RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '9916ab67f02d428dffd10fc24937d2da9c2524e1', '/home/buildd/filecache-default/c589d7021c53b43ad71c04d245b20606f8f2b0a1'] Synching the system clock with the buildd NTP service... 22 May 15:25:27 ntpdate[11945]: adjust time server 10.211.37.1 offset 0.000105 sec Unpacking chroot for build 9916ab67f02d428dffd10fc24937d2da9c2524e1 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '9916ab67f02d428dffd10fc24937d2da9c2524e1'] Mounting chroot for build 9916ab67f02d428dffd10fc24937d2da9c2524e1 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '9916ab67f02d428dffd10fc24937d2da9c2524e1', 'deb http://ftpmaster.internal/ubuntu oneiric main universe'] Overriding sources.list in build-9916ab67f02d428dffd10fc24937d2da9c2524e1 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '9916ab67f02d428dffd10fc24937d2da9c2524e1', 'powerpc'] Updating debian chroot for build 9916ab67f02d428dffd10fc24937d2da9c2524e1 Ign http://ftpmaster.internal oneiric InRelease Get:1 http://ftpmaster.internal oneiric Release.gpg [198 B] Get:2 http://ftpmaster.internal oneiric Release [39.8 kB] Get:3 http://ftpmaster.internal oneiric/main powerpc Packages [1586 kB] Get:4 http://ftpmaster.internal oneiric/universe powerpc Packages [6083 kB] Ign http://ftpmaster.internal oneiric/main TranslationIndex Ign http://ftpmaster.internal oneiric/universe TranslationIndex Ign http://ftpmaster.internal oneiric/main Translation-en Ign http://ftpmaster.internal oneiric/universe Translation-en Fetched 7709 kB in 8s (923 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: bash binutils cpp-4.6 g++-4.6 gcc-4.5-base gcc-4.6 gcc-4.6-base libdbus-1-3 libgcc1 libgcrypt11 libgnutls26 libgomp1 libgpg-error0 libldap-2.4-2 libpng12-0 libreadline6 libstdc++6 libstdc++6-4.6-dev libtasn1-3 libudev0 linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler python2.7-minimal readline-common udev 27 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 25.2 MB of archives. After this operation, 1364 kB of additional disk space will be used. WARNING: The following packages cannot be authenticated! bash libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 binutils libdbus-1-3 libpng12-0 libudev0 libgpg-error0 libgcrypt11 libtasn1-3 libgnutls26 readline-common libreadline6 python2.7-minimal udev libldap-2.4-2 gcc-4.5-base linux-libc-dev patch pkg-create-dbgsym pkgbinarymangler Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main bash powerpc 4.2-0ubuntu4 [573 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libgomp1 powerpc 4.6.0-7ubuntu1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6-base powerpc 4.6.0-7ubuntu1 [14.8 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6 powerpc 4.6.0-7ubuntu1 [371 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main cpp-4.6 powerpc 4.6.0-7ubuntu1 [4569 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libstdc++6-4.6-dev powerpc 4.6.0-7ubuntu1 [1645 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main g++-4.6 powerpc 4.6.0-7ubuntu1 [6071 kB] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.6 powerpc 4.6.0-7ubuntu1 [5160 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libgcc1 powerpc 1:4.6.0-7ubuntu1 [42.8 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main binutils powerpc 2.21.51.20110421-6ubuntu1 [2471 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libdbus-1-3 powerpc 1.4.8-3ubuntu1 [129 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libpng12-0 powerpc 1.2.44-2ubuntu1 [128 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libudev0 powerpc 170-0ubuntu1 [28.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main libgpg-error0 powerpc 1.10-0.3ubuntu1 [14.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libgcrypt11 powerpc 1.4.6-5ubuntu1 [281 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main libtasn1-3 powerpc 2.9-3ubuntu1 [42.6 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libgnutls26 powerpc 2.10.5-1ubuntu2 [392 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main readline-common all 6.2-2 [49.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libreadline6 powerpc 6.2-2 [124 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main python2.7-minimal powerpc 2.7.1-9 [1691 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main udev powerpc 170-0ubuntu1 [305 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libldap-2.4-2 powerpc 2.4.25-1ubuntu1 [174 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main gcc-4.5-base powerpc 4.5.3-1ubuntu2 [12.4 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main linux-libc-dev powerpc 2.6.39-3.9 [776 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main patch powerpc 2.6.1-2 [88.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-create-dbgsym all 0.49 [8300 B] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main pkgbinarymangler all 98 [25.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 25.2 MB in 1s (18.8 MB/s) (Reading database ... 14211 files and directories currently installed.) Preparing to replace bash 4.2-0ubuntu3 (using .../bash_4.2-0ubuntu4_powerpc.deb) ... Unpacking replacement bash ... Setting up bash (4.2-0ubuntu4) ... Installing new version of config file /etc/bash.bashrc ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode. (Reading database ... 14211 files and directories currently installed.) Preparing to replace libgomp1 4.6.0-6ubuntu2 (using .../libgomp1_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.0-6ubuntu2 (using .../gcc-4.6-base_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.0-7ubuntu1) ... (Reading database ... 14211 files and directories currently installed.) Preparing to replace libstdc++6 4.6.0-6ubuntu2 (using .../libstdc++6_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14211 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.0-6ubuntu2 (using .../cpp-4.6_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.0-6ubuntu2 (using .../libstdc++6-4.6-dev_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.0-6ubuntu2 (using .../g++-4.6_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.0-6ubuntu2 (using .../gcc-4.6_4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.0-6ubuntu2 (using .../libgcc1_1%3a4.6.0-7ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14222 files and directories currently installed.) Preparing to replace binutils 2.21.51.20110421-0ubuntu5 (using .../binutils_2.21.51.20110421-6ubuntu1_powerpc.deb) ... Unpacking replacement binutils ... Preparing to replace libdbus-1-3 1.4.6-1ubuntu6 (using .../libdbus-1-3_1.4.8-3ubuntu1_powerpc.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libpng12-0 1.2.44-1ubuntu3 (using .../libpng12-0_1.2.44-2ubuntu1_powerpc.deb) ... Unpacking replacement libpng12-0 ... Preparing to replace libudev0 167-0ubuntu3 (using .../libudev0_170-0ubuntu1_powerpc.deb) ... Unpacking replacement libudev0 ... Preparing to replace libgpg-error0 1.10-0.2ubuntu1 (using .../libgpg-error0_1.10-0.3ubuntu1_powerpc.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.4.6-4ubuntu2 (using .../libgcrypt11_1.4.6-5ubuntu1_powerpc.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libtasn1-3 2.7-1ubuntu1 (using .../libtasn1-3_2.9-3ubuntu1_powerpc.deb) ... Unpacking replacement libtasn1-3 ... Preparing to replace libgnutls26 2.8.6-1ubuntu2 (using .../libgnutls26_2.10.5-1ubuntu2_powerpc.