RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324', '/home/buildd/filecache-default/6afedd9cd2f1b8e8bab962dde18debc51de7acac'] Synching the system clock with the buildd NTP service... 18 Oct 21:48:53 ntpdate[25743]: adjust time server 10.211.37.1 offset 0.005915 sec Unpacking chroot for build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324'] Mounting chroot for build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324', 'i386'] Updating debian chroot for build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main i386 Packages [1230 kB] Get:4 http://ftpmaster.internal precise/universe i386 Packages [4506 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [74 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [75 B] Get:7 http://ftpmaster.internal precise/main Translation-en [703 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3202 kB] Fetched 9691 kB in 12s (764 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: liblockfile-bin libp11-kit0 The following packages will be upgraded: base-files binutils bzip2 coreutils cpp-4.6 dpkg dpkg-dev e2fslibs e2fsprogs fakeroot g++-4.6 gcc-4.6 gcc-4.6-base grep iproute libalgorithm-diff-xs-perl libbz2-1.0 libclass-isa-perl libcomerr2 libdbus-1-3 libdpkg-perl libffi6 libgcc1 libgcrypt11 libgmp10 libgmpxx4ldbl libgnutls26 libgomp1 libgpg-error0 libidn11 libkeyutils1 liblockfile1 liblzma2 libmpfr4 libncurses5 libncursesw5 libnih-dbus1 libnih1 libpcre3 libppl-c4 libppl9 libpwl5 libquadmath0 libreadline6 librtmp0 libselinux1 libslang2 libss2 libstdc++6 libstdc++6-4.6-dev libswitch-perl libtinfo5 libusb-0.1-4 lockfile-progs manpages manpages-dev ncurses-base ncurses-bin netbase python-minimal readline-common tzdata xz-utils 63 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 38.7 MB of archives. After this operation, 3387 kB disk space will be freed. WARNING: The following packages cannot be authenticated! base-files dpkg coreutils libcomerr2 e2fslibs e2fsprogs grep ncurses-bin ncurses-base python-minimal readline-common libncursesw5 libtinfo5 libncurses5 libreadline6 libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libquadmath0 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 libgmp10 libmpfr4 binutils libusb-0.1-4 bzip2 libbz2-1.0 liblzma2 libselinux1 libslang2 libss2 liblockfile1 liblockfile-bin libdbus-1-3 libffi6 libpcre3 libp11-kit0 libgnutls26 libgpg-error0 libgcrypt11 libidn11 libkeyutils1 libgmpxx4ldbl libppl-c4 libppl9 libpwl5 librtmp0 tzdata xz-utils lockfile-progs netbase iproute libnih-dbus1 libnih1 manpages dpkg-dev libdpkg-perl fakeroot libalgorithm-diff-xs-perl libclass-isa-perl libswitch-perl manpages-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main base-files i386 6.4ubuntu6 [56.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main dpkg i386 1.16.1ubuntu1 [1818 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main coreutils i386 8.13-3ubuntu1 [2516 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libcomerr2 i386 1.42~WIP-2011-10-09-1ubuntu1 [56.5 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main e2fslibs i386 1.42~WIP-2011-10-09-1ubuntu1 [199 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main e2fsprogs i386 1.42~WIP-2011-10-09-1ubuntu1 [899 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main grep i386 2.9-2 [244 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main ncurses-bin i386 5.9-2 [149 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main ncurses-base all 5.9-2 [21.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main python-minimal all 2.7.2-7ubuntu4 [29.8 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main readline-common all 6.2-7 [49.9 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libncursesw5 i386 5.9-2 [170 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libtinfo5 i386 5.9-2 [65.0 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libncurses5 i386 5.9-2 [142 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libreadline6 i386 6.2-7 [134 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 i386 4.6.1-15ubuntu1 [28.3 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base i386 4.6.1-15ubuntu1 [15.