build/openmpi-dp/src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target applied-forces-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build.make src/gromacs/applied-forces/tests/CMakeFiles/applied-forces-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/electricfield.cpp.o -c /<>/src/gromacs/applied-forces/tests/electricfield.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 84%] Built target compat-test /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/listed-forces/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/listed-forces/tests /<>/build/openmpi-dp/src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/DependInfo.cmake --color= Scanning dependencies of target listed-forces-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build.make src/gromacs/listed-forces/tests/CMakeFiles/listed-forces-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/bonded.cpp.o -c /<>/src/gromacs/listed-forces/tests/bonded.cpp cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/settle.cpp.o -c /<>/src/gromacs/mdlib/tests/settle.cpp cd /<>/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/listed-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/listed-forces/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o -c /<>/src/testutils/tests/refdata_tests.cpp cd /<>/build/openmpi-dp/src/gromacs/listed-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/listed-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/listed-forces-test.dir/bonded.cpp.o CMakeFiles/listed-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/listed-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/applied-forces/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/applied-forces/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 85%] Built target listed-forces-test /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/commandline/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/commandline/tests /<>/build/openmpi-dp/src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/DependInfo.cmake --color= Scanning dependencies of target commandline-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build.make src/gromacs/commandline/tests/CMakeFiles/commandline-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpmodule.cpp cd /<>/build/openmpi-dp/src/gromacs/applied-forces/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/applied-forces-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/applied-forces-test.dir/electricfield.cpp.o CMakeFiles/applied-forces-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/applied-forces-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 85%] Built target applied-forces-test /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/ewald/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/ewald/tests /<>/build/openmpi-dp/src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/DependInfo.cmake --color= Scanning dependencies of target ewald-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build.make src/gromacs/ewald/tests/CMakeFiles/ewald-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmebsplinetest.cpp cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/shake.cpp.o -c /<>/src/gromacs/mdlib/tests/shake.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o -c /<>/src/testutils/tests/testasserts_tests.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinehelpwriter.cpp cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o -c /<>/src/gromacs/ewald/tests/pmegathertest.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o -c /<>/src/testutils/tests/xvgtest_tests.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanager.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/testutils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/testutils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/testutils/../external/tinyxml2 -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o -c /<>/src/gromacs/mdlib/tests/simulationsignal.cpp cd /<>/build/openmpi-dp/src/testutils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/testutils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/testutils-test.dir/interactivetest.cpp.o CMakeFiles/testutils-test.dir/refdata_tests.cpp.o CMakeFiles/testutils-test.dir/testasserts_tests.cpp.o CMakeFiles/testutils-test.dir/xvgtest_tests.cpp.o CMakeFiles/testutils-test.dir/__/unittest_main.cpp.o -o ../../../bin/testutils-test ../../../lib/libtestutils.a ../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 85%] Built target testutils-test /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fft/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/fft/tests /<>/build/openmpi-dp/src/gromacs/fft/tests/CMakeFiles/fft-test.dir/DependInfo.cmake --color= Scanning dependencies of target fft-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build.make src/gromacs/fft/tests/CMakeFiles/fft-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/fft.cpp.o -c /<>/src/gromacs/fft/tests/fft.cpp cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdlib/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdlib/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/mdlib/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdlib-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdlib-test.dir/calc_verletbuf.cpp.o CMakeFiles/mdlib-test.dir/mdebin.cpp.o CMakeFiles/mdlib-test.dir/settle.cpp.o CMakeFiles/mdlib-test.dir/shake.cpp.o CMakeFiles/mdlib-test.dir/simulationsignal.cpp.o CMakeFiles/mdlib-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/mdlib-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fft/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fft/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlinemodulemanagertest.cpp cd /<>/build/openmpi-dp/src/gromacs/fft/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fft-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fft-test.dir/fft.cpp.o CMakeFiles/fft-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fft-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesolvetest.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 86%] Built target mdlib-test /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/gpu_utils/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/DependInfo.cmake --color= Scanning dependencies of target gpu_utils-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build.make src/gromacs/gpu_utils/tests/CMakeFiles/gpu_utils-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/gputest.cpp.o -c /<>/src/gromacs/gpu_utils/tests/gputest.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 86%] Built target fft-test /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/hardware/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/hardware/tests /<>/build/openmpi-dp/src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/DependInfo.cmake --color= Scanning dependencies of target hardware-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build.make src/gromacs/hardware/tests/CMakeFiles/hardware-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o -c /<>/src/gromacs/hardware/tests/hardwaretopology.cpp cd /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o -c /<>/src/gromacs/gpu_utils/tests/hostallocator.cpp cd /<>/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/hardware/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/hardware/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/hardware/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/hardware-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/hardware-test.dir/hardwaretopology.cpp.o CMakeFiles/hardware-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/hardware-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 86%] Built target hardware-test /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/math/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/math/tests /<>/build/openmpi-dp/src/gromacs/math/tests/CMakeFiles/math-test.dir/DependInfo.cmake --color= Scanning dependencies of target math-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/math/tests/CMakeFiles/math-test.dir/build.make src/gromacs/math/tests/CMakeFiles/math-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/functions.cpp.o -c /<>/src/gromacs/math/tests/functions.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineparser.cpp cd /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o -c /<>/src/gromacs/gpu_utils/tests/devicetransfers.cpp cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o -c /<>/src/gromacs/ewald/tests/pmesplinespreadtest.cpp cd /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/gpu_utils/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/gpu_utils/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/gpu_utils/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/gpu_utils-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/gpu_utils-test.dir/gputest.cpp.o CMakeFiles/gpu_utils-test.dir/hostallocator.cpp.o CMakeFiles/gpu_utils-test.dir/devicetransfers.cpp.o CMakeFiles/gpu_utils-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/gpu_utils-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 87%] Built target gpu_utils-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity.cpp cd /<>/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/invertmatrix.cpp.o -c /<>/src/gromacs/math/tests/invertmatrix.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o -c /<>/src/gromacs/commandline/tests/cmdlineprogramcontext.cpp cd /<>/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/vectypes.cpp.o -c /<>/src/gromacs/math/tests/vectypes.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/pargs.cpp.o -c /<>/src/gromacs/commandline/tests/pargs.cpp cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o -c /<>/src/gromacs/ewald/tests/pmetestcommon.cpp cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-test.dir/link.txt --verbose=1 cd /<>/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/math/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/math/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-test.dir/threadaffinity.cpp.o CMakeFiles/mdrunutility-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 87%] Built target mdrunutility-test /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/DependInfo.cmake --color= Scanning dependencies of target mdrunutility-mpi-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build.make src/gromacs/mdrunutility/tests/CMakeFiles/mdrunutility-mpi-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o -c /<>/src/gromacs/mdrunutility/tests/threadaffinity-mpi.cpp cd /<>/build/openmpi-dp/src/gromacs/math/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/math-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/math-test.dir/functions.cpp.o CMakeFiles/math-test.dir/invertmatrix.cpp.o CMakeFiles/math-test.dir/vectypes.cpp.o CMakeFiles/math-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/math-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 87%] Built target math-test /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/onlinehelp/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/DependInfo.cmake --color= Scanning dependencies of target onlinehelp-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build.make src/gromacs/onlinehelp/tests/CMakeFiles/onlinehelp-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpformat.cpp cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o -c /<>/src/gromacs/ewald/tests/testhardwarecontexts.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/commandline/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/commandline/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpmanager.cpp cd /<>/build/openmpi-dp/src/gromacs/commandline/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/commandline-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/commandline-test.dir/cmdlinehelpmodule.cpp.o CMakeFiles/commandline-test.dir/cmdlinehelpwriter.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanager.cpp.o CMakeFiles/commandline-test.dir/cmdlinemodulemanagertest.cpp.o CMakeFiles/commandline-test.dir/cmdlineparser.cpp.o CMakeFiles/commandline-test.dir/cmdlineprogramcontext.cpp.o CMakeFiles/commandline-test.dir/pargs.cpp.o CMakeFiles/commandline-test.dir/__/__/__/testutils/unittest_main.cpp.o ../../onlinehelp/tests/CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/commandline-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/ewald/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/ewald/tests/Testing/Temporary\" -DTEST_USES_HARDWARE_DETECTION=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 88%] Built target commandline-test /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/options/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/options/tests /<>/build/openmpi-dp/src/gromacs/options/tests/CMakeFiles/options-test.dir/DependInfo.cmake --color= Scanning dependencies of target options-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/options/tests/CMakeFiles/options-test.dir/build.make src/gromacs/options/tests/CMakeFiles/options-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o -c /<>/src/gromacs/options/tests/abstractoptionstorage.cpp cd /<>/build/openmpi-dp/src/gromacs/ewald/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/ewald-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/ewald-test.dir/pmebsplinetest.cpp.o CMakeFiles/ewald-test.dir/pmegathertest.cpp.o CMakeFiles/ewald-test.dir/pmesolvetest.cpp.o CMakeFiles/ewald-test.dir/pmesplinespreadtest.cpp.o CMakeFiles/ewald-test.dir/pmetestcommon.cpp.o CMakeFiles/ewald-test.dir/testhardwarecontexts.cpp.o CMakeFiles/ewald-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/ewald-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/mdrunutility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/mdrunutility/tests/Testing/Temporary\" -DTEST_USES_MPI=true -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 89%] Built target ewald-test /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/random/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/random/tests /<>/build/openmpi-dp/src/gromacs/random/tests/CMakeFiles/random-test.dir/DependInfo.cmake --color= Scanning dependencies of target random-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/random/tests/CMakeFiles/random-test.dir/build.make src/gromacs/random/tests/CMakeFiles/random-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/exponentialdistribution.cpp.o -c /<>/src/gromacs/random/tests/exponentialdistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/mdrunutility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/mdrunutility-mpi-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/mdrunutility-mpi-test.dir/threadaffinity-mpi.cpp.o CMakeFiles/mdrunutility-mpi-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/mdrunutility-test-shared.dir/threadaffinitytest.cpp.o -o ../../../../bin/mdrunutility-mpi-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 89%] Built target mdrunutility-mpi-test /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/tables/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/tables/tests /<>/build/openmpi-dp/src/gromacs/tables/tests/CMakeFiles/table-test.dir/DependInfo.cmake --color= Scanning dependencies of target table-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/tables/tests/CMakeFiles/table-test.dir/build.make src/gromacs/tables/tests/CMakeFiles/table-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/splinetable.cpp.o -c /<>/src/gromacs/tables/tests/splinetable.cpp cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o -c /<>/src/gromacs/onlinehelp/tests/helpwritercontext.cpp cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/onlinehelp/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/onlinehelp/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/gammadistribution.cpp.o -c /<>/src/gromacs/random/tests/gammadistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/onlinehelp/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/onlinehelp-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/onlinehelp-test.dir/helpformat.cpp.o CMakeFiles/onlinehelp-test.dir/helpmanager.cpp.o CMakeFiles/onlinehelp-test.dir/helpwritercontext.cpp.o CMakeFiles/onlinehelp-test.dir/__/__/__/testutils/unittest_main.cpp.o CMakeFiles/onlinehelp-test-shared.dir/mock_helptopic.cpp.o -o ../../../../bin/onlinehelp-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 90%] Built target onlinehelp-test /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/taskassignment/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/taskassignment/tests /<>/build/openmpi-dp/src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/DependInfo.cmake --color= Scanning dependencies of target taskassignment-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build.make src/gromacs/taskassignment/tests/CMakeFiles/taskassignment-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o -c /<>/src/gromacs/taskassignment/tests/usergpuids.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/normaldistribution.cpp.o -c /<>/src/gromacs/random/tests/normaldistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoption.cpp.o -c /<>/src/gromacs/options/tests/filenameoption.cpp cd /<>/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/taskassignment/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/taskassignment/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/taskassignment/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/taskassignment-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/taskassignment-test.dir/usergpuids.cpp.o CMakeFiles/taskassignment-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/taskassignment-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/seed.cpp.o -c /<>/src/gromacs/random/tests/seed.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 90%] Built target taskassignment-test /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/utility/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/utility/tests /<>/build/openmpi-dp/src/gromacs/utility/tests/CMakeFiles/utility-test.dir/DependInfo.cmake --color= Scanning dependencies of target utility-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build.make src/gromacs/utility/tests/CMakeFiles/utility-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/alignedallocator.cpp.o -c /<>/src/gromacs/utility/tests/alignedallocator.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o -c /<>/src/gromacs/options/tests/filenameoptionmanager.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o -c /<>/src/gromacs/random/tests/tabulatednormaldistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/tables/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/tables/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/tables/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/table-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/table-test.dir/splinetable.cpp.o CMakeFiles/table-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/table-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 91%] Built target table-test /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/fileio/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/fileio/tests /<>/build/openmpi-dp/src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/DependInfo.cmake --color= Scanning dependencies of target fileio-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build.make src/gromacs/fileio/tests/CMakeFiles/fileio-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/confio.cpp.o -c /<>/src/gromacs/fileio/tests/confio.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/threefry.cpp.o -c /<>/src/gromacs/random/tests/threefry.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/arrayref.cpp.o -c /<>/src/gromacs/utility/tests/arrayref.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/option.cpp.o -c /<>/src/gromacs/options/tests/option.cpp cd /<>/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/readinp.cpp.o -c /<>/src/gromacs/fileio/tests/readinp.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/optionsassigner.cpp.o -c /<>/src/gromacs/options/tests/optionsassigner.cpp cd /<>/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/tngio.cpp.o -c /<>/src/gromacs/fileio/tests/tngio.cpp cd /<>/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/fileio/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/fileio/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformintdistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/fileio/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/fileio-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/fileio-test.dir/confio.cpp.o CMakeFiles/fileio-test.dir/readinp.cpp.o CMakeFiles/fileio-test.dir/tngio.cpp.o CMakeFiles/fileio-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/fileio-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 92%] Built target fileio-test /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/pulling/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/pulling/tests /<>/build/openmpi-dp/src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/DependInfo.cmake --color= Scanning dependencies of target pull-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build.make src/gromacs/pulling/tests/CMakeFiles/pull-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/pull.cpp.o -c /<>/src/gromacs/pulling/tests/pull.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o -c /<>/src/gromacs/random/tests/uniformrealdistribution.cpp cd /<>/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/pulling/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/pulling/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/pulling/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/pull-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/pull-test.dir/pull.cpp.o CMakeFiles/pull-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/pull-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 92%] Built target pull-test cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/random/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/random/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/awh/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/awh/tests /<>/build/openmpi-dp/src/gromacs/awh/tests/CMakeFiles/awh-test.dir/DependInfo.cmake --color= Scanning dependencies of target awh-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build.make src/gromacs/awh/tests/CMakeFiles/awh-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/bias.cpp.o -c /<>/src/gromacs/awh/tests/bias.cpp cd /<>/build/openmpi-dp/src/gromacs/random/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/random-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/random-test.dir/exponentialdistribution.cpp.o CMakeFiles/random-test.dir/gammadistribution.cpp.o CMakeFiles/random-test.dir/normaldistribution.cpp.o CMakeFiles/random-test.dir/seed.cpp.o CMakeFiles/random-test.dir/tabulatednormaldistribution.cpp.o CMakeFiles/random-test.dir/threefry.cpp.o CMakeFiles/random-test.dir/uniformintdistribution.cpp.o CMakeFiles/random-test.dir/uniformrealdistribution.cpp.o CMakeFiles/random-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/random-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/repeatingsection.cpp.o -c /<>/src/gromacs/options/tests/repeatingsection.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 94%] Built target random-test /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs/simd/tests /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs/simd/tests /<>/build/openmpi-dp/src/gromacs/simd/tests/CMakeFiles/simd-test.dir/DependInfo.cmake --color= Scanning dependencies of target simd-test make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build.make src/gromacs/simd/tests/CMakeFiles/simd-test.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o -c /<>/src/gromacs/simd/tests/bootstrap_loadstore.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/base.cpp.o -c /<>/src/gromacs/simd/tests/base.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/data.cpp.o -c /<>/src/gromacs/simd/tests/data.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd.cpp.o -c /<>/src/gromacs/simd/tests/simd.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/timeunitmanager.cpp.o -c /<>/src/gromacs/options/tests/timeunitmanager.cpp cd /<>/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/biasstate.cpp.o -c /<>/src/gromacs/awh/tests/biasstate.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask32.cpp.o -c /<>/src/gromacs/utility/tests/bitmask32.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/treesupport.cpp.o -c /<>/src/gromacs/options/tests/treesupport.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint.cpp cd /<>/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/grid.cpp.o -c /<>/src/gromacs/awh/tests/grid.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask64.cpp.o -c /<>/src/gromacs/utility/tests/bitmask64.cpp cd /<>/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/awh/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/awh/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/awh/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/awh-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/awh-test.dir/bias.cpp.o CMakeFiles/awh-test.dir/biasstate.cpp.o CMakeFiles/awh-test.dir/grid.cpp.o CMakeFiles/awh-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/awh-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [ 94%] Built target awh-test cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/bitmask128.cpp.o -c /<>/src/gromacs/utility/tests/bitmask128.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o -c /<>/src/gromacs/simd/tests/simd_floatingpoint_util.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreeserializer.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/options/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/options/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/options/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/options-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/options-test.dir/abstractoptionstorage.cpp.o CMakeFiles/options-test.dir/filenameoption.cpp.o CMakeFiles/options-test.dir/filenameoptionmanager.cpp.o CMakeFiles/options-test.dir/option.cpp.o CMakeFiles/options-test.dir/optionsassigner.cpp.o CMakeFiles/options-test.dir/repeatingsection.cpp.o CMakeFiles/options-test.dir/timeunitmanager.cpp.o CMakeFiles/options-test.dir/treesupport.cpp.o CMakeFiles/options-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/options-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o -c /<>/src/gromacs/utility/tests/keyvaluetreetransform.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 95%] Built target options-test cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/logger.cpp.o -c /<>/src/gromacs/utility/tests/logger.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/mutex.cpp.o -c /<>/src/gromacs/utility/tests/mutex.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd_vector_operations.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/path.cpp.o -c /<>/src/gromacs/utility/tests/path.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_math.cpp.o -c /<>/src/gromacs/simd/tests/simd_math.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/stringutil.cpp.o -c /<>/src/gromacs/utility/tests/stringutil.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textreader.cpp.o -c /<>/src/gromacs/utility/tests/textreader.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/textwriter.cpp.o -c /<>/src/gromacs/utility/tests/textwriter.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/typetraits.cpp.o -c /<>/src/gromacs/utility/tests/typetraits.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/utility/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/utility/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_memory.cpp.o -c /<>/src/gromacs/simd/tests/simd_memory.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd_integer.cpp.o -c /<>/src/gromacs/simd/tests/simd_integer.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4.cpp.o -c /<>/src/gromacs/simd/tests/simd4.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o -c /<>/src/gromacs/simd/tests/simd4_floatingpoint.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o -c /<>/src/gromacs/simd/tests/simd4_vector_operations.cpp cd /<>/build/openmpi-dp/src/gromacs/utility/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/utility-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/utility-test.dir/alignedallocator.cpp.o CMakeFiles/utility-test.dir/arrayref.cpp.o CMakeFiles/utility-test.dir/bitmask32.cpp.o CMakeFiles/utility-test.dir/bitmask64.cpp.o CMakeFiles/utility-test.dir/bitmask128.cpp.o CMakeFiles/utility-test.dir/keyvaluetreeserializer.cpp.o CMakeFiles/utility-test.dir/keyvaluetreetransform.cpp.o CMakeFiles/utility-test.dir/logger.cpp.o CMakeFiles/utility-test.dir/mutex.cpp.o CMakeFiles/utility-test.dir/path.cpp.o CMakeFiles/utility-test.dir/stringutil.cpp.o CMakeFiles/utility-test.dir/textreader.cpp.o CMakeFiles/utility-test.dir/textwriter.cpp.o CMakeFiles/utility-test.dir/typetraits.cpp.o CMakeFiles/utility-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/utility-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/simd4_math.cpp.o -c /<>/src/gromacs/simd/tests/simd4_math.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar.cpp.o -c /<>/src/gromacs/simd/tests/scalar.cpp make[4]: Leaving directory '/<>/build/openmpi-dp' [ 97%] Built target utility-test cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_util.cpp.o -c /<>/src/gromacs/simd/tests/scalar_util.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/scalar_math.cpp.o -c /<>/src/gromacs/simd/tests/scalar_math.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/mpicxx.openmpi -DGMX_DOUBLE=1 -DGTEST_HAS_PTHREAD=1 -DHAVE_CONFIG_H -DTEST_DATA_PATH=\"src/gromacs/simd/tests\" -DTEST_TEMP_PATH=\"/<>/build/openmpi-dp/src/gromacs/simd/tests/Testing/Temporary\" -I/<>/build/openmpi-dp/src -I/<>/src -isystem /<>/src/external/gmock-1.7.0/gtest/include -isystem /<>/src/external/gmock-1.7.0/include -isystem /<>/src/external/thread_mpi/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -Wno-unused-variable -o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -c /<>/src/testutils/unittest_main.cpp cd /<>/build/openmpi-dp/src/gromacs/simd/tests && /usr/bin/cmake -E cmake_link_script CMakeFiles/simd-test.dir/link.txt --verbose=1 /usr/bin/mpicxx.openmpi -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -DNDEBUG -funroll-all-loops -fexcess-precision=fast -L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/simd-test.dir/bootstrap_loadstore.cpp.o CMakeFiles/simd-test.dir/base.cpp.o CMakeFiles/simd-test.dir/data.cpp.o CMakeFiles/simd-test.dir/simd.