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace readline-common 6.2-1 (using .../readline-common_6.2-2_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-2) ... (Reading database ... 14222 files and directories currently installed.) Preparing to replace libreadline6 6.2-1 (using .../libreadline6_6.2-2_powerpc.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14222 files and directories currently installed.) Preparing to replace python2.7-minimal 2.7.1-5ubuntu2 (using .../python2.7-minimal_2.7.1-9_powerpc.deb) ... Unpacking replacement python2.7-minimal ... Setting up python2.7-minimal (2.7.1-9) ... (Reading database ... 14222 files and directories currently installed.) Preparing to replace udev 167-0ubuntu3 (using .../udev_170-0ubuntu1_powerpc.deb) ... Adding 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' Unpacking replacement udev ... Preparing to replace libldap-2.4-2 2.4.23-6ubuntu6 (using .../libldap-2.4-2_2.4.25-1ubuntu1_powerpc.deb) ... Unpacking replacement libldap-2.4-2 ... Preparing to replace gcc-4.5-base 4.5.2-11ubuntu2 (using .../gcc-4.5-base_4.5.3-1ubuntu2_powerpc.deb) ... Unpacking replacement gcc-4.5-base ... Preparing to replace linux-libc-dev 2.6.39-1.6 (using .../linux-libc-dev_2.6.39-3.9_powerpc.deb) ... Unpacking replacement linux-libc-dev ... Preparing to replace patch 2.6.1-1 (using .../patch_2.6.1-2_powerpc.deb) ... Unpacking replacement patch ... Preparing to replace pkg-create-dbgsym 0.48 (using .../pkg-create-dbgsym_0.49_all.deb) ... Unpacking replacement pkg-create-dbgsym ... Preparing to replace pkgbinarymangler 97 (using .../pkgbinarymangler_98_all.deb) ... Unpacking replacement pkgbinarymangler ... Setting up libgomp1 (4.6.0-7ubuntu1) ... Setting up cpp-4.6 (4.6.0-7ubuntu1) ... Setting up binutils (2.21.51.20110421-6ubuntu1) ... Setting up gcc-4.6 (4.6.0-7ubuntu1) ... Setting up libdbus-1-3 (1.4.8-3ubuntu1) ... Setting up libpng12-0 (1.2.44-2ubuntu1) ... Setting up libudev0 (170-0ubuntu1) ... Setting up libgpg-error0 (1.10-0.3ubuntu1) ... Setting up libgcrypt11 (1.4.6-5ubuntu1) ... Setting up libtasn1-3 (2.9-3ubuntu1) ... Setting up libgnutls26 (2.10.5-1ubuntu2) ... Setting up udev (170-0ubuntu1) ... Removing 'diversion of /sbin/udevadm to /sbin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up libldap-2.4-2 (2.4.25-1ubuntu1) ... Installing new version of config file /etc/ldap/ldap.conf ... Setting up gcc-4.5-base (4.5.3-1ubuntu2) ... Setting up linux-libc-dev (2.6.39-3.9) ... Setting up patch (2.6.1-2) ... Setting up pkg-create-dbgsym (0.49) ... Setting up pkgbinarymangler (98) ... Setting up libstdc++6-4.6-dev (4.6.0-7ubuntu1) ... Setting up g++-4.6 (4.6.0-7ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Processing triggers for initramfs-tools ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '9916ab67f02d428dffd10fc24937d2da9c2524e1', 'powerpc', 'oneiric', '--nolog', '--batch', '--archive=ubuntu', '--dist=oneiric', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'gromacs_4.5.4-2.dsc'] Initiating build 9916ab67f02d428dffd10fc24937d2da9c2524e1 with 2 processor cores. Automatic build of gromacs_4.5.4-2 on adare by sbuild/powerpc 1.170.5 Build started at 20110522-1526 ****************************************************************************** gromacs_4.5.4-2.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing libopenmpi-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev libopenmpi-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xtrans-dev zlib1g-dev 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 37.7 MB of archives. After this operation, 129 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 x11-common libice6 x11proto-core-dev libice-dev libsm6 libxft2 libxp6 libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base libpipeline1 libxml2 man-db libarchive1 libcurl3 libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper dpatch lesstif2 libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libnuma1 libtorque2 libxml2-dev openmpi-common libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1 powerpc 2.0.1-7ubuntu3 [136 kB] Get:2 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6 powerpc 2.4.4-1ubuntu2 [319 kB] Get:3 http://ftpmaster.internal/ubuntu/ oneiric/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ oneiric/main ttf-dejavu-core all 2.33-1 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ oneiric/main fontconfig-config all 2.8.0-2.2ubuntu1 [44.3 kB] Get:6 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1 powerpc 2.8.0-2.2ubuntu1 [123 kB] Get:7 http://ftpmaster.internal/ubuntu/ oneiric/main libxau6 powerpc 1:1.0.6-1ubuntu1 [8272 B] Get:8 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp6 powerpc 1:1.1.0-1ubuntu1 [12.6 kB] Get:9 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1 powerpc 1.7-2ubuntu2 [37.3 kB] Get:10 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-data all 2:1.4.2-1ubuntu3 [169 kB] Get:11 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-6 powerpc 2:1.4.2-1ubuntu3 [749 kB] Get:12 http://ftpmaster.internal/ubuntu/ oneiric/main libxext6 powerpc 2:1.2.0-2ubuntu1 [31.3 kB] Get:13 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender1 powerpc 1:0.9.6-1ubuntu1 [20.2 kB] Get:14 http://ftpmaster.internal/ubuntu/ oneiric/main x11-common all 1:7.6+4ubuntu3 [69.2 kB] Get:15 http://ftpmaster.internal/ubuntu/ oneiric/main libice6 powerpc 2:1.0.7-1ubuntu1 [43.7 kB] Get:16 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-core-dev all 7.0.21-2 [297 kB] Get:17 http://ftpmaster.internal/ubuntu/ oneiric/main libice-dev powerpc 2:1.0.7-1ubuntu1 [133 kB] Get:18 http://ftpmaster.internal/ubuntu/ oneiric/main libsm6 powerpc 2:1.2.0-1ubuntu1 [17.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ oneiric/main libxft2 powerpc 2.2.0-2ubuntu2 [41.5 kB] Get:20 http://ftpmaster.internal/ubuntu/ oneiric/main libxp6 powerpc 1:1.0.1-1 [16.7 kB] Get:21 http://ftpmaster.internal/ubuntu/ oneiric/main libxau-dev powerpc 1:1.0.6-1ubuntu1 [11.7 kB] Get:22 http://ftpmaster.internal/ubuntu/ oneiric/main libxdmcp-dev powerpc 1:1.1.0-1ubuntu1 [46.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-input-dev all 2.0.1-1ubuntu1 [68.5 kB] Get:24 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-kb-dev all 1.0.5-1 [25.4 kB] Get:25 http://ftpmaster.internal/ubuntu/ oneiric/main xtrans-dev all 1.2.6-1 [80.8 kB] Get:26 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0 powerpc 0.3-2 [3200 B] Get:27 http://ftpmaster.internal/ubuntu/ oneiric/main libpthread-stubs0-dev powerpc 0.3-2 [2416 B] Get:28 http://ftpmaster.internal/ubuntu/ oneiric/main libxcb1-dev powerpc 1.7-2ubuntu2 [76.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ oneiric/main libx11-dev powerpc 2:1.4.2-1ubuntu3 [3129 kB] Get:30 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:31 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-xext-dev all 7.1.99.0~git20110111.9df8b776-0ubuntu2 [254 kB] Get:32 http://ftpmaster.internal/ubuntu/ oneiric/main libxext-dev powerpc 2:1.2.0-2ubuntu1 [134 kB] Get:33 http://ftpmaster.internal/ubuntu/ oneiric/main libxp-dev powerpc 1:1.0.1-1 [82.7 kB] Get:34 http://ftpmaster.internal/ubuntu/ oneiric/main libxt6 powerpc 1:1.0.9-1ubuntu1 [171 kB] Get:35 http://ftpmaster.internal/ubuntu/ oneiric/main libmagic1 powerpc 5.04-5ubuntu2 [212 kB] Get:36 http://ftpmaster.internal/ubuntu/ oneiric/main file powerpc 5.04-5ubuntu2 [22.6 kB] Get:37 http://ftpmaster.internal/ubuntu/ oneiric/main libpopt0 powerpc 1.16-1 [36.4 kB] Get:38 http://ftpmaster.internal/ubuntu/ oneiric/main bsdmainutils powerpc 8.2.2ubuntu1 [197 kB] Get:39 http://ftpmaster.internal/ubuntu/ oneiric/main gettext-base powerpc 0.18.1.1-3ubuntu1 [57.