RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'f488b0e45187a0e7998365474d5a264ca4fd5172', '/home/buildd/filecache-default/8b669016202bc91bd6cca25d2a92d8606492bf56'] Synching the system clock with the buildd NTP service... 22 May 15:12:43 ntpdate[1239]: adjust time server 10.122.37.1 offset 0.000040 sec Unpacking chroot for build f488b0e45187a0e7998365474d5a264ca4fd5172 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'f488b0e45187a0e7998365474d5a264ca4fd5172'] Mounting chroot for build f488b0e45187a0e7998365474d5a264ca4fd5172 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'f488b0e45187a0e7998365474d5a264ca4fd5172', 'deb http://ftpmaster.internal/ubuntu oneiric main universe'] Overriding sources.list in build-f488b0e45187a0e7998365474d5a264ca4fd5172 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'f488b0e45187a0e7998365474d5a264ca4fd5172', 'amd64'] Updating debian chroot for build f488b0e45187a0e7998365474d5a264ca4fd5172 Ign http://ftpmaster.internal oneiric InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric Release [39.8 kB] Get:3 http://ftpmaster.internal oneiric/main amd64 Packages [1602 kB] Get:4 http://ftpmaster.internal oneiric/universe amd64 Packages [6148 kB] Ign http://ftpmaster.internal oneiric/main TranslationIndex Ign http://ftpmaster.internal oneiric/universe TranslationIndex Ign http://ftpmaster.internal oneiric/main Translation-en Ign http://ftpmaster.internal oneiric/universe Translation-en Fetched 7790 kB in 4s (1659 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash binutils cpp-4.6 g++-4.6 gcc-4.5-base gcc-4.6 gcc-4.6-base libdbus-1-3 libgcc1 libgcrypt11 libgnutls26 libgomp1 libgpg-error0 libldap-2.4-2 libpng12-0 libquadmath0 libreadline6 libstdc++6 libstdc++6-4.6-dev libtasn1-3 libudev0 linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler python2.7-minimal readline-common udev 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 28.8 MB of archives. After this operation, 2195 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! bash libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 binutils libdbus-1-3 libpng12-0 libudev0 libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 readline-common libreadline6 python2.7-minimal udev libldap-2.4-2 gcc-4.5-base linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main bash amd64 4.2-0ubuntu4 [608 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libgomp1 amd64 4.6.0-7ubuntu1 [25.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6-base amd64 4.6.0-7ubuntu1 [14.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6 amd64 4.6.0-7ubuntu1 [329 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main cpp-4.6 amd64 4.6.0-7ubuntu1 [4779 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libquadmath0 amd64 4.6.0-7ubuntu1 [126 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6-4.6-dev amd64 4.6.0-7ubuntu1 [1608 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main g++-4.6 amd64 4.6.0-7ubuntu1 [6918 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6 amd64 4.6.0-7ubuntu1 [7521 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libgcc1 amd64 1:4.6.0-7ubuntu1 [42.5 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main binutils amd64 2.21.51.20110421-6ubuntu1 [2566 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libdbus-1-3 amd64 1.4.8-3ubuntu1 [141 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libpng12-0 amd64 1.2.44-2ubuntu1 [131 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libudev0 amd64 170-0ubuntu1 [28.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libgpg-error0 amd64 1.10-0.3ubuntu1 [14.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main libgcrypt11 amd64 1.4.6-5ubuntu1 [268 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libtasn1-3 amd64 2.9-3ubuntu1 [43.2 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libgnutls26 amd64 2.10.5-1ubuntu2 [428 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main readline-common all 6.2-2 [49.8 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libreadline6 amd64 6.2-2 [139 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main python2.7-minimal amd64 2.7.1-9 [1640 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main udev amd64 170-0ubuntu1 [308 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main libldap-2.4-2 amd64 2.4.25-1ubuntu1 [184 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.5-base amd64 4.5.3-1ubuntu2 [12.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main linux-libc-dev amd64 2.6.39-3.9 [807 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main patch amd64 2.6.1-2 [80.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-create-dbgsym all 0.49 [8300 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main pkgbinarymangler all 98 [25.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.8 MB in 0s (30.1 MB/s) (Reading database ... 14236 files and directories currently installed.) Preparing to replace bash 4.2-0ubuntu3 (using .../bash_4.2-0ubuntu4_amd64.deb) ... Unpacking replacement bash ... Setting up bash (4.2-0ubuntu4) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 14236 files and directories currently installed.) Preparing to replace libgomp1 4.6.0-6ubuntu2 (using .../libgomp1_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.0-6ubuntu2 (using .../gcc-4.6-base_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.0-7ubuntu1) ... (Reading database ... 14236 files and directories currently installed.) Preparing to replace libstdc++6 4.6.0-6ubuntu2 (using .../libstdc++6_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14236 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.0-6ubuntu2 (using .../cpp-4.6_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.0-6ubuntu2 (using .../libquadmath0_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.0-6ubuntu2 (using .../libstdc++6-4.6-dev_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.0-6ubuntu2 (using .../g++-4.6_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.0-6ubuntu2 (using .../gcc-4.6_4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.0-6ubuntu2 (using .../libgcc1_1%3a4.6.0-7ubuntu1_amd64.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14249 files and directories currently installed.) Preparing to replace binutils 2.21.51.20110421-0ubuntu5 (using .../binutils_2.21.51.20110421-6ubuntu1_amd64.deb) ... Unpacking replacement binutils ... Preparing to replace libdbus-1-3 1.4.6-1ubuntu6 (using .../libdbus-1-3_1.4.8-3ubuntu1_amd64.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libpng12-0 1.2.44-1ubuntu3 (using .../libpng12-0_1.2.44-2ubuntu1_amd64.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libudev0 167-0ubuntu3 (using .../libudev0_170-0ubuntu1_amd64.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgpg-error0 1.10-0.2ubuntu1 (using .../libgpg-error0_1.10-0.3ubuntu1_amd64.