RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d', '/home/buildd/filecache-default/411424cd39a6a14ad4d8f2a37e5d6b68be0a5dbb'] Synching the system clock with the buildd NTP service... 18 Oct 11:01:04 ntpdate[13973]: adjust time server 10.211.37.1 offset -0.001057 sec Unpacking chroot for build b9d49a01902c94d9ca4a81da54970a03ae7ae65d RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d'] Mounting chroot for build b9d49a01902c94d9ca4a81da54970a03ae7ae65d RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d', 'armel'] Updating debian chroot for build b9d49a01902c94d9ca4a81da54970a03ae7ae65d Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main armel Packages [1215 kB] Get:4 http://ftpmaster.internal precise/universe armel Packages [4373 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [74 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [75 B] Get:7 http://ftpmaster.internal precise/main Translation-en [703 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3195 kB] Fetched 9536 kB in 28s (333 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: liblockfile-bin libp11-kit0 The following packages will be upgraded: base-files binutils bzip2 cpp-4.6 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot g++-4.6 gcc-4.6 gcc-4.6-base grep iproute libalgorithm-diff-xs-perl libbz2-1.0 libclass-isa-perl libcomerr2 libdpkg-perl libffi6 libgcc1 libgcrypt11 libgnutls26 libgomp1 libgpg-error0 libidn11 libkeyutils1 liblockfile1 liblzma2 libmpfr4 libncurses5 libncursesw5 libnih-dbus1 libnih1 libpcre3 libreadline6 librtmp0 libselinux1 libss2 libstdc++6 libstdc++6-4.6-dev libswitch-perl libtinfo5 libusb-0.1-4 lockfile-progs manpages manpages-dev ncurses-base ncurses-bin netbase python-minimal readline-common xz-utils 53 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 26.6 MB of archives. After this operation, 2751 kB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files dpkg libgomp1 gcc-4.6-base libgcc1 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libstdc++6 libmpfr4 binutils libcomerr2 e2fslibs e2fsprogs grep ncurses-bin ncurses-base python-minimal readline-common libncursesw5 libtinfo5 libncurses5 libreadline6 libusb-0.1-4 bzip2 libbz2-1.0 liblzma2 libselinux1 libss2 liblockfile1 liblockfile-bin libffi6 libpcre3 libp11-kit0 libgnutls26 libgpg-error0 libgcrypt11 libidn11 libkeyutils1 librtmp0 xz-utils lockfile-progs netbase iproute libnih-dbus1 libnih1 manpages dpkg-dev libdpkg-perl fakeroot libalgorithm-diff-xs-perl libclass-isa-perl libswitch-perl manpages-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files armel 6.4ubuntu6 [63.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main dpkg armel 1.16.1ubuntu1 [1756 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 armel 4.6.1-15ubuntu1 [23.6 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base armel 4.6.1-15ubuntu1 [15.6 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 armel 1:4.6.1-15ubuntu1 [22.1 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 armel 4.6.1-15ubuntu1 [4071 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev armel 4.6.1-15ubuntu1 [1694 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 armel 4.6.1-15ubuntu1 [4914 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 armel 4.6.1-15ubuntu1 [4499 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 armel 4.6.1-15ubuntu1 [268 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 armel 3.0.1-6 [169 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main binutils armel 2.21.90.20111004-2ubuntu1 [2265 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libcomerr2 armel 1.42~WIP-2011-10-09-1ubuntu1 [55.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main e2fslibs armel 1.42~WIP-2011-10-09-1ubuntu1 [169 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main e2fsprogs armel 1.42~WIP-2011-10-09-1ubuntu1 [880 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main grep armel 2.9-2 [216 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin armel 5.9-2 [147 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-2 [21.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-7ubuntu4 [29.8 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main readline-common all 6.2-7 [49.9 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 armel 5.9-2 [132 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 armel 5.9-2 [58.6 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 armel 5.9-2 [110 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 armel 6.2-7 [112 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libusb-0.1-4 armel 2:0.1.12-19 [15.2 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main bzip2 armel 1.0.5-7 [36.4 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main libbz2-1.0 armel 1.0.5-7 [33.8 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main liblzma2 armel 5.1.1alpha+20110809-2 [81.5 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libselinux1 armel 2.1.0-1 [55.7 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libss2 armel 1.42~WIP-2011-10-09-1ubuntu1 [59.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main liblockfile1 armel 1.09-3 [7654 B] Get:32 http://ftpmaster.internal/ubuntu/ precise/main liblockfile-bin armel 1.09-3 [11.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libffi6 armel 3.0.11~rc1-5 [16.7 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libpcre3 armel 8.12-4 [143 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 armel 0.6-0ubuntu2 [25.8 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 armel 2.12.11-1 [409 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libgpg-error0 armel 1.10-1ubuntu1 [14.0 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libgcrypt11 armel 1.5.0-3 [270 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libidn11 armel 1.22-3 [107 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libkeyutils1 armel 1.5.2-2 [6894 B] Get:41 http://ftpmaster.internal/ubuntu/ precise/main librtmp0 armel 2.4~20110711.gitc28f1bab-1 [49.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main xz-utils armel 5.1.1alpha+20110809-2 [83.9 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main lockfile-progs armel 0.1.16 [9716 B] Get:44 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.46ubuntu1 [14.8 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main iproute armel 20110629-1 [379 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libnih-dbus1 armel 1.0.3-4ubuntu3 [14.0 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libnih1 armel 1.0.3-4ubuntu3 [48.8 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main manpages all 3.32-0.2ubuntu1 [577 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev all 1.16.1ubuntu1 [480 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl all 1.16.1ubuntu1 [180 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main fakeroot armel 1.18.1-1 [72.0 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl armel 0.04-2 [13.0 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libclass-isa-perl all 0.36-2 [11.7 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main libswitch-perl all 2.16-2 [19.2 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main manpages-dev all 3.32-0.2ubuntu1 [1653 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 26.6 MB in 6s (4020 kB/s) (Reading database ... 13976 files and directories currently installed.) Preparing to replace base-files 6.4ubuntu5 (using .../base-files_6.4ubuntu6_armel.deb) ... Unpacking replacement base-files ... Setting up base-files (6.4ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 13976 files and directories currently installed.) Preparing to replace dpkg 1.16.0.3ubuntu5 (using .../dpkg_1.16.1ubuntu1_armel.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1ubuntu1) ... (Reading database ... 13973 files and directories currently installed.) Preparing to replace libgomp1 4.6.1-9ubuntu3 (using .../libgomp1_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9ubuntu3 (using .../gcc-4.6-base_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-15ubuntu1) ... (Reading database ... 13973 files and directories currently installed.) Preparing to replace libgcc1 1:4.6.1-9ubuntu3 (using .../libgcc1_1%3a4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9ubuntu3 (using .../cpp-4.6_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9ubuntu3 (using .../libstdc++6-4.6-dev_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9ubuntu3 (using .../g++-4.6_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9ubuntu3 (using .../gcc-4.6_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libstdc++6 4.6.1-9ubuntu3 (using .../libstdc++6_4.6.1-15ubuntu1_armel.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace libmpfr4 3.0.1-5 (using .../libmpfr4_3.0.1-6_armel.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace binutils 2.21.53.20110810-0ubuntu3 (using .../binutils_2.21.90.20111004-2ubuntu1_armel.deb) ... Unpacking replacement binutils ... Preparing to replace libcomerr2 1.41.14-1ubuntu3 (using .../libcomerr2_1.42~WIP-2011-10-09-1ubuntu1_armel.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace e2fslibs 1.41.14-1ubuntu3 (using .../e2fslibs_1.42~WIP-2011-10-09-1ubuntu1_armel.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13973 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.14-1ubuntu3 (using .../e2fsprogs_1.42~WIP-2011-10-09-1ubuntu1_armel.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42~WIP-2011-10-09-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace grep 2.9-1 (using .../archives/grep_2.9-2_armel.deb) ... Unpacking replacement grep ... Setting up grep (2.9-2) ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace ncurses-bin 5.9-1ubuntu5 (using .../ncurses-bin_5.9-2_armel.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-2) ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace ncurses-base 5.9-1ubuntu5 (using .../ncurses-base_5.9-2_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-2) ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace python-minimal 2.7.2-7ubuntu2 (using .../python-minimal_2.7.2-7ubuntu4_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.2-7ubuntu4) ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace readline-common 6.2-2ubuntu1 (using .../readline-common_6.2-7_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-7) ... (Reading database ... 