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 i386 4.6.1-15ubuntu1 [333 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 i386 4.6.1-15ubuntu1 [4650 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libquadmath0 i386 4.6.1-15ubuntu1 [195 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev i386 4.6.1-15ubuntu1 [1627 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 i386 4.6.1-15ubuntu1 [6781 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 i386 4.6.1-15ubuntu1 [7542 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 i386 1:4.6.1-15ubuntu1 [54.3 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libgmp10 i386 2:5.0.2+dfsg-1ubuntu1 [264 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main libmpfr4 i386 3.0.1-6 [188 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main binutils i386 2.21.90.20111004-2ubuntu1 [2385 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libusb-0.1-4 i386 2:0.1.12-19 [16.8 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main bzip2 i386 1.0.5-7 [37.2 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libbz2-1.0 i386 1.0.5-7 [33.9 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main liblzma2 i386 5.1.1alpha+20110809-2 [95.7 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libselinux1 i386 2.1.0-1 [65.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libslang2 i386 2.2.4-3ubuntu1 [500 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libss2 i386 1.42~WIP-2011-10-09-1ubuntu1 [61.2 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main liblockfile1 i386 1.09-3 [9072 B] Get:36 http://ftpmaster.internal/ubuntu/ precise/main liblockfile-bin i386 1.09-3 [12.3 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libdbus-1-3 i386 1.4.16-1ubuntu1 [148 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libffi6 i386 3.0.11~rc1-5 [16.4 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libpcre3 i386 8.12-4 [148 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 i386 0.6-0ubuntu2 [32.2 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 i386 2.12.11-1 [448 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libgpg-error0 i386 1.10-1ubuntu1 [14.5 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main libgcrypt11 i386 1.5.0-3 [281 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libidn11 i386 1.22-3 [111 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libkeyutils1 i386 1.5.2-2 [7716 B] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libgmpxx4ldbl i386 2:5.0.2+dfsg-1ubuntu1 [8650 B] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libppl-c4 i386 0.11.2-6ubuntu1 [1496 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main libppl9 i386 0.11.2-6ubuntu1 [443 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libpwl5 i386 0.11.2-6ubuntu1 [12.7 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main librtmp0 i386 2.4~20110711.gitc28f1bab-1 [57.7 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main tzdata i386 2011l-2 [401 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main xz-utils i386 5.1.1alpha+20110809-2 [87.8 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main lockfile-progs i386 0.1.16 [10.1 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main netbase all 4.46ubuntu1 [14.8 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main iproute i386 20110629-1 [421 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main libnih-dbus1 i386 1.0.3-4ubuntu3 [15.2 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main libnih1 i386 1.0.3-4ubuntu3 [53.4 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main