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.4.6-4ubuntu2 (using .../libgcrypt11_1.4.6-5ubuntu1_amd64.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.7-1ubuntu1 (using .../libtasn1-3_2.9-3ubuntu1_amd64.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.8.6-1ubuntu2 (using .../libgnutls26_2.10.5-1ubuntu2_amd64.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace readline-common 6.2-1 (using .../readline-common_6.2-2_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-2) ... (Reading database ... 14249 files and directories currently installed.) Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_amd64.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14249 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.1-5ubuntu2 (using .../python2.7-minimal_2.7.1-9_amd64.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.1-9) ... (Reading database ... 14249 files and directories currently installed.) Preparing to replace udev 167-0ubuntu3 (using .../udev_170-0ubuntu1_amd64.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libldap-2.4-2 2.4.23-6ubuntu6 (using .../libldap-2.4-2_2.4.25-1ubuntu1_amd64.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace gcc-4.5-base 4.5.3-1ubuntu1 (using .../gcc-4.5-base_4.5.3-1ubuntu2_amd64.deb) ... Unpacking replacement gcc-4.5-base ... Preparing to replace linux-libc-dev 2.6.39-1.6 (using .../linux-libc-dev_2.6.39-3.9_amd64.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace patch 2.6.1-1 (using .../patch_2.6.1-2_amd64.deb) ... Unpacking replacement patch ... Preparing to replace pkg-create-dbgsym 0.48 (using .../pkg-create-dbgsym_0.49_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 97 (using .../pkgbinarymangler_98_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libgomp1 (4.6.0-7ubuntu1) ... Setting up cpp-4.6 (4.6.0-7ubuntu1) ... Setting up libquadmath0 (4.6.0-7ubuntu1) ... Setting up binutils (2.21.51.20110421-6ubuntu1) ... Setting up gcc-4.6 (4.6.0-7ubuntu1) ... Setting up libdbus-1-3 (1.4.8-3ubuntu1) ... Setting up libpng12-0 (1.2.44-2ubuntu1) ... Setting up libudev0 (170-0ubuntu1) ... Setting up libgpg-error0 (1.10-0.3ubuntu1) ... Setting up libgcrypt11 (1.4.6-5ubuntu1) ... Setting up libtasn1-3 (2.9-3ubuntu1) ... Setting up libgnutls26 (2.10.5-1ubuntu2) ... Setting up udev (170-0ubuntu1) ... Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up libldap-2.4-2 (2.4.25-1ubuntu1) ... Installing new version of config file /etc/ldap/ldap.conf ... Setting up gcc-4.5-base (4.5.3-1ubuntu2) ... Setting up linux-libc-dev (2.6.39-3.9) ... Setting up patch (2.6.1-2) ... Setting up pkg-create-dbgsym (0.49) ... Setting up pkgbinarymangler (98) ... Setting up libstdc++6-4.6-dev (4.6.0-7ubuntu1) ... Setting up g++-4.6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'f488b0e45187a0e7998365474d5a264ca4fd5172', 'amd64', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '--purpose=PRIMARY', '--architecture=amd64', '--comp=universe', 'gromacs_4.5.4-2.dsc'] Initiating build f488b0e45187a0e7998365474d5a264ca4fd5172 with 2 processor cores. Automatic build of gromacs_4.5.4-2 on yellow by sbuild/amd64 1.170.5 Build started at 20110522-1513 ****************************************************************************** gromacs_4.5.4-2.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing libopenmpi-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev libopenmpi-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev zlib1g-dev 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 36.3 MB of archives. After this operation, 132 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 x11-common libice6 x11proto-core-dev libice-dev libsm6 libxft2 libxp6 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base libpipeline1 libxml2 man-db libarchive1 libcurl3 libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper dpatch lesstif2 libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libnuma1 libtorque2 libxml2-dev openmpi-common libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1 amd64 2.0.1-7ubuntu3 [133 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6 amd64 2.4.4-1ubuntu2 [336 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main ttf-dejavu-core all 2.33-1 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main fontconfig-config all 2.8.0-2.2ubuntu1 [44.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1 amd64 2.8.0-2.2ubuntu1 [125 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libxau6 amd64 1:1.0.6-1ubuntu1 [8408 B] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp6 amd64 1:1.1.0-1ubuntu1 [12.8 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1 amd64 1.7-2ubuntu2 [40.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-data all 2:1.4.2-1ubuntu3 [169 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-6 amd64 2:1.4.2-1ubuntu3 [769 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libxext6 amd64 2:1.2.0-2ubuntu1 [33.8 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender1 amd64 1:0.9.6-1ubuntu1 [20.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main x11-common all 1:7.6+4ubuntu3 [69.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libice6 amd64 2:1.0.7-1ubuntu1 [46.4 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-core-dev all 7.0.21-2 [297 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libice-dev amd64 2:1.0.7-1ubuntu1 [135 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libsm6 amd64 2:1.2.0-1ubuntu1 [18.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libxft2 amd64 2.2.0-2ubuntu2 [42.9 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libxp6 amd64 1:1.0.1-1 [18.2 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libxau-dev amd64 1:1.0.6-1ubuntu1 [12.0 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp-dev amd64 1:1.1.0-1ubuntu1 [47.5 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-input-dev all 2.0.1-1ubuntu1 [68.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-kb-dev all 1.0.5-1 [25.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main xtrans-dev all 1.2.6-1 [80.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0 amd64 0.3-2 [3202 B] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0-dev amd64 0.3-2 [2412 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1-dev amd64 1.7-2ubuntu2 [79.7 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-dev amd64 2:1.4.2-1ubuntu3 [3165 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-xext-dev all 7.1.99.0~git20110111.9df8b776-0ubuntu2 [254 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main libxext-dev amd64 2:1.2.0-2ubuntu1 [139 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main libxp-dev amd64 1:1.0.1-1 [84.7 kB] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main libxt6 amd64 1:1.0.9-1ubuntu1 [183 kB] Get:35 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 amd64 5.04-5ubuntu2 [205 kB] Get:36 http://ftpmaster.internal/ubuntu/ oneiric/main file amd64 5.04-5ubuntu2 [22.