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd_floatingpoint_util.cpp.o CMakeFiles/simd-test.dir/simd_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd_math.cpp.o CMakeFiles/simd-test.dir/simd_memory.cpp.o CMakeFiles/simd-test.dir/simd_integer.cpp.o CMakeFiles/simd-test.dir/simd4.cpp.o CMakeFiles/simd-test.dir/simd4_floatingpoint.cpp.o CMakeFiles/simd-test.dir/simd4_vector_operations.cpp.o CMakeFiles/simd-test.dir/simd4_math.cpp.o CMakeFiles/simd-test.dir/scalar.cpp.o CMakeFiles/simd-test.dir/scalar_util.cpp.o CMakeFiles/simd-test.dir/scalar_math.cpp.o CMakeFiles/simd-test.dir/__/__/__/testutils/unittest_main.cpp.o -o ../../../../bin/simd-test ../../../../lib/libtestutils.a ../../../../lib/libgromacs_mdrun_mpi_d.openmpi.a ../../../../lib/libgmock.a -fopenmp /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libhwloc.so -lrt /usr/lib/aarch64-linux-gnu/libfftw3.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lm make[4]: Leaving directory '/<>/build/openmpi-dp' [100%] Built target simd-test /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/depend make[4]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/build/openmpi-dp /<>/build/openmpi-dp /<>/build/openmpi-dp/CMakeFiles/tests.dir/DependInfo.cmake --color= Scanning dependencies of target tests make[4]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f CMakeFiles/tests.dir/build.make CMakeFiles/tests.dir/build make[4]: Entering directory '/<>/build/openmpi-dp' make[4]: Nothing to be done for 'CMakeFiles/tests.dir/build'. make[4]: Leaving directory '/<>/build/openmpi-dp' [100%] Built target tests make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles 0 make[2]: Leaving directory '/<>/build/openmpi-dp' make[1]: Leaving directory '/<>/build/openmpi-dp' (cd build/openmpi-dp ; LD_LIBRARY_PATH=/<>/build/openmpi-dp/lib \ OMPI_MCA_plm_rsh_agent=/bin/false \ OMPI_MCA_rmaps_base_oversubscribe=1 \ OMPI_MCA_btl_base_warn_component_unused=0 \ GTEST_FILTER="-*ChangingPinningPolicyRequiresCuda" \ ctest -V -E MdrunUtilityMpiUnitTests) UpdateCTestConfiguration from :/<>/build/openmpi-dp/DartConfiguration.tcl Parse Config file:/<>/build/openmpi-dp/DartConfiguration.tcl UpdateCTestConfiguration from :/<>/build/openmpi-dp/DartConfiguration.tcl Parse Config file:/<>/build/openmpi-dp/DartConfiguration.tcl Test project /<>/build/openmpi-dp Constructing a list of tests Done constructing a list of tests Updating test list for fixtures Added 0 tests to meet fixture requirements Checking test dependency graph... Checking test dependency graph end test 1 Start 1: TestUtilsUnitTests 1: Test command: /<>/build/openmpi-dp/bin/testutils-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/TestUtilsUnitTests.xml" 1: Test timeout computed to be: 30 1: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 1: [==========] Running 59 tests from 5 test cases. 1: [----------] Global test environment set-up. 1: [----------] 10 tests from InteractiveTestHelperTest 1: [ RUN ] InteractiveTestHelperTest.ChecksSimpleSession 1: [ OK ] InteractiveTestHelperTest.ChecksSimpleSession (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithoutLastNewline (0 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput 1: [ OK ] InteractiveTestHelperTest.ChecksSessionWithEquivalentOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsIncorrectOutput 1: [ OK ] InteractiveTestHelperTest.DetectsIncorrectOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingFinalOutput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingFinalOutput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraOutput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraOutput (1 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsMissingInput 1: [ OK ] InteractiveTestHelperTest.DetectsMissingInput (0 ms) 1: [ RUN ] InteractiveTestHelperTest.DetectsExtraInput 1: [ OK ] InteractiveTestHelperTest.DetectsExtraInput (1 ms) 1: [----------] 10 tests from InteractiveTestHelperTest (7 ms total) 1: 1: [----------] 34 tests from ReferenceDataTest 1: [ RUN ] ReferenceDataTest.HandlesSimpleData 1: [ OK ] ReferenceDataTest.HandlesSimpleData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesFloatingPointData 1: [ OK ] ReferenceDataTest.HandlesFloatingPointData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesPresenceChecks 1: [ OK ] ReferenceDataTest.HandlesPresenceChecks (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringBlockData 1: [ OK ] ReferenceDataTest.HandlesStringBlockData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVectorData 1: [ OK ] ReferenceDataTest.HandlesVectorData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceData 1: [ OK ] ReferenceDataTest.HandlesSequenceData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceOfCustomData 1: [ OK ] ReferenceDataTest.HandlesSequenceOfCustomData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectData 1: [ OK ] ReferenceDataTest.HandlesIncorrectData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesIncorrectDataType 1: [ OK ] ReferenceDataTest.HandlesIncorrectDataType (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingData 1: [ OK ] ReferenceDataTest.HandlesMissingData (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedData 1: [ OK ] ReferenceDataTest.HandlesUncheckedData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInSequence 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInSequence (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUncheckedDataInCompound 1: [ OK ] ReferenceDataTest.HandlesUncheckedDataInCompound (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariants 1: [ OK ] ReferenceDataTest.HandlesVariants (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTree 1: [ OK ] ReferenceDataTest.HandlesKeyValueTree (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeExtraKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeExtraKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesKeyValueTreeMissingKey 1: [ OK ] ReferenceDataTest.HandlesKeyValueTreeMissingKey (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectValue 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectValue (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesVariantsWithIncorrectType 1: [ OK ] ReferenceDataTest.HandlesVariantsWithIncorrectType (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMissingReferenceDataFile 1: [ OK ] ReferenceDataTest.HandlesMissingReferenceDataFile (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSpecialCharactersInStrings 1: [ OK ] ReferenceDataTest.HandlesSpecialCharactersInStrings (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace 1: [ OK ] ReferenceDataTest.HandlesStringsWithTextAndWhitespace (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmptyStrings 1: [ OK ] ReferenceDataTest.HandlesEmptyStrings (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock 1: [ OK ] ReferenceDataTest.HandlesEmbeddedCdataEndTagInTextBlock (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesSequenceItemIndices 1: [ OK ] ReferenceDataTest.HandlesSequenceItemIndices (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData 1: [ OK ] ReferenceDataTest.HandlesMultipleChecksAgainstSameData (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleNullIds (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds 1: [ OK ] ReferenceDataTest.HandlesMultipleComparisonsAgainstNullIds (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesReadingValues 1: [ OK ] ReferenceDataTest.HandlesReadingValues (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithoutChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithValueChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithTypeChanges (0 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithCompoundChanges (1 ms) 1: [ RUN ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries 1: [ OK ] ReferenceDataTest.HandlesUpdateChangedWithRemovedEntries (1 ms) 1: [----------] 34 tests from ReferenceDataTest (15 ms total) 1: 1: [----------] 7 tests from FloatingPointDifferenceTest 1: [ RUN ] FloatingPointDifferenceTest.HandlesEqualValues 1: [ OK ] FloatingPointDifferenceTest.HandlesEqualValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesFloatValues 1: [ OK ] FloatingPointDifferenceTest.HandlesFloatValues (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign 1: [ OK ] FloatingPointDifferenceTest.HandlesZerosOfDifferentSign (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero 1: [ OK ] FloatingPointDifferenceTest.HandlesSignComparisonWithZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferences 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferences (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero 1: [ OK ] FloatingPointDifferenceTest.HandlesUlpDifferenceAcrossZero (0 ms) 1: [ RUN ] FloatingPointDifferenceTest.HandlesNaN 1: [ OK ] FloatingPointDifferenceTest.HandlesNaN (0 ms) 1: [----------] 7 tests from FloatingPointDifferenceTest (0 ms total) 1: 1: [----------] 4 tests from FloatingPointToleranceTest 1: [ RUN ] FloatingPointToleranceTest.UlpTolerance 1: [ OK ] FloatingPointToleranceTest.UlpTolerance (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsFloatingPoint (0 ms) 1: [ RUN ] FloatingPointToleranceTest.RelativeToleranceAsUlp 1: [ OK ] FloatingPointToleranceTest.RelativeToleranceAsUlp (0 ms) 1: [ RUN ] FloatingPointToleranceTest.DefaultFloatTolerance 1: [ OK ] FloatingPointToleranceTest.DefaultFloatTolerance (0 ms) 1: [----------] 4 tests from FloatingPointToleranceTest (0 ms total) 1: 1: [----------] 4 tests from XvgTests 1: [ RUN ] XvgTests.CreateFile 1: [ OK ] XvgTests.CreateFile (0 ms) 1: [ RUN ] XvgTests.CheckMissing 1: [ OK ] XvgTests.CheckMissing (1 ms) 1: [ RUN ] XvgTests.CheckExtra 1: [ OK ] XvgTests.CheckExtra (1 ms) 1: [ RUN ] XvgTests.ReadIncorrect 1: [ OK ] XvgTests.ReadIncorrect (0 ms) 1: [----------] 4 tests from XvgTests (2 ms total) 1: 1: [----------] Global test environment tear-down 1: [==========] 59 tests from 5 test cases ran. (25 ms total) 1: [ PASSED ] 59 tests. 1/23 Test #1: TestUtilsUnitTests ............... Passed 0.18 sec test 2 Start 2: TestUtilsMpiUnitTests 2: Test command: /usr/bin/mpiexec.openmpi "-np" "2" "/<>/build/openmpi-dp/bin/testutils-mpi-test" "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/TestUtilsMpiUnitTests.xml" 2: Test timeout computed to be: 30 2: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 2: [==========] Running 1 test from 1 test case. 2: [----------] Global test environment set-up. 2: [----------] 1 test from MpiSelfTest 2: [ RUN ] MpiSelfTest.Runs 2: [ OK ] MpiSelfTest.Runs (0 ms) 2: [----------] 1 test from MpiSelfTest (0 ms total) 2: 2: [----------] Global test environment tear-down 2: [==========] 1 test from 1 test case ran. (1 ms total) 2: [ PASSED ] 1 test. 2/23 Test #2: TestUtilsMpiUnitTests ............ Passed 0.18 sec test 3 Start 3: MdlibUnitTest 3: Test command: /<>/build/openmpi-dp/bin/mdlib-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/MdlibUnitTest.xml" 3: Test timeout computed to be: 30 3: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 3: [==========] Running 40 tests from 6 test cases. 3: [----------] Global test environment set-up. 3: [----------] 1 test from VerletBufferConstraintTest 3: [ RUN ] VerletBufferConstraintTest.EqualMasses 3: [ OK ] VerletBufferConstraintTest.EqualMasses (0 ms) 3: [----------] 1 test from VerletBufferConstraintTest (0 ms total) 3: 3: [----------] 3 tests from PrintEbin 3: [ RUN ] PrintEbin.print_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.print_ebin_HandlesEmptyAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesAverages (1 ms) 3: [ RUN ] PrintEbin.pr_ebin_HandlesEmptyAverages 3: [ OK ] PrintEbin.pr_ebin_HandlesEmptyAverages (0 ms) 3: [----------] 3 tests from PrintEbin (2 ms total) 3: 3: [----------] 4 tests from ShakeTest 3: [ RUN ] ShakeTest.ConstrainsOneBond 3: [ OK ] ShakeTest.ConstrainsOneBond (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoDisjointBonds 3: [ OK ] ShakeTest.ConstrainsTwoDisjointBonds (0 ms) 3: [ RUN ] ShakeTest.ConstrainsTwoBondsWithACommonAtom 3: [ OK ] ShakeTest.ConstrainsTwoBondsWithACommonAtom (0 ms) 3: [ RUN ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms 3: [ OK ] ShakeTest.ConstrainsThreeBondsWithCommonAtoms (0 ms) 3: [----------] 4 tests from ShakeTest (0 ms total) 3: 3: [----------] 1 test from NullSignalTest 3: [ RUN ] NullSignalTest.NullSignallerWorks 3: [ OK ] NullSignalTest.NullSignallerWorks (0 ms) 3: [----------] 1 test from NullSignalTest (0 ms total) 3: 3: [----------] 7 tests from SignalTest 3: [ RUN ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace 3: [ OK ] SignalTest.NoSignalPropagatesIfNoSignallingTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenInterSimTakesPlace (0 ms) 3: [ RUN ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.LocalIntraSimSignalPropagatesWhenBothTakePlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalDoesntPropagateWhenIntraSimSignalTakesPlace (0 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenInterSimSignalTakesPlace (1 ms) 3: [ RUN ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace 3: [ OK ] SignalTest.NonLocalSignalPropagatesWhenBothTakePlace (0 ms) 3: [----------] 7 tests from SignalTest (1 ms total) 3: 3: [----------] 24 tests from WithParameters/SettleTest 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/0 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/0 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/1 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/1 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/2 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/2 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/3 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/3 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/4 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/4 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/5 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/5 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/6 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/6 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/7 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/7 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/8 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/8 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/9 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/9 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/10 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/10 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/11 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/11 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/12 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/12 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/13 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/13 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/14 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/14 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/15 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/15 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/16 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/16 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/17 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/17 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/18 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/18 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/19 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/19 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/20 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/20 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/21 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/21 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/22 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/22 (0 ms) 3: [ RUN ] WithParameters/SettleTest.SatisfiesConstraints/23 3: [ OK ] WithParameters/SettleTest.SatisfiesConstraints/23 (0 ms) 3: [----------] 24 tests from WithParameters/SettleTest (1 ms total) 3: 3: [----------] Global test environment tear-down 3: [==========] 40 tests from 6 test cases ran. (4 ms total) 3: [ PASSED ] 40 tests. 3/23 Test #3: MdlibUnitTest .................... Passed 0.16 sec test 4 Start 4: AppliedForcesUnitTest 4: Test command: /<>/build/openmpi-dp/bin/applied-forces-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/AppliedForcesUnitTest.xml" 4: Test timeout computed to be: 30 4: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 4: [==========] Running 3 tests from 1 test case. 4: [----------] Global test environment set-up. 4: [----------] 3 tests from ElectricFieldTest 4: [ RUN ] ElectricFieldTest.Static 4: [ OK ] ElectricFieldTest.Static (1 ms) 4: [ RUN ] ElectricFieldTest.Oscillating 4: [ OK ] ElectricFieldTest.Oscillating (0 ms) 4: [ RUN ] ElectricFieldTest.Pulsed 4: [ OK ] ElectricFieldTest.Pulsed (0 ms) 4: [----------] 3 tests from ElectricFieldTest (1 ms total) 4: 4: [----------] Global test environment tear-down 4: [==========] 3 tests from 1 test case ran. (1 ms total) 4: [ PASSED ] 3 tests. 4/23 Test #4: AppliedForcesUnitTest ............ Passed 0.15 sec test 5 Start 5: ListedForcesTest 5: Test command: /<>/build/openmpi-dp/bin/listed-forces-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/ListedForcesTest.xml" 5: Test timeout computed to be: 30 5: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 5: [==========] Running 15 tests from 1 test case. 5: [----------] Global test environment set-up. 5: [----------] 15 tests from BondedTest 5: [ RUN ] BondedTest.BondAnglePbcNone 5: [ OK ] BondedTest.BondAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXy 5: [ OK ] BondedTest.BondAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.BondAnglePbcXyz 5: [ OK ] BondedTest.BondAnglePbcXyz (1 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcNone 5: [ OK ] BondedTest.DihedralAnglePbcNone (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXy 5: [ OK ] BondedTest.DihedralAnglePbcXy (0 ms) 5: [ RUN ] BondedTest.DihedralAnglePbcXyz 5: [ OK ] BondedTest.DihedralAnglePbcXyz (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcNo 5: [ OK ] BondedTest.IfuncBondsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXy 5: [ OK ] BondedTest.IfuncBondsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncBondsPbcXyz 5: [ OK ] BondedTest.IfuncBondsPbcXyz (1 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcNo 5: [ OK ] BondedTest.IfuncAnglesPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXy 5: [ OK ] BondedTest.IfuncAnglesPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncAnglesPbcXYZ 5: [ OK ] BondedTest.IfuncAnglesPbcXYZ (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcNo 5: [ OK ] BondedTest.IfuncProperDihedralsPbcNo (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXy 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXy (0 ms) 5: [ RUN ] BondedTest.IfuncProperDihedralsPbcXyz 5: [ OK ] BondedTest.IfuncProperDihedralsPbcXyz (0 ms) 5: [----------] 15 tests from BondedTest (2 ms total) 5: 5: [----------] Global test environment tear-down 5: [==========] 15 tests from 1 test case ran. (2 ms total) 5: [ PASSED ] 15 tests. 5/23 Test #5: ListedForcesTest ................. Passed 0.15 sec test 6 Start 6: CommandLineUnitTests 6: Test command: /<>/build/openmpi-dp/bin/commandline-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/CommandLineUnitTests.xml" 6: Test timeout computed to be: 30 6: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 6: [==========] Running 57 tests from 6 test cases. 6: [----------] Global test environment set-up. 6: [----------] 3 tests from CommandLineHelpModuleTest 6: [ RUN ] CommandLineHelpModuleTest.PrintsGeneralHelp 6: [ OK ] CommandLineHelpModuleTest.PrintsGeneralHelp (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.PrintsHelpOnTopic 6: [ OK ] CommandLineHelpModuleTest.PrintsHelpOnTopic (1 ms) 6: [ RUN ] CommandLineHelpModuleTest.ExportsHelp 6: [ OK ] CommandLineHelpModuleTest.ExportsHelp (3 ms) 6: [----------] 3 tests from CommandLineHelpModuleTest (5 ms total) 6: 6: [----------] 6 tests from CommandLineHelpWriterTest 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionTypes 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionTypes (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables 6: [ OK ] CommandLineHelpWriterTest.HandlesDefaultValuesFromVariables (1 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongFileOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongFileOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesLongOptions 6: [ OK ] CommandLineHelpWriterTest.HandlesLongOptions (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesOptionGroups 6: [ OK ] CommandLineHelpWriterTest.HandlesOptionGroups (0 ms) 6: [ RUN ] CommandLineHelpWriterTest.HandlesHelpText 6: [ OK ] CommandLineHelpWriterTest.HandlesHelpText (1 ms) 6: [----------] 6 tests from CommandLineHelpWriterTest (2 ms total) 6: 6: [----------] 6 tests from CommandLineModuleManagerTest 6: [ RUN ] CommandLineModuleManagerTest.RunsModule 6: [ OK ] CommandLineModuleManagerTest.RunsModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelp 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelp (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpAfterQuiet (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashH (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule 6: [ OK ] CommandLineModuleManagerTest.RunsModuleHelpWithDashHWithSingleModule (0 ms) 6: [ RUN ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames 6: [ OK ] CommandLineModuleManagerTest.HandlesConflictingBinaryAndModuleNames (1 ms) 6: [----------] 6 tests from CommandLineModuleManagerTest (1 ms total) 6: 6: [----------] 13 tests from CommandLineParserTest 6: [ RUN ] CommandLineParserTest.HandlesSingleValues 6: [ OK ] CommandLineParserTest.HandlesSingleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument 6: [ OK ] CommandLineParserTest.HandlesBooleanAsNoWithoutArgument (0 ms) 6: [ RUN ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument 6: [ OK ] CommandLineParserTest.ThrowsWithBooleanAsNoWithArgument (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesNegativeNumbers 6: [ OK ] CommandLineParserTest.HandlesNegativeNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesString 6: [ OK ] CommandLineParserTest.HandlesString (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsStringWithMultipleValues 6: [ OK ] CommandLineParserTest.RejectsStringWithMultipleValues (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesDoubleDashOptionPrefix 6: [ OK ] CommandLineParserTest.HandlesDoubleDashOptionPrefix (1 ms) 6: [ RUN ] CommandLineParserTest.HandlesOptionsStartingWithNumbers 6: [ OK ] CommandLineParserTest.HandlesOptionsStartingWithNumbers (0 ms) 6: [ RUN ] CommandLineParserTest.HandlesSkipUnknown 6: [ OK ] CommandLineParserTest.HandlesSkipUnknown (0 ms) 6: [ RUN ] CommandLineParserTest.RejectsPositionalArgumentsByDefault 6: [ OK ] CommandLineParserTest.RejectsPositionalArgumentsByDefault (0 ms) 6: [ RUN ] CommandLineParserTest.CanAllowPositionalArguments 6: [ OK ] CommandLineParserTest.CanAllowPositionalArguments (0 ms) 6: [ RUN ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions 6: [ OK ] CommandLineParserTest.CannotHavePositionalArgumentsAfterOptions (0 ms) 6: [----------] 13 tests from CommandLineParserTest (1 ms total) 6: 6: [----------] 6 tests from CommandLineProgramContextTest 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithAbsolutePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryWithRelativePath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryWithRelativePath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromPath 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromPath (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromCurrentDirectory (0 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromAbsoluteSymLink (1 ms) 6: [ RUN ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink 6: [ OK ] CommandLineProgramContextTest.FindsBinaryFromRelativeSymLink (0 ms) 6: [----------] 6 tests from CommandLineProgramContextTest (1 ms total) 6: 6: [----------] 23 tests from ParseCommonArgsTest 6: [ RUN ] ParseCommonArgsTest.ParsesIntegerArgs 6: [ OK ] ParseCommonArgsTest.ParsesIntegerArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesInt64Args 6: [ OK ] ParseCommonArgsTest.ParsesInt64Args (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesRealArgs 6: [ OK ] ParseCommonArgsTest.ParsesRealArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesStringArgs 6: [ OK ] ParseCommonArgsTest.ParsesStringArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesBooleanArgs 6: [ OK ] ParseCommonArgsTest.ParsesBooleanArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesVectorArgs 6: [ OK ] ParseCommonArgsTest.ParsesVectorArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgs 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit 6: [ OK ] ParseCommonArgsTest.ParsesTimeArgsWithTimeUnit (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesEnumArgs 6: [ OK ] ParseCommonArgsTest.ParsesEnumArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgs 6: [ OK ] ParseCommonArgsTest.ParsesFileArgs (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaults 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaults (0 ms) 6: [ RUN ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.ParsesFileArgsWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension 6: [ OK ] ParseCommonArgsTest.ParseFileArgsWithCustomDefaultExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles 6: [ OK ] ParseCommonArgsTest.HandlesNonExistentOptionalInputFiles (0 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified 6: [ OK ] ParseCommonArgsTest.AcceptsNonExistentInputFilesIfSpecified (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesCompressedFiles 6: [ OK ] ParseCommonArgsTest.HandlesCompressedFiles (1 ms) 6: [ RUN ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension 6: [ OK ] ParseCommonArgsTest.AcceptsUnknownTrajectoryExtension (0 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFile 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFile (1 ms) 6: [ RUN ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.CompletesExtensionFromExistingFileWithDefaultFileName (1 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNode 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNode (0 ms) 6: [ RUN ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName 6: [ OK ] ParseCommonArgsTest.HandlesNonReadNodeWithDefaultFileName (0 ms) 6: [ RUN ] ParseCommonArgsTest.CanKeepUnknownArgs 6: [ OK ] ParseCommonArgsTest.CanKeepUnknownArgs (0 ms) 6: [----------] 23 tests from ParseCommonArgsTest (5 ms total) 6: 6: [----------] Global test environment tear-down 6: [==========] 57 tests from 6 test cases ran. (15 ms total) 6: [ PASSED ] 57 tests. 6/23 Test #6: CommandLineUnitTests ............. Passed 0.17 sec test 7 Start 7: EwaldUnitTests 7: Test command: /<>/build/openmpi-dp/bin/ewald-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/EwaldUnitTests.xml" 7: Test timeout computed to be: 30 7: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 7: [==========] Running 257 tests from 10 test cases. 7: [----------] Global test environment set-up. 