manpages all 3.32-0.2ubuntu1 [577 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev all 1.16.1ubuntu1 [480 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl all 1.16.1ubuntu1 [180 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main fakeroot i386 1.18.1-1 [80.8 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main libalgorithm-diff-xs-perl i386 0.04-2 [14.2 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main libclass-isa-perl all 0.36-2 [11.7 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libswitch-perl all 2.16-2 [19.2 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main manpages-dev all 3.32-0.2ubuntu1 [1653 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.7 MB in 3s (11.1 MB/s) (Reading database ... 14145 files and directories currently installed.) Preparing to replace base-files 6.4ubuntu5 (using .../base-files_6.4ubuntu6_i386.deb) ... Unpacking replacement base-files ... Setting up base-files (6.4ubuntu6) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... (Reading database ... 14145 files and directories currently installed.) Preparing to replace dpkg 1.16.0.3ubuntu5 (using .../dpkg_1.16.1ubuntu1_i386.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1ubuntu1) ... (Reading database ... 14142 files and directories currently installed.) Preparing to replace coreutils 8.5-1ubuntu6 (using .../coreutils_8.13-3ubuntu1_i386.deb) ... Unpacking replacement coreutils ... Setting up coreutils (8.13-3ubuntu1) ... (Reading database ... 14142 files and directories currently installed.) Preparing to replace libcomerr2 1.41.14-1ubuntu3 (using .../libcomerr2_1.42~WIP-2011-10-09-1ubuntu1_i386.deb) ... Unpacking replacement libcomerr2 ... Setting up libcomerr2 (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14142 files and directories currently installed.) Preparing to replace e2fslibs 1.41.14-1ubuntu3 (using .../e2fslibs_1.42~WIP-2011-10-09-1ubuntu1_i386.deb) ... Unpacking replacement e2fslibs ... Setting up e2fslibs (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14142 files and directories currently installed.) Preparing to replace e2fsprogs 1.41.14-1ubuntu3 (using .../e2fsprogs_1.42~WIP-2011-10-09-1ubuntu1_i386.deb) ... Unpacking replacement e2fsprogs ... Setting up e2fsprogs (1.42~WIP-2011-10-09-1ubuntu1) ... Installing new version of config file /etc/mke2fs.conf ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace grep 2.9-1 (using .../archives/grep_2.9-2_i386.deb) ... Unpacking replacement grep ... Setting up grep (2.9-2) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace ncurses-bin 5.9-1ubuntu5 (using .../ncurses-bin_5.9-2_i386.deb) ... Unpacking replacement ncurses-bin ... Setting up ncurses-bin (5.9-2) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace ncurses-base 5.9-1ubuntu5 (using .../ncurses-base_5.9-2_all.deb) ... Unpacking replacement ncurses-base ... Setting up ncurses-base (5.9-2) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace python-minimal 2.7.2-7ubuntu2 (using .../python-minimal_2.7.2-7ubuntu4_all.deb) ... Unpacking replacement python-minimal ... Setting up python-minimal (2.7.2-7ubuntu4) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace readline-common 6.2-2ubuntu1 (using .../readline-common_6.2-7_all.deb) ... Unpacking replacement readline-common ... Setting up readline-common (6.2-7) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace libncursesw5 5.9-1ubuntu5 (using .../libncursesw5_5.9-2_i386.deb) ... Unpacking replacement libncursesw5 ... Preparing to replace libtinfo5 5.9-1ubuntu5 (using .../libtinfo5_5.9-2_i386.deb) ... Unpacking replacement libtinfo5 ... Setting up libtinfo5 (5.9-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libncurses5 5.9-1ubuntu5 (using .../libncurses5_5.9-2_i386.deb) ... Unpacking replacement libncurses5 ... Setting up libncurses5 (5.9-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libreadline6 6.2-2ubuntu1 (using .../libreadline6_6.2-7_i386.deb) ... Unpacking replacement libreadline6 ... Setting up libreadline6 (6.2-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libgomp1 4.6.1-9ubuntu3 (using .../libgomp1_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-9ubuntu3 (using .../gcc-4.6-base_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-15ubuntu1) ... (Reading database ... 