RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '2fa896b636f90864438c084fc6f0be6c578a5646', '/home/buildd/filecache-default/39ea897fae8f7252c8241cccaa394964cbfe7cd0'] Synching the system clock with the buildd NTP service... 22 May 15:12:44 ntpdate[678]: adjust time server 10.211.37.1 offset -0.001095 sec Unpacking chroot for build 2fa896b636f90864438c084fc6f0be6c578a5646 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '2fa896b636f90864438c084fc6f0be6c578a5646'] Mounting chroot for build 2fa896b636f90864438c084fc6f0be6c578a5646 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '2fa896b636f90864438c084fc6f0be6c578a5646', 'deb http://ftpmaster.internal/ubuntu oneiric main universe'] Overriding sources.list in build-2fa896b636f90864438c084fc6f0be6c578a5646 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '2fa896b636f90864438c084fc6f0be6c578a5646', 'i386'] Updating debian chroot for build 2fa896b636f90864438c084fc6f0be6c578a5646 Ign http://ftpmaster.internal oneiric InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric Release [39.8 kB] Get:3 http://ftpmaster.internal oneiric/main i386 Packages [1602 kB] Get:4 http://ftpmaster.internal oneiric/universe i386 Packages [6164 kB] Ign http://ftpmaster.internal oneiric/main TranslationIndex Ign http://ftpmaster.internal oneiric/universe TranslationIndex Ign http://ftpmaster.internal oneiric/main Translation-en Ign http://ftpmaster.internal oneiric/universe Translation-en Fetched 7806 kB in 8s (894 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash binutils cpp-4.6 g++-4.6 gcc-4.5-base gcc-4.6 gcc-4.6-base libdbus-1-3 libgcc1 libgcrypt11 libgnutls26 libgomp1 libgpg-error0 libldap-2.4-2 libpng12-0 libquadmath0 libreadline6 libstdc++6 libstdc++6-4.6-dev libtasn1-3 libudev0 linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler python2.7-minimal readline-common udev 28 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 27.7 MB of archives. After this operation, 2339 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! bash libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 binutils libdbus-1-3 libpng12-0 libudev0 libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 readline-common libreadline6 python2.7-minimal udev libldap-2.4-2 gcc-4.5-base linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main bash i386 4.2-0ubuntu4 [583 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libgomp1 i386 4.6.0-7ubuntu1 [28.3 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6-base i386 4.6.0-7ubuntu1 [14.7 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6 i386 4.6.0-7ubuntu1 [340 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main cpp-4.6 i386 4.6.0-7ubuntu1 [4605 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libquadmath0 i386 4.6.0-7ubuntu1 [196 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6-4.6-dev i386 4.6.0-7ubuntu1 [1590 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main g++-4.6 i386 4.6.0-7ubuntu1 [6162 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6 i386 4.6.0-7ubuntu1 [7532 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libgcc1 i386 1:4.6.0-7ubuntu1 [54.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main binutils i386 2.21.51.20110421-6ubuntu1 [2324 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libdbus-1-3 i386 1.4.8-3ubuntu1 [144 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libpng12-0 i386 1.2.44-2ubuntu1 [135 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libudev0 i386 170-0ubuntu1 [32.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libgpg-error0 i386 1.10-0.3ubuntu1 [14.5 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main libgcrypt11 i386 1.4.6-5ubuntu1 [269 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libtasn1-3 i386 2.9-3ubuntu1 [43.9 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libgnutls26 i386 2.10.5-1ubuntu2 [421 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main readline-common all 6.2-2 [49.8 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libreadline6 i386 6.2-2 [134 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main python2.7-minimal i386 2.7.1-9 [1579 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main udev i386 170-0ubuntu1 [337 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main libldap-2.4-2 i386 2.4.25-1ubuntu1 [184 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.5-base i386 4.5.3-1ubuntu2 [12.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main linux-libc-dev i386 2.6.39-3.9 [789 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main patch i386 2.6.1-2 [86.5 kB] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-create-dbgsym all 0.49 [8300 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main pkgbinarymangler all 98 [25.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 27.7 MB in 1s (21.8 MB/s) (Reading database ... 14265 files and directories currently installed.) Preparing to replace bash 4.2-0ubuntu3 (using .../bash_4.2-0ubuntu4_i386.deb) ... Unpacking replacement bash ... Setting up bash (4.2-0ubuntu4) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 14265 files and directories currently installed.) Preparing to replace libgomp1 4.6.0-6ubuntu2 (using .../libgomp1_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.0-6ubuntu2 (using .../gcc-4.6-base_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.0-7ubuntu1) ... (Reading database ... 14265 files and directories currently installed.) Preparing to replace libstdc++6 4.6.0-6ubuntu2 (using .../libstdc++6_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14265 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.0-6ubuntu2 (using .../cpp-4.6_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.0-6ubuntu2 (using .../libquadmath0_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.0-6ubuntu2 (using .../libstdc++6-4.6-dev_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.0-6ubuntu2 (using .../g++-4.6_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.0-6ubuntu2 (using .../gcc-4.6_4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.0-6ubuntu2 (using .../libgcc1_1%3a4.6.0-7ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14278 files and directories currently installed.) Preparing to replace binutils 2.21.51.20110421-0ubuntu5 (using .../binutils_2.21.51.20110421-6ubuntu1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace libdbus-1-3 1.4.6-1ubuntu6 (using .../libdbus-1-3_1.4.8-3ubuntu1_i386.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libpng12-0 1.2.44-1ubuntu3 (using .../libpng12-0_1.2.44-2ubuntu1_i386.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libudev0 167-0ubuntu3 (using .../libudev0_170-0ubuntu1_i386.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgpg-error0 1.10-0.2ubuntu1 (using .../libgpg-error0_1.10-0.3ubuntu1_i386.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.4.6-4ubuntu2 (using .../libgcrypt11_1.4.6-5ubuntu1_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.7-1ubuntu1 (using .../libtasn1-3_2.9-3ubuntu1_i386.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.8.6-1ubuntu2 (using .../libgnutls26_2.10.5-1ubuntu2_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace readline-common 6.2-1 (using .../readline-common_6.2-2_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-2) ... (Reading database ... 14278 files and directories currently installed.) Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_i386.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14278 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.1-5ubuntu2 (using .../python2.7-minimal_2.7.1-9_i386.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.1-9) ... (Reading database ... 14278 files and directories currently installed.) Preparing to replace udev 167-0ubuntu3 (using .../udev_170-0ubuntu1_i386.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libldap-2.4-2 2.4.23-6ubuntu6 (using .../libldap-2.4-2_2.4.25-1ubuntu1_i386.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace gcc-4.5-base 4.5.3-1ubuntu1 (using .../gcc-4.5-base_4.5.3-1ubuntu2_i386.deb) ... Unpacking replacement gcc-4.5-base ... Preparing to replace linux-libc-dev 2.6.39-1.6 (using .../linux-libc-dev_2.6.39-3.9_i386.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace patch 2.6.1-1 (using .../patch_2.6.1-2_i386.deb) ... Unpacking replacement patch ... Preparing to replace pkg-create-dbgsym 0.48 (using .../pkg-create-dbgsym_0.49_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 97 (using .../pkgbinarymangler_98_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libgomp1 (4.6.0-7ubuntu1) ... Setting up cpp-4.6 (4.6.0-7ubuntu1) ... Setting up libquadmath0 (4.6.0-7ubuntu1) ... Setting up binutils (2.21.51.20110421-6ubuntu1) ... Setting up gcc-4.6 (4.6.0-7ubuntu1) ... Setting up libdbus-1-3 (1.4.8-3ubuntu1) ... Setting up libpng12-0 (1.2.44-2ubuntu1) ... Setting up libudev0 (170-0ubuntu1) ... Setting up libgpg-error0 (1.10-0.3ubuntu1) ... Setting up libgcrypt11 (1.4.6-5ubuntu1) ... Setting up libtasn1-3 (2.9-3ubuntu1) ... Setting up libgnutls26 (2.10.5-1ubuntu2) ... Setting up udev (170-0ubuntu1) ... Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up libldap-2.4-2 (2.4.25-1ubuntu1) ... Installing new version of config file /etc/ldap/ldap.conf ... Setting up gcc-4.5-base (4.5.3-1ubuntu2) ... Setting up linux-libc-dev (2.6.39-3.9) ... Setting up patch (2.6.1-2) ... Setting up pkg-create-dbgsym (0.49) ... Setting up pkgbinarymangler (98) ... Setting up libstdc++6-4.6-dev (4.6.0-7ubuntu1) ... Setting up g++-4.6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '2fa896b636f90864438c084fc6f0be6c578a5646', 'i386', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'gromacs_4.5.4-2.dsc'] Initiating build 2fa896b636f90864438c084fc6f0be6c578a5646 with 2 processor cores. Automatic build of gromacs_4.5.4-2 on rothera by sbuild/i386 1.170.5 Build started at 20110522-1513 ****************************************************************************** gromacs_4.5.4-2.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing libopenmpi-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev libopenmpi-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev zlib1g-dev 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 35.0 MB of archives. After this operation, 122 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 x11-common libice6 x11proto-core-dev libice-dev libsm6 libxft2 libxp6 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base libpipeline1 libxml2 man-db libarchive1 libcurl3 libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper dpatch lesstif2 libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libnuma1 libtorque2 libxml2-dev openmpi-common libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1 i386 2.0.1-7ubuntu3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6 i386 2.4.4-1ubuntu2 [314 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main ttf-dejavu-core all 2.33-1 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main fontconfig-config all 2.8.0-2.2ubuntu1 [44.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1 i386 2.8.0-2.2ubuntu1 [126 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libxau6 i386 1:1.0.6-1ubuntu1 [7864 B] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp6 i386 1:1.1.0-1ubuntu1 [11.7 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1 i386 1.7-2ubuntu2 [36.8 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-data all 2:1.4.2-1ubuntu3 [169 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-6 i386 2:1.4.2-1ubuntu3 [735 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libxext6 i386 2:1.2.0-2ubuntu1 [29.5 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender1 i386 1:0.9.6-1ubuntu1 [18.6 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main x11-common all 1:7.6+4ubuntu3 [69.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libice6 i386 2:1.0.7-1ubuntu1 [42.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-core-dev all 7.0.21-2 [297 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libice-dev i386 2:1.0.7-1ubuntu1 [127 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libsm6 i386 2:1.2.0-1ubuntu1 [16.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libxft2 i386 2.2.0-2ubuntu2 [38.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libxp6 i386 1:1.0.1-1 [17.7 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libxau-dev i386 1:1.0.6-1ubuntu1 [11.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp-dev i386 1:1.1.0-1ubuntu1 [46.0 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-input-dev all 2.0.1-1ubuntu1 [68.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-kb-dev all 1.0.5-1 [25.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main xtrans-dev all 1.2.6-1 [80.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0 i386 0.3-2 [3196 B] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0-dev i386 0.3-2 [2414 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1-dev i386 1.7-2ubuntu2 [72.6 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-dev i386 2:1.4.2-1ubuntu3 [3104 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-xext-dev all 7.1.99.0~git20110111.9df8b776-0ubuntu2 [254 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main libxext-dev i386 2:1.2.0-2ubuntu1 [130 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main libxp-dev i386 1:1.0.1-1 [83.3 kB] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main libxt6 i386 1:1.0.9-1ubuntu1 [161 kB] Get:35 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 i386 5.04-5ubuntu2 [204 kB] Get:36 http://ftpmaster.internal/ubuntu/ oneiric/main file i386 5.04-5ubuntu2 [22.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ oneiric/main libpopt0 i386 1.16-1 [33.9 kB] Get:38 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils i386 8.2.2ubuntu1 [194 kB] Get:39 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base i386 0.18.1.1-3ubuntu1 [56.6 kB] Get:40 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base i386 1.21-5 [990 kB] Get:41 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 i386 1.2.0-1 [23.5 kB] Get:42 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 i386 2.7.8.dfsg-2 [607 kB] Get:43 http://ftpmaster.internal/ubuntu/ oneiric/main man-db i386 2.6.0.2-1 [716 kB] Get:44 http://ftpmaster.internal/ubuntu/ oneiric/main libarchive1 i386 2.8.4-1 [153 kB] Get:45 http://ftpmaster.internal/ubuntu/ oneiric/main libcurl3 i386 7.21.3-1ubuntu1 [220 kB] Get:46 http://ftpmaster.internal/ubuntu/ oneiric/main libxmlrpc-core-c3-0 i386 1.16.32-0ubuntu3 [105 kB] Get:47 http://ftpmaster.internal/ubuntu/ oneiric/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ oneiric/main cmake-data all 2.8.4+dfsg.1-2ubuntu1 [649 kB] Get:49 http://ftpmaster.internal/ubuntu/ oneiric/main cmake i386 2.8.4+dfsg.1-2ubuntu1 [4167 kB] Get:50 http://ftpmaster.internal/ubuntu/ oneiric/main html2text i386 1.3.2a-15 [101 kB] Get:51 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 i386 0.9.3-4 [431 kB] Get:53 http://ftpmaster.internal/ubuntu/ oneiric/main gettext i386 0.18.1.1-3ubuntu1 [1180 kB] Get:54 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:56 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.1.6ubuntu2 [485 kB] Get:57 http://ftpmaster.internal/ubuntu/ oneiric/main dpatch all 2.0.31 [88.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2 i386 1:0.95.2-1 [649 kB] Get:59 http://ftpmaster.internal/ubuntu/ oneiric/main libsm-dev i386 2:1.2.0-1ubuntu1 [87.7 kB] Get:60 http://ftpmaster.internal/ubuntu/ oneiric/main libxt-dev i386 1:1.0.9-1ubuntu1 [457 kB] Get:61 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-render-dev all 2:0.11.1-1 [18.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender-dev i386 1:0.9.6-1ubuntu1 [27.2 kB] Get:63 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1-dev i386 2.0.1-7ubuntu3 [211 kB] Get:64 http://ftpmaster.internal/ubuntu/ oneiric/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu3 [160 kB] Get:65 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6-dev i386 2.4.4-1ubuntu2 [726 kB] Get:66 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-config i386 0.26-1 [39.9 kB] Get:67 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1-dev i386 2.8.0-2.2ubuntu1 [650 kB] Get:68 http://ftpmaster.internal/ubuntu/ oneiric/main libxft-dev i386 2.2.0-2ubuntu2 [49.9 kB] Get:69 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2-dev i386 1:0.95.2-1 [864 kB] Get:70 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr0 i386 0.8.2-15ubuntu1 [19.0 kB] Get:71 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr-dev i386 0.8.2-15ubuntu1 [29.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-3 i386 3.2.2-1 [1456 kB] Get:73 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-dev i386 3.2.2-1 [1971 kB] Get:74 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0ldbl i386 1.15+dfsg-1 [961 kB] Get:75 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0-dev i386 1.15+dfsg-1 [1241 kB] Get:76 http://ftpmaster.internal/ubuntu/ oneiric/universe libnuma1 i386 2.0.5-1 [18.9 kB] Get:77 http://ftpmaster.internal/ubuntu/ oneiric/universe libtorque2 i386 2.4.8+dfsg-7 [105 kB] Get:78 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2-dev i386 2.7.8.dfsg-2 [745 kB] Get:79 http://ftpmaster.internal/ubuntu/ oneiric/universe openmpi-common all 1.4.3-1ubuntu3 [87.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs1 i386 1.1.3-2ubuntu1 [32.1 kB] Get:81 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs-dev i386 1.1.3-2ubuntu1 [80.9 kB] Get:82 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-3 i386 1.4~rc2-2 [793 kB] Get:83 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-dev i386 1.4~rc2-2 [1028 kB] Get:84 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi1.3 i386 1.4.3-1ubuntu3 [1243 kB] Get:85 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi-dev i386 1.4.3-1ubuntu3 [2541 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.0 MB in 1s (17.8 MB/s) Selecting previously deselected package libexpat1. (Reading database ... 14271 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_i386.