13974 files and directories currently installed.) Preparing to replace libncursesw5 5.9-1ubuntu5 (using .../libncursesw5_5.9-2_armel.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libtinfo5 5.9-1ubuntu5 (using .../libtinfo5_5.9-2_armel.deb) ... Unpacking replacement libtinfo5 ... Setting up libtinfo5 (5.9-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace libncurses5 5.9-1ubuntu5 (using .../libncurses5_5.9-2_armel.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace libreadline6 6.2-2ubuntu1 (using .../libreadline6_6.2-7_armel.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace libusb-0.1-4 2:0.1.12-18 (using .../libusb-0.1-4_2%3a0.1.12-19_armel.deb) ... Unpacking replacement libusb-0.1-4 ... Setting up libusb-0.1-4 (2:0.1.12-19) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace bzip2 1.0.5-6ubuntu1 (using .../bzip2_1.0.5-7_armel.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0 1.0.5-6ubuntu1 (using .../libbz2-1.0_1.0.5-7_armel.deb) ... Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.5-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace liblzma2 5.0.0-2 (using .../liblzma2_5.1.1alpha+20110809-2_armel.deb) ... Unpacking replacement liblzma2 ... Setting up liblzma2 (5.1.1alpha+20110809-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace libselinux1 2.0.98-1.1 (using .../libselinux1_2.1.0-1_armel.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.0-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace libss2 1.41.14-1ubuntu3 (using .../libss2_1.42~WIP-2011-10-09-1ubuntu1_armel.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 13974 files and directories currently installed.) Preparing to replace liblockfile1 1.08-4 (using .../liblockfile1_1.09-3_armel.deb) ... Unpacking replacement liblockfile1 ... Selecting previously unselected package liblockfile-bin. Unpacking liblockfile-bin (from .../liblockfile-bin_1.09-3_armel.deb) ... Preparing to replace libffi6 3.0.11~rc1-2 (using .../libffi6_3.0.11~rc1-5_armel.deb) ... Unpacking replacement libffi6 ... Preparing to replace libpcre3 8.12-3ubuntu2 (using .../libpcre3_8.12-4_armel.deb) ... Unpacking replacement libpcre3 ... Selecting previously unselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.6-0ubuntu2_armel.deb) ... Preparing to replace libgnutls26 2.10.5-1ubuntu3 (using .../libgnutls26_2.12.11-1_armel.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libgpg-error0 1.10-0.3ubuntu1 (using .../libgpg-error0_1.10-1ubuntu1_armel.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.5.0-1 (using .../libgcrypt11_1.5.0-3_armel.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libidn11 1.22-2 (using .../libidn11_1.22-3_armel.deb) ... Unpacking replacement libidn11 ... Preparing to replace libkeyutils1 1.4-6 (using .../libkeyutils1_1.5.2-2_armel.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace librtmp0 2.3-2ubuntu1 (using .../librtmp0_2.4~20110711.gitc28f1bab-1_armel.deb) ... Unpacking replacement librtmp0 ... Preparing to replace xz-utils 5.0.0-2 (using .../xz-utils_5.1.1alpha+20110809-2_armel.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.1.1alpha+20110809-2) ... (Reading database ... 13980 files and directories currently installed.) Preparing to replace lockfile-progs 0.1.15ubuntu1 (using .../lockfile-progs_0.1.16_armel.deb) ... Unpacking replacement lockfile-progs ... Preparing to replace netbase 4.45ubuntu3 (using .../netbase_4.46ubuntu1_all.deb) ... Unpacking replacement netbase ... Preparing to replace iproute 20110315-1build1 (using .../iproute_20110629-1_armel.deb) ... Unpacking replacement iproute ... Preparing to replace libnih-dbus1 1.0.3-4ubuntu2 (using .../libnih-dbus1_1.0.3-4ubuntu3_armel.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libnih1 1.0.3-4ubuntu2 (using .../libnih1_1.0.3-4ubuntu3_armel.deb) ... Unpacking replacement libnih1 ... Preparing to replace manpages 3.27-1ubuntu2 (using .../manpages_3.32-0.2ubuntu1_all.deb) ... Unpacking replacement manpages ... Preparing to replace dpkg-dev 1.16.0.3ubuntu5 (using .../dpkg-dev_1.16.1ubuntu1_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.0.3ubuntu5 (using .../libdpkg-perl_1.16.1ubuntu1_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace fakeroot 1.17-1 (using .../fakeroot_1.18.1-1_armel.deb) ... Unpacking replacement fakeroot ... Preparing to replace libalgorithm-diff-xs-perl 0.04-1build1 (using .../libalgorithm-diff-xs-perl_0.04-2_armel.deb) ... Unpacking replacement libalgorithm-diff-xs-perl ... Preparing to replace libclass-isa-perl 0.36-1 (using .../libclass-isa-perl_0.36-2_all.deb) ... Unpacking replacement libclass-isa-perl ... Preparing to replace libswitch-perl 2.16-1 (using .../libswitch-perl_2.16-2_all.deb) ... Unpacking replacement libswitch-perl ... Preparing to replace manpages-dev 3.27-1ubuntu2 (using .../manpages-dev_3.32-0.2ubuntu1_all.deb) ... Unpacking replacement manpages-dev ... Setting up libgomp1 (4.6.1-15ubuntu1) ... Setting up libmpfr4 (3.0.1-6) ... Setting up cpp-4.6 (4.6.1-15ubuntu1) ... Setting up binutils (2.21.90.20111004-2ubuntu1) ... Setting up gcc-4.6 (4.6.1-15ubuntu1) ... Setting up libncursesw5 (5.9-2) ... Setting up bzip2 (1.0.5-7) ... Setting up liblockfile-bin (1.09-3) ... Setting up liblockfile1 (1.09-3) ... Setting up libffi6 (3.0.11~rc1-5) ... Setting up libpcre3 (8.12-4) ... Setting up libp11-kit0 (0.6-0ubuntu2) ... Setting up libgpg-error0 (1.10-1ubuntu1) ... Setting up libgcrypt11 (1.5.0-3) ... Setting up libgnutls26 (2.12.11-1) ... Setting up libidn11 (1.22-3) ... Setting up libkeyutils1 (1.5.2-2) ... Setting up librtmp0 (2.4~20110711.gitc28f1bab-1) ... Setting up lockfile-progs (0.1.16) ... Setting up netbase (4.46ubuntu1) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up iproute (20110629-1) ... Setting up libnih1 (1.0.3-4ubuntu3) ... Setting up libnih-dbus1 (1.0.3-4ubuntu3) ... Setting up manpages (3.32-0.2ubuntu1) ... Setting up libdpkg-perl (1.16.1ubuntu1) ... Setting up dpkg-dev (1.16.1ubuntu1) ... Setting up fakeroot (1.18.1-1) ... Setting up libalgorithm-diff-xs-perl (0.04-2) ... Setting up libclass-isa-perl (0.36-2) ... Setting up libswitch-perl (2.16-2) ... Setting up manpages-dev (3.32-0.2ubuntu1) ... Setting up g++-4.6 (4.6.1-15ubuntu1) ... Setting up libstdc++6-4.6-dev (4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d', 'armel', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armel', '--comp=universe', 'gromacs_4.5.5-1.dsc'] Initiating build b9d49a01902c94d9ca4a81da54970a03ae7ae65d with 2 processor cores. Automatic build of gromacs_4.5.5-1 on shedir by sbuild/armel 1.170.5 Build started at 20111018-1106 ****************************************************************************** gromacs_4.5.5-1.dsc exists in cwd sh: gcc: not found ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found sh: gcc: not found Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0ldbl libice-dev libice6 libmagic1 libmpich2-3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0-dev libgsl0ldbl libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 28.0 MB of archives. After this operation, 90.1 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 libarchive1 libcurl3 x11-common libice6 libsm6 libxft2 libxp6 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base libxml2 man-db libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper dpatch lesstif2 libice-dev libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libxml2-dev libmpich2-3 libmpich2-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armel 2.0.1-7ubuntu3 [103 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 armel 2.4.4-2ubuntu1 [267 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core armel 2.33-2 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config armel 2.8.0-3ubuntu2 [44.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 armel 2.8.0-3ubuntu2 [106 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armel 1.2.0-3 [20.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxau6 armel 1:1.0.6-3 [7136 B] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 armel 1:1.1.0-3 [11.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 armel 1.7-3 [33.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-data armel 2:1.4.4-2ubuntu1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 armel 2:1.4.4-2ubuntu1 [686 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libxext6 armel 2:1.3.0-3 [27.9 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 armel 1:0.9.6-2 [16.8 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libarchive1 armel 2.8.5-3 [99.9 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libcurl3 armel 7.21.6-3ubuntu3 [203 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main x11-common armel 1:7.6+7ubuntu7 [56.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libice6 armel 2:1.0.7-2 [37.9 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libsm6 armel 2:1.2.0-2 [15.1 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libxft2 armel 2.2.0-3ubuntu1 [34.8 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libxp6 armel 1:1.0.1-1 [14.4 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools armel 1:1.8-2 [10.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev armel 7.0.22-1 [299 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev armel 1:1.0.6-3 [9350 B] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev armel 1:1.1.0-3 [42.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev armel 2.0.2-2ubuntu1 [69.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev armel 1.0.5-2 [27.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev armel 1.2.6-2 [82.