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ oneiric/main libpopt0 amd64 1.16-1 [35.1 kB] Get:38 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils amd64 8.2.2ubuntu1 [198 kB] Get:39 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base amd64 0.18.1.1-3ubuntu1 [80.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base amd64 1.21-5 [1052 kB] Get:41 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 amd64 1.2.0-1 [26.1 kB] Get:42 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 amd64 2.7.8.dfsg-2 [664 kB] Get:43 http://ftpmaster.internal/ubuntu/ oneiric/main man-db amd64 2.6.0.2-1 [731 kB] Get:44 http://ftpmaster.internal/ubuntu/ oneiric/main libarchive1 amd64 2.8.4-1 [153 kB] Get:45 http://ftpmaster.internal/ubuntu/ oneiric/main libcurl3 amd64 7.21.3-1ubuntu1 [225 kB] Get:46 http://ftpmaster.internal/ubuntu/ oneiric/main libxmlrpc-core-c3-0 amd64 1.16.32-0ubuntu3 [118 kB] Get:47 http://ftpmaster.internal/ubuntu/ oneiric/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ oneiric/main cmake-data all 2.8.4+dfsg.1-2ubuntu1 [649 kB] Get:49 http://ftpmaster.internal/ubuntu/ oneiric/main cmake amd64 2.8.4+dfsg.1-2ubuntu1 [4109 kB] Get:50 http://ftpmaster.internal/ubuntu/ oneiric/main html2text amd64 1.3.2a-15 [104 kB] Get:51 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 amd64 0.6.2-1 [101 kB] Get:52 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 amd64 0.9.3-4 [426 kB] Get:53 http://ftpmaster.internal/ubuntu/ oneiric/main gettext amd64 0.18.1.1-3ubuntu1 [1329 kB] Get:54 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:56 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.1.6ubuntu2 [485 kB] Get:57 http://ftpmaster.internal/ubuntu/ oneiric/main dpatch all 2.0.31 [88.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2 amd64 1:0.95.2-1 [700 kB] Get:59 http://ftpmaster.internal/ubuntu/ oneiric/main libsm-dev amd64 2:1.2.0-1ubuntu1 [89.8 kB] Get:60 http://ftpmaster.internal/ubuntu/ oneiric/main libxt-dev amd64 1:1.0.9-1ubuntu1 [494 kB] Get:61 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-render-dev all 2:0.11.1-1 [18.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender-dev amd64 1:0.9.6-1ubuntu1 [29.9 kB] Get:63 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1-dev amd64 2.0.1-7ubuntu3 [217 kB] Get:64 http://ftpmaster.internal/ubuntu/ oneiric/main zlib1g-dev amd64 1:1.2.3.4.dfsg-3ubuntu3 [167 kB] Get:65 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6-dev amd64 2.4.4-1ubuntu2 [770 kB] Get:66 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-config amd64 0.26-1 [40.9 kB] Get:67 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1-dev amd64 2.8.0-2.2ubuntu1 [658 kB] Get:68 http://ftpmaster.internal/ubuntu/ oneiric/main libxft-dev amd64 2.2.0-2ubuntu2 [57.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2-dev amd64 1:0.95.2-1 [965 kB] Get:70 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr0 amd64 0.8.2-15ubuntu1 [22.5 kB] Get:71 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr-dev amd64 0.8.2-15ubuntu1 [29.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-3 amd64 3.2.2-1 [1400 kB] Get:73 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-dev amd64 3.2.2-1 [1844 kB] Get:74 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0ldbl amd64 1.15+dfsg-1 [1058 kB] Get:75 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0-dev amd64 1.15+dfsg-1 [1347 kB] Get:76 http://ftpmaster.internal/ubuntu/ oneiric/universe libnuma1 amd64 2.0.5-1 [21.0 kB] Get:77 http://ftpmaster.internal/ubuntu/ oneiric/universe libtorque2 amd64 2.4.8+dfsg-7 [115 kB] Get:78 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2-dev amd64 2.7.8.dfsg-2 [834 kB] Get:79 http://ftpmaster.internal/ubuntu/ oneiric/universe openmpi-common all 1.4.3-1ubuntu3 [87.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs1 amd64 1.1.3-2ubuntu1 [34.1 kB] Get:81 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs-dev amd64 1.1.3-2ubuntu1 [84.2 kB] Get:82 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-3 amd64 1.4~rc2-2 [809 kB] Get:83 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-dev amd64 1.4~rc2-2 [1069 kB] Get:84 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi1.3 amd64 1.4.3-1ubuntu3 [1403 kB] Get:85 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi-dev amd64 1.4.3-1ubuntu3 [2775 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 36.3 MB in 1s (19.7 MB/s) Selecting previously deselected package libexpat1. (Reading database ... 14242 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_amd64.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1ubuntu2_amd64.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2ubuntu1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2ubuntu1_amd64.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1ubuntu1_amd64.deb) ... Selecting previously deselected package libxdmcp6. 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Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.21-2_all.deb) ... Setting up x11-common (1:7.6+4ubuntu3) ... Selecting previously deselected package libice-dev. (Reading database ... 14785 files and directories currently installed.) Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-1ubuntu1_amd64.deb) ... Selecting previously deselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1ubuntu1_amd64.deb) ... Selecting previously deselected package libxft2. Unpacking libxft2 (from .../libxft2_2.2.0-2ubuntu2_amd64.deb) ... Selecting previously deselected package libxp6. Unpacking libxp6 (from .../libxp6_1%3a1.0.1-1_amd64.deb) ... Selecting previously deselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-1ubuntu1_amd64.deb) ... Selecting previously deselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-1ubuntu1_amd64.deb) ... Selecting previously deselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0.1-1ubuntu1_all.deb) ... Selecting previously deselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-1_all.deb) ... Selecting previously deselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-1_all.deb) ... Selecting previously deselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-2_amd64.deb) ... Selecting previously deselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-2_amd64.deb) ... Selecting previously deselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.7-2ubuntu2_amd64.deb) ... Selecting previously deselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.2-1ubuntu3_amd64.deb) ... Selecting previously deselected package x11proto-print-dev. Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-1_all.deb) ... Selecting previously deselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.1.99.0~git20110111.9df8b776-0ubuntu2_all.deb) ... Selecting previously deselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.2.0-2ubuntu1_amd64.deb) ... Selecting previously deselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-1_amd64.deb) ... Selecting previously deselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.0.9-1ubuntu1_amd64.