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1ubuntu2_i386.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2ubuntu1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2ubuntu1_i386.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1ubuntu1_i386.deb) ... Selecting previously deselected package libxdmcp6. 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Selecting previously deselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-1ubuntu3_i386.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-1ubuntu2) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-1) ... Setting up fontconfig-config (2.8.0-2.2ubuntu1) ... Setting up libfontconfig1 (2.8.0-2.2ubuntu1) ... Setting up libxau6 (1:1.0.6-1ubuntu1) ... Setting up libxdmcp6 (1:1.1.0-1ubuntu1) ... Setting up libxcb1 (1.7-2ubuntu2) ... Setting up libx11-data (2:1.4.2-1ubuntu3) ... Setting up libx11-6 (2:1.4.2-1ubuntu3) ... Setting up libxext6 (2:1.2.0-2ubuntu1) ... Setting up libxrender1 (1:0.9.6-1ubuntu1) ... Setting up libice6 (2:1.0.7-1ubuntu1) ... Setting up x11proto-core-dev (7.0.21-2) ... Setting up libice-dev (2:1.0.7-1ubuntu1) ... Setting up libsm6 (2:1.2.0-1ubuntu1) ... Setting up libxft2 (2.2.0-2ubuntu2) ... Setting up libxp6 (1:1.0.1-1) ... Setting up libxau-dev (1:1.0.6-1ubuntu1) ... Setting up libxdmcp-dev (1:1.1.0-1ubuntu1) ... Setting up x11proto-input-dev (2.0.1-1ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-1) ... Setting up xtrans-dev (1.2.6-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.7-2ubuntu2) ... Setting up libx11-dev (2:1.4.2-1ubuntu3) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.1.99.0~git20110111.9df8b776-0ubuntu2) ... Setting up libxext-dev (2:1.2.0-2ubuntu1) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.0.9-1ubuntu1) ... Setting up libmagic1 (5.04-5ubuntu2) ... Setting up file (5.04-5ubuntu2) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-5) ... Setting up libpipeline1 (1.2.0-1) ... Setting up libxml2 (2.7.8.dfsg-2) ... Setting up man-db (2.6.0.2-1) ... Building database of manual pages ... Setting up libarchive1 (2.8.4-1) ... Setting up libcurl3 (7.21.3-1ubuntu1) ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu3) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.4+dfsg.1-2ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.4+dfsg.1-2ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.1.6ubuntu2) ... Setting up dpatch (2.0.31) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libsm-dev (2:1.2.0-1ubuntu1) ... Setting up libxt-dev (1:1.0.9-1ubuntu1) ... Setting up x11proto-render-dev (2:0.11.1-1) ... Setting up libxrender-dev (1:0.9.6-1ubuntu1) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-1ubuntu2) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.8.0-2.2ubuntu1) ... Setting up libxft-dev (2.2.0-2ubuntu2) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1) ... Setting up libfftw3-dev (3.2.2-1) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-7) ... Setting up libxml2-dev (2.7.8.dfsg-2) ... Setting up openmpi-common (1.4.3-1ubuntu3) ... Setting up libibverbs1 (1.1.3-2ubuntu1) ... Setting up libibverbs-dev (1.1.3-2ubuntu1) ... Setting up libmpich2-3 (1.4~rc2-2) ... Setting up libmpich2-dev (1.4~rc2-2) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-1ubuntu3) ... Setting up libopenmpi-dev (1.4.3-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-2ubuntu1 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu8 gcc-4.6_4.6.0-7ubuntu1 g++-4.6_4.6.0-7ubuntu1 binutils_2.21.51.20110421-6ubuntu1 libstdc++6-4.6-dev_4.6.0-7ubuntu1 libstdc++6_4.6.0-7ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Mon Apr 25 21:36:46 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.4-2.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.4 dpkg-source: info: unpacking gromacs_4.5.4.orig.tar.gz dpkg-source: info: applying gromacs_4.5.4-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.4-2 dpkg-source --before-build gromacs-4.5.4 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 30_git_release-4.5-patches not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 30_git_release-4.5-patches to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j2 -C build/basic make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[2]: 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src/tools/CMakeFiles/gmxana.dir/gmx_spatial.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_tune_pme.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 81%] Built target gmxpreprocess [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_disre.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dist.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dyndom.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_enemat.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_energy.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_lie.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_filter.c.o [ 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src/tools/CMakeFiles/gmxana.dir/gmx_rama.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 83%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rdf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 83%] Built target g_luck [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rms.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rmsf.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rotacf.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_saltbr.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sas.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_select.c.o [ 84%] Building C 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Building C object src/tools/CMakeFiles/gmxana.dir/gmx_nmtraj.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjconv.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjcat.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o Linking C executable g_x2top Linking C shared library libgmxana.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o Linking C executable gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable gmxcheck Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Linking C executable grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target grompp [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o Linking C executable mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf make[3]: Leaving directory 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`/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o Linking C executable g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o Linking C executable g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Linking C executable g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Linking C executable g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Linking C executable g_confrms Linking C executable g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Linking C executable g_current Linking C executable g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_densmap Linking C executable g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih Linking C executable g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre Linking C executable g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_dyndom Linking C executable g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Linking C executable g_energy Linking C executable g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Scanning dependencies of target g_h2order Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_gyrate Linking C executable g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_helixorient [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Linking C executable g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_options Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_pme_error [ 95%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Scanning dependencies of target g_potential Built target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_potential Linking C executable g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_potential [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rama Built target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rama Linking C executable g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Scanning dependencies of target g_rms Built target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rms Linking C executable g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rmsdist Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rmsf Linking C executable g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_rmsf Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_rotmat Linking C executable g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Scanning dependencies of target g_sas Built target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Scanning dependencies of target g_select Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_sas Linking C executable g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sgangle