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 armel 0.3-2.1 [3292 B] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev armel 0.3-2.1 [2426 B] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev armel 1.7-3 [70.6 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev armel 2:1.4.4-2ubuntu1 [3155 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev armel 7.2.0-3 [253 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev armel 2:1.3.0-3 [141 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libxp-dev armel 1:1.0.1-1 [80.1 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libxt6 armel 1:1.1.1-2 [146 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armel 5.04-5ubuntu3 [199 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main file armel 5.04-5ubuntu3 [19.5 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 armel 1.16-1 [32.8 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armel 8.2.3 [194 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armel 0.18.1.1-3ubuntu1 [56.1 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main groff-base armel 1.21-6 [934 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armel 2.7.8.dfsg-5 [551 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main man-db armel 2.6.0.2-2 [675 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libxmlrpc-core-c3-0 armel 1.16.32-0ubuntu4 [84.1 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main cmake-data all 2.8.5-1ubuntu1 [709 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main cmake armel 2.8.5-1ubuntu1 [3519 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main html2text armel 1.3.2a-15 [94.3 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armel 0.6.2-1 [89.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armel 0.9.3-4 [394 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main gettext armel 0.18.1.1-3ubuntu1 [1156 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu1 [212 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 8.9.8ubuntu1 [478 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main dpatch all 2.0.32 [53.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2 armel 1:0.95.2-1 [568 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main libice-dev armel 2:1.0.7-2 [123 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev armel 2:1.2.0-2 [86.3 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev armel 1:1.1.1-2 [442 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev armel 2:0.11.1-2 [20.1 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev armel 1:0.9.6-2 [23.8 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev armel 2.0.1-7ubuntu3 [186 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev armel 1:1.2.3.4.dfsg-3ubuntu3 [161 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev armel 2.4.4-2ubuntu1 [692 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main pkg-config armel 0.26-1ubuntu1 [38.0 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev armel 2.8.0-3ubuntu2 [635 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev armel 2.2.0-3ubuntu1 [46.0 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2-dev armel 1:0.95.2-1 [814 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/universe libcr0 armel 0.8.2-15ubuntu1 [18.0 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/universe libcr-dev armel 0.8.2-15ubuntu1 [29.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-3 armel 3.2.2-1ubuntu2 [1050 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-dev armel 3.2.2-1ubuntu2 [1282 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libgsl0ldbl armel 1.15+dfsg-1 [830 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libgsl0-dev armel 1.15+dfsg-1 [1090 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libxml2-dev armel 2.7.8.dfsg-5 [653 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-3 armel 1.4-1 [743 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-dev armel 1.4-1 [963 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 28.0 MB in 7s (3983 kB/s) Selecting previously unselected package libexpat1. (Reading database ... 13993 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_armel.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2ubuntu1_armel.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_armel.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3ubuntu2_armel.deb) ... Selecting previously unselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3ubuntu2_armel.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_armel.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_armel.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_armel.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.7-3_armel.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2ubuntu1_armel.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2ubuntu1_armel.deb) ... Selecting previously unselected package libxext6. Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_armel.deb) ... Selecting previously unselected package libxrender1. Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_armel.deb) ... Selecting previously unselected package libarchive1. Unpacking libarchive1 (from .../libarchive1_2.8.5-3_armel.deb) ... Selecting previously unselected package libcurl3. Unpacking libcurl3 (from .../libcurl3_7.21.6-3ubuntu3_armel.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.6+7ubuntu7_armel.deb) ... Selecting previously unselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.7-2_armel.deb) ... Selecting previously unselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_armel.deb) ... Selecting previously unselected package libxft2. Unpacking libxft2 (from .../libxft2_2.2.0-3ubuntu1_armel.deb) ... Selecting previously unselected package libxp6. Unpacking libxp6 (from .../libxp6_1%3a1.0.1-1_armel.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.8-2_armel.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_armel.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-3_armel.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-3_armel.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0.2-2ubuntu1_armel.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_armel.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_armel.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-2.1_armel.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-2.1_armel.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.7-3_armel.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.4-2ubuntu1_armel.deb) ... Setting up x11-common (1:7.6+7ubuntu7) ... invoke-rc.d: policy-rc.d denied execution of start. Selecting previously unselected package x11proto-print-dev. (Reading database ... 15635 files and directories currently installed.) Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-1_all.deb) ... Selecting previously unselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.2.0-3_armel.deb) ... Selecting previously unselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.3.0-3_armel.deb) ... Selecting previously unselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-1_armel.deb) ... Selecting previously unselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_armel.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.04-5ubuntu3_armel.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.04-5ubuntu3_armel.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1_armel.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_armel.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-3ubuntu1_armel.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_armel.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_armel.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_armel.deb) ... Selecting previously unselected package libxmlrpc-core-c3-0. Unpacking libxmlrpc-core-c3-0 (from .../libxmlrpc-core-c3-0_1.16.32-0ubuntu4_armel.deb) ... Selecting previously unselected package emacsen-common. Unpacking emacsen-common (from .../emacsen-common_1.4.19ubuntu2_all.deb) ... Selecting previously unselected package cmake-data. Unpacking cmake-data (from .../cmake-data_2.8.5-1ubuntu1_all.deb) ... Selecting previously unselected package cmake. Unpacking cmake (from .../cmake_2.8.5-1ubuntu1_armel.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_armel.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_armel.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_armel.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-3ubuntu1_armel.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.8ubuntu1_all.deb) ... Selecting previously unselected package dpatch. Unpacking dpatch (from .../archives/dpatch_2.0.32_all.deb) ... Selecting previously unselected package lesstif2. Unpacking lesstif2 (from .../lesstif2_1%3a0.95.2-1_armel.deb) ... Selecting previously unselected package libice-dev. Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-2_armel.deb) ... Selecting previously unselected package libsm-dev. Unpacking libsm-dev (from .../libsm-dev_2%3a1.2.0-2_armel.deb) ... Selecting previously unselected package libxt-dev. Unpacking libxt-dev (from .../libxt-dev_1%3a1.1.1-2_armel.deb) ... Selecting previously unselected package x11proto-render-dev. Unpacking x11proto-render-dev (from .../x11proto-render-dev_2%3a0.11.1-2_armel.deb) ... Selecting previously unselected package libxrender-dev. Unpacking libxrender-dev (from .../libxrender-dev_1%3a0.9.6-2_armel.deb) ... Selecting previously unselected package libexpat1-dev. Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-7ubuntu3_armel.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu3_armel.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.4-2ubuntu1_armel.deb) ... Selecting previously unselected package pkg-config. Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_armel.deb) ... Selecting previously unselected package libfontconfig1-dev. Unpacking libfontconfig1-dev (from .../libfontconfig1-dev_2.8.0-3ubuntu2_armel.deb) ... Selecting previously unselected package libxft-dev. Unpacking libxft-dev (from .../libxft-dev_2.2.0-3ubuntu1_armel.deb) ... Selecting previously unselected package lesstif2-dev. Unpacking lesstif2-dev (from .../lesstif2-dev_1%3a0.95.2-1_armel.deb) ... Selecting previously unselected package libcr0. Unpacking libcr0 (from .../libcr0_0.8.2-15ubuntu1_armel.deb) ... Selecting previously unselected package libcr-dev. Unpacking libcr-dev (from .../libcr-dev_0.8.2-15ubuntu1_armel.deb) ... Selecting previously unselected package libfftw3-3. Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1ubuntu2_armel.deb) ... Selecting previously unselected package libfftw3-dev. Unpacking libfftw3-dev (from .../libfftw3-dev_3.2.2-1ubuntu2_armel.