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu2_amd64.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu2_amd64.deb) ... Selecting previously deselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1_amd64.deb) ... Selecting previously deselected package bsdmainutils. 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Selecting previously deselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-1ubuntu3_amd64.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-1ubuntu2) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-1) ... Setting up fontconfig-config (2.8.0-2.2ubuntu1) ... Setting up libfontconfig1 (2.8.0-2.2ubuntu1) ... Setting up libxau6 (1:1.0.6-1ubuntu1) ... Setting up libxdmcp6 (1:1.1.0-1ubuntu1) ... Setting up libxcb1 (1.7-2ubuntu2) ... Setting up libx11-data (2:1.4.2-1ubuntu3) ... Setting up libx11-6 (2:1.4.2-1ubuntu3) ... Setting up libxext6 (2:1.2.0-2ubuntu1) ... Setting up libxrender1 (1:0.9.6-1ubuntu1) ... Setting up libice6 (2:1.0.7-1ubuntu1) ... Setting up x11proto-core-dev (7.0.21-2) ... Setting up libice-dev (2:1.0.7-1ubuntu1) ... Setting up libsm6 (2:1.2.0-1ubuntu1) ... Setting up libxft2 (2.2.0-2ubuntu2) ... Setting up libxp6 (1:1.0.1-1) ... Setting up libxau-dev (1:1.0.6-1ubuntu1) ... Setting up libxdmcp-dev (1:1.1.0-1ubuntu1) ... Setting up x11proto-input-dev (2.0.1-1ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-1) ... Setting up xtrans-dev (1.2.6-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.7-2ubuntu2) ... Setting up libx11-dev (2:1.4.2-1ubuntu3) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.1.99.0~git20110111.9df8b776-0ubuntu2) ... Setting up libxext-dev (2:1.2.0-2ubuntu1) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.0.9-1ubuntu1) ... Setting up libmagic1 (5.04-5ubuntu2) ... Setting up file (5.04-5ubuntu2) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-5) ... Setting up libpipeline1 (1.2.0-1) ... Setting up libxml2 (2.7.8.dfsg-2) ... Setting up man-db (2.6.0.2-1) ... Building database of manual pages ... Setting up libarchive1 (2.8.4-1) ... Setting up libcurl3 (7.21.3-1ubuntu1) ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu3) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.4+dfsg.1-2ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.4+dfsg.1-2ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.1.6ubuntu2) ... Setting up dpatch (2.0.31) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libsm-dev (2:1.2.0-1ubuntu1) ... Setting up libxt-dev (1:1.0.9-1ubuntu1) ... Setting up x11proto-render-dev (2:0.11.1-1) ... Setting up libxrender-dev (1:0.9.6-1ubuntu1) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-1ubuntu2) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.8.0-2.2ubuntu1) ... Setting up libxft-dev (2.2.0-2ubuntu2) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1) ... Setting up libfftw3-dev (3.2.2-1) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-7) ... Setting up libxml2-dev (2.7.8.dfsg-2) ... Setting up openmpi-common (1.4.3-1ubuntu3) ... Setting up libibverbs1 (1.1.3-2ubuntu1) ... Setting up libibverbs-dev (1.1.3-2ubuntu1) ... Setting up libmpich2-3 (1.4~rc2-2) ... Setting up libmpich2-dev (1.4~rc2-2) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-1ubuntu3) ... Setting up libopenmpi-dev (1.4.3-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-2ubuntu1 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu8 gcc-4.6_4.6.0-7ubuntu1 g++-4.6_4.6.0-7ubuntu1 binutils_2.21.51.20110421-6ubuntu1 libstdc++6-4.6-dev_4.6.0-7ubuntu1 libstdc++6_4.6.0-7ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Mon Apr 25 21:36:46 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.4-2.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.4 dpkg-source: info: unpacking gromacs_4.5.4.orig.tar.gz dpkg-source: info: applying gromacs_4.5.4-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.4-2 dpkg-source --before-build gromacs-4.5.4 dpkg-buildpackage: host architecture amd64 /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 30_git_release-4.5-patches not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 30_git_release-4.5-patches to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - found -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - found -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/x86_64-linux-gnu/libX11.so;/usr/lib/x86_64-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/x86_64-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j2 -C build/basic make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 0%] [ 0%] Building C object 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src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 81%] Built target gmxpreprocess [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_disre.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dist.c.o [ 81%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dyndom.c.o [ 81%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 81%] Built target g_luck [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_enemat.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 82%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 82%] 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`/build/buildd/gromacs-4.5.4/build/basic' [ 87%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjconv.c.o Linking C executable gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 87%] Built target gmxdump [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjcat.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjorder.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 88%] Building C object 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`/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Linking C executable grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target grompp [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o Linking C executable mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable pdb2gmx Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv Linking C executable do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anadock Linking C executable g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Linking C executable g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_clustsize Linking C executable g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Linking C executable g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Linking C executable g_confrms Linking C executable g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] [ 91%] Built target g_confrms Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current Linking C executable g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densmap Linking C executable g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih Linking C executable g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Scanning dependencies of target g_disre Built target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre Linking C executable g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dist Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_dyndom Linking C executable g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_enemat Linking C executable g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Linking C executable g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_h2order Linking C executable g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Linking C executable g_kinetics Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_membed Linking C executable g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mindist [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Linking C executable g_mindist Linking C executable g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_msd Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Linking C executable g_nmens Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Linking C executable g_options Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_polystat Linking C executable g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal Linking C executable g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf Linking C executable g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_rmsdist [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Linking C executable g_rotacf Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o [ 96%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select Linking C executable g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient Linking C executable g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Scanning dependencies of target g_spatial Built target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_spol [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o [ 96%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Linking C executable g_spatial Linking C executable g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_spol Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o [ 97%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_traj Linking C executable g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_tune_pme [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Linking C executable g_tune_pme Linking C executable g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o Linking C executable g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o Linking C executable g_wheel Linking C executable genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o Linking C executable genconf Linking C executable genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable genrestr Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjcat Linking C executable make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o Linking C executable trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [100%] Linking C executable trjorder Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [100%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' /usr/bin/make -j2 -C build/basic-dp make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/replace.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_system_xdr.c.o [ 0%] Building C 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src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 81%] Built target gmxpreprocess [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 81%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 81%] Built target g_luck [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_disre.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dist.c.o [ 81%] Building C object 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src/tools/CMakeFiles/gmxana.dir/gmx_order.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 84%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 84%] Built target g_protonate [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_principal.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_polystat.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_potential.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rama.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rdf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 84%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o Linking C executable g_x2top_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 84%] Built target g_x2top [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rms.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rmsf.c.o [ 85%] Building C object 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object src/tools/CMakeFiles/gmxana.dir/gmx_trjorder.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o Linking C shared library libgmxana_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o Linking C executable gmxdump_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o Linking C executable grompp_d [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o Linking C executable pdb2gmx_d [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target pdb2gmx [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable tpbconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target tpbconv [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable mdrun_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf_d Linking C executable do_dssp_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze_d Linking C executable g_anadock_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_angle Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o Linking C executable g_bar_d Linking C executable g_angle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_bond_d [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_bundle Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_cluster [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_cluster_d Linking C executable g_chi_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize_d Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_covar_d Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density_d Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_densmap Linking C executable g_dielectric_d make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dih_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_dipoles_d Linking C executable g_disre_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o [ 92%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dist_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_enemat_d make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_filter_d Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_gyrate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_h2order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Linking C