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ oneiric/main groff-base powerpc 1.21-5 [1056 kB] Get:41 http://ftpmaster.internal/ubuntu/ oneiric/main libpipeline1 powerpc 1.2.0-1 [25.7 kB] Get:42 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2 powerpc 2.7.8.dfsg-2 [631 kB] Get:43 http://ftpmaster.internal/ubuntu/ oneiric/main man-db powerpc 2.6.0.2-1 [720 kB] Get:44 http://ftpmaster.internal/ubuntu/ oneiric/main libarchive1 powerpc 2.8.4-1 [165 kB] Get:45 http://ftpmaster.internal/ubuntu/ oneiric/main libcurl3 powerpc 7.21.3-1ubuntu1 [232 kB] Get:46 http://ftpmaster.internal/ubuntu/ oneiric/main libxmlrpc-core-c3-0 powerpc 1.16.32-0ubuntu3 [109 kB] Get:47 http://ftpmaster.internal/ubuntu/ oneiric/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ oneiric/main cmake-data all 2.8.4+dfsg.1-2ubuntu1 [649 kB] Get:49 http://ftpmaster.internal/ubuntu/ oneiric/main cmake powerpc 2.8.4+dfsg.1-2ubuntu1 [4213 kB] Get:50 http://ftpmaster.internal/ubuntu/ oneiric/main html2text powerpc 1.3.2a-15 [106 kB] Get:51 http://ftpmaster.internal/ubuntu/ oneiric/main libcroco3 powerpc 0.6.2-1 [98.4 kB] Get:52 http://ftpmaster.internal/ubuntu/ oneiric/main libunistring0 powerpc 0.9.3-4 [410 kB] Get:53 http://ftpmaster.internal/ubuntu/ oneiric/main gettext powerpc 0.18.1.1-3ubuntu1 [1247 kB] Get:54 http://ftpmaster.internal/ubuntu/ oneiric/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ oneiric/main po-debconf all 1.0.16+nmu1 [212 kB] Get:56 http://ftpmaster.internal/ubuntu/ oneiric/main debhelper all 8.1.6ubuntu2 [485 kB] Get:57 http://ftpmaster.internal/ubuntu/ oneiric/main dpatch all 2.0.31 [88.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2 powerpc 1:0.95.2-1 [673 kB] Get:59 http://ftpmaster.internal/ubuntu/ oneiric/main libsm-dev powerpc 2:1.2.0-1ubuntu1 [89.8 kB] Get:60 http://ftpmaster.internal/ubuntu/ oneiric/main libxt-dev powerpc 1:1.0.9-1ubuntu1 [485 kB] Get:61 http://ftpmaster.internal/ubuntu/ oneiric/main x11proto-render-dev all 2:0.11.1-1 [18.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ oneiric/main libxrender-dev powerpc 1:0.9.6-1ubuntu1 [28.6 kB] Get:63 http://ftpmaster.internal/ubuntu/ oneiric/main libexpat1-dev powerpc 2.0.1-7ubuntu3 [269 kB] Get:64 http://ftpmaster.internal/ubuntu/ oneiric/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3ubuntu3 [163 kB] Get:65 http://ftpmaster.internal/ubuntu/ oneiric/main libfreetype6-dev powerpc 2.4.4-1ubuntu2 [754 kB] Get:66 http://ftpmaster.internal/ubuntu/ oneiric/main pkg-config powerpc 0.26-1 [39.9 kB] Get:67 http://ftpmaster.internal/ubuntu/ oneiric/main libfontconfig1-dev powerpc 2.8.0-2.2ubuntu1 [656 kB] Get:68 http://ftpmaster.internal/ubuntu/ oneiric/main libxft-dev powerpc 2.2.0-2ubuntu2 [54.8 kB] Get:69 http://ftpmaster.internal/ubuntu/ oneiric/universe lesstif2-dev powerpc 1:0.95.2-1 [951 kB] Get:70 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr0 powerpc 0.8.2-15ubuntu1 [20.2 kB] Get:71 http://ftpmaster.internal/ubuntu/ oneiric/universe libcr-dev powerpc 0.8.2-15ubuntu1 [29.4 kB] Get:72 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-3 powerpc 3.2.2-1 [2346 kB] Get:73 http://ftpmaster.internal/ubuntu/ oneiric/main libfftw3-dev powerpc 3.2.2-1 [2791 kB] Get:74 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0ldbl powerpc 1.15+dfsg-1 [1034 kB] Get:75 http://ftpmaster.internal/ubuntu/ oneiric/main libgsl0-dev powerpc 1.15+dfsg-1 [1266 kB] Get:76 http://ftpmaster.internal/ubuntu/ oneiric/universe libnuma1 powerpc 2.0.5-1 [20.2 kB] Get:77 http://ftpmaster.internal/ubuntu/ oneiric/universe libtorque2 powerpc 2.4.8+dfsg-7 [116 kB] Get:78 http://ftpmaster.internal/ubuntu/ oneiric/main libxml2-dev powerpc 2.7.8.dfsg-2 [839 kB] Get:79 http://ftpmaster.internal/ubuntu/ oneiric/universe openmpi-common all 1.4.3-1ubuntu3 [87.0 kB] Get:80 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs1 powerpc 1.1.3-2ubuntu1 [34.2 kB] Get:81 http://ftpmaster.internal/ubuntu/ oneiric/main libibverbs-dev powerpc 1.1.3-2ubuntu1 [84.3 kB] Get:82 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-3 powerpc 1.4~rc2-2 [793 kB] Get:83 http://ftpmaster.internal/ubuntu/ oneiric/universe libmpich2-dev powerpc 1.4~rc2-2 [1118 kB] Get:84 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi1.3 powerpc 1.4.3-1ubuntu3 [1323 kB] Get:85 http://ftpmaster.internal/ubuntu/ oneiric/universe libopenmpi-dev powerpc 1.4.3-1ubuntu3 [2643 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.7 MB in 2s (13.7 MB/s) Selecting previously deselected package libexpat1. (Reading database ... 14215 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_powerpc.deb) ... Selecting previously deselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-1ubuntu2_powerpc.deb) ... Selecting previously deselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously deselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-1_all.deb) ... Selecting previously deselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-2.2ubuntu1_all.deb) ... Selecting previously deselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-2.2ubuntu1_powerpc.deb) ... Selecting previously deselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libxdmcp6. 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Selecting previously deselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.21-2_all.deb) ... Setting up x11-common (1:7.6+4ubuntu3) ... Selecting previously deselected package libice-dev. (Reading database ... 14758 files and directories currently installed.) Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libxft2. Unpacking libxft2 (from .../libxft2_2.2.0-2ubuntu2_powerpc.deb) ... Selecting previously deselected package libxp6. Unpacking libxp6 (from .../libxp6_1%3a1.0.1-1_powerpc.deb) ... Selecting previously deselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-1ubuntu1_powerpc.deb) ... 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Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-1_all.deb) ... Selecting previously deselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.1.99.0~git20110111.9df8b776-0ubuntu2_all.deb) ... Selecting previously deselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.2.0-2ubuntu1_powerpc.deb) ... Selecting previously deselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-1_powerpc.deb) ... Selecting previously deselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.0.9-1ubuntu1_powerpc.deb) ... Selecting previously deselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu2_powerpc.deb) ... Selecting previously deselected package file. Unpacking file (from .../file_5.04-5ubuntu2_powerpc.deb) ... Selecting previously deselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1_powerpc.deb) ... 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Selecting previously deselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-1ubuntu3_powerpc.deb) ... Selecting previously deselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-1ubuntu3_powerpc.