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/0 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/1 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/2 (0 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/3 (4 ms) 7: [ RUN ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 7: [ OK ] InsaneInput/PmeBSplineModuliFailureTest.Throws/4 (0 ms) 7: [----------] 5 tests from InsaneInput/PmeBSplineModuliFailureTest (4 ms total) 7: 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/0 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/1 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/2 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/3 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/4 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/5 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/6 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/7 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/8 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/9 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/10 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/11 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/12 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/13 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/14 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/15 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/16 (3 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/17 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/18 (4 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/19 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/20 (2 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/21 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/22 (1 ms) 7: [ RUN ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 7: [ OK ] SaneInput1/PmeBSplineModuliCorrectnessTest.ReproducesValues/23 (3 ms) 7: [----------] 24 tests from SaneInput1/PmeBSplineModuliCorrectnessTest (66 ms total) 7: 7: [----------] 144 tests from SaneInput/PmeGatherTest 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/3 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/7 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/9 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/10 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/11 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/14 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/15 (2 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/16 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/16 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/17 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/17 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/18 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/18 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/19 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/19 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/20 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/20 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/21 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/21 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/22 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/22 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/23 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/23 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/24 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/24 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/25 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/25 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/26 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/26 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/27 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/27 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/28 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/28 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/29 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/29 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/30 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/30 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/31 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/31 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/32 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/32 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/33 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/33 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/34 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/34 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/35 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/35 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/36 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/36 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/37 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/37 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/38 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/38 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/39 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/39 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/40 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/40 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/41 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/41 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/42 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/42 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/43 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/43 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/44 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/44 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/45 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/45 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/46 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/46 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/47 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/47 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/48 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/48 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/49 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/49 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/50 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/50 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/51 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/51 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/52 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/52 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/53 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/53 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/54 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/54 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/55 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/55 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/56 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/56 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/57 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/57 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/58 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/58 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/59 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/59 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/60 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/60 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/61 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/61 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/62 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/62 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/63 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/63 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/64 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/64 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/65 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/65 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/66 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/66 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/67 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/67 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/68 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/68 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/69 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/69 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/70 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/70 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/71 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/71 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/72 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/72 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/73 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/73 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/74 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/74 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/75 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/75 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/76 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/76 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/77 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/77 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/78 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/78 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/79 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/79 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/80 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/80 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/81 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/81 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/82 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/82 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/83 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/83 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/84 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/84 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/85 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/85 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/86 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/86 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/87 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/87 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/88 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/88 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/89 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/89 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/90 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/90 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/91 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/91 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/92 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/92 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/93 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/93 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/94 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/94 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/95 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/95 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/96 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/96 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/97 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/97 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/98 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/98 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/99 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/99 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/100 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/100 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/101 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/101 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/102 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/102 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/103 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/103 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/104 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/104 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/105 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/105 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/106 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/106 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/107 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/107 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/108 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/108 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/109 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/109 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/110 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/110 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/111 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/111 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/112 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/112 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/113 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/113 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/114 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/114 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/115 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/115 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/116 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/116 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/117 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/117 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/118 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/118 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/119 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/119 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/120 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/120 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/121 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/121 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/122 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/122 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/123 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/123 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/124 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/124 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/125 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/125 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/126 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/126 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/127 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/127 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/128 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/128 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/129 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/129 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/130 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/130 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/131 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/131 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/132 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/132 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/133 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/133 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/134 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/134 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/135 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/135 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/136 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/136 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/137 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/137 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/138 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/138 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/139 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/139 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/140 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/140 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/141 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/141 (1 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/142 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/142 (0 ms) 7: [ RUN ] SaneInput/PmeGatherTest.ReproducesOutputs/143 7: [ OK ] SaneInput/PmeGatherTest.ReproducesOutputs/143 (1 ms) 7: [----------] 144 tests from SaneInput/PmeGatherTest (110 ms total) 7: 7: [----------] 16 tests from SaneInput/PmeSolveTest 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/5 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/10 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/11 (3 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/12 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/13 (2 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/14 (1 ms) 7: [ RUN ] SaneInput/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] SaneInput/PmeSolveTest.ReproducesOutputs/15 (2 ms) 7: [----------] 16 tests from SaneInput/PmeSolveTest (33 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/1 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffQ/PmeSolveTest.ReproducesOutputs/7 (1 ms) 7: [----------] 8 tests from DifferentEwaldCoeffQ/PmeSolveTest (11 ms total) 7: 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/0 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/3 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEwaldCoeffLJ/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [----------] 8 tests from DifferentEwaldCoeffLJ/PmeSolveTest (19 ms total) 7: 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/0 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/4 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/8 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/9 (3 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/11 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/12 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/13 (1 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/14 (2 ms) 7: [ RUN ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 7: [ OK ] DifferentEpsilonR/PmeSolveTest.ReproducesOutputs/15 (1 ms) 7: [----------] 16 tests from DifferentEpsilonR/PmeSolveTest (29 ms total) 7: 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/1 (3 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/2 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/3 (1 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/6 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/8 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/10 (2 ms) 7: [ RUN ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput1/PmeSplineAndSpreadTest.ReproducesOutputs/11 (2 ms) 7: [----------] 12 tests from SaneInput1/PmeSplineAndSpreadTest (26 ms total) 7: 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/0 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/1 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/2 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/3 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/4 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/5 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/6 (1 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/7 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/8 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/9 (2 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/10 (3 ms) 7: [ RUN ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput2/PmeSplineAndSpreadTest.ReproducesOutputs/11 (3 ms) 7: [----------] 12 tests from SaneInput2/PmeSplineAndSpreadTest (29 ms total) 7: 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/0 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/1 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/2 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/3 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/4 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/5 (8 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/6 (4 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/7 (5 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/8 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/9 (6 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/10 (7 ms) 7: [ RUN ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 7: [ OK ] SaneInput13/PmeSplineAndSpreadTest.ReproducesOutputs/11 (9 ms) 7: [----------] 12 tests from SaneInput13/PmeSplineAndSpreadTest (81 ms total) 7: 7: [----------] Global test environment tear-down 7: [==========] 257 tests from 10 test cases ran. (418 ms total) 7: [ PASSED ] 257 tests. 7/23 Test #7: EwaldUnitTests ................... Passed 0.62 sec test 8 Start 8: FFTUnitTests 8: Test command: /<>/build/openmpi-dp/bin/fft-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/FFTUnitTests.xml" 8: Test timeout computed to be: 30 8: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 8: [==========] Running 14 tests from 4 test cases. 8: [----------] Global test environment set-up. 8: [----------] 2 tests from ManyFFTTest 8: [ RUN ] ManyFFTTest.Complex1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Complex1DLength48Multi5Test (6 ms) 8: [ RUN ] ManyFFTTest.Real1DLength48Multi5Test 8: [ OK ] ManyFFTTest.Real1DLength48Multi5Test (8 ms) 8: [----------] 2 tests from ManyFFTTest (15 ms total) 8: 8: [----------] 1 test from FFTTest 8: [ RUN ] FFTTest.Real2DLength18_15Test 8: [ OK ] FFTTest.Real2DLength18_15Test (3 ms) 8: [----------] 1 test from FFTTest (3 ms total) 8: 8: [----------] 1 test from FFFTest3D 8: [ RUN ] FFFTest3D.Real5_6_9 8: [ OK ] FFFTest3D.Real5_6_9 (2 ms) 8: [----------] 1 test from FFFTest3D (3 ms total) 8: 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/1 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/2 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/3 (2 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Complex/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Complex/4 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/0 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/0 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/1 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/1 (1 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/2 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/2 (0 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/3 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/3 (5 ms) 8: [ RUN ] 7_8_25_36_60/FFTTest1D.Real/4 8: [ OK ] 7_8_25_36_60/FFTTest1D.Real/4 (7 ms) 8: [----------] 10 tests from 7_8_25_36_60/FFTTest1D (19 ms total) 8: 8: [----------] Global test environment tear-down 8: [==========] 14 tests from 4 test cases ran. (40 ms total) 8: [ PASSED ] 14 tests. 8/23 Test #8: FFTUnitTests ..................... Passed 0.19 sec test 9 Start 9: GpuUtilsUnitTests 9: Test command: /<>/build/openmpi-dp/bin/gpu_utils-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/GpuUtilsUnitTests.xml" 9: Test timeout computed to be: 30 9: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 9: [==========] Running 27 tests from 6 test cases. 9: [----------] Global test environment set-up. 9: [----------] 6 tests from HostAllocatorTest/0, where TypeParam = int 9: [ RUN ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/0.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/0.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/0.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/0.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/0.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/0.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/0.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/0.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/0 (0 ms total) 9: 9: [----------] 6 tests from HostAllocatorTest/1, where TypeParam = double 9: [ RUN ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/1.EmptyMemoryAlwaysWorks (1 ms) 9: [ RUN ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/1.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/1.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/1.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/1.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/1.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/1.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/1.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/1 (1 ms total) 9: 9: [----------] 6 tests from HostAllocatorTest/2, where TypeParam = gmx::BasicVector 9: [ RUN ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks 9: [ OK ] HostAllocatorTest/2.EmptyMemoryAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks 9: [ OK ] HostAllocatorTest/2.VectorsWithDefaultHostAllocatorAlwaysWorks (0 ms) 9: [ RUN ] HostAllocatorTest/2.TransfersWithoutPinningWork 9: [ OK ] HostAllocatorTest/2.TransfersWithoutPinningWork (0 ms) 9: [ RUN ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve 9: [ OK ] HostAllocatorTest/2.FillInputAlsoWorksAfterCallingReserve (0 ms) 9: [ RUN ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda 9: [ OK ] HostAllocatorTest/2.ManualPinningOperationsWorkEvenWithoutCuda (0 ms) 9: [ RUN ] HostAllocatorTest/2.StatefulAllocatorUsesMemory 9: [ OK ] HostAllocatorTest/2.StatefulAllocatorUsesMemory (0 ms) 9: [----------] 6 tests from HostAllocatorTest/2 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/0 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 9: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/1 (0 ms total) 9: 9: [----------] 3 tests from AllocatorTest/2, where TypeParam = gmx::Allocator, gmx::HostAllocationPolicy> 9: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 9: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (1 ms) 9: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 9: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 9: [----------] 3 tests from AllocatorTest/2 (1 ms total) 9: 9: [----------] Global test environment tear-down 9: [==========] 27 tests from 6 test cases ran. (2 ms total) 9: [ PASSED ] 27 tests. 9/23 Test #9: GpuUtilsUnitTests ................ Passed 0.15 sec test 10 Start 10: HardwareUnitTests 10: Test command: /<>/build/openmpi-dp/bin/hardware-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/HardwareUnitTests.xml" 10: Test timeout computed to be: 30 10: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 10: [==========] Running 4 tests from 1 test case. 10: [----------] Global test environment set-up. 10: [----------] 4 tests from HardwareTopologyTest 10: [ RUN ] HardwareTopologyTest.Execute 10: [ OK ] HardwareTopologyTest.Execute (8 ms) 10: [ RUN ] HardwareTopologyTest.HwlocExecute 10: [ OK ] HardwareTopologyTest.HwlocExecute (7 ms) 10: [ RUN ] HardwareTopologyTest.ProcessorSelfconsistency 10: [ OK ] HardwareTopologyTest.ProcessorSelfconsistency (7 ms) 10: [ RUN ] HardwareTopologyTest.NumaCacheSelfconsistency 10: [ OK ] HardwareTopologyTest.NumaCacheSelfconsistency (7 ms) 10: [----------] 4 tests from HardwareTopologyTest (29 ms total) 10: 10: [----------] Global test environment tear-down 10: [==========] 4 tests from 1 test case ran. (29 ms total) 10: [ PASSED ] 4 tests. 10/23 Test #10: HardwareUnitTests ................ Passed 0.18 sec test 11 Start 11: MathUnitTests 11: Test command: /<>/build/openmpi-dp/bin/math-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/MathUnitTests.xml" 11: Test timeout computed to be: 30 11: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 11: [==========] Running 31 tests from 4 test cases. 11: [----------] Global test environment set-up. 11: [----------] 21 tests from FunctionTest 11: [ RUN ] FunctionTest.StaticLog2 11: [ OK ] FunctionTest.StaticLog2 (0 ms) 11: [ RUN ] FunctionTest.Log2I32Bit 11: [ OK ] FunctionTest.Log2I32Bit (1 ms) 11: [ RUN ] FunctionTest.Log2I64Bit 11: [ OK ] FunctionTest.Log2I64Bit (0 ms) 11: [ RUN ] FunctionTest.GreatestCommonDivisor 11: [ OK ] FunctionTest.GreatestCommonDivisor (0 ms) 11: [ RUN ] FunctionTest.InvsqrtFloat 11: [ OK ] FunctionTest.InvsqrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvsqrtDouble 11: [ OK ] FunctionTest.InvsqrtDouble (1 ms) 11: [ RUN ] FunctionTest.InvsqrtInteger 11: [ OK ] FunctionTest.InvsqrtInteger (0 ms) 11: [ RUN ] FunctionTest.InvcbrtFloat 11: [ OK ] FunctionTest.InvcbrtFloat (0 ms) 11: [ RUN ] FunctionTest.InvcbrtDouble 11: [ OK ] FunctionTest.InvcbrtDouble (0 ms) 11: [ RUN ] FunctionTest.InvcbrtInteger 11: [ OK ] FunctionTest.InvcbrtInteger (1 ms) 11: [ RUN ] FunctionTest.SixthrootFloat 11: [ OK ] FunctionTest.SixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.SixthrootDouble 11: [ OK ] FunctionTest.SixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.SixthrootInteger 11: [ OK ] FunctionTest.SixthrootInteger (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootFloat 11: [ OK ] FunctionTest.InvsixthrootFloat (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootDouble 11: [ OK ] FunctionTest.InvsixthrootDouble (0 ms) 11: [ RUN ] FunctionTest.InvsixthrootInteger 11: [ OK ] FunctionTest.InvsixthrootInteger (1 ms) 11: [ RUN ] FunctionTest.Powers 11: [ OK ] FunctionTest.Powers (0 ms) 11: [ RUN ] FunctionTest.ErfInvFloat 11: [ OK ] FunctionTest.ErfInvFloat (0 ms) 11: [ RUN ] FunctionTest.ErfInvDouble 11: [ OK ] FunctionTest.ErfInvDouble (0 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesFloat 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesFloat (1 ms) 11: [ RUN ] FunctionTest.ErfAndErfInvAreInversesDouble 11: [ OK ] FunctionTest.ErfAndErfInvAreInversesDouble (0 ms) 11: [----------] 21 tests from FunctionTest (5 ms total) 11: 11: [----------] 2 tests from InvertMatrixTest 11: [ RUN ] InvertMatrixTest.IdentityIsImpotent 11: [ OK ] InvertMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertMatrixTest.ComputesInverse 11: [ OK ] InvertMatrixTest.ComputesInverse (0 ms) 11: [----------] 2 tests from InvertMatrixTest (0 ms total) 11: 11: [----------] 2 tests from InvertBoxMatrixTest 11: [ RUN ] InvertBoxMatrixTest.IdentityIsImpotent 11: [ OK ] InvertBoxMatrixTest.IdentityIsImpotent (0 ms) 11: [ RUN ] InvertBoxMatrixTest.ComputesInverseInPlace 11: [ OK ] InvertBoxMatrixTest.ComputesInverseInPlace (0 ms) 11: [----------] 2 tests from InvertBoxMatrixTest (0 ms total) 11: 11: [----------] 6 tests from RVecTest 11: [ RUN ] RVecTest.CanBeStoredInVector 11: [ OK ] RVecTest.CanBeStoredInVector (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyFrom_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyFrom_rvec (0 ms) 11: [ RUN ] RVecTest.ConvertsImplicitlyTo_rvec 11: [ OK ] RVecTest.ConvertsImplicitlyTo_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAsMutable_rvec 11: [ OK ] RVecTest.WorksAsMutable_rvec (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Array 11: [ OK ] RVecTest.WorksAs_rvec_Array (0 ms) 11: [ RUN ] RVecTest.WorksAs_rvec_Reference 11: [ OK ] RVecTest.WorksAs_rvec_Reference (0 ms) 11: [----------] 6 tests from RVecTest (0 ms total) 11: 11: [----------] Global test environment tear-down 11: [==========] 31 tests from 4 test cases ran. (5 ms total) 11: [ PASSED ] 31 tests. 