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_armel.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg-1_armel.deb) ... Selecting previously unselected package libxml2-dev. Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5_armel.deb) ... Selecting previously unselected package libmpich2-3. Unpacking libmpich2-3 (from .../libmpich2-3_1.4-1_armel.deb) ... Selecting previously unselected package libmpich2-dev. Unpacking libmpich2-dev (from .../libmpich2-dev_1.4-1_armel.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-2ubuntu1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libpipeline1 (1.2.0-3) ... Setting up libxau6 (1:1.0.6-3) ... Setting up libxdmcp6 (1:1.1.0-3) ... Setting up libxcb1 (1.7-3) ... Setting up libx11-data (2:1.4.4-2ubuntu1) ... Setting up libx11-6 (2:1.4.4-2ubuntu1) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libarchive1 (2.8.5-3) ... Setting up libcurl3 (7.21.6-3ubuntu3) ... Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxft2 (2.2.0-3ubuntu1) ... Setting up libxp6 (1:1.0.1-1) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-3) ... Setting up libxdmcp-dev (1:1.1.0-3) ... Setting up x11proto-input-dev (2.0.2-2ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1) ... Setting up libpthread-stubs0-dev (0.3-2.1) ... Setting up libxcb1-dev (1.7-3) ... Setting up libx11-dev (2:1.4.4-2ubuntu1) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libmagic1 (5.04-5ubuntu3) ... Setting up file (5.04-5ubuntu3) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-6) ... Setting up libxml2 (2.7.8.dfsg-5) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu4) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.5-1ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.5-1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.8ubuntu1) ... Setting up dpatch (2.0.32) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-2ubuntu1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu2) ... Setting up libxft-dev (2.2.0-3ubuntu1) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1ubuntu2) ... Setting up libfftw3-dev (3.2.2-1ubuntu2) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libxml2-dev (2.7.8.dfsg-5) ... Setting up libmpich2-3 (1.4-1) ... Setting up libmpich2-dev (1.4-1) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu5 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1ubuntu1 gcc-4.6_4.6.1-15ubuntu1 g++-4.6_4.6.1-15ubuntu1 binutils_2.21.90.20111004-2ubuntu1 libstdc++6-4.6-dev_4.6.1-15ubuntu1 libstdc++6_4.6.1-15ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Thu Sep 22 02:14:17 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.5-1.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.5 dpkg-source: info: unpacking gromacs_4.5.5.orig.tar.gz dpkg-source: info: applying gromacs_4.5.5-1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.5-1 dpkg-source --before-build gromacs-4.5.5 dpkg-buildpackage: host architecture armel /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabi/libX11.so;/usr/lib/arm-linux-gnueabi/libXext.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabi/libX11.so;/usr/lib/arm-linux-gnueabi/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/arm-linux-gnueabi/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabi/libX11.so;/usr/lib/arm-linux-gnueabi/libXext.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabi/libX11.so;/usr/lib/arm-linux-gnueabi/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/arm-linux-gnueabi/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich-dp touch configure-stamp dh_testdir /usr/bin/make -j2 -C build/basic make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/calcgrid.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/dihres.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pargs.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rando.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/libxdrf.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/princ.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/cinvsqrtdata.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/random.c.o [ 2%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gbutil.c.o [ 2%] Building C object 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[ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_densorder.c.o Building C object src/tools/CMakeFiles/gmxana.dir/powerspect.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/dens_filter.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/binsearch.c.o Linking C shared library libgmxana.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable g_anadock Linking C executable do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_anaeig [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o Linking C executable g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_bar Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o Linking C executable g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_bundle [ 91%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Linking C executable g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Linking C executable g_cluster Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Linking C executable g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Linking C executable g_confrms Linking C executable g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Linking C executable g_current Linking C executable g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o Linking C executable g_densmap Linking C executable g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o [ 92%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dielectric Linking C executable g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dih Scanning dependencies of target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_dipoles Linking C executable g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_disre Scanning dependencies of target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o [ 93%] Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o Linking C executable g_dist Linking C executable g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_dyndom Linking C executable g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dyndom [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_filter Linking C executable g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_energy [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_gyrate Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_h2order Linking C executable g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_h2order Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helix Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix Linking C executable g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_helix Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hydorder Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o Linking C executable g_helixorient Linking C executable g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_hydorder Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_kinetics Linking C executable g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_kinetics Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_membed Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] [ 95%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_mdmat Linking C executable g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o [ 95%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Linking C executable g_mindist Linking C executable g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o [ 95%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_msd Linking C executable g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmens Linking C executable g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_options Linking C executable g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_options [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_pme_error Linking C executable g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_potential Linking C executable g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o [ 97%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rama Linking C executable g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rdf Scanning dependencies of target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o [ 97%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rms Linking C executable g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Scanning dependencies of target g_rmsf Built target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rmsf Linking C executable g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_rotmat Linking C executable g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_sas Linking C executable g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o [ 98%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sgangle Linking C executable g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o [ 98%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial Linking C executable g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_spol Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_vanhove [ 99%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_wham [ 99%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Linking C executable genion Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o Linking C executable trjconv Linking C executable make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjconv make[3]: Entering directory 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directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_covar_d [ 92%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density_d Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densorder_d Linking C executable g_dielectric_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih_d Linking C executable g_dipoles_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre_d Linking C executable g_dist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_dist Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dos_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat_d Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_filter_d [ 93%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_gyrate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_h2order_d [ 94%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_hbond_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Linking C executable g_helix_d Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helixorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_hydorder_d Linking C executable g_kinetics_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_lie [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie_d Linking C executable g_mdmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mdmat Scanning dependencies of target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o [ 95%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed_d Linking C executable g_mindist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_morph_d Linking C executable g_msd_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Linking C executable g_nmeig_d Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_nmtraj_d Linking C executable g_options_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] [ 96%] Built target g_options Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_order_d Linking C executable g_pme_error_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_pme_error [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_polystat_d Linking C executable g_potential_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal_d Linking C executable g_rama_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o [ 97%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf_d Linking C executable g_rms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rms Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsdist Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rmsf_d Linking C executable g_rmsdist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rmsf Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rotacf Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf_d Linking C executable g_rotmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rotacf [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr_d Linking C executable g_sas_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o [ 98%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select_d Linking C executable g_sgangle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target g_sgangle Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_spatial_d [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Linking C executable g_spol_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_tcaf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_traj_d Linking C executable g_tune_pme_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_vanhove_d Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_velacc_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wham_d Linking C executable g_wheel_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable genbox_d [ 99%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/genion.dir/genion.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable genion_d [ 99%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genrestr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o Linking C executable trjconv_d Linking C executable make_ndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o Scanning dependencies of target xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable trjorder_d Linking C executable xpm2ps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' touch build-basic dh_testdir /usr/bin/make -j2 -C build/mpich mdrun make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target gmx make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/dihres.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/calcgrid.c.o [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/pargs.c.o [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rando.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/libxdrf.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/princ.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_cyclecounter.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/cinvsqrtdata.c.o [ 1%] Building C object 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`/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] [ 97%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH2/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian touch build-mpich dh_testdir touch build-openmpi /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Built target gmxana [ 88%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target g_angle Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] [ 91%] Built target g_bar Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_chi [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_cluster [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_covar [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_current Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_densorder Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_dielectric Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_dipoles Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_dist Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_dyndom Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_filter Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_gyrate Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_hbond Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_helixorient Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Built target g_lie Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] [ 95%] Built target g_mdmat Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] [ 95%] Built target g_morph Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] [ 95%] Built target g_nmeig Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] [ 95%] Built target g_nmens Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_options Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_polystat Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_potential Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] [ 97%] Built target g_rama Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] [ 97%] Built target g_rms Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_tcaf [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wham [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjconv [ 99%] Built target trjorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_analyze.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_sham.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/genpr.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/yourown.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/ene.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_density.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_morph.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_potential.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_densmap.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/mdrun.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_velacc.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_dyndom.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_hbond.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/genion.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/include_bot.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_h2order.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/trr.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/tpbconv.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_confrms.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/xvg.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/log.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/map.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/trj.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/xtc.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/make_ndx.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_rama.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_msd.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_dielectric.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_rmsf.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/top.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/tpa.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_disre.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_bond.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/protonate.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/files.html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_sas.html -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/tpbconv.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_traj.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_wheel.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/gmxdump.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_helix.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/mdrun.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_bond.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_densmap.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_covar.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_gyrate.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_h2order.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_sham.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/grompp.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_membed.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_anadock.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_analyze.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_options.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_hbond.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rotacf.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_polystat.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rmsdist.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_mdmat.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_order.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_dipoles.