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-1ubuntu2) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-1) ... Setting up fontconfig-config (2.8.0-2.2ubuntu1) ... Setting up libfontconfig1 (2.8.0-2.2ubuntu1) ... Setting up libxau6 (1:1.0.6-1ubuntu1) ... Setting up libxdmcp6 (1:1.1.0-1ubuntu1) ... Setting up libxcb1 (1.7-2ubuntu2) ... Setting up libx11-data (2:1.4.2-1ubuntu3) ... Setting up libx11-6 (2:1.4.2-1ubuntu3) ... Setting up libxext6 (2:1.2.0-2ubuntu1) ... Setting up libxrender1 (1:0.9.6-1ubuntu1) ... Setting up libice6 (2:1.0.7-1ubuntu1) ... Setting up x11proto-core-dev (7.0.21-2) ... Setting up libice-dev (2:1.0.7-1ubuntu1) ... Setting up libsm6 (2:1.2.0-1ubuntu1) ... Setting up libxft2 (2.2.0-2ubuntu2) ... Setting up libxp6 (1:1.0.1-1) ... Setting up libxau-dev (1:1.0.6-1ubuntu1) ... Setting up libxdmcp-dev (1:1.1.0-1ubuntu1) ... Setting up x11proto-input-dev (2.0.1-1ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-1) ... Setting up xtrans-dev (1.2.6-1) ... Setting up libpthread-stubs0 (0.3-2) ... Setting up libpthread-stubs0-dev (0.3-2) ... Setting up libxcb1-dev (1.7-2ubuntu2) ... Setting up libx11-dev (2:1.4.2-1ubuntu3) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.1.99.0~git20110111.9df8b776-0ubuntu2) ... Setting up libxext-dev (2:1.2.0-2ubuntu1) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.0.9-1ubuntu1) ... Setting up libmagic1 (5.04-5ubuntu2) ... Setting up file (5.04-5ubuntu2) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-5) ... Setting up libpipeline1 (1.2.0-1) ... Setting up libxml2 (2.7.8.dfsg-2) ... Setting up man-db (2.6.0.2-1) ... Building database of manual pages ... Setting up libarchive1 (2.8.4-1) ... Setting up libcurl3 (7.21.3-1ubuntu1) ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu3) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.4+dfsg.1-2ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.4+dfsg.1-2ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.1.6ubuntu2) ... Setting up dpatch (2.0.31) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libsm-dev (2:1.2.0-1ubuntu1) ... Setting up libxt-dev (1:1.0.9-1ubuntu1) ... Setting up x11proto-render-dev (2:0.11.1-1) ... Setting up libxrender-dev (1:0.9.6-1ubuntu1) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-1ubuntu2) ... Setting up pkg-config (0.26-1) ... Setting up libfontconfig1-dev (2.8.0-2.2ubuntu1) ... Setting up libxft-dev (2.2.0-2ubuntu2) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1) ... Setting up libfftw3-dev (3.2.2-1) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.8+dfsg-7) ... Setting up libxml2-dev (2.7.8.dfsg-2) ... Setting up openmpi-common (1.4.3-1ubuntu3) ... Setting up libibverbs1 (1.1.3-2ubuntu1) ... Setting up libibverbs-dev (1.1.3-2ubuntu1) ... Setting up libmpich2-3 (1.4~rc2-2) ... Setting up libmpich2-dev (1.4~rc2-2) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-1ubuntu3) ... Setting up libopenmpi-dev (1.4.3-1ubuntu3) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-2ubuntu1 make_3.81-8ubuntu1 dpkg-dev_1.16.0~ubuntu8 gcc-4.6_4.6.0-7ubuntu1 g++-4.6_4.6.0-7ubuntu1 binutils_2.21.51.20110421-6ubuntu1 libstdc++6-4.6-dev_4.6.0-7ubuntu1 libstdc++6_4.6.0-7ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Mon Apr 25 21:36:46 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.4-2.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.4 dpkg-source: info: unpacking gromacs_4.5.4.orig.tar.gz dpkg-source: info: applying gromacs_4.5.4-2.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.4-2 dpkg-source --before-build gromacs-4.5.4 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 30_git_release-4.5-patches not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 30_git_release-4.5-patches to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.4/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.4 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Loaded CMakeASM-ATTInformation - ASM-ATT support is still experimental, please report issues -- Configuring done -- Generating done -- Build files have been written to: 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[ 76%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o [ 76%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o [ 76%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o [ 77%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_cluster.c.o [ 77%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o [ 77%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o [ 77%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o [ 77%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_confrms.c.o [ 77%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 77%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_covar.c.o [ 77%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_current.c.o [ 78%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 78%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 78%] Building C 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`/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o Linking C executable g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o [ 79%] Linking C executable gmxcheck Building C object src/tools/CMakeFiles/gmxana.dir/gmx_disre.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o Linking C executable gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 79%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dist.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dyndom.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_enemat.c.o Linking C executable grompp [ 80%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_energy.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 80%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 80%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 80%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 80%] Building C object 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make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 81%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o [ 81%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_helix.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_mindist.c.o Linking C executable pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 82%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 82%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_msd.c.o Linking C executable tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 82%] Built target tpbconv [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_morph.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_nmeig.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_nmens.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_order.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_principal.c.o [ 82%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_polystat.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_potential.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rama.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rdf.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rms.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rmsf.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rotacf.c.o [ 83%] Building C object 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C object src/tools/CMakeFiles/gmxana.dir/gmx_wham.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/correl.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sham.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_nmtraj.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjconv.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjcat.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_trjorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 87%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o Linking C shared library libgmxana.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable do_dssp Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_anaeig [ 88%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o [ 88%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Linking C executable g_angle Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o [ 89%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bond Linking C executable g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Linking C executable g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_cluster Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Linking C executable g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_confrms [ 89%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Linking C executable g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Linking C executable g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_disre [ 90%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_dyndom Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Linking C executable g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helix Linking C executable g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o [ 92%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_helixorient Linking C executable g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_kinetics Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie Linking C executable g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_mdmat Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed Linking C executable g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o [ 93%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Linking C executable g_morph Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Linking C executable g_nmeig Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_options Linking C executable g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_polystat [ 94%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_principal [ 94%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Linking C executable g_rdf Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o [ 94%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Linking C executable g_rmsdist Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_rmsf Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf Linking C executable g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr Linking C executable g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select Linking C executable g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_sham [ 96%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_sigeps [ 96%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Linking C executable g_spol [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Linking C executable g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Building C object 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Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 78%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_kinetics.c.o /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c: In function 'main': /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:5: warning: passing argument 1 of 'gmx_strdup' from incompatible pointer type [enabled by default] /build/buildd/gromacs-4.5.4/include/string2.h:111:7: note: expected 'const char *' but argument is of type 'char **' /build/buildd/gromacs-4.5.4/src/kernel/g_protonate.c:160:33: warning: assignment from incompatible pointer type [enabled by default] Linking C executable g_protonate_d [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_spatial.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_tune_pme.c.o Linking C executable g_x2top_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o Linking C executable gmxcheck_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o [ 79%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dipoles.c.o Linking C executable gmxdump_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 79%] Built target gmxdump 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libgmxana_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable editconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable do_dssp_d Linking C executable g_anadock_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_anadock Linking C executable g_anaeig_d make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_angle_d Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_bond_d [ 89%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Linking C executable g_chi_d Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_cluster_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_cluster Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize_d Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_confrms [ 89%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar_d Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density_d Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_densmap Scanning dependencies of target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o [ 90%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dielectric_d Linking C executable g_dih_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o [ 90%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_dipoles_d Linking C executable g_disre_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dist_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat_d Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_filter_d Linking C executable g_gyrate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_filter [ 91%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_h2order Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] [ 91%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_hbond_d Linking C executable g_h2order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helix_d Linking C executable g_helixorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_kinetics_d Linking C executable g_lie_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_mdmat_d Linking C executable g_membed_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_morph_d Linking C executable g_mindist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Built target g_morph Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_msd Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_msd_d Linking C executable g_nmeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_nmtraj [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o [ 93%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmens_d Linking C executable g_nmtraj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o [ 93%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_options_d Linking C executable g_order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] [ 94%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_pme_error_d Linking C executable g_polystat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Built target g_pme_error Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_potential_d Linking C executable g_principal_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_rdf_d Linking C executable g_rama_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Built