11/23 Test #11: MathUnitTests .................... Passed 0.16 sec test 12 Start 12: MdrunUtilityUnitTests 12: Test command: /<>/build/openmpi-dp/bin/mdrunutility-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/MdrunUtilityUnitTests.xml" 12: Test timeout computed to be: 30 12: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 12: [==========] Running 17 tests from 1 test case. 12: [----------] Global test environment set-up. 12: [----------] 17 tests from ThreadAffinityTest 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenDisabled 12: [ OK ] ThreadAffinityTest.DoesNothingWhenDisabled (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWhenNotSupported 12: [ OK ] ThreadAffinityTest.DoesNothingWhenNotSupported (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooFewUserSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyUserSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithAutoAndTooManyAutoSetThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithUnknownHardware 12: [ OK ] ThreadAffinityTest.DoesNothingWithUnknownHardware (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooManyThreads 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooManyThreads (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeOffset 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeOffset (0 ms) 12: [ RUN ] ThreadAffinityTest.DoesNothingWithTooLargeStride 12: [ OK ] ThreadAffinityTest.DoesNothingWithTooLargeStride (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithAuto 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced 12: [ OK ] ThreadAffinityTest.PinsSingleThreadWithOffsetWhenForced (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread 12: NOTE: Affinity setting failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithSingleThread (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithAuto 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithAuto (1 ms) 12: [ RUN ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced 12: [ OK ] ThreadAffinityTest.PinsMultipleThreadsWithStrideWhenForced (0 ms) 12: [ RUN ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads 12: [ OK ] ThreadAffinityTest.PinsWithAutoAndFewerAutoSetThreads (1 ms) 12: [ RUN ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing 12: NOTE: Affinity setting for 1/2 threads failed. 12: [ OK ] ThreadAffinityTest.HandlesPinningFailureWithOneThreadFailing (1 ms) 12: [----------] 17 tests from ThreadAffinityTest (7 ms total) 12: 12: [----------] Global test environment tear-down 12: [==========] 17 tests from 1 test case ran. (8 ms total) 12: [ PASSED ] 17 tests. 12/23 Test #12: MdrunUtilityUnitTests ............ Passed 0.16 sec test 13 Start 13: OnlineHelpUnitTests 13: Test command: /<>/build/openmpi-dp/bin/onlinehelp-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/OnlineHelpUnitTests.xml" 13: Test timeout computed to be: 30 13: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 13: [==========] Running 22 tests from 4 test cases. 13: [----------] Global test environment set-up. 13: [----------] 6 tests from TextTableFormatterTest 13: [ RUN ] TextTableFormatterTest.HandlesBasicCase 13: [ OK ] TextTableFormatterTest.HandlesBasicCase (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesEmptyColumnTitles 13: [ OK ] TextTableFormatterTest.HandlesEmptyColumnTitles (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesIndentation 13: [ OK ] TextTableFormatterTest.HandlesIndentation (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesOverflowingLines 13: [ OK ] TextTableFormatterTest.HandlesOverflowingLines (2 ms) 13: [ RUN ] TextTableFormatterTest.HandlesLastColumnFolding 13: [ OK ] TextTableFormatterTest.HandlesLastColumnFolding (0 ms) 13: [ RUN ] TextTableFormatterTest.HandlesEmptyColumns 13: [ OK ] TextTableFormatterTest.HandlesEmptyColumns (0 ms) 13: [----------] 6 tests from TextTableFormatterTest (3 ms total) 13: 13: [----------] 3 tests from HelpManagerTest 13: [ RUN ] HelpManagerTest.HandlesRootTopic 13: [ OK ] HelpManagerTest.HandlesRootTopic (0 ms) 13: [ RUN ] HelpManagerTest.HandlesSubTopics 13: [ OK ] HelpManagerTest.HandlesSubTopics (0 ms) 13: [ RUN ] HelpManagerTest.HandlesInvalidTopics 13: [ OK ] HelpManagerTest.HandlesInvalidTopics (1 ms) 13: [----------] 3 tests from HelpManagerTest (1 ms total) 13: 13: [----------] 2 tests from HelpTopicFormattingTest 13: [ RUN ] HelpTopicFormattingTest.FormatsSimpleTopic 13: [ OK ] HelpTopicFormattingTest.FormatsSimpleTopic (0 ms) 13: [ RUN ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics 13: [ OK ] HelpTopicFormattingTest.FormatsCompositeTopicWithSubTopics (0 ms) 13: [----------] 2 tests from HelpTopicFormattingTest (0 ms total) 13: 13: [----------] 11 tests from HelpWriterContextTest 13: [ RUN ] HelpWriterContextTest.FormatsParagraphs 13: [ OK ] HelpWriterContextTest.FormatsParagraphs (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsRstStyleParagraphs 13: [ OK ] HelpWriterContextTest.FormatsRstStyleParagraphs (0 ms) 13: [ RUN ] HelpWriterContextTest.CleansUpExtraWhitespace 13: [ OK ] HelpWriterContextTest.CleansUpExtraWhitespace (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralText 13: [ OK ] HelpWriterContextTest.FormatsLiteralText (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralTextAtBeginning 13: [ OK ] HelpWriterContextTest.FormatsLiteralTextAtBeginning (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsLiteralTextWithIndentation 13: [ OK ] HelpWriterContextTest.FormatsLiteralTextWithIndentation (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsBulletList 13: [ OK ] HelpWriterContextTest.FormatsBulletList (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsEnumeratedList 13: [ OK ] HelpWriterContextTest.FormatsEnumeratedList (1 ms) 13: [ RUN ] HelpWriterContextTest.FormatsSimpleTable 13: [ OK ] HelpWriterContextTest.FormatsSimpleTable (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsGridTable 13: [ OK ] HelpWriterContextTest.FormatsGridTable (0 ms) 13: [ RUN ] HelpWriterContextTest.FormatsTitles 13: [ OK ] HelpWriterContextTest.FormatsTitles (0 ms) 13: [----------] 11 tests from HelpWriterContextTest (3 ms total) 13: 13: [----------] Global test environment tear-down 13: [==========] 22 tests from 4 test cases ran. (8 ms total) 13: [ PASSED ] 22 tests. 13/23 Test #13: OnlineHelpUnitTests .............. Passed 0.17 sec test 14 Start 14: OptionsUnitTests 14: Test command: /<>/build/openmpi-dp/bin/options-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/OptionsUnitTests.xml" 14: Test timeout computed to be: 30 14: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 14: [==========] Running 110 tests from 18 test cases. 14: [----------] Global test environment set-up. 14: [----------] 5 tests from AbstractOptionStorageTest 14: [ RUN ] AbstractOptionStorageTest.HandlesSetInFinish 14: [ OK ] AbstractOptionStorageTest.HandlesSetInFinish (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesValueRemoval 14: [ OK ] AbstractOptionStorageTest.HandlesValueRemoval (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesValueAddition 14: [ OK ] AbstractOptionStorageTest.HandlesValueAddition (0 ms) 14: [ RUN ] AbstractOptionStorageTest.HandlesTooManyValueAddition 14: [ OK ] AbstractOptionStorageTest.HandlesTooManyValueAddition (0 ms) 14: [ RUN ] AbstractOptionStorageTest.AllowsEmptyValues 14: [ OK ] AbstractOptionStorageTest.AllowsEmptyValues (1 ms) 14: [----------] 5 tests from AbstractOptionStorageTest (1 ms total) 14: 14: [----------] 8 tests from FileNameOptionTest 14: [ RUN ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension 14: [ OK ] FileNameOptionTest.HandlesRequiredDefaultValueWithoutExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesRequiredOptionWithoutValue 14: [ OK ] FileNameOptionTest.HandlesRequiredOptionWithoutValue (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalUnsetOption 14: [ OK ] FileNameOptionTest.HandlesOptionalUnsetOption (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension 14: [ OK ] FileNameOptionTest.HandlesOptionalDefaultValueWithoutExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension 14: [ OK ] FileNameOptionTest.HandlesRequiredCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension 14: [ OK ] FileNameOptionTest.HandlesOptionalCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix 14: [ OK ] FileNameOptionTest.GivesErrorOnUnknownFileSuffix (0 ms) 14: [ RUN ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix 14: [ OK ] FileNameOptionTest.GivesErrorOnInvalidFileSuffix (0 ms) 14: [----------] 8 tests from FileNameOptionTest (0 ms total) 14: 14: [----------] 15 tests from FileNameOptionManagerTest 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtension 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtension (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension 14: [ OK ] FileNameOptionManagerTest.AddsMissingCustomDefaultExtension (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingGenericInputFile (1 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingDefaultInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile 14: [ OK ] FileNameOptionManagerTest.GivesErrorOnMissingRequiredInputFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingDefaultInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified 14: [ OK ] FileNameOptionManagerTest.AcceptsMissingRequiredInputFileIfSpecified (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredDefaultNameBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalDefaultNameBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForRequiredFromDefaultNameOptionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile 14: [ OK ] FileNameOptionManagerTest.AddsMissingExtensionForOptionalFromDefaultNameOptionBasedOnExistingFile (0 ms) 14: [ RUN ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking 14: [ OK ] FileNameOptionManagerTest.DefaultNameOptionWorksWithoutInputChecking (0 ms) 14: [----------] 15 tests from FileNameOptionManagerTest (1 ms total) 14: 14: [----------] 1 test from OptionsTest 14: [ RUN ] OptionsTest.FailsOnNonsafeStorage 14: [ OK ] OptionsTest.FailsOnNonsafeStorage (0 ms) 14: [----------] 1 test from OptionsTest (0 ms total) 14: 14: [----------] 9 tests from OptionsAssignerTest 14: [ RUN ] OptionsAssignerTest.HandlesMissingRequiredParameter 14: [ OK ] OptionsAssignerTest.HandlesMissingRequiredParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue 14: [ OK ] OptionsAssignerTest.HandlesRequiredParameterWithDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesInvalidMultipleParameter 14: [ OK ] OptionsAssignerTest.HandlesInvalidMultipleParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMultipleParameter 14: [ OK ] OptionsAssignerTest.HandlesMultipleParameter (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMissingValue 14: [ OK ] OptionsAssignerTest.HandlesMissingValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesExtraValue 14: [ OK ] OptionsAssignerTest.HandlesExtraValue (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesGroups 14: [ OK ] OptionsAssignerTest.HandlesGroups (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesSections 14: [ OK ] OptionsAssignerTest.HandlesSections (0 ms) 14: [ RUN ] OptionsAssignerTest.HandlesMultipleSources 14: [ OK ] OptionsAssignerTest.HandlesMultipleSources (0 ms) 14: [----------] 9 tests from OptionsAssignerTest (1 ms total) 14: 14: [----------] 4 tests from OptionsAssignerBooleanTest 14: [ RUN ] OptionsAssignerBooleanTest.StoresYesValue 14: [ OK ] OptionsAssignerBooleanTest.StoresYesValue (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue 14: [ OK ] OptionsAssignerBooleanTest.SetsBooleanWithoutExplicitValue (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo 14: [ OK ] OptionsAssignerBooleanTest.ClearsBooleanWithPrefixNo (0 ms) 14: [ RUN ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue 14: [ OK ] OptionsAssignerBooleanTest.HandlesBooleanWithPrefixAndValue (0 ms) 14: [----------] 4 tests from OptionsAssignerBooleanTest (0 ms total) 14: 14: [----------] 13 tests from OptionsAssignerIntegerTest 14: [ RUN ] OptionsAssignerIntegerTest.StoresSingleValue 14: [ OK ] OptionsAssignerIntegerTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesEmptyValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesEmptyValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesInvalidValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesInvalidValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesOverflow 14: [ OK ] OptionsAssignerIntegerTest.HandlesOverflow (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValue 14: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet 14: [ OK ] OptionsAssignerIntegerTest.StoresDefaultValueIfSet (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet 14: [ OK ] OptionsAssignerIntegerTest.HandlesDefaultValueIfSetWhenNotSet (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesBothDefaultValues 14: [ OK ] OptionsAssignerIntegerTest.HandlesBothDefaultValues (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.StoresToVector 14: [ OK ] OptionsAssignerIntegerTest.StoresToVector (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectors 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectors (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorFromSingleValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment 14: [ OK ] OptionsAssignerIntegerTest.HandlesVectorsWithDefaultValueWithInvalidAssignment (0 ms) 14: [----------] 13 tests from OptionsAssignerIntegerTest (0 ms total) 14: 14: [----------] 5 tests from OptionsAssignerDoubleTest 14: [ RUN ] OptionsAssignerDoubleTest.StoresSingleValue 14: [ OK ] OptionsAssignerDoubleTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.StoresValueFromFloat 14: [ OK ] OptionsAssignerDoubleTest.StoresValueFromFloat (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesEmptyValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesEmptyValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesPreSetScaleValue (0 ms) 14: [ RUN ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue 14: [ OK ] OptionsAssignerDoubleTest.HandlesPostSetScaleValue (0 ms) 14: [----------] 5 tests from OptionsAssignerDoubleTest (1 ms total) 14: 14: [----------] 9 tests from OptionsAssignerStringTest 14: [ RUN ] OptionsAssignerStringTest.StoresSingleValue 14: [ OK ] OptionsAssignerStringTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray 14: [ OK ] OptionsAssignerStringTest.HandlesEnumValueFromNullTerminatedArray (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesIncorrectEnumValue 14: [ OK ] OptionsAssignerStringTest.HandlesIncorrectEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.CompletesEnumValue 14: [ OK ] OptionsAssignerStringTest.CompletesEnumValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumWithNoValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumWithNoValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValue 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVariable (0 ms) 14: [ RUN ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector 14: [ OK ] OptionsAssignerStringTest.HandlesEnumDefaultValueFromVector (0 ms) 14: [----------] 9 tests from OptionsAssignerStringTest (0 ms total) 14: 14: [----------] 6 tests from OptionsAssignerEnumTest 14: [ RUN ] OptionsAssignerEnumTest.StoresSingleValue 14: [ OK ] OptionsAssignerEnumTest.StoresSingleValue (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.StoresVectorValues 14: [ OK ] OptionsAssignerEnumTest.StoresVectorValues (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange 14: [ OK ] OptionsAssignerEnumTest.HandlesInitialValueOutOfRange (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValue 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValue (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVariable (0 ms) 14: [ RUN ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector 14: [ OK ] OptionsAssignerEnumTest.HandlesEnumDefaultValueFromVector (0 ms) 14: [----------] 6 tests from OptionsAssignerEnumTest (0 ms total) 14: 14: [----------] 8 tests from RepeatingOptionSectionTest 14: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstance 14: [ OK ] RepeatingOptionSectionTest.HandlesNoInstance (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption 14: [ OK ] RepeatingOptionSectionTest.HandlesNoInstanceWithRequiredOption (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesSingleInstance 14: [ OK ] RepeatingOptionSectionTest.HandlesSingleInstance (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesDefaultValue 14: [ OK ] RepeatingOptionSectionTest.HandlesDefaultValue (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesTwoInstances 14: [ OK ] RepeatingOptionSectionTest.HandlesTwoInstances (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault 14: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithImplicitDefault (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault 14: [ OK ] RepeatingOptionSectionTest.HandlesUnsetOptionWithExplicitDefault (0 ms) 14: [ RUN ] RepeatingOptionSectionTest.HandlesNestedSections 14: [ OK ] RepeatingOptionSectionTest.HandlesNestedSections (0 ms) 14: [----------] 8 tests from RepeatingOptionSectionTest (0 ms total) 14: 14: [----------] 1 test from TimeUnitManagerTest 14: [ RUN ] TimeUnitManagerTest.BasicOperations 14: [ OK ] TimeUnitManagerTest.BasicOperations (0 ms) 14: [----------] 1 test from TimeUnitManagerTest (0 ms total) 14: 14: [----------] 4 tests from TimeUnitBehaviorTest 14: [ RUN ] TimeUnitBehaviorTest.ScalesAssignedOptionValue 14: [ OK ] TimeUnitBehaviorTest.ScalesAssignedOptionValue (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues 14: [ OK ] TimeUnitBehaviorTest.DoesNotScaleDefaultValues (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources 14: [ OK ] TimeUnitBehaviorTest.ScalesUserInputWithMultipleSources (0 ms) 14: [ RUN ] TimeUnitBehaviorTest.TimeUnitOptionWorks 14: [ OK ] TimeUnitBehaviorTest.TimeUnitOptionWorks (0 ms) 14: [----------] 4 tests from TimeUnitBehaviorTest (0 ms total) 14: 14: [----------] 2 tests from TreeValueSupportAssignTest 14: [ RUN ] TreeValueSupportAssignTest.AssignsFromTree 14: [ OK ] TreeValueSupportAssignTest.AssignsFromTree (0 ms) 14: [ RUN ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays 14: [ OK ] TreeValueSupportAssignTest.AssignsFromTreeWithArrays (0 ms) 14: [----------] 2 tests from TreeValueSupportAssignTest (0 ms total) 14: 14: [----------] 1 test from TreeValueSupportAssignErrorTest 14: [ RUN ] TreeValueSupportAssignErrorTest.HandlesInvalidValue 14: [ OK ] TreeValueSupportAssignErrorTest.HandlesInvalidValue (0 ms) 14: [----------] 1 test from TreeValueSupportAssignErrorTest (0 ms total) 14: 14: [----------] 5 tests from TreeValueSupportCheckTest 14: [ RUN ] TreeValueSupportCheckTest.HandlesEmpty 14: [ OK ] TreeValueSupportCheckTest.HandlesEmpty (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesMatchingTree 14: [ OK ] TreeValueSupportCheckTest.HandlesMatchingTree (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree1 14: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree1 (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.HandlesSmallerTree2 14: [ OK ] TreeValueSupportCheckTest.HandlesSmallerTree2 (0 ms) 14: [ RUN ] TreeValueSupportCheckTest.DetectsExtraValue 14: [ OK ] TreeValueSupportCheckTest.DetectsExtraValue (0 ms) 14: [----------] 5 tests from TreeValueSupportCheckTest (0 ms total) 14: 14: [----------] 6 tests from TreeValueSupportAdjustTest 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultVectorValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultVectorValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.FillsDefaultObjectValues 14: [ OK ] TreeValueSupportAdjustTest.FillsDefaultObjectValues (1 ms) 14: [ RUN ] TreeValueSupportAdjustTest.NormalizesValues 14: [ OK ] TreeValueSupportAdjustTest.NormalizesValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.MergesDefaultValues 14: [ OK ] TreeValueSupportAdjustTest.MergesDefaultValues (0 ms) 14: [ RUN ] TreeValueSupportAdjustTest.OrdersValues 14: [ OK ] TreeValueSupportAdjustTest.OrdersValues (0 ms) 14: [----------] 6 tests from TreeValueSupportAdjustTest (1 ms total) 14: 14: [----------] 8 tests from TreeValueSupportTest 14: [ RUN ] TreeValueSupportTest.SupportsBooleanOption 14: [ OK ] TreeValueSupportTest.SupportsBooleanOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsIntegerOption 14: [ OK ] TreeValueSupportTest.SupportsIntegerOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsInt64Option 14: [ OK ] TreeValueSupportTest.SupportsInt64Option (1 ms) 14: [ RUN ] TreeValueSupportTest.SupportsStringOption 14: [ OK ] TreeValueSupportTest.SupportsStringOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsFloatOption 14: [ OK ] TreeValueSupportTest.SupportsFloatOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsDoubleOption 14: [ OK ] TreeValueSupportTest.SupportsDoubleOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsEnumIntOption 14: [ OK ] TreeValueSupportTest.SupportsEnumIntOption (0 ms) 14: [ RUN ] TreeValueSupportTest.SupportsEnumOption 14: [ OK ] TreeValueSupportTest.SupportsEnumOption (0 ms) 14: [----------] 8 tests from TreeValueSupportTest (2 ms total) 14: 14: [----------] Global test environment tear-down 14: [==========] 110 tests from 18 test cases ran. (9 ms total) 14: [ PASSED ] 110 tests. 14/23 Test #14: OptionsUnitTests ................. Passed 0.16 sec test 15 Start 15: RandomUnitTests 15: Test command: /<>/build/openmpi-dp/bin/random-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/RandomUnitTests.xml" 15: Test timeout computed to be: 30 15: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 15: [==========] Running 44 tests from 10 test cases. 15: [----------] Global test environment set-up. 15: [----------] 4 tests from ExponentialDistributionTest 15: [ RUN ] ExponentialDistributionTest.Output 15: [ OK ] ExponentialDistributionTest.Output (0 ms) 15: [ RUN ] ExponentialDistributionTest.Logical 15: [ OK ] ExponentialDistributionTest.Logical (0 ms) 15: [ RUN ] ExponentialDistributionTest.Reset 15: [ OK ] ExponentialDistributionTest.Reset (0 ms) 15: [ RUN ] ExponentialDistributionTest.AltParam 15: [ OK ] ExponentialDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from ExponentialDistributionTest (0 ms total) 15: 15: [----------] 4 tests from GammaDistributionTest 15: [ RUN ] GammaDistributionTest.Output 15: [ OK ] GammaDistributionTest.Output (1 ms) 15: [ RUN ] GammaDistributionTest.Logical 15: [ OK ] GammaDistributionTest.Logical (0 ms) 15: [ RUN ] GammaDistributionTest.Reset 15: [ OK ] GammaDistributionTest.Reset (0 ms) 15: [ RUN ] GammaDistributionTest.AltParam 15: [ OK ] GammaDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from GammaDistributionTest (1 ms total) 15: 15: [----------] 4 tests from NormalDistributionTest 15: [ RUN ] NormalDistributionTest.Output 15: [ OK ] NormalDistributionTest.Output (0 ms) 15: [ RUN ] NormalDistributionTest.Logical 15: [ OK ] NormalDistributionTest.Logical (0 ms) 15: [ RUN ] NormalDistributionTest.Reset 15: [ OK ] NormalDistributionTest.Reset (0 ms) 15: [ RUN ] NormalDistributionTest.AltParam 15: [ OK ] NormalDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from NormalDistributionTest (0 ms total) 15: 15: [----------] 1 test from SeedTest 15: [ RUN ] SeedTest.makeRandomSeed 15: [ OK ] SeedTest.makeRandomSeed (0 ms) 15: [----------] 1 test from SeedTest (0 ms total) 15: 15: [----------] 6 tests from TabulatedNormalDistributionTest 15: [ RUN ] TabulatedNormalDistributionTest.Output14 15: [ OK ] TabulatedNormalDistributionTest.Output14 (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Output16 15: [ OK ] TabulatedNormalDistributionTest.Output16 (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.OutputDouble14 15: [ OK ] TabulatedNormalDistributionTest.OutputDouble14 (1 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Logical 15: [ OK ] TabulatedNormalDistributionTest.Logical (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.Reset 15: [ OK ] TabulatedNormalDistributionTest.Reset (0 ms) 15: [ RUN ] TabulatedNormalDistributionTest.AltParam 15: [ OK ] TabulatedNormalDistributionTest.AltParam (0 ms) 15: [----------] 6 tests from TabulatedNormalDistributionTest (1 ms total) 15: 15: [----------] 1 test from TabulatedNormalDistributionTableTest 15: [ RUN ] TabulatedNormalDistributionTableTest.HasValidProperties 15: [ OK ] TabulatedNormalDistributionTableTest.HasValidProperties (2 ms) 15: [----------] 1 test from TabulatedNormalDistributionTableTest (3 ms total) 15: 15: [----------] 6 tests from ThreeFry2x64Test 15: [ RUN ] ThreeFry2x64Test.Logical 15: [ OK ] ThreeFry2x64Test.Logical (0 ms) 15: [ RUN ] ThreeFry2x64Test.InternalCounterSequence 15: [ OK ] ThreeFry2x64Test.InternalCounterSequence (0 ms) 15: [ RUN ] ThreeFry2x64Test.Reseed 15: [ OK ] ThreeFry2x64Test.Reseed (0 ms) 15: [ RUN ] ThreeFry2x64Test.Discard 15: [ OK ] ThreeFry2x64Test.Discard (0 ms) 15: [ RUN ] ThreeFry2x64Test.InvalidCounter 15: [ OK ] ThreeFry2x64Test.InvalidCounter (0 ms) 15: [ RUN ] ThreeFry2x64Test.ExhaustInternalCounter 15: [ OK ] ThreeFry2x64Test.ExhaustInternalCounter (0 ms) 15: [----------] 6 tests from ThreeFry2x64Test (0 ms total) 15: 15: [----------] 4 tests from UniformIntDistributionTest 15: [ RUN ] UniformIntDistributionTest.Output 15: [ OK ] UniformIntDistributionTest.Output (0 ms) 15: [ RUN ] UniformIntDistributionTest.Logical 15: [ OK ] UniformIntDistributionTest.Logical (0 ms) 15: [ RUN ] UniformIntDistributionTest.Reset 15: [ OK ] UniformIntDistributionTest.Reset (0 ms) 15: [ RUN ] UniformIntDistributionTest.AltParam 15: [ OK ] UniformIntDistributionTest.AltParam (0 ms) 15: [----------] 4 tests from UniformIntDistributionTest (0 ms total) 15: 15: [----------] 5 tests from UniformRealDistributionTest 15: [ RUN ] UniformRealDistributionTest.GenerateCanonical 15: [ OK ] UniformRealDistributionTest.GenerateCanonical (1 ms) 15: [ RUN ] UniformRealDistributionTest.Output 15: [ OK ] UniformRealDistributionTest.Output (0 ms) 15: [ RUN ] UniformRealDistributionTest.Logical 15: [ OK ] UniformRealDistributionTest.Logical (0 ms) 15: [ RUN ] UniformRealDistributionTest.Reset 15: [ OK ] UniformRealDistributionTest.Reset (0 ms) 15: [ RUN ] UniformRealDistributionTest.AltParam 15: [ OK ] UniformRealDistributionTest.AltParam (0 ms) 15: [----------] 5 tests from UniformRealDistributionTest (1 ms total) 15: 15: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Default/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Default/2 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Fast/2 (1 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/0 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/1 (0 ms) 15: [ RUN ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 15: [ OK ] KnownAnswersTest/ThreeFry2x64Test.Using40Rounds/2 (0 ms) 15: [----------] 9 tests from KnownAnswersTest/ThreeFry2x64Test (1 ms total) 15: 15: [----------] Global test environment tear-down 15: [==========] 44 tests from 10 test cases ran. (7 ms total) 15: [ PASSED ] 44 tests. 15/23 Test #15: RandomUnitTests .................. Passed 0.17 sec test 16 Start 16: TableUnitTests 16: Test command: /<>/build/openmpi-dp/bin/table-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/TableUnitTests.xml" 16: Test timeout computed to be: 30 16: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 16: [==========] Running 20 tests from 2 test cases. 16: [----------] Global test environment set-up. 16: [----------] 10 tests from SplineTableTest/0, where TypeParam = gmx::QuadraticSplineTable 16: [ RUN ] SplineTableTest/0.HandlesIncorrectInput 16: [ OK ] SplineTableTest/0.HandlesIncorrectInput (4 ms) 16: [ RUN ] SplineTableTest/0.Sinc 16: [ OK ] SplineTableTest/0.Sinc (2 ms) 16: [ RUN ] SplineTableTest/0.LJ12 16: [ OK ] SplineTableTest/0.LJ12 (37 ms) 16: [ RUN ] SplineTableTest/0.PmeCorrection 16: [ OK ] SplineTableTest/0.PmeCorrection (2 ms) 16: [ RUN ] SplineTableTest/0.HandlesIncorrectNumericalInput 16: [ OK ] SplineTableTest/0.HandlesIncorrectNumericalInput (1 ms) 16: [ RUN ] SplineTableTest/0.NumericalInputPmeCorr 16: [ OK ] SplineTableTest/0.NumericalInputPmeCorr (2 ms) 16: [ RUN ] SplineTableTest/0.TwoFunctions 16: [ OK ] SplineTableTest/0.TwoFunctions (72 ms) 16: [ RUN ] SplineTableTest/0.ThreeFunctions 16: [ OK ] SplineTableTest/0.ThreeFunctions (76 ms) 16: [ RUN ] SplineTableTest/0.Simd 16: [ OK ] SplineTableTest/0.Simd (18 ms) 16: [ RUN ] SplineTableTest/0.SimdTwoFunctions 16: [ OK ] SplineTableTest/0.SimdTwoFunctions (67 ms) 16: [----------] 10 tests from SplineTableTest/0 (283 ms total) 16: 16: [----------] 10 tests from SplineTableTest/1, where TypeParam = gmx::CubicSplineTable 16: [ RUN ] SplineTableTest/1.HandlesIncorrectInput 16: [ OK ] SplineTableTest/1.HandlesIncorrectInput (4 ms) 16: [ RUN ] SplineTableTest/1.Sinc 16: [ OK ] SplineTableTest/1.Sinc (3 ms) 16: [ RUN ] SplineTableTest/1.LJ12 16: [ OK ] SplineTableTest/1.LJ12 (87 ms) 16: [ RUN ] SplineTableTest/1.PmeCorrection 16: [ OK ] SplineTableTest/1.PmeCorrection (3 ms) 16: [ RUN ] SplineTableTest/1.HandlesIncorrectNumericalInput 16: [ OK ] SplineTableTest/1.HandlesIncorrectNumericalInput (1 ms) 16: [ RUN ] SplineTableTest/1.NumericalInputPmeCorr 16: [ OK ] SplineTableTest/1.NumericalInputPmeCorr (2 ms) 16: [ RUN ] SplineTableTest/1.TwoFunctions 16: [ OK ] SplineTableTest/1.TwoFunctions (172 ms) 16: [ RUN ] SplineTableTest/1.ThreeFunctions 16: [ OK ] SplineTableTest/1.ThreeFunctions (184 ms) 16: [ RUN ] SplineTableTest/1.Simd 16: [ OK ] SplineTableTest/1.Simd (41 ms) 16: [ RUN ] SplineTableTest/1.SimdTwoFunctions 16: [ OK ] SplineTableTest/1.SimdTwoFunctions (171 ms) 16: [----------] 10 tests from SplineTableTest/1 (669 ms total) 16: 16: [----------] Global test environment tear-down 16: [==========] 20 tests from 2 test cases ran. (952 ms total) 16: [ PASSED ] 20 tests. 16/23 Test #16: TableUnitTests ................... Passed 1.10 sec test 17 Start 17: TaskAssignmentUnitTests 17: Test command: /<>/build/openmpi-dp/bin/taskassignment-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/TaskAssignmentUnitTests.xml" 17: Test timeout computed to be: 30 17: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 17: [==========] Running 3 tests from 1 test case. 17: [----------] Global test environment set-up. 17: [----------] 3 tests from GpuIdStringHandlingTest 17: [ RUN ] GpuIdStringHandlingTest.ParsingAndReconstructionWork 17: [ OK ] GpuIdStringHandlingTest.ParsingAndReconstructionWork (1 ms) 17: [ RUN ] GpuIdStringHandlingTest.EmptyStringCanBeValid 17: [ OK ] GpuIdStringHandlingTest.EmptyStringCanBeValid (0 ms) 17: [ RUN ] GpuIdStringHandlingTest.InvalidInputsThrow 17: [ OK ] GpuIdStringHandlingTest.InvalidInputsThrow (0 ms) 17: [----------] 3 tests from GpuIdStringHandlingTest (1 ms total) 17: 17: [----------] Global test environment tear-down 17: [==========] 3 tests from 1 test case ran. (1 ms total) 17: [ PASSED ] 3 tests. 17/23 Test #17: TaskAssignmentUnitTests .......... Passed 0.15 sec test 18 Start 18: UtilityUnitTests 18: Test command: /<>/build/openmpi-dp/bin/utility-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/UtilityUnitTests.xml" 18: Test timeout computed to be: 30 18: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 18: [==========] Running 307 tests from 49 test cases. 