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_wham.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_sas.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_morph.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rotmat.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_xrama.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rdf.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_density.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_nmeig.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genion.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_dielectric.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_dist.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_vanhove.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_clustsize.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_energy.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_helixorient.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genconf.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmx.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libmd.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mdrun -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/grompp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/tpbconv -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/pdb2gmx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_protonate -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_luck -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxdump -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_x2top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxcheck -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/do_dssp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/editconf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/eneconv -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genbox -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genconf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genrestr -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmtraj -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mk_angndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjcat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjconv -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wheel -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xpm2ps -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genion -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anadock -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_edi -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_analyze -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anaeig -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_angle -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bond -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bundle -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_chi -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_cluster -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_confrms -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_covar -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_current -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_density -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densmap -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dih -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dielectric -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target gmxdump [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target eneconv [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_density Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_densorder Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dist [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_energy Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] [ 95%] Built target g_membed Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] [ 95%] Built target g_morph Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_analyze.html -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_sham.html -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/genpr.html -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/yourown.html -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/ene.html -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./html/online/g_density.html -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/bromacs.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/highway.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa-n.tst -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tips3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/cmap.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/gb.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnabonded.itp -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/bonds.dlg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/random.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a5.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-12.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencads.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/edissoc.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx2.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: 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Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/template/CMakeLists.txt -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/. -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_blas.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./perf_est.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./dihre.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nrnb.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./position.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_cyclecounter.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_sse2_single.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_ga2la.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./xdrf.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./sysstuff.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./3dview.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nonbonded.h -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/cycles.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc_intrinsics.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc_ppc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/msvc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc_x86.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/xlc_ppc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc_ia64.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic/gcc_spinlock.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/barrier.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/collective.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/tmpi.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/threads.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/event.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/lock.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/mpi_bindings.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/numa_malloc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/atomic.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/wait.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi/list.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./selmethod.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./symtab.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_statistics.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./tmpi.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./wman.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./disre.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mvdata.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./oenv.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nrjac.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./assert.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pdb2top.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./names.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_random.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./force.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mainpage.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mtxio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./statutil.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./coulomb.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./shift.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mdrun.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./trajana.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_arpack.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./enxio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./ns.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./poscalc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./chargegroup.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./displacement.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./writeps.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mdatoms.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./network.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./md5.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./resall.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./bondf.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nrama.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./calcgrid.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./inputrec.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./partdec.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./rbin.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./orires.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmxcpp.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./sighandler.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./confio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./ebin.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vec.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_matrix.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gstat.