target g_rdf Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rms_d Linking C executable g_rmsdist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rmsf_d Linking C executable g_rotacf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Built target g_rotacf Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_rotmat Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_saltbr_d Linking C executable g_rotmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_saltbr [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sas Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_select_d Linking C executable g_sas_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_select [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sgangle_d Linking C executable g_sham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_sorient Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sigeps Linking C executable g_spol_d make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_tcaf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Linking C executable g_traj_d Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_tune_pme_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_vanhove_d Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_velacc_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable g_wham_d Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wheel_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable genbox_d Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Linking C executable genion_d [ 98%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat_d Linking C executable make_ndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Scanning dependencies of target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o Linking C executable trjconv_d Linking C executable trjorder_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target trjorder Scanning dependencies of target xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [100%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable xpm2ps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' touch build-basic dh_testdir /usr/bin/make -j2 -C build/mpich mdrun make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' Scanning dependencies of target gmx make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory 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src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_bond_atomtype.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/h_db.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hackblock.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hizzie.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/nm2type.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pdb2top.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pgutil.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readir.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readpull.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/resall.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/sorting.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 98%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian touch build-openmpi /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 57%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 75%] Built target gmxdump [ 87%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target gmxana make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 87%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target mdrun [ 88%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target g_anadock [ 88%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 88%] [ 89%] Built target g_bond Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] [ 89%] Built target g_cluster Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 89%] [ 89%] Built target g_confrms Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] [ 90%] Built target g_density Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 90%] [ 90%] Built target g_disre Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_gyrate [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 91%] Built target g_hbond [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] [ 92%] Built target g_kinetics Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_mdmat [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 92%] Built target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_nmens [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_options Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] [ 93%] Built target g_pme_error Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 93%] Built target g_potential [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_saltbr Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 95%] [ 95%] Built target g_sgangle Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_sigeps Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_sorient Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] [ 96%] Built target g_tcaf Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 96%] Built target g_traj [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] Built target make_ndx [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] [ 98%] Built target trjcat Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' [ 98%] [100%] Built target trjorder Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water -- Installing: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dih -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dielectric -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helixorient -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_principal -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dipoles -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_disre -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dyndom -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_enemat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_energy -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_lie -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_filter -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_gyrate -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_h2order -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_hbond -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helix -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mindist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_msd -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_morph -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmeig -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmens -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_order -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_kinetics -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_polystat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_potential -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rama -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rdf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rms -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotacf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_saltbr -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sas -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_select -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sgangle -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sham -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sorient -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spol -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spatial -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tcaf -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_traj -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tune_pme -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 57%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 75%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 87%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 88%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_bar [ 89%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] [ 89%] Built target g_chi Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] [ 89%] Built target g_cluster Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 89%] Built target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 90%] Built target g_disre Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 90%] [ 91%] Built target g_dist Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 91%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_kinetics [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_nmeig [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 93%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Built target g_polystat Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] [ 94%] Built target g_potential Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] Built target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 95%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_spol [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 96%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 97%] Built target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] [ 98%] Built target make_edi Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [ 98%] [ 98%] Built target trjconv Built target trjorder make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexwat-ferguson.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/residuetypes.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.rtp -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ps.m2p -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/elements.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ethanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/random.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/bonds.dlg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/electroneg.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/spce.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip4p.gro -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/dgsolv.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffG53a5.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/table6-12.xvg -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffoplsaa-n.tst -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/sw.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/gb.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnabonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tips3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/cmap.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/surface.dat -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ffoplsaa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/ions.itp -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/f3c.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.arn -- Up-to-date: 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/build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_select.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rms.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_rmsdist.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_densorder.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_hydorder.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_options.1 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man1/g_pme_error.1 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/basic-dp' rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_luck.1 debian/man/g_kinetics.1 debian/man/g_options.1 for manpage in /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/g_pme_error_d # three lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) # - binary-without-manpage: shipped in gromacs-data instead. dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j2 -C build/openmpi install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 78%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi' /usr/bin/make -j2 -C build/openmpi-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.4/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 78%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [ 98%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.4/build/openmpi-dp' dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.4/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.4/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/include /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs-openmpi/usr/lib/*.so /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.4/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.4/debian/gromacs/usr/share/gromacs dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring gromacs-openmpi is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records grep: ../gromacs-data/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency gromacs-data... dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.4-2_powerpc.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.4-2_powerpc.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.4-2_powerpc.deb'. INFO: pkgstriptranslations version 98 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgstriptranslations: no translation files, not creating tarball pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-openmpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-openmpi' in `../gromacs-openmpi_4.5.4-2_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../gromacs_4.5.4-2_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.4 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20110522-1556 chroot-autobuild/build/buildd/gromacs_4.5.4-2_powerpc.deb: new debian package, version 2.0. size 5466828 bytes: control archive= 6185 bytes. 1196 bytes, 26 lines control 10467 bytes, 200 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.4-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 11764 Depends: gromacs-data (= 4.5.4-2), libc6 (>= 2.7), libfftw3-3, libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.4-2_powerpc.deb: new debian package, version 2.0. size 287072 bytes: control archive= 7289 bytes. 1277 bytes, 27 lines control 14443 bytes, 217 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.4-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1876 Depends: gromacs (= 4.5.4-2), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.4-2) | gromacs-openmpi (= 4.5.4-2), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_powerpc.deb: new debian package, version 2.0. size 3509966 bytes: control archive= 2243 bytes. 1202 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.4-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 6548 Depends: libc6 (>= 2.7), libfftw3-3, libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_powerpc.deb: new debian package, version 2.0. size 3510454 bytes: control archive= 2265 bytes. 