18: [----------] Global test environment set-up. 18: [----------] 4 tests from AllocatorTest/0, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/0.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/0.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/0.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/0.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/0.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/0 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/1, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/1.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/1.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/1.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/1.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/1.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/1 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/2, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/2.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/2.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/2.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/2.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/2.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/2 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/3, where TypeParam = gmx::Allocator 18: [ RUN ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/3.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/3.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/3.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/3.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/3.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/3 (1 ms total) 18: 18: [----------] 4 tests from AllocatorTest/4, where TypeParam = gmx::Allocator, gmx::AlignedAllocationPolicy> 18: [ RUN ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/4.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/4.VectorAllocatesAndResizesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/4.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/4.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/4.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/4 (0 ms total) 18: 18: [----------] 4 tests from AllocatorTest/5, where TypeParam = gmx::Allocator, gmx::PageAlignedAllocationPolicy> 18: [ RUN ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment 18: [ OK ] AllocatorTest/5.AllocatorAlignAllocatesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment 18: [ OK ] AllocatorTest/5.VectorAllocatesAndResizesWithAlignment (1 ms) 18: [ RUN ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment 18: [ OK ] AllocatorTest/5.VectorAllocatesAndReservesWithAlignment (0 ms) 18: [ RUN ] AllocatorTest/5.StatelessAllocatorUsesNoMemory 18: [ OK ] AllocatorTest/5.StatelessAllocatorUsesNoMemory (0 ms) 18: [----------] 4 tests from AllocatorTest/5 (1 ms total) 18: 18: [----------] 1 test from EmptyArrayRefTest 18: [ RUN ] EmptyArrayRefTest.IsEmpty 18: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 18: [----------] 1 test from EmptyArrayRefTest (0 ms total) 18: 18: [----------] 1 test from EmptyConstArrayRefTest 18: [ RUN ] EmptyConstArrayRefTest.IsEmpty 18: [ OK ] EmptyConstArrayRefTest.IsEmpty (0 ms) 18: [----------] 1 test from EmptyConstArrayRefTest (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/0.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/0.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/0.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/0.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/0.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/0 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/1.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/1.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/1.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/1.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/1.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/1 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/2.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/2.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/2.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/2.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/2.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/2 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/3.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/3.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/3.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/3.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/3.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/3 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/4, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/4.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/4.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/4.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/4.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/4.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/4.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/4 (1 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/5, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/5.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/5.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/5.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/5.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/5.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/5.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/5 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/6, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/6.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/6.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/6.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/6.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/6.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/6.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/6 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/7, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/7.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/7.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/7.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/7.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/7.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/7.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/7 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/8, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/8.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/8.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/8.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/8.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/8.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/8.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/8 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/9, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/9.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/9.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/9.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/9.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/9.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/9.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/9 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/10, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/10.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/10.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/10.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/10.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/10.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/10.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/10 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/11, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/11.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/11.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/11.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/11.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/11.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/11.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/11 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/12, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/12.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/12.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/12.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/12.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/12.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/12.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/12 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/13, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/13.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/13.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/13.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/13.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/13.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/13.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/13 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/14, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/14.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/14.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/14.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/14.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/14.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/14.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/14 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/15, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/15.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/15.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/15.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/15.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/15.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/15.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/15 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/16, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/16.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/16.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/16.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/16.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/16.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/16.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/16 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/17, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/17.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/17.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/17.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/17.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/17.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/17.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/17 (1 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/18, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/18.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/18.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/18.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/18.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/18.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/18.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/18 (0 ms total) 18: 18: [----------] 9 tests from ArrayRefTest/19, where TypeParam = gmx::ArrayRef 18: [ RUN ] ArrayRefTest/19.MakeWithAssignmentWorks 18: [ OK ] ArrayRefTest/19.MakeWithAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks 18: [ OK ] ArrayRefTest/19.MakeWithNonConstAssignmentWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructWithTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructWithNonConstTemplateConstructorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromPointersWorks 18: [ OK ] ArrayRefTest/19.ConstructFromPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromNonConstPointersWorks 18: [ OK ] ArrayRefTest/19.ConstructFromNonConstPointersWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromVectorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromNonConstVectorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromNonConstVectorWorks (0 ms) 18: [ RUN ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks 18: [ OK ] ArrayRefTest/19.ConstructFromStructFieldWithTemplateConstructorWorks (0 ms) 18: [----------] 9 tests from ArrayRefTest/19 (0 ms total) 18: 18: [----------] 4 tests from KeyValueTreeSerializerTest 18: [ RUN ] KeyValueTreeSerializerTest.EmptyTree 18: [ OK ] KeyValueTreeSerializerTest.EmptyTree (0 ms) 18: [ RUN ] KeyValueTreeSerializerTest.SimpleObject 18: [ OK ] KeyValueTreeSerializerTest.SimpleObject (0 ms) 18: [ RUN ] KeyValueTreeSerializerTest.ObjectWithArrays 18: [ OK ] KeyValueTreeSerializerTest.ObjectWithArrays (1 ms) 18: [ RUN ] KeyValueTreeSerializerTest.ObjectWithObjects 18: [ OK ] KeyValueTreeSerializerTest.ObjectWithObjects (0 ms) 18: [----------] 4 tests from KeyValueTreeSerializerTest (1 ms total) 18: 18: [----------] 6 tests from TreeValueTransformTest 18: [ RUN ] TreeValueTransformTest.SimpleTransforms 18: [ OK ] TreeValueTransformTest.SimpleTransforms (0 ms) 18: [ RUN ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive 18: [ OK ] TreeValueTransformTest.SimpleTransformsCaseAndDashInsensitive (0 ms) 18: [ RUN ] TreeValueTransformTest.SimpleTransformsToObject 18: [ OK ] TreeValueTransformTest.SimpleTransformsToObject (1 ms) 18: [ RUN ] TreeValueTransformTest.ObjectFromString 18: [ OK ] TreeValueTransformTest.ObjectFromString (0 ms) 18: [ RUN ] TreeValueTransformTest.ObjectFromMultipleStrings 18: [ OK ] TreeValueTransformTest.ObjectFromMultipleStrings (0 ms) 18: [ RUN ] TreeValueTransformTest.ScopedTransformRules 18: [ OK ] TreeValueTransformTest.ScopedTransformRules (0 ms) 18: [----------] 6 tests from TreeValueTransformTest (1 ms total) 18: 18: [----------] 1 test from TreeValueTransformErrorTest 18: [ RUN ] TreeValueTransformErrorTest.ConversionError 18: [ OK ] TreeValueTransformErrorTest.ConversionError (1 ms) 18: [----------] 1 test from TreeValueTransformErrorTest (1 ms total) 18: 18: [----------] 5 tests from LoggerTest 18: [ RUN ] LoggerTest.EmptyLoggerWorks 18: [ OK ] LoggerTest.EmptyLoggerWorks (0 ms) 18: [ RUN ] LoggerTest.LogsToStream 18: [ OK ] LoggerTest.LogsToStream (0 ms) 18: [ RUN ] LoggerTest.LogsToFile 18: [ OK ] LoggerTest.LogsToFile (1 ms) 18: [ RUN ] LoggerTest.LevelFilteringWorks 18: [ OK ] LoggerTest.LevelFilteringWorks (0 ms) 18: [ RUN ] LoggerTest.LogsToMultipleStreams 18: [ OK ] LoggerTest.LogsToMultipleStreams (0 ms) 18: [----------] 5 tests from LoggerTest (1 ms total) 18: 18: [----------] 4 tests from MutexBasicTest 18: [ RUN ] MutexBasicTest.CanBeMade 18: [ OK ] MutexBasicTest.CanBeMade (0 ms) 18: [ RUN ] MutexBasicTest.CanBeLocked 18: [ OK ] MutexBasicTest.CanBeLocked (0 ms) 18: [ RUN ] MutexBasicTest.CanBeTryLocked 18: [ OK ] MutexBasicTest.CanBeTryLocked (0 ms) 18: [ RUN ] MutexBasicTest.CanBeUsedInLockGuard 18: [ OK ] MutexBasicTest.CanBeUsedInLockGuard (0 ms) 18: [----------] 4 tests from MutexBasicTest (0 ms total) 18: 18: [----------] 3 tests from MutexTaskTest 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithLock 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithLock (1 ms) 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnOtherThread (0 ms) 18: [ RUN ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread 18: [ OK ] MutexTaskTest.MutualExclusionWorksWithTryLockOnSameThread (0 ms) 18: [----------] 3 tests from MutexTaskTest (1 ms total) 18: 18: [----------] 2 tests from PathTest 18: [ RUN ] PathTest.StripSourcePrefixWorks 18: [ OK ] PathTest.StripSourcePrefixWorks (0 ms) 18: [ RUN ] PathTest.ConcatenateBeforeExtensionWorks 18: [ OK ] PathTest.ConcatenateBeforeExtensionWorks (0 ms) 18: [----------] 2 tests from PathTest (0 ms total) 18: 18: [----------] 7 tests from StringUtilityTest 18: [ RUN ] StringUtilityTest.StartsWith 18: [ OK ] StringUtilityTest.StartsWith (0 ms) 18: [ RUN ] StringUtilityTest.EndsWith 18: [ OK ] StringUtilityTest.EndsWith (0 ms) 18: [ RUN ] StringUtilityTest.StripSuffixIfPresent 18: [ OK ] StringUtilityTest.StripSuffixIfPresent (0 ms) 18: [ RUN ] StringUtilityTest.StripString 18: [ OK ] StringUtilityTest.StripString (0 ms) 18: [ RUN ] StringUtilityTest.SplitString 18: [ OK ] StringUtilityTest.SplitString (0 ms) 18: [ RUN ] StringUtilityTest.SplitDelimitedString 18: [ OK ] StringUtilityTest.SplitDelimitedString (0 ms) 18: [ RUN ] StringUtilityTest.SplitAndTrimDelimitedString 18: [ OK ] StringUtilityTest.SplitAndTrimDelimitedString (1 ms) 18: [----------] 7 tests from StringUtilityTest (1 ms total) 18: 18: [----------] 2 tests from FormatStringTest 18: [ RUN ] FormatStringTest.HandlesBasicFormatting 18: [ OK ] FormatStringTest.HandlesBasicFormatting (0 ms) 18: [ RUN ] FormatStringTest.HandlesLongStrings 18: [ OK ] FormatStringTest.HandlesLongStrings (0 ms) 18: [----------] 2 tests from FormatStringTest (0 ms total) 18: 18: [----------] 1 test from StringFormatterTest 18: [ RUN ] StringFormatterTest.HandlesBasicFormatting 18: [ OK ] StringFormatterTest.HandlesBasicFormatting (0 ms) 18: [----------] 1 test from StringFormatterTest (0 ms total) 18: 18: [----------] 1 test from formatAndJoinTest 18: [ RUN ] formatAndJoinTest.Works 18: [ OK ] formatAndJoinTest.Works (0 ms) 18: [----------] 1 test from formatAndJoinTest (0 ms total) 18: 18: [----------] 1 test from JoinStringsTest 18: [ RUN ] JoinStringsTest.Works 18: [ OK ] JoinStringsTest.Works (0 ms) 18: [----------] 1 test from JoinStringsTest (0 ms total) 18: 18: [----------] 6 tests from ReplaceAllTest 18: [ RUN ] ReplaceAllTest.HandlesEmptyStrings 18: [ OK ] ReplaceAllTest.HandlesEmptyStrings (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesNoMatches 18: [ OK ] ReplaceAllTest.HandlesNoMatches (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesMatchesAtEnds 18: [ OK ] ReplaceAllTest.HandlesMatchesAtEnds (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesMultipleMatches 18: [ OK ] ReplaceAllTest.HandlesMultipleMatches (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesWordBoundaries 18: [ OK ] ReplaceAllTest.HandlesWordBoundaries (0 ms) 18: [ RUN ] ReplaceAllTest.HandlesPossibleRecursiveMatches 18: [ OK ] ReplaceAllTest.HandlesPossibleRecursiveMatches (0 ms) 18: [----------] 6 tests from ReplaceAllTest (0 ms total) 18: 18: [----------] 10 tests from TextLineWrapperTest 18: [ RUN ] TextLineWrapperTest.HandlesEmptyStrings 18: [ OK ] TextLineWrapperTest.HandlesEmptyStrings (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesTrailingWhitespace 18: [ OK ] TextLineWrapperTest.HandlesTrailingWhitespace (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesTrailingNewlines 18: [ OK ] TextLineWrapperTest.HandlesTrailingNewlines (0 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectly 18: [ OK ] TextLineWrapperTest.WrapsCorrectly (1 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks 18: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExistingBreaks (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesIndent 18: [ OK ] TextLineWrapperTest.HandlesIndent (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesIndentWithEmptyLines 18: [ OK ] TextLineWrapperTest.HandlesIndentWithEmptyLines (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesHangingIndent 18: [ OK ] TextLineWrapperTest.HandlesHangingIndent (0 ms) 18: [ RUN ] TextLineWrapperTest.HandlesContinuationCharacter 18: [ OK ] TextLineWrapperTest.HandlesContinuationCharacter (0 ms) 18: [ RUN ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace 18: [ OK ] TextLineWrapperTest.WrapsCorrectlyWithExtraWhitespace (0 ms) 18: [----------] 10 tests from TextLineWrapperTest (1 ms total) 18: 18: [----------] 6 tests from TextWriterTest 18: [ RUN ] TextWriterTest.WritesLines 18: [ OK ] TextWriterTest.WritesLines (0 ms) 18: [ RUN ] TextWriterTest.WritesLinesInParts 18: [ OK ] TextWriterTest.WritesLinesInParts (1 ms) 18: [ RUN ] TextWriterTest.WritesWrappedLines 18: [ OK ] TextWriterTest.WritesWrappedLines (0 ms) 18: [ RUN ] TextWriterTest.WritesLinesInPartsWithWrapper 18: [ OK ] TextWriterTest.WritesLinesInPartsWithWrapper (0 ms) 18: [ RUN ] TextWriterTest.TracksNewlines 18: [ OK ] TextWriterTest.TracksNewlines (0 ms) 18: [ RUN ] TextWriterTest.PreservesTrailingWhitespace 18: [ OK ] TextWriterTest.PreservesTrailingWhitespace (0 ms) 18: [----------] 6 tests from TextWriterTest (1 ms total) 18: 18: [----------] 1 test from TypeTraitsTest 18: [ RUN ] TypeTraitsTest.IsIntegralConstant 18: [ OK ] TypeTraitsTest.IsIntegralConstant (0 ms) 18: [----------] 1 test from TypeTraitsTest (0 ms total) 18: 18: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitBit/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest32_11/BitmaskTest32.Union/0 18: [ OK ] BitmaskTest32_11/BitmaskTest32.Union/0 (0 ms) 18: [----------] 5 tests from BitmaskTest32_11/BitmaskTest32 (0 ms total) 18: 18: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.SetAndClear/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitBit/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.InitLowBits/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Disjoint/1 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/0 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/0 (0 ms) 18: [ RUN ] BitmaskTest64_10_42/BitmaskTest64.Union/1 18: [ OK ] BitmaskTest64_10_42/BitmaskTest64.Union/1 (0 ms) 18: [----------] 10 tests from BitmaskTest64_10_42/BitmaskTest64 (0 ms total) 18: 18: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.SetAndClear/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitBit/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.InitLowBits/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/0 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Disjoint/1 (0 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/0 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/0 (1 ms) 18: [ RUN ] BitmaskTest128_9_78/BitmaskTest128.Union/1 18: [ OK ] BitmaskTest128_9_78/BitmaskTest128.Union/1 (0 ms) 18: [----------] 10 tests from BitmaskTest128_9_78/BitmaskTest128 (1 ms total) 18: 18: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/0 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDefaultPolicy/2 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/0 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithAsyncLaunchPolicy/2 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/0 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/1 (0 ms) 18: [ RUN ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 18: [ OK ] WithAndWithoutMutex/DifferentTasksTest.StdAsyncWorksWithDeferredLaunchPolicy/2 (0 ms) 18: [----------] 9 tests from WithAndWithoutMutex/DifferentTasksTest (1 ms total) 18: 18: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/0 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/1 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/2 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/3 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/4 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/5 (0 ms) 18: [ RUN ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 18: [ OK ] ParsesLinesDifferently/TextReaderTest.UsingDifferentConfigurations/6 (0 ms) 18: [----------] 7 tests from ParsesLinesDifferently/TextReaderTest (1 ms total) 18: 18: [----------] Global test environment tear-down 18: [==========] 307 tests from 49 test cases ran. (17 ms total) 18: [ PASSED ] 307 tests. 18/23 Test #18: UtilityUnitTests ................. Passed 0.19 sec test 19 Start 19: FileIOTests 19: Test command: /<>/build/openmpi-dp/bin/fileio-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/FileIOTests.xml" 19: Test timeout computed to be: 30 19: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 19: [==========] Running 15 tests from 3 test cases. 19: [----------] Global test environment set-up. 19: [----------] 9 tests from ReadTest 19: [ RUN ] ReadTest.get_eint_ReadsInteger 19: [ OK ] ReadTest.get_eint_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_eint_WarnsAboutFloat 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side '0.8' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint_WarnsAboutFloat (0 ms) 19: [ RUN ] ReadTest.get_eint_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint_WarnsAboutString (0 ms) 19: [ RUN ] ReadTest.get_eint64_ReadsInteger 19: [ OK ] ReadTest.get_eint64_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_eint64_WarnsAboutFloat 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side '0.8' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint64_WarnsAboutFloat (0 ms) 19: [ RUN ] ReadTest.get_eint64_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not an 19: integer value 19: 19: 19: [ OK ] ReadTest.get_eint64_WarnsAboutString (0 ms) 19: [ RUN ] ReadTest.get_ereal_ReadsInteger 19: [ OK ] ReadTest.get_ereal_ReadsInteger (0 ms) 19: [ RUN ] ReadTest.get_ereal_ReadsFloat 19: [ OK ] ReadTest.get_ereal_ReadsFloat (0 ms) 19: [ RUN ] ReadTest.get_ereal_WarnsAboutString 19: 19: ERROR 1 [file unknown, line 0]: 19: Right hand side 'hello' for parameter 'test' in parameter file is not a 19: real value 19: 19: 19: [ OK ] ReadTest.get_ereal_WarnsAboutString (0 ms) 19: [----------] 9 tests from ReadTest (1 ms total) 19: 19: [----------] 2 tests from TngTest 19: [ RUN ] TngTest.CanOpenTngFile 19: [ OK ] TngTest.CanOpenTngFile (0 ms) 19: [ RUN ] TngTest.CloseBeforeOpenIsNotFatal 19: [ OK ] TngTest.CloseBeforeOpenIsNotFatal (0 ms) 19: [----------] 2 tests from TngTest (0 ms total) 19: 19: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/0 (1 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/1 (1 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/2 (4 ms) 19: [ RUN ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 19: [ OK ] WithDifferentFormats/StructureIORoundtripTest.ReadWriteTpsConf/3 (0 ms) 19: [----------] 4 tests from WithDifferentFormats/StructureIORoundtripTest (6 ms total) 19: 19: [----------] Global test environment tear-down 19: [==========] 15 tests from 3 test cases ran. (8 ms total) 19: [ PASSED ] 15 tests. 19/23 Test #19: FileIOTests ...................... Passed 0.17 sec test 20 Start 20: PullTest 20: Test command: /<>/build/openmpi-dp/bin/pull-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/PullTest.xml" 20: Test timeout computed to be: 30 20: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 20: [==========] Running 5 tests from 1 test case. 20: [----------] Global test environment set-up. 20: [----------] 5 tests from PullTest 20: [ RUN ] PullTest.MaxPullDistanceXyzScrewBox 20: [ OK ] PullTest.MaxPullDistanceXyzScrewBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzCubicBox 20: [ OK ] PullTest.MaxPullDistanceXyzCubicBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzTricBox 20: [ OK ] PullTest.MaxPullDistanceXyzTricBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXyzLongBox 20: [ OK ] PullTest.MaxPullDistanceXyzLongBox (0 ms) 20: [ RUN ] PullTest.MaxPullDistanceXySkewedBox 20: [ OK ] PullTest.MaxPullDistanceXySkewedBox (0 ms) 20: [----------] 5 tests from PullTest (0 ms total) 20: 20: [----------] Global test environment tear-down 20: [==========] 5 tests from 1 test case ran. (0 ms total) 20: [ PASSED ] 5 tests. 20/23 Test #20: PullTest ......................... Passed 0.15 sec test 21 Start 21: AwhTest 21: Test command: /<>/build/openmpi-dp/bin/awh-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/AwhTest.xml" 21: Test timeout computed to be: 30 21: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 21: [==========] Running 12 tests from 4 test cases. 21: [----------] Global test environment set-up. 21: [----------] 1 test from BiasTest 21: [ RUN ] BiasTest.DetectsCovering 21: [ OK ] BiasTest.DetectsCovering (1 ms) 21: [----------] 1 test from BiasTest (1 ms total) 21: 21: [----------] 1 test from gridTest 21: [ RUN ] gridTest.neighborhood 21: [ OK ] gridTest.neighborhood (1 ms) 21: [----------] 1 test from gridTest (1 ms total) 21: 21: [----------] 8 tests from WithParameters/BiasTest 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/0 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/0 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/1 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/1 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/2 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/2 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/3 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/3 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/4 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/4 (0 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/5 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/5 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/6 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/6 (1 ms) 21: [ RUN ] WithParameters/BiasTest.ForcesBiasPmf/7 21: [ OK ] WithParameters/BiasTest.ForcesBiasPmf/7 (0 ms) 21: [----------] 8 tests from WithParameters/BiasTest (5 ms total) 21: 21: [----------] 2 tests from WithParameters/BiasStateTest 21: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/0 21: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/0 (1 ms) 21: [ RUN ] WithParameters/BiasStateTest.InitializesFromFile/1 21: [ OK ] WithParameters/BiasStateTest.InitializesFromFile/1 (0 ms) 21: [----------] 2 tests from WithParameters/BiasStateTest (1 ms total) 21: 21: [----------] Global test environment tear-down 21: [==========] 12 tests from 4 test cases ran. (8 ms total) 21: [ PASSED ] 12 tests. 21/23 Test #21: AwhTest .......................... Passed 0.16 sec test 22 Start 22: SimdUnitTests 22: Test command: /<>/build/openmpi-dp/bin/simd-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/SimdUnitTests.xml" 22: Test timeout computed to be: 30 22: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 22: [==========] Running 236 tests from 19 test cases. 