Linking C executable g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o [ 96%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial Linking C executable g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sigeps [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_spol Linking C executable g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_traj Linking C executable g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_vanhove Linking C executable g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wham Linking C executable g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Linking C executable genbox Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable genion Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genrestr Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Scanning dependencies of target make_ndx Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat Linking C executable make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o [ 99%] Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o Linking C executable trjorder Linking C executable trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjorder make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target trjconv [100%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' /usr/bin/make -j2 -C build/basic-dp make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/replace.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_system_xdr.c.o [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_asc.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/shift_util.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/string2.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrjac.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_rw.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_bin.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/names.c.o [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pargs.c.o [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/statutil.c.o [ 2%] Building 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src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 80%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_kinetics.c.o [ 80%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_spatial.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_tune_pme.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 81%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 81%] Built target gmxpreprocess [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_disre.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dist.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dyndom.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_enemat.c.o [ 81%] Building C object 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src/tools/CMakeFiles/gmxana.dir/gmx_polystat.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_potential.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rama.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rdf.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rms.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rmsf.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rotacf.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_saltbr.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sas.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_select.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rmsdist.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rotmat.c.o [ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sgangle.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sorient.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_spol.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_tcaf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 85%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 85%] Built target g_luck [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_traj.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_velacc.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_helixorient.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_clustsize.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_mdmat.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wham.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/correl.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sham.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_nmtraj.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjconv.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjcat.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o Linking C shared library libgmxana_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o Linking C executable g_x2top_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o Linking C executable gmxcheck_d Linking C executable gmxdump_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Linking C executable grompp_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target grompp [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 90%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o Linking C executable mdrun_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable tpbconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable do_dssp_d Linking C executable pdb2gmx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o [ 90%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable editconf_d make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze_d Linking C executable g_anadock_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o [ 90%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_angle_d Linking C executable g_bar_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target g_angle Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bond_d Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_chi_d Linking C executable g_cluster_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_cluster Scanning dependencies of target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Scanning dependencies of target g_confrms Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize_d Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar_d Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Built target g_current Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Linking C executable g_density_d Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dielectric_d Linking C executable g_dih_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Scanning dependencies of target g_dipoles Built target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_dipoles_d Linking C executable g_disre_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Scanning dependencies of target g_dyndom Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dist_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_enemat [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat_d Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Scanning dependencies of target g_filter Built target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_gyrate_d Linking C executable g_filter_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Built target g_gyrate Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o [ 93%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_h2order_d Linking C executable g_hbond_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Built target g_hbond Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helix_d Linking C executable g_helixorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helixorient Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o [ 94%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_kinetics_d Linking C executable g_lie_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Scanning dependencies of target g_membed Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_mdmat_d Linking C executable g_membed_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_membed [ 94%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Linking C executable g_mindist_d Linking C executable g_morph_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_msd_d Linking C executable g_nmeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_nmens_d [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmtraj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_options_d Linking C executable g_order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_order Scanning dependencies of target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o [ 95%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_pme_error_d Linking C executable g_polystat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_polystat Scanning dependencies of target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o [ 95%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_potential_d Linking C executable g_principal_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rama_d Linking C executable g_rdf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_rama Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Linking