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mdebin.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./domdec_network.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./checkpoint.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_parallel_3dfft.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./selparam.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmxfio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pdbio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gbutil.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./constr.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./macros.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./rdgroup.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./smalloc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./split.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./trnio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./qmmm.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_sort.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./selvalue.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_fatal.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vmdplugin.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./topsort.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./ffscanf.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./magic.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mshift.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./hackblock.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_lapack.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gpp_nextnb.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./selection.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./rmpbc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./molfile_plugin.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./random.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./atomprop.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pbc.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vsite.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gpp_atomtype.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./tgroup.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./strdb.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vmddlopen.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mpelogging.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_system_xdr.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./futil.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./thread_mpi.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./xvgr.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pull.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nsgrid.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vmdio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./readinp.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gen_ad.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_ana.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./sortwater.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_fft.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./histogram.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./xtcio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./viewit.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./physics.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./invblock.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./domdec.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./filenm.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./genborn.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./princ.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_sse2_double.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./tpxio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./sfactor.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pme.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./pppm.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./wgms.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./splitter.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./maths.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./typedefs.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./index.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./update.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./toputil.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./grompp.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./vcm.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./calch.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./matio.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./nbsearch.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./mtop_util.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./indexutil.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./sparsematrix.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./string2.h -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include/gromacs/./gmx_wallcycle.h -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_*.1 for manpage in /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d # two lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform armel: gromacs gromacs-dev gromacs-mpich dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 104 INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records grep: ../gromacs-data/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency gromacs-data... dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.5-1_armel.deb'. pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.5-1_armel.deb'. INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.5-1_armel.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../gromacs_4.5.5-1_armel.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.5 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111018-1156 chroot-autobuild/build/buildd/gromacs_4.5.5-1_armel.deb: new debian package, version 2.0. size 5032300 bytes: control archive= 6330 bytes. 1215 bytes, 26 lines control 10783 bytes, 206 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.5-1 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8839 Depends: gromacs-data (= 4.5.5-1), libc6 (>= 2.7), libfftw3-3, libgcc1 (>= 1:4.4.0), libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.5-1_armel.deb: new debian package, version 2.0. size 287552 bytes: control archive= 7257 bytes. 1245 bytes, 27 lines control 14289 bytes, 215 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.5-1 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1433 Depends: gromacs (= 4.5.5-1), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.5-1), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_armel.deb: new debian package, version 2.0. size 3162222 bytes: control archive= 2243 bytes. 1222 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.5-1 Architecture: armel Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 4897 Depends: libc6 (>= 2.7), libfftw3-3, libgcc1 (>= 1:4.4.0), libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs_4.5.5-1_armel.deb: drwxr-xr-x root/root 0 2011-10-18 11:55 ./ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/ drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2011-10-18 11:08 ./usr/share/lintian/overrides/gromacs drwxr-xr-x root/root 0 2011-10-18 11:52 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 1828 2011-10-18 11:08 ./usr/share/doc/gromacs/copyright -rw-r--r-- root/root 203 2011-09-21 12:34 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 2583 2011-10-18 11:08 ./usr/share/doc/gromacs/README.Debian -rw-r--r-- root/root 3993 2011-10-18 11:08 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 2276 2011-10-18 11:56 ./usr/share/doc/gromacs/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/bin/ -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_densmap_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_options -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_bundle -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_rotacf -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_select_d -rwxr-xr-x root/root 18032 2011-10-18 11:55 ./usr/bin/gmxdump_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/genrestr -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_order -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_density -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_saltbr -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_hydorder_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_wham_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_traj -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/trjorder -rwxr-xr-x root/root 9748 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2011-10-18 11:55 ./usr/bin/g_sorient_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/genbox_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_chi_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_nmtraj -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_energy_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/xpm2ps_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_membed -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_chi -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/editconf -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_densmap -rwxr-xr-x root/root 22064 2011-10-18 11:55 ./usr/bin/make_ndx -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_vanhove -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/genconf_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_sas_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_bond_d -rwxr-xr-x root/root 5508 2011-10-18 11:55 ./usr/bin/g_h2order_d -rwxr-xr-x root/root 5508 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-rw-r--r-- root/root 2400 2011-09-21 12:34 ./usr/include/gromacs/splitter.h -rw-r--r-- root/root 4771 2011-09-21 12:34 ./usr/include/gromacs/maths.h -rw-r--r-- root/root 7057 2011-09-21 12:34 ./usr/include/gromacs/typedefs.h -rw-r--r-- root/root 4858 2011-09-21 12:34 ./usr/include/gromacs/index.h -rw-r--r-- root/root 8185 2011-09-21 12:34 ./usr/include/gromacs/update.h -rw-r--r-- root/root 2546 2011-09-21 12:34 ./usr/include/gromacs/toputil.h -rw-r--r-- root/root 5432 2011-09-21 12:34 ./usr/include/gromacs/grompp.h -rw-r--r-- root/root 2893 2011-09-21 12:34 ./usr/include/gromacs/vcm.h -rw-r--r-- root/root 2264 2011-09-21 12:34 ./usr/include/gromacs/calch.h -rw-r--r-- root/root 4849 2011-09-21 12:34 ./usr/include/gromacs/matio.h -rw-r--r-- root/root 3686 2011-09-21 12:34 ./usr/include/gromacs/nbsearch.h -rw-r--r-- root/root 7484 2011-09-21 12:34 ./usr/include/gromacs/mtop_util.h -rw-r--r-- root/root 13080 2011-09-21 12:34 ./usr/include/gromacs/indexutil.h -rw-r--r-- root/root 7616 2011-09-21 12:34 ./usr/include/gromacs/sparsematrix.h -rw-r--r-- root/root 3949 2011-09-21 12:34 ./usr/include/gromacs/string2.h -rw-r--r-- root/root 2991 2011-09-21 12:34 ./usr/include/gromacs/gmx_wallcycle.h -rw-r--r-- root/root 3910 2011-09-21 12:34 ./usr/include/gromacs/do_fit.h -rw-r--r-- root/root 1771 2011-09-21 12:34 ./usr/include/gromacs/calcmu.h -rw-r--r-- root/root 2732 2011-09-21 12:34 ./usr/include/gromacs/gmxcomplex.h -rw-r--r-- root/root 2649 2011-09-21 12:34 ./usr/include/gromacs/shellfc.h -rw-r--r-- root/root 3666 2011-09-21 12:34 ./usr/include/gromacs/copyrite.h -rw-r--r-- root/root 4259 2011-09-21 12:34 ./usr/include/gromacs/txtdump.h -rw-r--r-- root/root 4406 2011-09-21 12:34 ./usr/include/gromacs/warninp.h -rw-r--r-- root/root 5895 2011-09-21 12:34 ./usr/include/gromacs/centerofmass.h -rw-r--r-- root/root 3846 2011-09-21 12:34 ./usr/include/gromacs/main.h -rw-r--r-- root/root 2575 2011-09-21 12:34 ./usr/include/gromacs/edsam.h drwxr-xr-x root/root 0 2011-10-18 11:52 ./usr/include/gromacs/types/ -rw-r--r-- root/root 6577 2011-09-21 12:34 ./usr/include/gromacs/types/nrnb.h -rw-r--r-- root/root 2200 2011-09-21 12:34 ./usr/include/gromacs/types/iteratedconstraints.h -rw-r--r-- root/root 11632 2011-09-21 12:34 ./usr/include/gromacs/types/forcerec.h -rw-r--r-- root/root 1704 2011-09-21 12:34 ./usr/include/gromacs/types/symtab.h -rw-r--r-- root/root 5280 2011-09-21 12:34 ./usr/include/gromacs/types/atoms.h -rw-r--r-- root/root 1598 2011-09-21 12:34 ./usr/include/gromacs/types/oenv.h -rw-r--r-- root/root 4493 2011-09-21 12:34 ./usr/include/gromacs/types/qmmmrec.h -rw-r--r-- root/root 9798 2011-09-21 12:34 ./usr/include/gromacs/types/idef.h -rw-r--r-- root/root 2362 2011-09-21 12:34 ./usr/include/gromacs/types/ns.h -rw-r--r-- root/root 2212 2011-09-21 12:34 ./usr/include/gromacs/types/globsig.h -rw-r--r-- root/root 17408 2011-09-21 12:34 ./usr/include/gromacs/types/inputrec.h -rw-r--r-- root/root 2251 2011-09-21 12:34 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-rw-r--r-- root/root 2993 2011-09-21 12:34 ./usr/include/gromacs/types/nsgrid.h -rw-r--r-- root/root 2777 2011-09-21 12:34 ./usr/include/gromacs/types/filenm.h -rw-r--r-- root/root 4602 2011-09-21 12:34 ./usr/include/gromacs/types/genborn.h -rw-r--r-- root/root 2227 2011-09-21 12:34 ./usr/include/gromacs/types/graph.h -rw-r--r-- root/root 6813 2011-09-21 12:34 ./usr/include/gromacs/types/enums.h -rw-r--r-- root/root 2389 2011-09-21 12:34 ./usr/include/gromacs/types/mdatom.h -rw-r--r-- root/root 3472 2011-09-21 12:34 ./usr/include/gromacs/types/group.h -rw-r--r-- root/root 1616 2011-09-21 12:34 ./usr/include/gromacs/types/shellfc.h -rw-r--r-- root/root 4079 2011-09-21 12:34 ./usr/include/gromacs/types/nblist.h -rw-r--r-- root/root 7903 2011-09-21 12:34 ./usr/include/gromacs/types/simple.h drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/lib/ drwxr-xr-x root/root 0 2011-10-18 11:52 ./usr/lib/pkgconfig/ -rw-r--r-- root/root 274 2011-10-18 11:09 ./usr/lib/pkgconfig/libmd.pc -rw-r--r-- root/root 290 2011-10-18 11:09 ./usr/lib/pkgconfig/libmd_d.pc -rw-r--r-- root/root 275 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmx_d.pc -rw-r--r-- root/root 260 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmx.pc -rw-r--r-- root/root 276 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmxana.pc -rw-r--r-- root/root 292 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmxpreprocess.pc -rw-r--r-- root/root 311 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmxpreprocess_d.pc -rw-r--r-- root/root 295 2011-10-18 11:09 ./usr/lib/pkgconfig/libgmxana_d.pc lrwxrwxrwx root/root 0 2011-10-18 11:56 ./usr/share/doc/gromacs-dev/changelog.Debian.gz -> ../gromacs/changelog.Debian.gz lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmx.so -> libgmx.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libmd_d.so -> libmd_d.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmx_d.so -> libgmx_d.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libmd_mpi_d.mpich.so -> libmd_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmx_mpi_d.mpich.so -> libgmx_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxpreprocess_d.so -> libgmxpreprocess_d.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxana.so -> libgmxana.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxpreprocess.so -> libgmxpreprocess.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libmd.so -> libmd.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmx_mpi.mpich.so -> libgmx_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxana_d.so -> libgmxana_d.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libmd_mpi.mpich.so -> libmd_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxpreprocess_mpi.mpich.so -> libgmxpreprocess_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so -> libgmxpreprocess_mpi_d.mpich.so.6 chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_armel.deb: drwxr-xr-x root/root 0 2011-10-18 11:55 ./ drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/ drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/share/man/ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/man/man1/ -rw-r--r-- root/root 6217 2011-10-18 11:54 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-18 11:54 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-10-18 11:08 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 1828 2011-10-18 11:08 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 1427 2011-10-18 11:52 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 2277 2011-10-18 11:56 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/bin/ -rwxr-xr-x root/root 121220 2011-10-18 11:55 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 121228 2011-10-18 11:55 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2011-10-18 11:55 ./usr/lib/ -rw-r--r-- root/root 318020 2011-10-18 11:55 ./usr/lib/libgmxpreprocess_mpi.mpich.so.6 -rw-r--r-- root/root 318064 2011-10-18 11:55 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -rw-r--r-- root/root 560012 2011-10-18 11:55 ./usr/lib/libmd_mpi.mpich.so.6 -rw-r--r-- root/root 1402216 2011-10-18 11:55 ./usr/lib/libgmx_mpi.mpich.so.6 -rw-r--r-- root/root 559992 2011-10-18 11:55 ./usr/lib/libmd_mpi_d.mpich.so.6 -rw-r--r-- root/root 1545556 2011-10-18 11:55 ./usr/lib/libgmx_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-18 11:55 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz gromacs_4.5.5-1_armel.changes: Format: 1.8 Date: Wed, 21 Sep 2011 19:10:08 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: armel Version: 4.5.5-1 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.5-1) unstable; urgency=low . * New upstream release. - Remove patches/30_git_release-4.5-patches.dpatch. - man/g_dos.1: Create man page for new binary. * rules: Add build-arch/build-indep targets. Add preliminary support for building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it. * patches/31_manpages.dpatch: Update. Checksums-Sha1: 1bf257e258eac340f16e1da17361c9a8ae8ab931 5032300 gromacs_4.5.5-1_armel.deb 54e6beb97d8ae9e681c8c22c9d06c08bbd2739b1 287552 gromacs-dev_4.5.5-1_armel.deb a347b1695d20df648afae3a712e682ed5ecad462 3162222 gromacs-mpich_4.5.5-1_armel.deb Checksums-Sha256: 4d6734b9ea17d2f53c8e37399d5d857f1847dd35dea9bc549f74f7b03f7972c1 5032300 gromacs_4.5.5-1_armel.deb 6564112de0d26a38b4e0cd75e3f8cce92b55b4347e3bbb97928e0983461ed4b7 287552 gromacs-dev_4.5.5-1_armel.deb 0bc43eeb1eabc59798157f0ffac1261766511664da5c39a17662ddd2e082ce0b 3162222 gromacs-mpich_4.5.5-1_armel.deb Files: 8ac6ca59052a0dcac222901697cd31d6 5032300 science extra gromacs_4.5.5-1_armel.deb 8bb4f2b1c8b8e910abcf5a92e0393bac 287552 devel extra gromacs-dev_4.5.5-1_armel.deb 03ca0b3ed16397a0e32ed97be174f600 3162222 science extra gromacs-mpich_4.5.5-1_armel.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.5 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libfftw3-dev x11-common libx11-dev libcroco3 x11proto-print-dev libxt-dev libpopt0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev xorg-sgml-doctools x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 cmake man-db libice6 x11proto-kb-dev intltool-debian libxp6 libfontconfig1-dev libxrender1 libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev gettext-base libxrender-dev libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 19294 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libxft-dev ... Removing libgsl0-dev ... Removing cmake ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libxt-dev ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing pkg-config ... Removing libxmlrpc-core-c3-0 ... Purging configuration files for libxmlrpc-core-c3-0 ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libx11-dev ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing xorg-sgml-doctools ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111018-1158 Build needed 00:48:27, 200920k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d'] Scanning for processes to kill in build /home/buildd/build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d'] Unmounting chroot for build b9d49a01902c94d9ca4a81da54970a03ae7ae65d... none /home/buildd/build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d/chroot-autobuild/dev/pts devpts rw,relatime,mode=600 0 0 none /home/buildd/build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-b9d49a01902c94d9ca4a81da54970a03ae7ae65d/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'b9d49a01902c94d9ca4a81da54970a03ae7ae65d'] Removing build b9d49a01902c94d9ca4a81da54970a03ae7ae65d