22: [----------] Global test environment set-up. 22: [----------] 6 tests from SimdBootstrapTest 22: [ RUN ] SimdBootstrapTest.loadStore 22: [ OK ] SimdBootstrapTest.loadStore (0 ms) 22: [ RUN ] SimdBootstrapTest.loadU 22: [ OK ] SimdBootstrapTest.loadU (0 ms) 22: [ RUN ] SimdBootstrapTest.storeU 22: [ OK ] SimdBootstrapTest.storeU (0 ms) 22: [ RUN ] SimdBootstrapTest.loadStoreI 22: [ OK ] SimdBootstrapTest.loadStoreI (0 ms) 22: [ RUN ] SimdBootstrapTest.loadUI 22: [ OK ] SimdBootstrapTest.loadUI (0 ms) 22: [ RUN ] SimdBootstrapTest.storeUI 22: [ OK ] SimdBootstrapTest.storeUI (0 ms) 22: [----------] 6 tests from SimdBootstrapTest (0 ms total) 22: 22: [----------] 1 test from SimdTest 22: [ RUN ] SimdTest.GmxAligned 22: [ OK ] SimdTest.GmxAligned (0 ms) 22: [----------] 1 test from SimdTest (0 ms total) 22: 22: [----------] 42 tests from SimdFloatingpointTest 22: [ RUN ] SimdFloatingpointTest.setZero 22: [ OK ] SimdFloatingpointTest.setZero (0 ms) 22: [ RUN ] SimdFloatingpointTest.set 22: [ OK ] SimdFloatingpointTest.set (1 ms) 22: [ RUN ] SimdFloatingpointTest.add 22: [ OK ] SimdFloatingpointTest.add (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskAdd 22: [ OK ] SimdFloatingpointTest.maskAdd (0 ms) 22: [ RUN ] SimdFloatingpointTest.sub 22: [ OK ] SimdFloatingpointTest.sub (0 ms) 22: [ RUN ] SimdFloatingpointTest.mul 22: [ OK ] SimdFloatingpointTest.mul (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzMul 22: [ OK ] SimdFloatingpointTest.maskzMul (0 ms) 22: [ RUN ] SimdFloatingpointTest.fma 22: [ OK ] SimdFloatingpointTest.fma (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzFma 22: [ OK ] SimdFloatingpointTest.maskzFma (0 ms) 22: [ RUN ] SimdFloatingpointTest.fms 22: [ OK ] SimdFloatingpointTest.fms (0 ms) 22: [ RUN ] SimdFloatingpointTest.fnma 22: [ OK ] SimdFloatingpointTest.fnma (0 ms) 22: [ RUN ] SimdFloatingpointTest.fnms 22: [ OK ] SimdFloatingpointTest.fnms (0 ms) 22: [ RUN ] SimdFloatingpointTest.abs 22: [ OK ] SimdFloatingpointTest.abs (0 ms) 22: [ RUN ] SimdFloatingpointTest.neg 22: [ OK ] SimdFloatingpointTest.neg (0 ms) 22: [ RUN ] SimdFloatingpointTest.and 22: [ OK ] SimdFloatingpointTest.and (0 ms) 22: [ RUN ] SimdFloatingpointTest.or 22: [ OK ] SimdFloatingpointTest.or (0 ms) 22: [ RUN ] SimdFloatingpointTest.xor 22: [ OK ] SimdFloatingpointTest.xor (0 ms) 22: [ RUN ] SimdFloatingpointTest.andNot 22: [ OK ] SimdFloatingpointTest.andNot (0 ms) 22: [ RUN ] SimdFloatingpointTest.max 22: [ OK ] SimdFloatingpointTest.max (0 ms) 22: [ RUN ] SimdFloatingpointTest.min 22: [ OK ] SimdFloatingpointTest.min (0 ms) 22: [ RUN ] SimdFloatingpointTest.round 22: [ OK ] SimdFloatingpointTest.round (0 ms) 22: [ RUN ] SimdFloatingpointTest.roundMode 22: [ OK ] SimdFloatingpointTest.roundMode (0 ms) 22: [ RUN ] SimdFloatingpointTest.trunc 22: [ OK ] SimdFloatingpointTest.trunc (0 ms) 22: [ RUN ] SimdFloatingpointTest.frexp 22: [ OK ] SimdFloatingpointTest.frexp (0 ms) 22: [ RUN ] SimdFloatingpointTest.ldexp 22: [ OK ] SimdFloatingpointTest.ldexp (0 ms) 22: [ RUN ] SimdFloatingpointTest.rsqrt 22: [ OK ] SimdFloatingpointTest.rsqrt (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzRsqrt 22: [ OK ] SimdFloatingpointTest.maskzRsqrt (0 ms) 22: [ RUN ] SimdFloatingpointTest.rcp 22: [ OK ] SimdFloatingpointTest.rcp (0 ms) 22: [ RUN ] SimdFloatingpointTest.maskzRcp 22: [ OK ] SimdFloatingpointTest.maskzRcp (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpEqAndSelectByMask 22: [ OK ] SimdFloatingpointTest.cmpEqAndSelectByMask (0 ms) 22: [ RUN ] SimdFloatingpointTest.selectByNotMask 22: [ OK ] SimdFloatingpointTest.selectByNotMask (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpNe 22: [ OK ] SimdFloatingpointTest.cmpNe (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpLe 22: [ OK ] SimdFloatingpointTest.cmpLe (0 ms) 22: [ RUN ] SimdFloatingpointTest.cmpLt 22: [ OK ] SimdFloatingpointTest.cmpLt (0 ms) 22: [ RUN ] SimdFloatingpointTest.testBits 22: [ OK ] SimdFloatingpointTest.testBits (0 ms) 22: [ RUN ] SimdFloatingpointTest.andB 22: [ OK ] SimdFloatingpointTest.andB (0 ms) 22: [ RUN ] SimdFloatingpointTest.orB 22: [ OK ] SimdFloatingpointTest.orB (0 ms) 22: [ RUN ] SimdFloatingpointTest.anyTrueB 22: [ OK ] SimdFloatingpointTest.anyTrueB (0 ms) 22: [ RUN ] SimdFloatingpointTest.blend 22: [ OK ] SimdFloatingpointTest.blend (0 ms) 22: [ RUN ] SimdFloatingpointTest.reduce 22: [ OK ] SimdFloatingpointTest.reduce (0 ms) 22: [ RUN ] SimdFloatingpointTest.cvtFloat2Double 22: [ OK ] SimdFloatingpointTest.cvtFloat2Double (0 ms) 22: [ RUN ] SimdFloatingpointTest.cvtDouble2Float 22: [ OK ] SimdFloatingpointTest.cvtDouble2Float (0 ms) 22: [----------] 42 tests from SimdFloatingpointTest (1 ms total) 22: 22: [----------] 13 tests from SimdFloatingpointUtilTest 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose4 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose4 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadUTranspose3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterStoreU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterStoreU3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterIncrU3Overlapping (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3 (1 ms) 22: [ RUN ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping 22: [ OK ] SimdFloatingpointUtilTest.transposeScatterDecrU3Overlapping (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.expandScalarsToTriplets 22: [ OK ] SimdFloatingpointUtilTest.expandScalarsToTriplets (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose4 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadBySimdIntTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 22: [ OK ] SimdFloatingpointUtilTest.gatherLoadUBySimdIntTranspose2 (0 ms) 22: [ RUN ] SimdFloatingpointUtilTest.reduceIncr4Sum 22: [ OK ] SimdFloatingpointUtilTest.reduceIncr4Sum (0 ms) 22: [----------] 13 tests from SimdFloatingpointUtilTest (1 ms total) 22: 22: [----------] 3 tests from SimdVectorOperationsTest 22: [ RUN ] SimdVectorOperationsTest.iprod 22: [ OK ] SimdVectorOperationsTest.iprod (0 ms) 22: [ RUN ] SimdVectorOperationsTest.norm2 22: [ OK ] SimdVectorOperationsTest.norm2 (0 ms) 22: [ RUN ] SimdVectorOperationsTest.cprod 22: [ OK ] SimdVectorOperationsTest.cprod (0 ms) 22: [----------] 3 tests from SimdVectorOperationsTest (0 ms total) 22: 22: [----------] 45 tests from SimdMathTest 22: [ RUN ] SimdMathTest.copysign 22: [ OK ] SimdMathTest.copysign (0 ms) 22: [ RUN ] SimdMathTest.invsqrt 22: [ OK ] SimdMathTest.invsqrt (1 ms) 22: [ RUN ] SimdMathTest.maskzInvsqrt 22: [ OK ] SimdMathTest.maskzInvsqrt (0 ms) 22: [ RUN ] SimdMathTest.invsqrtPair 22: [ OK ] SimdMathTest.invsqrtPair (1 ms) 22: [ RUN ] SimdMathTest.sqrt 22: [ OK ] SimdMathTest.sqrt (2 ms) 22: [ RUN ] SimdMathTest.sqrtUnsafe 22: [ OK ] SimdMathTest.sqrtUnsafe (1 ms) 22: [ RUN ] SimdMathTest.inv 22: [ OK ] SimdMathTest.inv (1 ms) 22: [ RUN ] SimdMathTest.maskzInv 22: [ OK ] SimdMathTest.maskzInv (0 ms) 22: [ RUN ] SimdMathTest.log 22: [ OK ] SimdMathTest.log (1 ms) 22: [ RUN ] SimdMathTest.exp2 22: [ OK ] SimdMathTest.exp2 (4 ms) 22: [ RUN ] SimdMathTest.exp2Unsafe 22: [ OK ] SimdMathTest.exp2Unsafe (1 ms) 22: [ RUN ] SimdMathTest.exp 22: [ OK ] SimdMathTest.exp (5 ms) 22: [ RUN ] SimdMathTest.expUnsafe 22: [ OK ] SimdMathTest.expUnsafe (1 ms) 22: [ RUN ] SimdMathTest.erf 22: [ OK ] SimdMathTest.erf (2 ms) 22: [ RUN ] SimdMathTest.erfc 22: [ OK ] SimdMathTest.erfc (3 ms) 22: [ RUN ] SimdMathTest.sin 22: [ OK ] SimdMathTest.sin (2 ms) 22: [ RUN ] SimdMathTest.cos 22: [ OK ] SimdMathTest.cos (3 ms) 22: [ RUN ] SimdMathTest.tan 22: [ OK ] SimdMathTest.tan (7 ms) 22: [ RUN ] SimdMathTest.asin 22: [ OK ] SimdMathTest.asin (1 ms) 22: [ RUN ] SimdMathTest.acos 22: [ OK ] SimdMathTest.acos (2 ms) 22: [ RUN ] SimdMathTest.atan 22: [ OK ] SimdMathTest.atan (1 ms) 22: [ RUN ] SimdMathTest.atan2 22: [ OK ] SimdMathTest.atan2 (0 ms) 22: [ RUN ] SimdMathTest.pmeForceCorrection 22: [ OK ] SimdMathTest.pmeForceCorrection (3 ms) 22: [ RUN ] SimdMathTest.pmePotentialCorrection 22: [ OK ] SimdMathTest.pmePotentialCorrection (2 ms) 22: [ RUN ] SimdMathTest.invsqrtSingleAccuracy 22: [ OK ] SimdMathTest.invsqrtSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.invsqrtPairSingleAccuracy 22: [ OK ] SimdMathTest.invsqrtPairSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.sqrtSingleAccuracy 22: [ OK ] SimdMathTest.sqrtSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.sqrtSingleAccuracyUnsafe 22: [ OK ] SimdMathTest.sqrtSingleAccuracyUnsafe (1 ms) 22: [ RUN ] SimdMathTest.invSingleAccuracy 22: [ OK ] SimdMathTest.invSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.logSingleAccuracy 22: [ OK ] SimdMathTest.logSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.exp2SingleAccuracy 22: [ OK ] SimdMathTest.exp2SingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.exp2SingleAccuracyUnsafe 22: [ OK ] SimdMathTest.exp2SingleAccuracyUnsafe (1 ms) 22: [ RUN ] SimdMathTest.expSingleAccuracy 22: [ OK ] SimdMathTest.expSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.expSingleAccuracyUnsafe 22: [ OK ] SimdMathTest.expSingleAccuracyUnsafe (1 ms) 22: [ RUN ] SimdMathTest.erfSingleAccuracy 22: [ OK ] SimdMathTest.erfSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.erfcSingleAccuracy 22: [ OK ] SimdMathTest.erfcSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.sinSingleAccuracy 22: [ OK ] SimdMathTest.sinSingleAccuracy (3 ms) 22: [ RUN ] SimdMathTest.cosSingleAccuracy 22: [ OK ] SimdMathTest.cosSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.tanSingleAccuracy 22: [ OK ] SimdMathTest.tanSingleAccuracy (7 ms) 22: [ RUN ] SimdMathTest.asinSingleAccuracy 22: [ OK ] SimdMathTest.asinSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.acosSingleAccuracy 22: [ OK ] SimdMathTest.acosSingleAccuracy (1 ms) 22: [ RUN ] SimdMathTest.atanSingleAccuracy 22: [ OK ] SimdMathTest.atanSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.atan2SingleAccuracy 22: [ OK ] SimdMathTest.atan2SingleAccuracy (0 ms) 22: [ RUN ] SimdMathTest.pmeForceCorrectionSingleAccuracy 22: [ OK ] SimdMathTest.pmeForceCorrectionSingleAccuracy (2 ms) 22: [ RUN ] SimdMathTest.pmePotentialCorrectionSingleAccuracy 22: [ OK ] SimdMathTest.pmePotentialCorrectionSingleAccuracy (2 ms) 22: [----------] 45 tests from SimdMathTest (83 ms total) 22: 22: [----------] 1 test from EmptyArrayRefTest 22: [ RUN ] EmptyArrayRefTest.IsEmpty 22: [ OK ] EmptyArrayRefTest.IsEmpty (0 ms) 22: [----------] 1 test from EmptyArrayRefTest (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/0.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/0.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/0.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/0.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/0.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/0.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/0 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/1.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/1.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/1.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/1.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/1.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/1.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/1 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/2, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/2.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/2.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/2.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/2.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/2.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/2.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/2 (0 ms total) 22: 22: [----------] 3 tests from ArrayRefTest/3, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefTest/3.ConstructFromPointersWorks 22: [ OK ] ArrayRefTest/3.ConstructFromPointersWorks (0 ms) 22: [ RUN ] ArrayRefTest/3.ConstructFromArrayRefWorks 22: [ OK ] ArrayRefTest/3.ConstructFromArrayRefWorks (0 ms) 22: [ RUN ] ArrayRefTest/3.ConstructFromArrayWorks 22: [ OK ] ArrayRefTest/3.ConstructFromArrayWorks (0 ms) 22: [----------] 3 tests from ArrayRefTest/3 (0 ms total) 22: 22: [----------] 1 test from ArrayRefReadWriteTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefReadWriteTest/0.Assignment 22: [ OK ] ArrayRefReadWriteTest/0.Assignment (0 ms) 22: [----------] 1 test from ArrayRefReadWriteTest/0 (0 ms total) 22: 22: [----------] 1 test from ArrayRefReadWriteTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefReadWriteTest/1.Assignment 22: [ OK ] ArrayRefReadWriteTest/1.Assignment (0 ms) 22: [----------] 1 test from ArrayRefReadWriteTest/1 (0 ms total) 22: 22: [----------] 1 test from ArrayRefArithmeticTest/0, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefArithmeticTest/0.Basic 22: [ OK ] ArrayRefArithmeticTest/0.Basic (0 ms) 22: [----------] 1 test from ArrayRefArithmeticTest/0 (0 ms total) 22: 22: [----------] 1 test from ArrayRefArithmeticTest/1, where TypeParam = gmx::ArrayRef 22: [ RUN ] ArrayRefArithmeticTest/1.Basic 22: [ OK ] ArrayRefArithmeticTest/1.Basic (0 ms) 22: [----------] 1 test from ArrayRefArithmeticTest/1 (0 ms total) 22: 22: [----------] 23 tests from SimdIntegerTest 22: [ RUN ] SimdIntegerTest.setZero 22: [ OK ] SimdIntegerTest.setZero (0 ms) 22: [ RUN ] SimdIntegerTest.set 22: [ OK ] SimdIntegerTest.set (0 ms) 22: [ RUN ] SimdIntegerTest.add 22: [ OK ] SimdIntegerTest.add (0 ms) 22: [ RUN ] SimdIntegerTest.sub 22: [ OK ] SimdIntegerTest.sub (0 ms) 22: [ RUN ] SimdIntegerTest.mul 22: [ OK ] SimdIntegerTest.mul (0 ms) 22: [ RUN ] SimdIntegerTest.and 22: [ OK ] SimdIntegerTest.and (0 ms) 22: [ RUN ] SimdIntegerTest.andNot 22: [ OK ] SimdIntegerTest.andNot (0 ms) 22: [ RUN ] SimdIntegerTest.or 22: [ OK ] SimdIntegerTest.or (0 ms) 22: [ RUN ] SimdIntegerTest.xor 22: [ OK ] SimdIntegerTest.xor (0 ms) 22: [ RUN ] SimdIntegerTest.extract 22: [ OK ] SimdIntegerTest.extract (0 ms) 22: [ RUN ] SimdIntegerTest.cvtR2I 22: [ OK ] SimdIntegerTest.cvtR2I (0 ms) 22: [ RUN ] SimdIntegerTest.cvttR2I 22: [ OK ] SimdIntegerTest.cvttR2I (0 ms) 22: [ RUN ] SimdIntegerTest.cvtI2R 22: [ OK ] SimdIntegerTest.cvtI2R (0 ms) 22: [ RUN ] SimdIntegerTest.cmpEqAndSelectMask 22: [ OK ] SimdIntegerTest.cmpEqAndSelectMask (0 ms) 22: [ RUN ] SimdIntegerTest.cmpEqAndSelectNotMask 22: [ OK ] SimdIntegerTest.cmpEqAndSelectNotMask (0 ms) 22: [ RUN ] SimdIntegerTest.cmpLt 22: [ OK ] SimdIntegerTest.cmpLt (0 ms) 22: [ RUN ] SimdIntegerTest.testBits 22: [ OK ] SimdIntegerTest.testBits (0 ms) 22: [ RUN ] SimdIntegerTest.andB 22: [ OK ] SimdIntegerTest.andB (0 ms) 22: [ RUN ] SimdIntegerTest.orB 22: [ OK ] SimdIntegerTest.orB (0 ms) 22: [ RUN ] SimdIntegerTest.anyTrue 22: [ OK ] SimdIntegerTest.anyTrue (0 ms) 22: [ RUN ] SimdIntegerTest.blend 22: [ OK ] SimdIntegerTest.blend (0 ms) 22: [ RUN ] SimdIntegerTest.cvtB2IB 22: [ OK ] SimdIntegerTest.cvtB2IB (0 ms) 22: [ RUN ] SimdIntegerTest.cvtIB2B 22: [ OK ] SimdIntegerTest.cvtIB2B (0 ms) 22: [----------] 23 tests from SimdIntegerTest (0 ms total) 22: 22: [----------] 41 tests from SimdScalarTest 22: [ RUN ] SimdScalarTest.load 22: [ OK ] SimdScalarTest.load (0 ms) 22: [ RUN ] SimdScalarTest.loadU 22: [ OK ] SimdScalarTest.loadU (0 ms) 22: [ RUN ] SimdScalarTest.store 22: [ OK ] SimdScalarTest.store (0 ms) 22: [ RUN ] SimdScalarTest.storeU 22: [ OK ] SimdScalarTest.storeU (0 ms) 22: [ RUN ] SimdScalarTest.setZero 22: [ OK ] SimdScalarTest.setZero (0 ms) 22: [ RUN ] SimdScalarTest.andNot 22: [ OK ] SimdScalarTest.andNot (0 ms) 22: [ RUN ] SimdScalarTest.fma 22: [ OK ] SimdScalarTest.fma (1 ms) 22: [ RUN ] SimdScalarTest.fms 22: [ OK ] SimdScalarTest.fms (0 ms) 22: [ RUN ] SimdScalarTest.fnma 22: [ OK ] SimdScalarTest.fnma (0 ms) 22: [ RUN ] SimdScalarTest.fnms 22: [ OK ] SimdScalarTest.fnms (0 ms) 22: [ RUN ] SimdScalarTest.maskAdd 22: [ OK ] SimdScalarTest.maskAdd (0 ms) 22: [ RUN ] SimdScalarTest.maskzMul 22: [ OK ] SimdScalarTest.maskzMul (0 ms) 22: [ RUN ] SimdScalarTest.maskzFma 22: [ OK ] SimdScalarTest.maskzFma (0 ms) 22: [ RUN ] SimdScalarTest.abs 22: [ OK ] SimdScalarTest.abs (0 ms) 22: [ RUN ] SimdScalarTest.max 22: [ OK ] SimdScalarTest.max (0 ms) 22: [ RUN ] SimdScalarTest.min 22: [ OK ] SimdScalarTest.min (0 ms) 22: [ RUN ] SimdScalarTest.round 22: [ OK ] SimdScalarTest.round (0 ms) 22: [ RUN ] SimdScalarTest.trunc 22: [ OK ] SimdScalarTest.trunc (0 ms) 22: [ RUN ] SimdScalarTest.reduce 22: [ OK ] SimdScalarTest.reduce (0 ms) 22: [ RUN ] SimdScalarTest.testBits 22: [ OK ] SimdScalarTest.testBits (0 ms) 22: [ RUN ] SimdScalarTest.anyTrue 22: [ OK ] SimdScalarTest.anyTrue (0 ms) 22: [ RUN ] SimdScalarTest.selectByMask 22: [ OK ] SimdScalarTest.selectByMask (0 ms) 22: [ RUN ] SimdScalarTest.selectByNotMask 22: [ OK ] SimdScalarTest.selectByNotMask (0 ms) 22: [ RUN ] SimdScalarTest.blend 22: [ OK ] SimdScalarTest.blend (0 ms) 22: [ RUN ] SimdScalarTest.cvtR2I 22: [ OK ] SimdScalarTest.cvtR2I (0 ms) 22: [ RUN ] SimdScalarTest.cvttR2I 22: [ OK ] SimdScalarTest.cvttR2I (0 ms) 22: [ RUN ] SimdScalarTest.cvtI2R 22: [ OK ] SimdScalarTest.cvtI2R (0 ms) 22: [ RUN ] SimdScalarTest.cvtF2D 22: [ OK ] SimdScalarTest.cvtF2D (0 ms) 22: [ RUN ] SimdScalarTest.cvtD2D 22: [ OK ] SimdScalarTest.cvtD2D (0 ms) 22: [ RUN ] SimdScalarTest.loadI 22: [ OK ] SimdScalarTest.loadI (0 ms) 22: [ RUN ] SimdScalarTest.loadUI 22: [ OK ] SimdScalarTest.loadUI (0 ms) 22: [ RUN ] SimdScalarTest.storeI 22: [ OK ] SimdScalarTest.storeI (0 ms) 22: [ RUN ] SimdScalarTest.storeUI 22: [ OK ] SimdScalarTest.storeUI (0 ms) 22: [ RUN ] SimdScalarTest.andNotI 22: [ OK ] SimdScalarTest.andNotI (0 ms) 22: [ RUN ] SimdScalarTest.testBitsI 22: [ OK ] SimdScalarTest.testBitsI (0 ms) 22: [ RUN ] SimdScalarTest.selectByMaskI 22: [ OK ] SimdScalarTest.selectByMaskI (0 ms) 22: [ RUN ] SimdScalarTest.selectByNotMaskI 22: [ OK ] SimdScalarTest.selectByNotMaskI (0 ms) 22: [ RUN ] SimdScalarTest.blendI 22: [ OK ] SimdScalarTest.blendI (0 ms) 22: [ RUN ] SimdScalarTest.cvtB2IB 22: [ OK ] SimdScalarTest.cvtB2IB (0 ms) 22: [ RUN ] SimdScalarTest.cvtIB2B 22: [ OK ] SimdScalarTest.cvtIB2B (0 ms) 22: [ RUN ] SimdScalarTest.expandScalarsToTriplets 22: [ OK ] SimdScalarTest.expandScalarsToTriplets (0 ms) 22: [----------] 41 tests from SimdScalarTest (1 ms total) 22: 22: [----------] 8 tests from SimdScalarUtilTest 22: [ RUN ] SimdScalarUtilTest.gatherLoadTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadUTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadUTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterStoreU 22: [ OK ] SimdScalarUtilTest.transposeScatterStoreU (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterIncrU 22: [ OK ] SimdScalarUtilTest.transposeScatterIncrU (0 ms) 22: [ RUN ] SimdScalarUtilTest.transposeScatterDecrU 22: [ OK ] SimdScalarUtilTest.transposeScatterDecrU (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadBySimdIntTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose 22: [ OK ] SimdScalarUtilTest.gatherLoadUBySimdIntTranspose (0 ms) 22: [ RUN ] SimdScalarUtilTest.reduceIncr4ReturnSum 22: [ OK ] SimdScalarUtilTest.reduceIncr4ReturnSum (0 ms) 22: [----------] 8 tests from SimdScalarUtilTest (0 ms total) 22: 22: [----------] 37 tests from SimdScalarMathTest 22: [ RUN ] SimdScalarMathTest.copysign 22: [ OK ] SimdScalarMathTest.copysign (0 ms) 22: [ RUN ] SimdScalarMathTest.invsqrtPair 22: [ OK ] SimdScalarMathTest.invsqrtPair (0 ms) 22: [ RUN ] SimdScalarMathTest.inv 22: [ OK ] SimdScalarMathTest.inv (0 ms) 22: [ RUN ] SimdScalarMathTest.maskzInvsqrt 22: [ OK ] SimdScalarMathTest.maskzInvsqrt (0 ms) 22: [ RUN ] SimdScalarMathTest.log 22: [ OK ] SimdScalarMathTest.log (0 ms) 22: [ RUN ] SimdScalarMathTest.exp2 22: [ OK ] SimdScalarMathTest.exp2 (0 ms) 22: [ RUN ] SimdScalarMathTest.exp 22: [ OK ] SimdScalarMathTest.exp (0 ms) 22: [ RUN ] SimdScalarMathTest.erf 22: [ OK ] SimdScalarMathTest.erf (0 ms) 22: [ RUN ] SimdScalarMathTest.erfc 22: [ OK ] SimdScalarMathTest.erfc (0 ms) 22: [ RUN ] SimdScalarMathTest.sincos 22: [ OK ] SimdScalarMathTest.sincos (0 ms) 22: [ RUN ] SimdScalarMathTest.sin 22: [ OK ] SimdScalarMathTest.sin (0 ms) 22: [ RUN ] SimdScalarMathTest.cos 22: [ OK ] SimdScalarMathTest.cos (0 ms) 22: [ RUN ] SimdScalarMathTest.tan 22: [ OK ] SimdScalarMathTest.tan (0 ms) 22: [ RUN ] SimdScalarMathTest.asin 22: [ OK ] SimdScalarMathTest.asin (0 ms) 22: [ RUN ] SimdScalarMathTest.acos 22: [ OK ] SimdScalarMathTest.acos (0 ms) 22: [ RUN ] SimdScalarMathTest.atan 22: [ OK ] SimdScalarMathTest.atan (0 ms) 22: [ RUN ] SimdScalarMathTest.atan2 22: [ OK ] SimdScalarMathTest.atan2 (0 ms) 22: [ RUN ] SimdScalarMathTest.pmeForceCorrection 22: [ OK ] SimdScalarMathTest.pmeForceCorrection (0 ms) 22: [ RUN ] SimdScalarMathTest.pmePotentialCorrection 22: [ OK ] SimdScalarMathTest.pmePotentialCorrection (0 ms) 22: [ RUN ] SimdScalarMathTest.invsqrtPairSingleAccuracy 22: [ OK ] SimdScalarMathTest.invsqrtPairSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.invSingleAccuracy 22: [ OK ] SimdScalarMathTest.invSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy 22: [ OK ] SimdScalarMathTest.maskzInvsqrtSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.logSingleAccuracy 22: [ OK ] SimdScalarMathTest.logSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.exp2SingleAccuracy 22: [ OK ] SimdScalarMathTest.exp2SingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.expSingleAccuracy 22: [ OK ] SimdScalarMathTest.expSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.erfSingleAccuracy 22: [ OK ] SimdScalarMathTest.erfSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.erfcSingleAccuracy 22: [ OK ] SimdScalarMathTest.erfcSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.sincosSingleAccuracy 22: [ OK ] SimdScalarMathTest.sincosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.sinSingleAccuracy 22: [ OK ] SimdScalarMathTest.sinSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.cosSingleAccuracy 22: [ OK ] SimdScalarMathTest.cosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.tanSingleAccuracy 22: [ OK ] SimdScalarMathTest.tanSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.asinSingleAccuracy 22: [ OK ] SimdScalarMathTest.asinSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.acosSingleAccuracy 22: [ OK ] SimdScalarMathTest.acosSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.atanSingleAccuracy 22: [ OK ] SimdScalarMathTest.atanSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.atan2SingleAccuracy 22: [ OK ] SimdScalarMathTest.atan2SingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy 22: [ OK ] SimdScalarMathTest.pmeForceCorrectionSingleAccuracy (0 ms) 22: [ RUN ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy 22: [ OK ] SimdScalarMathTest.pmePotentialCorrectionSingleAccuracy (0 ms) 22: [----------] 37 tests from SimdScalarMathTest (1 ms total) 22: 22: [----------] Global test environment tear-down 22: [==========] 236 tests from 19 test cases ran. (87 ms total) 22: [ PASSED ] 236 tests. 22/23 Test #22: SimdUnitTests .................... Passed 0.24 sec test 23 Start 23: CompatibilityHelpersTests 23: Test command: /<>/build/openmpi-dp/bin/compat-test "--gtest_output=xml:/<>/build/openmpi-dp/Testing/Temporary/CompatibilityHelpersTests.xml" 23: Test timeout computed to be: 30 23: Note: Google Test filter = -*ChangingPinningPolicyRequiresCuda 23: [==========] Running 1 test from 1 test case. 23: [----------] Global test environment set-up. 23: [----------] 1 test from CompatibilityHelper 23: [ RUN ] CompatibilityHelper.MakeUniqueCompiles 23: [ OK ] CompatibilityHelper.MakeUniqueCompiles (0 ms) 23: [----------] 1 test from CompatibilityHelper (0 ms total) 23: 23: [----------] Global test environment tear-down 23: [==========] 1 test from 1 test case ran. (0 ms total) 23: [ PASSED ] 1 test. 23/23 Test #23: CompatibilityHelpersTests ........ Passed 0.17 sec The following tests passed: TestUtilsUnitTests TestUtilsMpiUnitTests MdlibUnitTest AppliedForcesUnitTest ListedForcesTest CommandLineUnitTests EwaldUnitTests FFTUnitTests GpuUtilsUnitTests HardwareUnitTests MathUnitTests MdrunUtilityUnitTests OnlineHelpUnitTests OptionsUnitTests RandomUnitTests TableUnitTests TaskAssignmentUnitTests UtilityUnitTests FileIOTests PullTest AwhTest SimdUnitTests CompatibilityHelpersTests 100% tests passed, 0 tests failed out of 23 Label Time Summary: GTest = 5.30 sec*proc (23 tests) MpiTest = 0.18 sec*proc (1 test) UnitTest = 5.30 sec*proc (23 tests) Total Test time (real) = 5.69 sec touch build-openmpi dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j4 -C build/basic install DESTDIR=/<>/debian/gromacs make[1]: Entering directory '/<>/build/basic' /usr/bin/cmake -H/<> -B/<>/build/basic --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles /<>/build/basic/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic /<>/build/basic/src/programs/mdrun/tests /<>/build/basic/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic' make[3]: Leaving directory '/<>/build/basic' make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Entering directory '/<>/build/basic' make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic' make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic' [ 1%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 2%] Built target mdrun_test_objlib [ 2%] Built target view_objlib [ 2%] Built target mdrun_objlib make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic /<>/build/basic/src/gromacs /<>/build/basic/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/basic' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic /<>/build/basic/share/template /<>/build/basic/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic' cd /<>/build/basic && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic /<>/build/basic/src/programs /<>/build/basic/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/<>/build/basic' make[3]: Leaving directory '/<>/build/basic' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build make[3]: Entering directory '/<>/build/basic' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/<>/build/basic' [ 98%] Built target template [100%] Built target gmx make[2]: Leaving directory '/<>/build/basic' /usr/bin/cmake -E cmake_progress_start /<>/build/basic/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/basic' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/basic' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/gromacs/usr/share/man/man1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-sham.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dos.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-filter.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dyndom.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-bundle.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-do_dssp.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-genconf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-current.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-convert-tpr.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rotmat.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-x2top.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-covar.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rms.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-order.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-chi.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-confrms.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-check.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-sans.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-msd.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-mindist.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-gangle.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rama.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-potential.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-cluster.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-polystat.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-mdrun.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-make_ndx.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-spol.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-sasa.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-saxs.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-distance.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-disre.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-energy.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rmsf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-anadock.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-freevolume.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-densmap.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-editconf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-angle.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-nmens.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-spatial.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-densorder.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-enemat.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-density.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-help.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-helix.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-morph.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-genion.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-solvate.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-select.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-sorient.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-traj.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-principal.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-nmr.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-view.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-rdf.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-h2order.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-hbond.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-velacc.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-lie.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-analyze.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-dump.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-tune_pme.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-grompp.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-wheel.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-wham.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-bar.