1243 bytes, 28 lines control 932 bytes, 13 lines md5sums 1820 bytes, 58 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh 246 bytes, 6 lines shlibs Package: gromacs-openmpi Source: gromacs Version: 4.5.4-2 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 6548 Depends: libc6 (>= 2.7), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs_4.5.4-2_powerpc.deb: drwxr-xr-x root/root 0 2011-05-22 15:55 ./ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 3993 2011-05-22 15:28 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 203 2010-09-29 11:35 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 2583 2011-05-22 15:28 ./usr/share/doc/gromacs/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:28 ./usr/share/doc/gromacs/copyright -rw-r--r-- root/root 2257 2011-05-22 15:55 ./usr/share/doc/gromacs/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2011-05-22 15:28 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2011-05-22 15:55 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so -> libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:55 ./usr/lib/libmd_mpi.openmpi.so -> libmd_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:55 ./usr/lib/libmd_mpi_d.openmpi.so -> libmd_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:55 ./usr/share/doc/gromacs-dev/changelog.Debian.gz -> ../gromacs/changelog.Debian.gz chroot-autobuild/build/buildd/gromacs-mpich_4.5.4-2_powerpc.deb: tar: Record size = 8 blocks drwxr-xr-x root/root 0 2011-05-22 15:55 ./ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/bin/ -rwxr-xr-x root/root 141784 2011-05-22 15:55 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 141784 2011-05-22 15:55 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/share/man/man1/ -rw-r--r-- root/root 6217 2011-05-22 15:54 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-05-22 15:28 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 1427 2011-05-22 15:47 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 1828 2011-05-22 15:28 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 2257 2011-05-22 15:56 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/lib/ -rw-r--r-- root/root 1926344 2011-05-22 15:55 ./usr/lib/libgmx_mpi.mpich.so.6 -rw-r--r-- root/root 768872 2011-05-22 15:55 ./usr/lib/libmd_mpi.mpich.so.6 -rw-r--r-- root/root 420196 2011-05-22 15:55 ./usr/lib/libgmxpreprocess_mpi.mpich.so.6 -rw-r--r-- root/root 2004184 2011-05-22 15:55 ./usr/lib/libgmx_mpi_d.mpich.so.6 -rw-r--r-- root/root 756564 2011-05-22 15:55 ./usr/lib/libmd_mpi_d.mpich.so.6 -rw-r--r-- root/root 416144 2011-05-22 15:55 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:55 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz chroot-autobuild/build/buildd/gromacs-openmpi_4.5.4-2_powerpc.deb: tar: Record size = 8 blocks drwxr-xr-x root/root 0 2011-05-22 15:55 ./ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/bin/ -rwxr-xr-x root/root 141784 2011-05-22 15:55 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 141784 2011-05-22 15:55 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/ drwxr-xr-x root/root 0 2011-05-22 15:54 ./usr/share/man/ drwxr-xr-x root/root 0 2011-05-22 15:55 ./usr/share/man/man1/ -rw-r--r-- root/root 6218 2011-05-22 15:54 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz drwxr-xr-x root/root 0 2011-05-22 15:54 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15:55 ./usr/lib/libmd_mpi_d.openmpi.so.6 -rw-r--r-- root/root 416144 2011-05-22 15:55 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-05-22 15:55 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_4.5.4-2_powerpc.changes: Format: 1.8 Date: Mon, 25 Apr 2011 13:47:00 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: powerpc Version: 4.5.4-2 Distribution: oneiric Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.4-2) unstable; urgency=low . * control: remove obsolete Build-Depends and Suggests on libice-dev, libsm-dev, libxext-dev, libxp-dev, libxt-dev. Update Standards-Version to 3.9.2. * patches/30_git_release-4.5-patches.dpatch: Routine update from upstream git, to commit 873563ef of 22 April 2011. * patches/31_manpages.dpatch: Various minor spelling and header fixes. * lintian-overrides.gromacs: Remove checks no longer needed, per #120323. * rules: Switch to using dh_lintian. Checksums-Sha1: 328bc48e776de44d8eb51751961692934b6e758e 5466828 gromacs_4.5.4-2_powerpc.deb 131e116384499c4ba313599b1b6c2f48f77a02d7 287072 gromacs-dev_4.5.4-2_powerpc.deb 98d9cb16296aec1ff58aa6c093ae4a04b7248eb2 3509966 gromacs-mpich_4.5.4-2_powerpc.deb 5f7976eeda7458c907bdd0e7626af1920d2723d4 3510454 gromacs-openmpi_4.5.4-2_powerpc.deb Checksums-Sha256: 57e11864d9d58896a70049dd43aeeeceb056839367b3835fb43307eb291219c3 5466828 gromacs_4.5.4-2_powerpc.deb 2a99fb88996100930912696531ab3f4ec37d58d1370760033c743dabf6947b3a 287072 gromacs-dev_4.5.4-2_powerpc.deb 7462997538786859bc5f32bec141f17156c4aacef80c5d20616222e008550c4f 3509966 gromacs-mpich_4.5.4-2_powerpc.deb 08135c468d2958dd18cb1ee62964aa4facac0af7c1f4c5ac46b581de9fb9dd23 3510454 gromacs-openmpi_4.5.4-2_powerpc.deb Files: c97f1975953b688554cab69e21223936 5466828 science extra gromacs_4.5.4-2_powerpc.deb be5b7da4f2b7568ee3e73eff758d5728 287072 devel extra gromacs-dev_4.5.4-2_powerpc.deb 89cb406b13e9ee3a9ec7e1ab4d9e96e3 3509966 science extra gromacs-mpich_4.5.4-2_powerpc.deb 60047516cc85fdccbb1a69acbb3d656f 3510454 science extra gromacs-openmpi_4.5.4-2_powerpc.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.4 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libibverbs-dev libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libibverbs1 libfftw3-dev x11-common libx11-dev libcroco3 libopenmpi1.3 x11proto-print-dev libxt-dev libpopt0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils openmpi-common libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libtorque2 x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libopenmpi-dev libnuma1 libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev libxrender-dev gettext-base libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 20380 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libopenmpi-dev ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing libibverbs-dev ... Removing gettext ... Removing file ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libxt-dev ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing openmpi-common ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing pkg-config ... Removing libxmlrpc-core-c3-0 ... Purging configuration files for libxmlrpc-core-c3-0 ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libx11-dev ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... Purging configuration files for x11-common ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20110522-1556 Build needed 00:27:47, 261188k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '9916ab67f02d428dffd10fc24937d2da9c2524e1'] Scanning for processes to kill in build /home/buildd/build-9916ab67f02d428dffd10fc24937d2da9c2524e1/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '9916ab67f02d428dffd10fc24937d2da9c2524e1'] Unmounting chroot for build 9916ab67f02d428dffd10fc24937d2da9c2524e1... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '9916ab67f02d428dffd10fc24937d2da9c2524e1'] Removing build 9916ab67f02d428dffd10fc24937d2da9c2524e1