executable g_hbond_d Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_helixorient_d Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_kinetics_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie_d Linking C executable g_mdmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o [ 94%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed_d Linking C executable g_mindist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_morph Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd_d Linking C executable g_morph_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmeig_d Linking C executable g_nmens_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_nmtraj_d Linking C executable g_options_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o [ 95%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_order_d Linking C executable g_pme_error_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Linking C executable g_polystat_d Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_potential_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Scanning dependencies of target g_principal Built target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal_d Linking C executable g_rama_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf_d Linking C executable g_rms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsdist_d Linking C executable g_rmsf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotacf [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf_d Linking C executable g_rotmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_rotmat Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr_d Linking C executable g_sas_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Built target g_sas Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select_d Linking C executable g_sgangle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Linking C executable g_sham_d Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Scanning dependencies of target g_spol Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Linking C executable g_spatial_d Linking C executable g_spol_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_tcaf_d [ 97%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Linking C executable g_traj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_vanhove Linking C executable g_tune_pme_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Linking C executable g_vanhove_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o Linking C executable g_velacc_d Linking C executable g_wham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_wheel_d Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o Linking C executable genbox_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o Linking C executable genion_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: Leaving directory 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library libgmxpreprocess_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian touch build-openmpi /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 60%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 63%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 65%] Built target ngmx [ 73%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 77%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 77%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 78%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 78%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxana make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target pdb2gmx [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anaeig [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] [ 90%] Built target g_analyze Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_bar [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_clustsize [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] [ 91%] Built target g_covar Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_dist Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 93%] Built target g_energy Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_filter Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_h2order Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_helixorient Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mdmat [ 94%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_polystat Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_potential [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sgangle [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Built target g_velacc Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Built target genconf Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] [ 98%] Built target make_edi Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] [ 99%] Built target trjcat Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjorder [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 60%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 63%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 65%] Built target ngmx [ 73%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 77%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 77%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] [ 89%] Built target gmxana Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anadock [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target g_analyze Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_bar [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Built target g_bundle Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Built target g_cluster Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Built target g_confrms Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 92%] Built target g_density Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Built target g_dielectric Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dih [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Built target g_filter Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_h2order [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_lie [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Built target g_mindist Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_morph [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 95%] Built target g_nmeig Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_nmtraj Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_order Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_polystat [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 96%] Built target g_rotmat Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sas [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Built target g_sgangle Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Built target g_vanhove Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Built target g_wham Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genbox [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] [ 98%] Built target make_edi Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target trjcat [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Built target trjorder [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- 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-- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG43a1.