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 -- Installing: /<>/debian/gromacs/usr/share/man/man1/gmx-awh.1 -- Installing: /<>/debian/gromacs/usr/share/gromacs/README.tutor -- Installing: /<>/debian/gromacs/usr/share/gromacs/README_FreeEnergyModifications.txt -- Installing: /<>/debian/gromacs/usr/share/gromacs/top -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ca-shift.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/table6-8.xvg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/export.dlg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ps.m2p -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/residues.dtd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/sfactor.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/table6-9.xvg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/atommass.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/table6-12.xvg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/co-shift.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffG45a3.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/edissoc.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/spc216.gro -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/bonds.dlg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/electroneg.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ss.map -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/flexspce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/nsfactor.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/phbres.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffG53a5.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/surface.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/flexwat-ferguson.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/README -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/vdwradii.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/ha-shift.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/defselection.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/xlateat.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/refi_aa.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/dgsolv.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/table6-11.xvg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/flexspc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/residues.xml -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/elements.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/specbond.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/gb.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/vdw-msms.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/sw.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/residuetypes.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/tip5p.gro -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/table6-10.xvg -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/random.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/tip4p.gro -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/gbsa.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/atom_nom.tbl -- Installing: /<>/debian/gromacs/usr/share/gromacs/top/cb-shift.dat -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/CMakeLists.txt -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/README -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/template.cpp -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/Makefile.pkg -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /<>/debian/gromacs/usr/bin/GMXRC -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /<>/debian/gromacs/usr/bin/demux.pl -- Installing: /<>/debian/gromacs/usr/bin/xplor2gmx.pl -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/commandline.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/version.h -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/libgromacs.so.3.3.0 -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/libgromacs.so.3 -- Installing: 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/<>/debian/gromacs/usr/include/gromacs/commandline/cmdlineprogramcontext.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/commandline/filenm.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/commandline/pargs.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/commandline/viewit.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fft/fft.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/gpu_utils/hostallocator.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/eigensolver.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/matrix.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/sparsematrix.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/3dtransforms.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/do_fit.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/functions.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/gmxcomplex.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/units.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/utilities.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/vec.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/vectypes.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/math/paddedvector.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/mdtypes/inputrec.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/mdtypes/mdatom.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/mdtypes/md_enums.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/mdtypes/state.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/abstractoption.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/abstractsection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/basicoptions.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/filenameoption.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/filenameoptionmanager.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/ioptionsbehavior.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/ioptionscontainer.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/isectionstorage.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/ivaluestore.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/optionfiletype.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/optionflags.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/options.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/optionsection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/repeatingsection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/timeunitmanager.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/options/valuestore.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/pbcutil/ishift.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/pbcutil/pbc.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/pbcutil/rmpbc.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/exponentialdistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/gammadistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/normaldistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/seed.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/tabulatednormaldistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/threefry.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/uniformintdistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/random/uniformrealdistribution.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/timing/wallcycle.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/timing/walltime_accounting.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/atomprop.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/atoms.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/block.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/idef.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/index.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/mtop_util.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/symtab.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/topology/topology.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectory/energy.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectory/trajectoryframe.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/alignedallocator.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/allocator.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/arrayref.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/arraysize.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/basedefinitions.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/baseversion.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/classhelpers.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/cstringutil.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/current_function.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/datafilefinder.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/errorcodes.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/exceptions.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/fatalerror.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/flags.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/futil.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/gmxassert.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/init.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/programcontext.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/real.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/smalloc.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/utility/stringutil.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/confio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/enxio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/filetypes.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/gmxfio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/matio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/mtxio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/oenv.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/pdbio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/rgb.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/tpxio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/trrio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/trxio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/xdr_datatype.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/xtcio.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/fileio/xvgr.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/gmxana/gstat.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/abstractdata.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/analysisdata.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/arraydata.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/dataframe.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/datamodule.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/average.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/displacement.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/histogram.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/lifetime.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/plot.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/nbsearch.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/indexutil.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/position.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selectioncollection.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selectionenums.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoption.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoptionbehavior.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoptionmanager.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /<>/debian/gromacs/usr/bin/gmx -- Up-to-date: /<>/debian/gromacs/usr/bin -- Installing: /<>/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /<>/debian/gromacs/usr/bin/gmx-completion-gmx.bash make[1]: Leaving directory '/<>/build/basic' /usr/bin/make -j4 -C build/basic-dp install DESTDIR=/<>/debian/gromacs make[1]: Entering directory '/<>/build/basic-dp' /usr/bin/cmake -H/<> -B/<>/build/basic-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles /<>/build/basic-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/view_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs/mdrun/tests /<>/build/basic-dp /<>/build/basic-dp/src/programs/mdrun/tests /<>/build/basic-dp/src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build.make src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/programs/mdrun/tests/CMakeFiles/mdrun_test_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/view_objlib.dir/build.make src/programs/CMakeFiles/view_objlib.dir/build make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/view_objlib.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' [ 0%] Built target mdrun_test_objlib [ 1%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 1%] Built target mdrun_objlib [ 2%] Built target view_objlib make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/basic-dp /<>/build/basic-dp/src/gromacs /<>/build/basic-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' [ 98%] Built target libgromacs /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/depend /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/depend make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/share/template /<>/build/basic-dp /<>/build/basic-dp/share/template /<>/build/basic-dp/share/template/CMakeFiles/template.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/basic-dp' cd /<>/build/basic-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/basic-dp /<>/build/basic-dp/src/programs /<>/build/basic-dp/src/programs/CMakeFiles/gmx.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Leaving directory '/<>/build/basic-dp' /usr/bin/make -f src/programs/CMakeFiles/gmx.dir/build.make src/programs/CMakeFiles/gmx.dir/build /usr/bin/make -f share/template/CMakeFiles/template.dir/build.make share/template/CMakeFiles/template.dir/build make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'share/template/CMakeFiles/template.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' make[3]: Entering directory '/<>/build/basic-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/gmx.dir/build'. make[3]: Leaving directory '/<>/build/basic-dp' [100%] Built target template [100%] Built target gmx make[2]: Leaving directory '/<>/build/basic-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/basic-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/basic-dp' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/basic-dp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-sham.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dos.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-filter.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dyndom.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-bundle.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-do_dssp.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-mk_angndx.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-genconf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-current.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-clustsize.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-convert-tpr.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dielectric.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rotmat.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-x2top.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-insert-molecules.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-covar.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rms.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-order.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rmsdist.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-eneconv.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-nmtraj.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-pairdist.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dipoles.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-chi.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-confrms.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-check.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-trjconv.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-sans.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-msd.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-mindist.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-gangle.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-gyrate.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rama.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-potential.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-cluster.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-polystat.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-trjcat.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-mdrun.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-make_ndx.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-anaeig.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-spol.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-sasa.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-saxs.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-distance.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-disre.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-energy.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rmsf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-mdmat.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-nmeig.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-anadock.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-freevolume.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-densmap.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-editconf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-genrestr.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dyecoupl.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-angle.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-nmens.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-spatial.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-densorder.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-enemat.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-density.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rotacf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-help.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-helix.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-morph.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-pme_error.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-saltbr.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-genion.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-solvate.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-hydorder.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-select.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-sorient.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-vanhove.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-pdb2gmx.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-helixorient.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-trajectory.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-traj.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-principal.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-nmr.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-view.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-tcaf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-rdf.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-h2order.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-hbond.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-velacc.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-lie.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-analyze.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-dump.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-tune_pme.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-xpm2ps.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-grompp.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-make_edi.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-wheel.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-wham.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-trjorder.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-bar.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-sigeps.1 -- Up-to-date: /<>/debian/gromacs/usr/share/man/man1/gmx-awh.1 -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/README.tutor -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/README_FreeEnergyModifications.txt -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ca-shift.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/table6-8.xvg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffG43a1.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/export.dlg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ps.m2p -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/residues.dtd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber03.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/sfactor.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber96.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/table6-9.xvg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffoplsaa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amberGS.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffoplsaa-n.tst -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/atommass.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/table6-12.xvg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/co-shift.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffG45a3.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/edissoc.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/spc216.gro -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/bonds.dlg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/electroneg.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos45a3.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ss.map -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/flexspce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/popc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/dppc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/tmcl.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos54a7.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/nsfactor.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber94.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/phbres.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffG53a5.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/surface.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/methanol216.gro -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a1.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/flexwat-ferguson.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/README -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/vdwradii.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos43a2.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffG53a6.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ffG43a2.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/ha-shift.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/defselection.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/xlateat.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/refi_aa.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/dgsolv.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/table6-11.xvg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a5.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/flexspc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/residues.xml -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/elements.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/specbond.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/gromos53a6.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tips3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnabonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/dna.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/cmap.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/gb.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/lipids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/charmm27.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/vdw-msms.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/sw.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/urea.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/dna.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/amber99sb.ff/rna.arn -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/residuetypes.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/tip5p.gro -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/table6-10.xvg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/random.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/tip4p.gro -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4pew.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spce.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/gbsa.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/watermodels.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip4p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ions.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/1propanol.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomtypes.atp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.doc -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/methanol.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip5pe.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/tip3p.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ffbonded.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/spc.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/forcefield.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/oplsaa.ff/ethanol.itp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/atom_nom.tbl -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/top/cb-shift.dat -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/template/CMakeLists.txt -- Installing: /<>/debian/gromacs/usr/share/gromacs/template/README -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/template/template.cpp -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/template/Makefile.pkg -- Up-to-date: /<>/debian/gromacs/usr/share/gromacs/template/cmake/FindGROMACS.cmake -- Installing: /<>/debian/gromacs/usr/bin/GMXRC -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /<>/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /<>/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /<>/debian/gromacs/usr/bin/xplor2gmx.pl -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility.h -- Installing: /<>/debian/gromacs/usr/include/gromacs/version.h -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/libgromacs_d.so.3.3.0 -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/libgromacs_d.so.3 -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/libgromacs_d.so -- Installing: /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/pkgconfig/libgromacs_d.pc -- Installing: /<>/debian/gromacs/usr/share/cmake/gromacs_d/libgromacs.cmake -- Installing: /<>/debian/gromacs/usr/share/cmake/gromacs_d/libgromacs-release.cmake -- Installing: /<>/debian/gromacs/usr/share/cmake/gromacs_d/gromacs_d-config.cmake -- Installing: /<>/debian/gromacs/usr/share/cmake/gromacs_d/gromacs_d-config-version.cmake -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/listed-forces/listed-forces.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlinehelpwriter.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlineinit.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlinemodule.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlineoptionsmodule.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlineparser.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/cmdlineprogramcontext.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/filenm.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/pargs.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/commandline/viewit.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fft/fft.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/gpu_utils/hostallocator.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/eigensolver.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/matrix.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/linearalgebra/sparsematrix.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/3dtransforms.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/do_fit.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/functions.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/gmxcomplex.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/units.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/utilities.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/vec.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/vectypes.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/math/paddedvector.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/mdtypes/inputrec.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/mdtypes/mdatom.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/mdtypes/md_enums.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/mdtypes/state.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/abstractoption.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/abstractsection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/basicoptions.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/filenameoption.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/filenameoptionmanager.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/ioptionsbehavior.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/ioptionscontainer.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/ioptionscontainerwithsections.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/isectionstorage.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/ivaluestore.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/optionfiletype.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/optionflags.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/options.