C executable g_rms_d Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rmsdist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Linking C executable g_rmsf_d Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rotacf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Linking C executable g_rotmat_d Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_saltbr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Scanning dependencies of target g_select Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_sas_d Linking C executable g_select_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sgangle_d Linking C executable g_sham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o [ 96%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_spol [ 96%] Built target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_spol_d Linking C executable g_tcaf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_traj_d Linking C executable g_tune_pme_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o [ 97%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_vanhove_d Linking C executable g_velacc_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wham_d Linking C executable g_wheel_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o make[3]: Leaving directory 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Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable genion_d Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target trjcat make[3]: Leaving directory 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without a cast [enabled by default] [ 92%] Building C object src/mdlib/CMakeFiles/md.dir/iteratedconstraints.c.o [ 92%] Building C object src/mdlib/CMakeFiles/md.dir/md_support.c.o [ 92%] Building C object src/mdlib/CMakeFiles/md.dir/nlistheuristics.c.o Linking C shared library libmd_mpi_d.mpich.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 93%] [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 93%] Building C object 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object src/mdlib/CMakeFiles/md.dir/edsam.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/ebin.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/mvxvf.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/rf_util.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/gmx_fft_mkl.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/pull.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/pme_pp.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/domdec.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/groupcoord.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/gmx_qhop_xml.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/domdec_setup.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/ns.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/mdebin.c.o [ 91%] Building C object src/mdlib/CMakeFiles/md.dir/qm_gamess.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/mdatom.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/ewald.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/pme.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/iteratedconstraints.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/md_support.c.o [ 93%] Building C object src/mdlib/CMakeFiles/md.dir/nlistheuristics.c.o Linking C shared library libmd_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 93%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 93%] [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_bond_atomtype.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/h_db.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hackblock.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hizzie.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/nm2type.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pdb2top.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pgutil.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readir.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readpull.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/resall.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/sorting.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian touch build-openmpi /usr/bin/fakeroot debian/rules binary dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 60%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 63%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 65%] Built target ngmx [ 73%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 77%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 77%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 78%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 78%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxana [ 89%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] [ 90%] Built target tpbconv Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_analyze [ 90%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_bar Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_chi [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] [ 91%] Built target g_clustsize Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] [ 91%] Built target g_covar Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_dih Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_filter Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_lie [ 94%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_mindist [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] [ 94%] Built target g_msd Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_order [ 95%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_polystat Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_principal [ 95%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_rdf Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_rmsdist Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_saltbr Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sorient [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wheel [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target genion [ 97%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target make_edi [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 99%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/links.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ss.map -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Installing: 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-- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Installing: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/tpbconv -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/pdb2gmx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_protonate -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_luck -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxdump -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_x2top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxcheck -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/do_dssp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/editconf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/eneconv -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genbox -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genconf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genrestr -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmtraj -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mk_angndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjcat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjconv -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjorder -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wheel -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xpm2ps -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genion -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anadock -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_edi -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_analyze -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anaeig -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_angle -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bond -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bundle -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_chi -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_cluster -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_confrms -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_covar -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_current -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_density -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_densmap -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dih -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dielectric -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helixorient -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_principal -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dipoles -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_disre -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dyndom -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_enemat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_energy -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_lie -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_filter -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_gyrate -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_h2order -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_hbond -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helix -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mindist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_msd -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_morph -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmeig -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmens -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_order -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_kinetics -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_polystat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_potential -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rama -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rdf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rms -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotacf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_saltbr -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sas -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_select -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sgangle -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sham -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sorient -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spol -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spatial -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tcaf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_traj -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tune_pme -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 60%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 63%] Built target g_xrama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 65%] Built target ngmx [ 73%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 77%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 77%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target gmxana make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target mdrun Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target do_dssp Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target eneconv [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_angle [ 90%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_chi [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_covar [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Built target g_gyrate Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_order Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsdist [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_rotacf Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_saltbr [ 96%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Built target g_select Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Built target g_wham Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] [ 97%] Built target genbox Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Built target mk_angndx [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target trjorder [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG43a1.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexwat-ferguson.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/residuetypes.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ca-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffgmx2.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ps.m2p -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/elements.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ethanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/random.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/bonds.dlg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/electroneg.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spce.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip4p.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/dgsolv.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG53a5.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-12.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffoplsaa-n.tst -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/sw.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/gb.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnabonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tips3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/cmap.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/surface.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/atomtypes.atp -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_bond.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_dielectric.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/eneconv.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_clustsize.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_xrama.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_cluster.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_wham.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_mindist.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_anadock.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_membed.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_nmeig.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_dist.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_nmtraj.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_morph.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_sorient.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_vanhove.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/ngmx.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_enemat.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/genbox.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/gmxcheck.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_sas.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_spol.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_traj.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_bundle.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_helixorient.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rotacf.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_anaeig.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_principal.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_lie.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/mdrun.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/genrestr.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_nmens.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_energy.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_helix.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_velacc.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/trjorder.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_covar.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/make_ndx.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/genconf.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_polystat.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/genion.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rmsf.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_dipoles.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rama.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_select.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rms.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rmsdist.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_densorder.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_hydorder.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_options.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_pme_error.1 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_luck.1 debian/man/g_kinetics.1 debian/man/g_options.1 for manpage in /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d # three lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) # - binary-without-manpage: shipped in gromacs-data instead. dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j2 -C build/openmpi install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 93%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' /usr/bin/make -j2 -C build/openmpi-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 93%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/include /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs dh_testdir dh_testroot dh_installchangelogs -i dh_installdocs -pgromacs-data dh_compress -i dh_fixperms -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-data/DEBIAN/control, package gromacs-data, directory debian/gromacs-data pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-data/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-data' in `../gromacs-data_4.5.4-2_all.deb'. dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring gromacs-openmpi is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records Skipping arch: any to arch: all dependency to gromacs-data dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.4-2_i386.