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexwat-ferguson.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/residuetypes.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_pme_error.1 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_luck.1 debian/man/g_kinetics.1 debian/man/g_options.1 for manpage in /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d # three lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) # - binary-without-manpage: shipped in gromacs-data instead. dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j2 -C build/openmpi install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 93%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' /usr/bin/make -j2 -C build/openmpi-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 93%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/include /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring gromacs-openmpi is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records grep: ../gromacs-data/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency gromacs-data... dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.4-2_amd64.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.4-2_amd64.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.4-2_amd64.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-openmpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-openmpi' in `../gromacs-openmpi_4.5.4-2_amd64.deb'. dpkg-genchanges -B -mUbuntu/amd64 Build Daemon >../gromacs_4.5.4-2_amd64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.4 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110522-1536 chroot-autobuild/build/buildd/gromacs_4.5.4-2_amd64.deb: new debian package, version 2.0. size 5828868 bytes: control archive= 6168 bytes. 1195 bytes, 26 lines control 10467 bytes, 200 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.4-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 14120 Depends: gromacs-data (= 4.5.4-2), libc6 (>= 2.11), libfftw3-3, libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.4-2_amd64.deb: new debian package, version 2.0. size 287050 bytes: control archive= 7286 bytes. 1275 bytes, 27 lines control 14443 bytes, 217 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.4-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1876 Depends: gromacs (= 4.5.4-2), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.4-2) | gromacs-openmpi (= 4.5.4-2), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_amd64.deb: new debian package, version 2.0. size 3846026 bytes: control archive= 2238 bytes. 1201 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.4-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8488 Depends: libc6 (>= 2.11), libfftw3-3, libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_amd64.deb: new debian package, version 2.0. size 3847652 bytes: control archive= 2271 bytes. 1242 bytes, 28 lines control 932 bytes, 13 lines md5sums 1820 bytes, 58 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh 246 bytes, 6 lines shlibs Package: gromacs-openmpi Source: gromacs Version: 4.5.4-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8492 Depends: libc6 (>= 2.11), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs_4.5.4-2_amd64.deb: drwxr-xr-x root/root 0 2011-05-22 15:35 ./ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:34 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 3993 2011-05-22 15:16 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 203 2010-09-29 11:35 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 2583 2011-05-22 15:16 ./usr/share/doc/gromacs/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:16 ./usr/share/doc/gromacs/copyright -rw-r--r-- root/root 2257 2011-05-22 15:35 ./usr/share/doc/gromacs/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2011-05-22 15:16 ./usr/share/lintian/overrides/gromacs drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/lib/ -rw-r--r-- root/root 2735184 2011-05-22 15:35 ./usr/lib/libgmx.so.6 -rw-r--r-- root/root 959344 2011-05-22 15:35 ./usr/lib/libmd.so.6 -rw-r--r-- root/root 441824 2011-05-22 15:35 ./usr/lib/libgmxpreprocess.so.6 -rw-r--r-- root/root 1554992 2011-05-22 15:35 ./usr/lib/libgmxana.so.6 -rw-r--r-- root/root 2939920 2011-05-22 15:35 ./usr/lib/libgmx_d.so.6 -rw-r--r-- root/root 922448 2011-05-22 15:35 ./usr/lib/libmd_d.so.6 -rw-r--r-- root/root 437760 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_d.so.6 -rw-r--r-- root/root 1531792 2011-05-22 15:35 ./usr/lib/libgmxana_d.so.6 drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/bin/ -rwxr-xr-x root/root 172064 2011-05-22 15:35 ./usr/bin/mdrun -rwxr-xr-x root/root 48424 2011-05-22 15:35 ./usr/bin/grompp -rwxr-xr-x root/root 23056 2011-05-22 15:35 ./usr/bin/tpbconv -rwxr-xr-x root/root 52088 2011-05-22 15:35 ./usr/bin/pdb2gmx -rwxr-xr-x root/root 10360 2011-05-22 15:35 ./usr/bin/g_protonate -rwxr-xr-x root/root 6136 2011-05-22 15:35 ./usr/bin/g_luck -rwxr-xr-x root/root 22928 2011-05-22 15:35 ./usr/bin/gmxdump -rwxr-xr-x root/root 23128 2011-05-22 15:35 ./usr/bin/g_x2top -rwxr-xr-x root/root 27232 2011-05-22 15:35 ./usr/bin/gmxcheck -rwxr-xr-x root/root 22960 2011-05-22 15:35 ./usr/bin/do_dssp -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/editconf -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/eneconv -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/genbox -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/genconf -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/genrestr -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/g_nmtraj -rwxr-xr-x root/root 31008 2011-05-22 15:35 ./usr/bin/make_ndx -rwxr-xr-x root/root 10432 2011-05-22 15:35 ./usr/bin/mk_angndx -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/trjcat -rwxr-xr-x root/root 6088 2011-05-22 15:35 ./usr/bin/trjconv -rwxr-xr-x root/root 6088 2011-05-22 15:35 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./usr/lib/libmd_d.so -> libmd_d.