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/optionsection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/repeatingsection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/timeunitmanager.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/options/valuestore.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/pbcutil/ishift.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/pbcutil/pbc.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/pbcutil/rmpbc.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/exponentialdistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/gammadistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/normaldistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/seed.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/tabulatednormaldistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/threefry.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/uniformintdistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/random/uniformrealdistribution.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/timing/wallcycle.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/timing/walltime_accounting.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/atomprop.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/atoms.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/block.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/idef.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/index.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/mtop_util.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/symtab.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/topology/topology.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectory/energy.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectory/trajectoryframe.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/alignedallocator.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/allocator.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/arrayref.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/arraysize.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/basedefinitions.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/baseversion.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/classhelpers.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/cstringutil.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/current_function.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/datafilefinder.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/errorcodes.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/exceptions.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/fatalerror.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/flags.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/futil.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/gmxassert.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/init.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/programcontext.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/real.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/smalloc.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/utility/stringutil.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/confio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/enxio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/filetypes.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/gmxfio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/matio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/mtxio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/oenv.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/pdbio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/rgb.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/tpxio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/trrio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/trxio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/xdr_datatype.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/xtcio.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/fileio/xvgr.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/gmxana/gstat.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/abstractdata.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/analysisdata.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/arraydata.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/dataframe.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/datamodule.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/average.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/displacement.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/histogram.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/lifetime.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/analysisdata/modules/plot.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/nbsearch.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/indexutil.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/position.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selectioncollection.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selectionenums.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoption.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoptionbehavior.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/selection/selectionoptionmanager.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/analysismodule.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/analysissettings.h -- Up-to-date: /<>/debian/gromacs/usr/include/gromacs/trajectoryanalysis/cmdlinerunner.h -- Installing: /<>/debian/gromacs/usr/bin/gmx_d -- Up-to-date: /<>/debian/gromacs/usr/bin -- Up-to-date: /<>/debian/gromacs/usr/bin/gmx-completion.bash -- Installing: /<>/debian/gromacs/usr/bin/gmx-completion-gmx_d.bash make[1]: Leaving directory '/<>/build/basic-dp' dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # gmx(1) -> gmx_d(1) dh_link -pgromacs dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j4 -C build/mpich install DESTDIR=/<>/debian/gromacs-mpich make[1]: Entering directory '/<>/build/mpich' /usr/bin/cmake -H/<> -B/<>/build/mpich --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles /<>/build/mpich/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich /<>/build/mpich/src/programs /<>/build/mpich/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/mpich' make[3]: Entering directory '/<>/build/mpich' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/mpich' [ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 5%] Built target mdrun_objlib make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich /<>/build/mpich/src/gromacs /<>/build/mpich/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/mpich' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/mpich' cd /<>/build/mpich && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich /<>/build/mpich/src/programs /<>/build/mpich/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/mpich' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/<>/build/mpich' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/mpich' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/mpich' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/mpich' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich -- Installing: /<>/debian/gromacs-mpich/usr/bin/gmx-completion-mdrun_mpi.mpich.bash make[1]: Leaving directory '/<>/build/mpich' /usr/bin/make -j4 -C build/mpich-dp install DESTDIR=/<>/debian/gromacs-mpich make[1]: Entering directory '/<>/build/mpich-dp' /usr/bin/cmake -H/<> -B/<>/build/mpich-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles /<>/build/mpich-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich-dp /<>/build/mpich-dp/src/programs /<>/build/mpich-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/mpich-dp' make[3]: Entering directory '/<>/build/mpich-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/mpich-dp' [ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 5%] Built target mdrun_objlib make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/mpich-dp /<>/build/mpich-dp/src/gromacs /<>/build/mpich-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/mpich-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/mpich-dp' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/mpich-dp' cd /<>/build/mpich-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/mpich-dp /<>/build/mpich-dp/src/programs /<>/build/mpich-dp/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/mpich-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/mpich-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/<>/build/mpich-dp' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/mpich-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/mpich-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/mpich-dp' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/mpich-dp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich -- Installing: /<>/debian/gromacs-mpich/usr/bin/gmx-completion-mdrun_mpi_d.mpich.bash make[1]: Leaving directory '/<>/build/mpich-dp' chmod 644 /<>/debian/gromacs-mpich/usr/bin/gmx-completion* mv /<>/debian/gromacs-mpich/usr/bin/gmx-completion* /<>/debian/gromacs-mpich/usr/share/gromacs/shell-specific/ dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j4 -C build/openmpi install DESTDIR=/<>/debian/gromacs-openmpi make[1]: Entering directory '/<>/build/openmpi' /usr/bin/cmake -H/<> -B/<>/build/openmpi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles /<>/build/openmpi/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi /<>/build/openmpi/src/programs /<>/build/openmpi/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/openmpi' make[3]: Entering directory '/<>/build/openmpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/openmpi' [ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 5%] Built target mdrun_objlib make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi /<>/build/openmpi/src/gromacs /<>/build/openmpi/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/openmpi' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/openmpi' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/openmpi' cd /<>/build/openmpi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi /<>/build/openmpi/src/programs /<>/build/openmpi/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/openmpi' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/<>/build/openmpi' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/openmpi' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/openmpi' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/openmpi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi -- Installing: /<>/debian/gromacs-openmpi/usr/bin/gmx-completion-mdrun_mpi.openmpi.bash make[1]: Leaving directory '/<>/build/openmpi' /usr/bin/make -j4 -C build/openmpi-dp install DESTDIR=/<>/debian/gromacs-openmpi make[1]: Entering directory '/<>/build/openmpi-dp' /usr/bin/cmake -H/<> -B/<>/build/openmpi-dp --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles /<>/build/openmpi-dp/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/depend /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/depend make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/tng_io_obj.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/programs /<>/build/openmpi-dp/src/programs/CMakeFiles/mdrun_objlib.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/tng_io_obj.dir/build.make src/gromacs/CMakeFiles/tng_io_obj.dir/build make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun_objlib.dir/build.make src/programs/CMakeFiles/mdrun_objlib.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/tng_io_obj.dir/build'. make[3]: Leaving directory '/<>/build/openmpi-dp' make[3]: Entering directory '/<>/build/openmpi-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun_objlib.dir/build'. make[3]: Leaving directory '/<>/build/openmpi-dp' [ 3%] Built target tng_io_obj /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/depend [ 5%] Built target mdrun_objlib make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/gromacs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/gromacs /<>/build/openmpi-dp/src/gromacs/CMakeFiles/libgromacs.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/gromacs/CMakeFiles/libgromacs.dir/build.make src/gromacs/CMakeFiles/libgromacs.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' make[3]: Nothing to be done for 'src/gromacs/CMakeFiles/libgromacs.dir/build'. make[3]: Leaving directory '/<>/build/openmpi-dp' [100%] Built target libgromacs /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/depend make[3]: Entering directory '/<>/build/openmpi-dp' cd /<>/build/openmpi-dp && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/programs /<>/build/openmpi-dp /<>/build/openmpi-dp/src/programs /<>/build/openmpi-dp/src/programs/CMakeFiles/mdrun.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/make -f src/programs/CMakeFiles/mdrun.dir/build.make src/programs/CMakeFiles/mdrun.dir/build make[3]: Entering directory '/<>/build/openmpi-dp' make[3]: Nothing to be done for 'src/programs/CMakeFiles/mdrun.dir/build'. make[3]: Leaving directory '/<>/build/openmpi-dp' [100%] Built target mdrun make[2]: Leaving directory '/<>/build/openmpi-dp' /usr/bin/cmake -E cmake_progress_start /<>/build/openmpi-dp/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/build/openmpi-dp' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/build/openmpi-dp' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi -- Installing: /<>/debian/gromacs-openmpi/usr/bin/gmx-completion-mdrun_mpi_d.openmpi.bash make[1]: Leaving directory '/<>/build/openmpi-dp' chmod 644 /<>/debian/gromacs-openmpi/usr/bin/gmx-completion* mv /<>/debian/gromacs-openmpi/usr/bin/gmx-completion* /<>/debian/gromacs-openmpi/usr/share/gromacs/shell-specific/ # Force-disable RUNPATH - see # and lintian tag binary-or-shlib-defines-rpath in versions >= 2.5.50 chrpath -d /<>/debian/gromacs-openmpi/usr/bin/mdrun_mpi* dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -plibgromacs-dev dh_installdirs -pgromacs-data mv /<>/debian/gromacs/usr/share/gromacs/top \ /<>/debian/gromacs-data/usr/share/gromacs mv /<>/debian/gromacs/usr/share/man \ /<>/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /<>/debian/gromacs/usr/bin/GMXRC* \ /<>/debian/gromacs/usr/bin/gmx-completion* \ /<>/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /<>/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/libgromacs-dev/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/libgromacs3/html # this name is also given in documentation dh_link -pgromacs-data usr/share/doc/gromacs-data/copyright usr/share/doc/gromacs-data/COPYING # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /<>/debian/gromacs/usr/bin/demux.pl /<>/debian/gromacs/usr/bin/demux mv /<>/debian/gromacs/usr/bin/xplor2gmx.pl /<>/debian/gromacs/usr/bin/xplor2gmx mkdir -p /<>/debian/libgromacs3/usr/lib/aarch64-linux-gnu mv /<>/debian/gromacs/usr/lib/*/*.so.* /<>/debian/libgromacs3/usr/lib/aarch64-linux-gnu/ dh_installdirs -plibgromacs-dev mv /<>/debian/gromacs/usr/include /<>/debian/libgromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mkdir -p /<>/debian/libgromacs-dev/usr/lib/aarch64-linux-gnu mv /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/*.so \ /<>/debian/gromacs/usr/lib/aarch64-linux-gnu/pkgconfig \ /<>/debian/libgromacs-dev/usr/lib/aarch64-linux-gnu/ rmdir /<>/debian/gromacs/usr/lib/aarch64-linux-gnu /<>/debian/gromacs/usr/lib mv /<>/debian/gromacs/usr/share/gromacs/template /<>/debian/libgromacs-dev/usr/share/gromacs/template # remaining documentation catch-all mv /<>/debian/gromacs/usr/share/gromacs/* /<>/debian/gromacs-data/usr/share/doc/gromacs rmdir /<>/debian/gromacs/usr/share/gromacs # what are you doing here? mv /<>/debian/gromacs/usr/share/cmake /<>/debian/libgromacs-dev/usr/share/gromacs/ dh_lintian -pgromacs -pgromacs-data -plibgromacs3 dh_testdir -a dh_testroot -a dh_installchangelogs -a dh_installdocs -a dh_strip -A dh_compress -a dh_fixperms -a dh_makeshlibs -a dh_shlibdeps -plibgromacs3 -L libgromacs3 -l debian/libgromacs3/usr/lib dh_shlibdeps -pgromacs -L libgromacs3 -l debian/libgromacs3/usr/lib:debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libgromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 INFO: pkgstriptranslations version 141 pkgstriptranslations: processing gromacs (in debian/gromacs); do_strip: , oemstrip: pkgstriptranslations: processing gromacs-mpich-dbgsym (in debian/.debhelper/gromacs-mpich/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libgromacs3-dbgsym (in debian/.debhelper/libgromacs3/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/gromacs-mpich/dbgsym-root/DEBIAN/control, package gromacs-mpich-dbgsym, directory debian/.debhelper/gromacs-mpich/dbgsym-root dpkg-deb: building package 'gromacs-mpich-dbgsym' in 'debian/.debhelper/scratch-space/build-gromacs-mpich/gromacs-mpich-dbgsym_2018.3-1ubuntu1_arm64.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs Skipping gromacs-data because it is not to be built Searching for duplicated docs in dependency libgromacs3... symlinking changelog.Debian.gz in gromacs to file in libgromacs3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package gromacs ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gromacs' in '../gromacs_2018.3-1ubuntu1_arm64.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing gromacs-dbgsym (in debian/.debhelper/gromacs/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/gromacs/dbgsym-root/DEBIAN/control, package gromacs-dbgsym, directory debian/.debhelper/gromacs/dbgsym-root dpkg-deb: building package 'gromacs-dbgsym' in 'debian/.debhelper/scratch-space/build-gromacs/gromacs-dbgsym_2018.3-1ubuntu1_arm64.deb'. Renaming gromacs-dbgsym_2018.3-1ubuntu1_arm64.deb to gromacs-dbgsym_2018.3-1ubuntu1_arm64.ddeb INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libgromacs3 (in debian/libgromacs3); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libgromacs3/DEBIAN/control, package libgromacs3, directory debian/libgromacs3 pkgstripfiles: Truncating usr/share/doc/libgromacs3/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libgromacs3 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgromacs3' in '../libgromacs3_2018.3-1ubuntu1_arm64.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/libgromacs3/dbgsym-root/DEBIAN/control, package libgromacs3-dbgsym, directory debian/.debhelper/libgromacs3/dbgsym-root dpkg-deb: building package 'libgromacs3-dbgsym' in 'debian/.debhelper/scratch-space/build-libgromacs3/libgromacs3-dbgsym_2018.3-1ubuntu1_arm64.deb'. Renaming gromacs-mpich-dbgsym_2018.3-1ubuntu1_arm64.deb to gromacs-mpich-dbgsym_2018.3-1ubuntu1_arm64.ddeb INFO: pkgstriptranslations version 141 pkgstriptranslations: processing gromacs-openmpi (in debian/gromacs-openmpi); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... Renaming libgromacs3-dbgsym_2018.3-1ubuntu1_arm64.deb to libgromacs3-dbgsym_2018.3-1ubuntu1_arm64.ddeb INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstriptranslations version 141 pkgstriptranslations: processing libgromacs-dev (in debian/libgromacs-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... pkgstripfiles: processing control file: debian/libgromacs-dev/DEBIAN/control, package libgromacs-dev, directory debian/libgromacs-dev Searching for duplicated docs in dependency libgromacs3... symlinking changelog.Debian.gz in libgromacs-dev to file in libgromacs3 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libgromacs-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libgromacs-dev' in '../libgromacs-dev_2018.3-1ubuntu1_arm64.deb'. INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... INFO: pkgstriptranslations version 141 pkgstriptranslations: processing gromacs-mpich (in debian/gromacs-mpich); do_strip: , oemstrip: INFO: pkgstripfiles: waiting for lock (gromacs-openmpi) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating usr/share/doc/gromacs-mpich/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package gromacs-mpich ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gromacs-mpich' in '../gromacs-mpich_2018.3-1ubuntu1_arm64.deb'. pkgstripfiles: Truncating usr/share/doc/gromacs-openmpi/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package gromacs-openmpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'gromacs-openmpi' in '../gromacs-openmpi_2018.3-1ubuntu1_arm64.deb'. INFO: pkgstriptranslations version 141 pkgstriptranslations: processing gromacs-openmpi-dbgsym (in debian/.debhelper/gromacs-openmpi/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/gromacs-openmpi/dbgsym-root/DEBIAN/control, package gromacs-openmpi-dbgsym, directory debian/.debhelper/gromacs-openmpi/dbgsym-root dpkg-deb: building package 'gromacs-openmpi-dbgsym' in 'debian/.debhelper/scratch-space/build-gromacs-openmpi/gromacs-openmpi-dbgsym_2018.3-1ubuntu1_arm64.deb'. Renaming gromacs-openmpi-dbgsym_2018.3-1ubuntu1_arm64.deb to gromacs-openmpi-dbgsym_2018.3-1ubuntu1_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../gromacs_2018.3-1ubuntu1_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build gromacs-2018.3 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180824-1055 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ gromacs_2018.3-1ubuntu1_arm64.changes: -------------------------------------- Format: 1.8 Date: Fri, 24 Aug 2018 08:38:27 +0000 Source: gromacs Binary: gromacs gromacs-data libgromacs3 libgromacs-dev gromacs-mpich gromacs-openmpi Architecture: arm64 Version: 2018.3-1ubuntu1 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Graham Inggs Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization libgromacs-dev - GROMACS molecular dynamics sim, development kit libgromacs3 - GROMACS molecular dynamics sim, shared libraries Changes: gromacs (2018.3-1ubuntu1) cosmic; 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It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v3) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Original-Maintainer: Debichem Team drwxr-xr-x root/root 0 2018-08-24 08:38 ./ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/bin/ -rwxr-xr-x root/root 7429024 2018-08-24 08:38 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 7388064 2018-08-24 08:38 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 792 2018-08-24 08:38 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 1094 2018-08-24 08:38 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz -rw-r--r-- root/root 21613 2018-01-11 06:10 ./usr/share/doc/gromacs-mpich/copyright drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/gromacs/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/ -rw-r--r-- root/root 55 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/gmx-completion-mdrun_mpi.mpich.bash -rw-r--r-- root/root 57 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/gmx-completion-mdrun_mpi_d.mpich.bash drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 212 2017-12-23 18:11 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/man/man1/ -rw-r--r-- root/root 6083 2018-08-24 08:38 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz lrwxrwxrwx root/root 0 2018-08-24 08:38 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz gromacs-openmpi_2018.3-1ubuntu1_arm64.deb ----------------------------------------- new debian package, version 2.0. size 5731480 bytes: control archive=2088 bytes. 1381 bytes, 28 lines control 724 bytes, 9 lines md5sums 1702 bytes, 53 lines * postinst #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh Package: gromacs-openmpi Source: gromacs Version: 2018.3-1ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 14514 Depends: openmpi-bin (>= 1.2.3), libc6 (>= 2.27), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhwloc5 (>= 1.11.10), libopenmpi3, libstdc++6 (>= 6), zlib1g (>= 1:1.2.0) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: optional Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. Original-Maintainer: Debichem Team drwxr-xr-x root/root 0 2018-08-24 08:38 ./ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/bin/ -rwxr-xr-x root/root 7420832 2018-08-24 08:38 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 7379872 2018-08-24 08:38 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/gromacs-openmpi/ -rw-r--r-- root/root 798 2018-08-24 08:38 ./usr/share/doc/gromacs-openmpi/README.Debian -rw-r--r-- root/root 1094 2018-08-24 08:38 ./usr/share/doc/gromacs-openmpi/changelog.Debian.gz -rw-r--r-- root/root 21613 2018-01-11 06:10 ./usr/share/doc/gromacs-openmpi/copyright drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/gromacs/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/ -rw-r--r-- root/root 57 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/gmx-completion-mdrun_mpi.openmpi.bash -rw-r--r-- root/root 59 2018-08-24 08:38 ./usr/share/gromacs/shell-specific/gmx-completion-mdrun_mpi_d.openmpi.bash drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 220 2017-12-23 18:11 ./usr/share/lintian/overrides/gromacs-openmpi drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/man/man1/ -rw-r--r-- root/root 6079 2018-08-24 08:38 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz lrwxrwxrwx root/root 0 2018-08-24 08:38 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_2018.3-1ubuntu1_arm64.deb --------------------------------- new debian package, version 2.0. size 216388 bytes: control archive=1128 bytes. 1030 bytes, 22 lines control 460 bytes, 8 lines md5sums Package: gromacs Version: 2018.3-1ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 774 Depends: gromacs-data (= 2018.3-1ubuntu1), libc6 (>= 2.17), libgcc1 (>= 1:3.0), libgromacs3, libstdc++6 (>= 5.2), libx11-6 Recommends: cpp Suggests: pymol Section: science Priority: optional Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. Original-Maintainer: Debichem Team drwxr-xr-x root/root 0 2018-08-24 08:38 ./ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/bin/ -rwxr-xr-x root/root 3378 2016-07-09 00:55 ./usr/bin/demux -rwxr-xr-x root/root 363416 2018-08-24 08:38 ./usr/bin/gmx -rwxr-xr-x root/root 363416 2018-08-24 08:38 ./usr/bin/gmx_d -rwxr-xr-x root/root 8209 2016-10-25 09:41 ./usr/bin/xplor2gmx drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 267 2016-07-09 00:55 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 3655 2017-12-23 18:11 ./usr/share/doc/gromacs/README.Debian -rw-r--r-- root/root 2329 2018-08-24 08:38 ./usr/share/doc/gromacs/README.gz lrwxrwxrwx root/root 0 2018-08-24 08:38 ./usr/share/doc/gromacs/changelog.Debian.gz -> ../libgromacs3/changelog.Debian.gz -rw-r--r-- root/root 21613 2018-01-11 06:10 ./usr/share/doc/gromacs/copyright libgromacs-dev_2018.3-1ubuntu1_arm64.deb ---------------------------------------- new debian package, version 2.0. size 200432 bytes: control archive=5004 bytes. 1354 bytes, 29 lines control 11628 bytes, 151 lines md5sums Package: libgromacs-dev Source: gromacs Version: 2018.3-1ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 1357 Depends: fftw3-dev, libgromacs3 (= 2018.3-1ubuntu1) Recommends: gromacs-data Suggests: gromacs-mpich (= 2018.3-1ubuntu1) | gromacs-openmpi (= 2018.3-1ubuntu1), libmpich-dev, libx11-dev, zlib1g-dev Breaks: gromacs-dev (<< 5.1-1~) Replaces: gromacs-dev (<< 5.1-1~) Section: libdevel Priority: optional Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled GROMACS builds also require their respective packages. 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root/root 1442 2018-08-24 08:38 ./usr/share/gromacs/template/README drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/gromacs/template/cmake/ -rw-r--r-- root/root 3297 2016-07-09 00:55 ./usr/share/gromacs/template/cmake/FindGROMACS.cmake -rw-r--r-- root/root 7012 2016-07-09 00:55 ./usr/share/gromacs/template/template.cpp libgromacs3_2018.3-1ubuntu1_arm64.deb ------------------------------------- new debian package, version 2.0. size 10136172 bytes: control archive=1252 bytes. 1223 bytes, 25 lines control 386 bytes, 5 lines md5sums 52 bytes, 2 lines shlibs 74 bytes, 2 lines triggers Package: libgromacs3 Source: gromacs Version: 2018.3-1ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 23323 Depends: libblas3 | libblas.so.3, libc6 (>= 2.27), libfftw3-double3 (>= 3.3.5), libfftw3-single3 (>= 3.3.5), libgcc1 (>= 1:3.0), libgomp1 (>= 4.9), libhwloc5 (>= 1.11.10), liblapack3 | liblapack.so.3, libstdc++6 (>= 7), zlib1g (>= 1:1.2.0) Breaks: gromacs (<< 5.1-1~) Section: libs Priority: optional Multi-Arch: same Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, shared libraries GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains the shared library, libgromacs. Original-Maintainer: Debichem Team drwxr-xr-x root/root 0 2018-08-24 08:38 ./ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/lib/aarch64-linux-gnu/ lrwxrwxrwx root/root 0 2018-08-24 08:38 ./usr/lib/aarch64-linux-gnu/libgromacs.so.3 -> libgromacs.so.3.3.0 -rw-r--r-- root/root 11949312 2018-08-24 08:38 ./usr/lib/aarch64-linux-gnu/libgromacs.so.3.3.0 lrwxrwxrwx root/root 0 2018-08-24 08:38 ./usr/lib/aarch64-linux-gnu/libgromacs_d.so.3 -> libgromacs_d.so.3.3.0 -rw-r--r-- root/root 11881376 2018-08-24 08:38 ./usr/lib/aarch64-linux-gnu/libgromacs_d.so.3.3.0 drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/doc/libgromacs3/ -rw-r--r-- root/root 1093 2018-08-24 08:38 ./usr/share/doc/libgromacs3/changelog.Debian.gz -rw-r--r-- root/root 21613 2018-01-11 06:10 ./usr/share/doc/libgromacs3/copyright drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-08-24 08:38 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 24 2017-12-23 18:11 ./usr/share/lintian/overrides/libgromacs3 +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build-Space: 12272320 Build-Time: 7932 Distribution: cosmic-proposed Host Architecture: arm64 Install-Time: 36 Job: gromacs_2018.3-1ubuntu1.dsc Machine Architecture: arm64 Package: gromacs Package-Time: 7972 Source-Version: 2018.3-1ubuntu1 Space: 12272320 Status: successful Version: 2018.3-1ubuntu1 -------------------------------------------------------------------------------- Finished at 20180824-1055 Build needed 02:12:52, 12272320k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=arm64 PACKAGEBUILD-15300679 Scanning for processes to kill in build PACKAGEBUILD-15300679