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.4-2_i386.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.4-2_i386.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-openmpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-openmpi' in `../gromacs-openmpi_4.5.4-2_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../gromacs_4.5.4-2_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.4 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110522-1538 chroot-autobuild/build/buildd/gromacs-data_4.5.4-2_all.deb: new debian package, version 2.0. size 1861454 bytes: control archive= 17130 bytes. 1124 bytes, 28 lines control 60630 bytes, 783 lines md5sums Package: gromacs-data Source: gromacs Version: 4.5.4-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 10524 Recommends: gromacs Suggests: tcsh | c-shell Conflicts: gromacs-doc Breaks: gromacs (<< 3.3.3-1) Replaces: gromacs-doc Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, data and documentation GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains architecture-independent topology and force field data, documentation, man pages, and example files. chroot-autobuild/build/buildd/gromacs_4.5.4-2_i386.deb: new debian package, version 2.0. size 5436784 bytes: control archive= 6160 bytes. 1194 bytes, 26 lines control 10467 bytes, 200 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.4-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 13828 Depends: gromacs-data (= 4.5.4-2), libc6 (>= 2.11), libfftw3-3, libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.4-2_i386.deb: new debian package, version 2.0. size 287048 bytes: control archive= 7284 bytes. 1274 bytes, 27 lines control 14443 bytes, 217 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.4-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1876 Depends: gromacs (= 4.5.4-2), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.4-2) | gromacs-openmpi (= 4.5.4-2), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_i386.deb: new debian package, version 2.0. size 3549670 bytes: control archive= 2232 bytes. 1200 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.4-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8292 Depends: libc6 (>= 2.11), libfftw3-3, libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_i386.deb: new debian package, version 2.0. size 3550344 bytes: control archive= 2267 bytes. 1241 bytes, 28 lines control 932 bytes, 13 lines md5sums 1820 bytes, 58 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh 246 bytes, 6 lines shlibs Package: gromacs-openmpi Source: gromacs Version: 4.5.4-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8296 Depends: libc6 (>= 2.11), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. 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./usr/share/man/man1/g_sas_d.1.gz -> g_sas.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_analyze_d.1.gz -> g_analyze.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rdf_d.1.gz -> g_rdf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_bond_d.1.gz -> g_bond.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_chi_d.1.gz -> g_chi.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/trjorder_d.1.gz -> trjorder.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_cluster_d.1.gz -> g_cluster.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_select_d.1.gz -> g_select.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_confrms_d.1.gz -> g_confrms.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/ngmx_d.1.gz -> ngmx.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_current_d.1.gz -> g_current.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_density_d.1.gz -> g_density.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_densmap_d.1.gz -> g_densmap.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_wheel_d.1.gz -> g_wheel.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/tpbconv_d.1.gz -> tpbconv.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_lie_d.1.gz -> g_lie.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_dipoles_d.1.gz -> g_dipoles.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_dist_d.1.gz -> g_dist.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_dyndom_d.1.gz -> g_dyndom.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_energy_d.1.gz -> g_energy.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_gyrate_d.1.gz -> g_gyrate.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_h2order_d.1.gz -> g_h2order.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_msd_d.1.gz -> g_msd.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_helixorient_d.1.gz -> g_helixorient.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_options_d.1.gz -> g_options.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_kinetics_d.1.gz -> g_kinetics.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_luck_d.1.gz -> g_luck.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_membed_d.1.gz -> g_membed.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_mindist_d.1.gz -> g_mindist.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rama_d.1.gz -> g_rama.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_nmeig_d.1.gz -> g_nmeig.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_nmens_d.1.gz -> g_nmens.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_nmtraj_d.1.gz -> g_nmtraj.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rms_d.1.gz -> g_rms.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/mdrun_d.1.gz -> mdrun.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_tcaf_d.1.gz -> g_tcaf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_x2top_d.1.gz -> g_x2top.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_bundle_d.1.gz -> g_bundle.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_angle_d.1.gz -> g_angle.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_morph_d.1.gz -> g_morph.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_helix_d.1.gz -> g_helix.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/trjconv_d.1.gz -> trjconv.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rmsdist_d.1.gz -> g_rmsdist.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rmsf_d.1.gz -> g_rmsf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rotmat_d.1.gz -> g_rotmat.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/trjcat_d.1.gz -> trjcat.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_sham_d.1.gz -> g_sham.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_sigeps_d.1.gz -> g_sigeps.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_sgangle_d.1.gz -> g_sgangle.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_sorient_d.1.gz -> g_sorient.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_spatial_d.1.gz -> g_spatial.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_spol_d.1.gz -> g_spol.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_tune_pme_d.1.gz -> g_tune_pme.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_vanhove_d.1.gz -> g_vanhove.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_velacc_d.1.gz -> g_velacc.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_hbond_d.1.gz -> g_hbond.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_principal_d.1.gz -> g_principal.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_xrama_d.1.gz -> g_xrama.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/genbox_d.1.gz -> genbox.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/genion_d.1.gz -> genion.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/genrestr_d.1.gz -> genrestr.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/gmxdump_d.1.gz -> gmxdump.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/grompp_d.1.gz -> grompp.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/make_edi_d.1.gz -> make_edi.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_anaeig_d.1.gz -> g_anaeig.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/mk_angndx_d.1.gz -> mk_angndx.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/gmxcheck_d.1.gz -> gmxcheck.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/pdb2gmx_d.1.gz -> pdb2gmx.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_potential_d.1.gz -> g_potential.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_dielectric_d.1.gz -> g_dielectric.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_order_d.1.gz -> g_order.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/genconf_d.1.gz -> genconf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_wham_d.1.gz -> g_wham.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_traj_d.1.gz -> g_traj.