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmx_mpi.mpich.so -> libgmx_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmx_mpi_d.mpich.so -> libgmx_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi.mpich.so -> libgmxpreprocess_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so -> libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libmd_mpi.mpich.so -> libmd_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libmd_mpi_d.mpich.so -> libmd_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmx_mpi.openmpi.so -> libgmx_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmx_mpi_d.openmpi.so -> libgmx_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi.openmpi.so -> libgmxpreprocess_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so -> libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libmd_mpi.openmpi.so -> libmd_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/lib/libmd_mpi_d.openmpi.so -> libmd_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/share/doc/gromacs-dev/changelog.Debian.gz -> ../gromacs/changelog.Debian.gz chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_amd64.deb: drwxr-xr-x root/root 0 2011-05-22 15:35 ./ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/bin/ -rwxr-xr-x root/root 167904 2011-05-22 15:35 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 163792 2011-05-22 15:35 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/man/man1/ -rw-r--r-- root/root 6217 2011-05-22 15:35 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-05-22 15:16 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 1427 2011-05-22 15:29 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:16 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 2257 2011-05-22 15:35 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/lib/ -rw-r--r-- root/root 2633952 2011-05-22 15:35 ./usr/lib/libgmx_mpi.mpich.so.6 -rw-r--r-- root/root 955216 2011-05-22 15:35 ./usr/lib/libmd_mpi.mpich.so.6 -rw-r--r-- root/root 441824 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi.mpich.so.6 -rw-r--r-- root/root 2842784 2011-05-22 15:35 ./usr/lib/libgmx_mpi_d.mpich.so.6 -rw-r--r-- root/root 918320 2011-05-22 15:35 ./usr/lib/libmd_mpi_d.mpich.so.6 -rw-r--r-- root/root 437760 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_amd64.deb: drwxr-xr-x root/root 0 2011-05-22 15:35 ./ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/bin/ -rwxr-xr-x root/root 167904 2011-05-22 15:35 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 163792 2011-05-22 15:35 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/man/man1/ -rw-r--r-- root/root 6218 2011-05-22 15:35 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2011-05-22 15:16 ./usr/share/lintian/overrides/gromacs-openmpi drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/share/doc/gromacs-openmpi/ -rw-r--r-- root/root 1435 2011-05-22 15:34 ./usr/share/doc/gromacs-openmpi/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:16 ./usr/share/doc/gromacs-openmpi/copyright -rw-r--r-- root/root 2259 2011-05-22 15:36 ./usr/share/doc/gromacs-openmpi/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:35 ./usr/lib/ -rw-r--r-- root/root 2633952 2011-05-22 15:35 ./usr/lib/libgmx_mpi.openmpi.so.6 -rw-r--r-- root/root 959312 2011-05-22 15:35 ./usr/lib/libmd_mpi.openmpi.so.6 -rw-r--r-- root/root 441824 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -rw-r--r-- root/root 2842784 2011-05-22 15:35 ./usr/lib/libgmx_mpi_d.openmpi.so.6 -rw-r--r-- root/root 918320 2011-05-22 15:35 ./usr/lib/libmd_mpi_d.openmpi.so.6 -rw-r--r-- root/root 437760 2011-05-22 15:35 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:35 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_4.5.4-2_amd64.changes: Format: 1.8 Date: Mon, 25 Apr 2011 13:47:00 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: amd64 Version: 4.5.4-2 Distribution: oneiric Urgency: low Maintainer: Ubuntu/amd64 Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.4-2) unstable; urgency=low . * control: remove obsolete Build-Depends and Suggests on libice-dev, libsm-dev, libxext-dev, libxp-dev, libxt-dev. Update Standards-Version to 3.9.2. * patches/30_git_release-4.5-patches.dpatch: Routine update from upstream git, to commit 873563ef of 22 April 2011. * patches/31_manpages.dpatch: Various minor spelling and header fixes. * lintian-overrides.gromacs: Remove checks no longer needed, per #120323. * rules: Switch to using dh_lintian. Checksums-Sha1: a0c6097029fe327ee8aa3bdc35c42f73124709a7 5828868 gromacs_4.5.4-2_amd64.deb 6627a5f549d72ed7fd9b1a81ad7994a75ec5147b 287050 gromacs-dev_4.5.4-2_amd64.deb cf597aea6a25b61bf3415e9627a035aa1f31c0c2 3846026 gromacs-mpich_4.5.4-2_amd64.deb d1a16c844a9f9bc17f8e77fa8e1ac8e8a905fd4a 3847652 gromacs-openmpi_4.5.4-2_amd64.deb Checksums-Sha256: 555141637b9cfd2aebd7f17c1de3896b119d1a7adf4329f733638d06637bf9d1 5828868 gromacs_4.5.4-2_amd64.deb 460df5a87f20e5887990f8b1d52e78971cdf1993fc0fe52e66733c1c8b89f68a 287050 gromacs-dev_4.5.4-2_amd64.deb a398ebd10ca4d57b1af0d59eaec9ca772acb2024f9dac2b49a03c8c1de4806f2 3846026 gromacs-mpich_4.5.4-2_amd64.deb 3ae1fe2f59ee3c236abb61a4b14265d13266ab59c0df80dc8cd6649a341a2551 3847652 gromacs-openmpi_4.5.4-2_amd64.deb Files: c22dca70305192a9338c922755130cf0 5828868 science extra gromacs_4.5.4-2_amd64.deb 8c8950dcd79e90e5d05ec91fcb6c43f8 287050 devel extra gromacs-dev_4.5.4-2_amd64.deb 8154385c122fca4b699f7a9de66e595a 3846026 science extra gromacs-mpich_4.5.4-2_amd64.deb a4e1a14a1719f39bbfbc49a07d48d4e9 3847652 science extra gromacs-openmpi_4.5.4-2_amd64.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.4 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libibverbs-dev libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libibverbs1 libfftw3-dev x11-common libx11-dev libcroco3 libopenmpi1.3 x11proto-print-dev libxt-dev libpopt0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils openmpi-common libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libtorque2 x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libopenmpi-dev libnuma1 libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev libxrender-dev gettext-base libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 20407 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libopenmpi-dev ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing libibverbs-dev ... Removing gettext ... Removing file ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libxt-dev ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing openmpi-common ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing pkg-config ... Removing libxmlrpc-core-c3-0 ... Purging configuration files for libxmlrpc-core-c3-0 ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libx11-dev ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... Purging configuration files for x11-common ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110522-1536 Build needed 00:19:38, 299960k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'f488b0e45187a0e7998365474d5a264ca4fd5172'] Scanning for processes to kill in build /home/buildd/build-f488b0e45187a0e7998365474d5a264ca4fd5172/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'f488b0e45187a0e7998365474d5a264ca4fd5172'] Unmounting chroot for build f488b0e45187a0e7998365474d5a264ca4fd5172... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'f488b0e45187a0e7998365474d5a264ca4fd5172'] Removing build f488b0e45187a0e7998365474d5a264ca4fd5172