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_densorder_d.1.gz -> g_densorder.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_covar_d.1.gz -> g_covar.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_protonate_d.1.gz -> g_protonate.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_hydorder_d.1.gz -> g_hydorder.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/editconf_d.1.gz -> editconf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_rotacf_d.1.gz -> g_rotacf.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_polystat_d.1.gz -> g_polystat.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_filter_d.1.gz -> g_filter.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_enemat_d.1.gz -> g_enemat.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_clustsize_d.1.gz -> g_clustsize.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_pme_error_d.1.gz -> g_pme_error.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/xpm2ps_d.1.gz -> xpm2ps.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/eneconv_d.1.gz -> eneconv.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_saltbr_d.1.gz -> g_saltbr.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_disre_d.1.gz -> g_disre.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/g_mdmat_d.1.gz -> g_mdmat.1.gz lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/make_ndx_d.1.gz -> make_ndx.1.gz chroot-autobuild/build/buildd/gromacs_4.5.4-2_i386.deb: drwxr-xr-x root/root 0 2011-05-22 15:37 ./ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:36 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 3993 2011-05-22 15:14 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 203 2010-09-29 11:35 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lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libmd_mpi_d.mpich.so -> libmd_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libgmx_mpi.openmpi.so -> libgmx_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libgmx_mpi_d.openmpi.so -> libgmx_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi.openmpi.so -> libgmxpreprocess_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so -> libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libmd_mpi.openmpi.so -> libmd_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/lib/libmd_mpi_d.openmpi.so -> libmd_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:38 ./usr/share/doc/gromacs-dev/changelog.Debian.gz -> ../gromacs/changelog.Debian.gz chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_i386.deb: drwxr-xr-x root/root 0 2011-05-22 15:37 ./ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/bin/ -rwxr-xr-x root/root 166272 2011-05-22 15:37 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 158096 2011-05-22 15:37 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/man/man1/ -rw-r--r-- root/root 6217 2011-05-22 15:37 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-05-22 15:14 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 1427 2011-05-22 15:30 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:14 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 2257 2011-05-22 15:38 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/lib/ -rw-r--r-- root/root 2532700 2011-05-22 15:37 ./usr/lib/libgmx_mpi.mpich.so.6 -rw-r--r-- root/root 957200 2011-05-22 15:37 ./usr/lib/libmd_mpi.mpich.so.6 -rw-r--r-- root/root 448592 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi.mpich.so.6 -rw-r--r-- root/root 2745660 2011-05-22 15:37 ./usr/lib/libgmx_mpi_d.mpich.so.6 -rw-r--r-- root/root 912112 2011-05-22 15:37 ./usr/lib/libmd_mpi_d.mpich.so.6 -rw-r--r-- root/root 440448 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_i386.deb: drwxr-xr-x root/root 0 2011-05-22 15:37 ./ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/bin/ -rwxr-xr-x root/root 166272 2011-05-22 15:37 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 158096 2011-05-22 15:37 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/man/man1/ -rw-r--r-- root/root 6218 2011-05-22 15:37 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2011-05-22 15:14 ./usr/share/lintian/overrides/gromacs-openmpi drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/share/doc/gromacs-openmpi/ -rw-r--r-- root/root 1435 2011-05-22 15:36 ./usr/share/doc/gromacs-openmpi/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:14 ./usr/share/doc/gromacs-openmpi/copyright -rw-r--r-- root/root 2259 2011-05-22 15:38 ./usr/share/doc/gromacs-openmpi/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:37 ./usr/lib/ -rw-r--r-- root/root 2532700 2011-05-22 15:37 ./usr/lib/libgmx_mpi.openmpi.so.6 -rw-r--r-- root/root 957200 2011-05-22 15:37 ./usr/lib/libmd_mpi.openmpi.so.6 -rw-r--r-- root/root 448592 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -rw-r--r-- root/root 2745660 2011-05-22 15:37 ./usr/lib/libgmx_mpi_d.openmpi.so.6 -rw-r--r-- root/root 916208 2011-05-22 15:37 ./usr/lib/libmd_mpi_d.openmpi.so.6 -rw-r--r-- root/root 440448 2011-05-22 15:37 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:37 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_4.5.4-2_i386.changes: Format: 1.8 Date: Mon, 25 Apr 2011 13:47:00 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: all i386 Version: 4.5.4-2 Distribution: oneiric Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.4-2) unstable; urgency=low . * control: remove obsolete Build-Depends and Suggests on libice-dev, libsm-dev, libxext-dev, libxp-dev, libxt-dev. Update Standards-Version to 3.9.2. * patches/30_git_release-4.5-patches.dpatch: Routine update from upstream git, to commit 873563ef of 22 April 2011. * patches/31_manpages.dpatch: Various minor spelling and header fixes. * lintian-overrides.gromacs: Remove checks no longer needed, per #120323. * rules: Switch to using dh_lintian. Checksums-Sha1: 95b3b1705639cd73e1bce64a8748f9a6b03f72e9 1861454 gromacs-data_4.5.4-2_all.deb 93cf314a6af335196214c3fbc88677765008fd74 5436784 gromacs_4.5.4-2_i386.deb 1e2df45fc28719da266c32e73a56408ec747bf76 287048 gromacs-dev_4.5.4-2_i386.deb bf2e47060588ed6b825f647372f76045a421996e 3549670 gromacs-mpich_4.5.4-2_i386.deb b10062998eadf867b7c0f229ee306a5babebd463 3550344 gromacs-openmpi_4.5.4-2_i386.deb Checksums-Sha256: 4d90b966f0289d70d3807f32756e0af60bf00a4174ec95209d522b5c3c876c49 1861454 gromacs-data_4.5.4-2_all.deb 5431e1199c1df08263f91808c4056558cad00120c2ab262554d51191b257a5bf 5436784 gromacs_4.5.4-2_i386.deb b018e0a9189841fd1ec7d89f33782b3068042de8923d4fd12d735ba71b47b93a 287048 gromacs-dev_4.5.4-2_i386.deb 06a9efbf732aabeda4b556aa7550e0c9d154f434498122bd5b81f49eca3777e1 3549670 gromacs-mpich_4.5.4-2_i386.deb b0b5e44fde3fc4f643aa381423b2d355f21ff0e1a94fe8aecc5ef1983f1ea5c4 3550344 gromacs-openmpi_4.5.4-2_i386.deb Files: c457b50701e7bcd0e7e74abe0c1020a3 1861454 science extra gromacs-data_4.5.4-2_all.deb 5603a4b94e9a537b8c69a0ba354e0aba 5436784 science extra gromacs_4.5.4-2_i386.deb 837fb71a089778d2ff96dbe20a9d3524 287048 devel extra gromacs-dev_4.5.4-2_i386.deb c47a2609c1c47a070a1cec61c4725469 3549670 science extra gromacs-mpich_4.5.4-2_i386.deb 091fac39c09e93354310038c51e691a0 3550344 science extra gromacs-openmpi_4.5.4-2_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.4 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libibverbs-dev libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libibverbs1 libfftw3-dev x11-common libx11-dev libcroco3 libopenmpi1.3 x11proto-print-dev libxt-dev libpopt0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils openmpi-common libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libtorque2 x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libopenmpi-dev libnuma1 libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev libxrender-dev gettext-base libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 20436 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libopenmpi-dev ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing libibverbs-dev ... Removing gettext ... Removing file ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libxt-dev ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing openmpi-common ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing pkg-config ... Removing libxmlrpc-core-c3-0 ... Purging configuration files for libxmlrpc-core-c3-0 ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libx11-dev ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... Purging configuration files for x11-common ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110522-1538 Build needed 00:24:19, 288624k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '2fa896b636f90864438c084fc6f0be6c578a5646'] Scanning for processes to kill in build /home/buildd/build-2fa896b636f90864438c084fc6f0be6c578a5646/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '2fa896b636f90864438c084fc6f0be6c578a5646'] Unmounting chroot for build 2fa896b636f90864438c084fc6f0be6c578a5646... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '2fa896b636f90864438c084fc6f0be6c578a5646'] Removing build 2fa896b636f90864438c084fc6f0be6c578a5646