14143 files and directories currently installed.) Preparing to replace libstdc++6 4.6.1-9ubuntu3 (using .../libstdc++6_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-9ubuntu3 (using .../cpp-4.6_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libquadmath0 4.6.1-9ubuntu3 (using .../libquadmath0_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement libquadmath0 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-9ubuntu3 (using .../libstdc++6-4.6-dev_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-9ubuntu3 (using .../g++-4.6_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-9ubuntu3 (using .../gcc-4.6_4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.1-9ubuntu3 (using .../libgcc1_1%3a4.6.1-15ubuntu1_i386.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libgmp10 2:5.0.1+dfsg-7ubuntu2 (using .../libgmp10_2%3a5.0.2+dfsg-1ubuntu1_i386.deb) ... Unpacking replacement libgmp10 ... Preparing to replace libmpfr4 3.0.1-5 (using .../libmpfr4_3.0.1-6_i386.deb) ... Unpacking replacement libmpfr4 ... Preparing to replace binutils 2.21.53.20110810-0ubuntu3 (using .../binutils_2.21.90.20111004-2ubuntu1_i386.deb) ... Unpacking replacement binutils ... Preparing to replace libusb-0.1-4 2:0.1.12-18 (using .../libusb-0.1-4_2%3a0.1.12-19_i386.deb) ... Unpacking replacement libusb-0.1-4 ... Setting up libusb-0.1-4 (2:0.1.12-19) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace bzip2 1.0.5-6ubuntu1 (using .../bzip2_1.0.5-7_i386.deb) ... Unpacking replacement bzip2 ... Preparing to replace libbz2-1.0 1.0.5-6ubuntu1 (using .../libbz2-1.0_1.0.5-7_i386.deb) ... Unpacking replacement libbz2-1.0 ... Setting up libbz2-1.0 (1.0.5-7) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace liblzma2 5.0.0-2 (using .../liblzma2_5.1.1alpha+20110809-2_i386.deb) ... Unpacking replacement liblzma2 ... Setting up liblzma2 (5.1.1alpha+20110809-2) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libselinux1 2.0.98-1.1 (using .../libselinux1_2.1.0-1_i386.deb) ... Unpacking replacement libselinux1 ... Setting up libselinux1 (2.1.0-1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libslang2 2.2.4-2ubuntu1 (using .../libslang2_2.2.4-3ubuntu1_i386.deb) ... Unpacking replacement libslang2 ... Setting up libslang2 (2.2.4-3ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace libss2 1.41.14-1ubuntu3 (using .../libss2_1.42~WIP-2011-10-09-1ubuntu1_i386.deb) ... Unpacking replacement libss2 ... Setting up libss2 (1.42~WIP-2011-10-09-1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14143 files and directories currently installed.) Preparing to replace liblockfile1 1.08-4 (using .../liblockfile1_1.09-3_i386.deb) ... Unpacking replacement liblockfile1 ... Selecting previously unselected package liblockfile-bin. Unpacking liblockfile-bin (from .../liblockfile-bin_1.09-3_i386.deb) ... Preparing to replace libdbus-1-3 1.4.14-1ubuntu1 (using .../libdbus-1-3_1.4.16-1ubuntu1_i386.deb) ... Unpacking replacement libdbus-1-3 ... Preparing to replace libffi6 3.0.11~rc1-2 (using .../libffi6_3.0.11~rc1-5_i386.deb) ... Unpacking replacement libffi6 ... Preparing to replace libpcre3 8.12-3ubuntu2 (using .../libpcre3_8.12-4_i386.deb) ... Unpacking replacement libpcre3 ... Selecting previously unselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.6-0ubuntu2_i386.deb) ... Preparing to replace libgnutls26 2.10.5-1ubuntu3 (using .../libgnutls26_2.12.11-1_i386.deb) ... Unpacking replacement libgnutls26 ... Preparing to replace libgpg-error0 1.10-0.3ubuntu1 (using .../libgpg-error0_1.10-1ubuntu1_i386.deb) ... Unpacking replacement libgpg-error0 ... Preparing to replace libgcrypt11 1.5.0-1 (using .../libgcrypt11_1.5.0-3_i386.deb) ... Unpacking replacement libgcrypt11 ... Preparing to replace libidn11 1.22-2 (using .../libidn11_1.22-3_i386.deb) ... Unpacking replacement libidn11 ... Preparing to replace libkeyutils1 1.4-6 (using .../libkeyutils1_1.5.2-2_i386.deb) ... Unpacking replacement libkeyutils1 ... Preparing to replace libgmpxx4ldbl 2:5.0.1+dfsg-7ubuntu2 (using .../libgmpxx4ldbl_2%3a5.0.2+dfsg-1ubuntu1_i386.deb) ... Unpacking replacement libgmpxx4ldbl ... Preparing to replace libppl-c4 0.11.2-3ubuntu1 (using .../libppl-c4_0.11.2-6ubuntu1_i386.deb) ... Unpacking replacement libppl-c4 ... Preparing to replace libppl9 0.11.2-3ubuntu1 (using .../libppl9_0.11.2-6ubuntu1_i386.deb) ... Unpacking replacement libppl9 ... Preparing to replace libpwl5 0.11.2-3ubuntu1 (using .../libpwl5_0.11.2-6ubuntu1_i386.deb) ... Unpacking replacement libpwl5 ... Preparing to replace librtmp0 2.3-2ubuntu1 (using .../librtmp0_2.4~20110711.gitc28f1bab-1_i386.deb) ... Unpacking replacement librtmp0 ... Preparing to replace tzdata 2011k-1 (using .../tzdata_2011l-2_i386.deb) ... Unpacking replacement tzdata ... Setting up tzdata (2011l-2) ... Current default time zone: 'Etc/UTC' Local time is now: Tue Oct 18 21:49:34 UTC 2011. Universal Time is now: Tue Oct 18 21:49:34 UTC 2011. Run 'dpkg-reconfigure tzdata' if you wish to change it. (Reading database ... 14149 files and directories currently installed.) Preparing to replace xz-utils 5.0.0-2 (using .../xz-utils_5.1.1alpha+20110809-2_i386.deb) ... Unpacking replacement xz-utils ... Setting up xz-utils (5.1.1alpha+20110809-2) ... (Reading database ... 14149 files and directories currently installed.) Preparing to replace lockfile-progs 0.1.15ubuntu1 (using .../lockfile-progs_0.1.16_i386.deb) ... Unpacking replacement lockfile-progs ... Preparing to replace netbase 4.45ubuntu3 (using .../netbase_4.46ubuntu1_all.deb) ... Unpacking replacement netbase ... Preparing to replace iproute 20110315-1build1 (using .../iproute_20110629-1_i386.deb) ... Unpacking replacement iproute ... Preparing to replace libnih-dbus1 1.0.3-4ubuntu2 (using .../libnih-dbus1_1.0.3-4ubuntu3_i386.deb) ... Unpacking replacement libnih-dbus1 ... Preparing to replace libnih1 1.0.3-4ubuntu2 (using .../libnih1_1.0.3-4ubuntu3_i386.deb) ... Unpacking replacement libnih1 ... Preparing to replace manpages 3.27-1ubuntu2 (using .../manpages_3.32-0.2ubuntu1_all.deb) ... Unpacking replacement manpages ... Preparing to replace dpkg-dev 1.16.0.3ubuntu5 (using .../dpkg-dev_1.16.1ubuntu1_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.0.3ubuntu5 (using .../libdpkg-perl_1.16.1ubuntu1_all.deb) ... Unpacking replacement libdpkg-perl ... Preparing to replace fakeroot 1.17-1 (using .../fakeroot_1.18.1-1_i386.deb) ... Unpacking replacement fakeroot ... Preparing to replace libalgorithm-diff-xs-perl 0.04-1build1 (using .../libalgorithm-diff-xs-perl_0.04-2_i386.deb) ... Unpacking replacement libalgorithm-diff-xs-perl ... Preparing to replace libclass-isa-perl 0.36-1 (using .../libclass-isa-perl_0.36-2_all.deb) ... Unpacking replacement libclass-isa-perl ... Preparing to replace libswitch-perl 2.16-1 (using .../libswitch-perl_2.16-2_all.deb) ... Unpacking replacement libswitch-perl ... Preparing to replace manpages-dev 3.27-1ubuntu2 (using .../manpages-dev_3.32-0.2ubuntu1_all.deb) ... Unpacking replacement manpages-dev ... Setting up libncursesw5 (5.9-2) ... Setting up libgomp1 (4.6.1-15ubuntu1) ... Setting up libgmp10 (2:5.0.2+dfsg-1ubuntu1) ... Setting up libmpfr4 (3.0.1-6) ... Setting up cpp-4.6 (4.6.1-15ubuntu1) ... Setting up libquadmath0 (4.6.1-15ubuntu1) ... Setting up binutils (2.21.90.20111004-2ubuntu1) ... Setting up gcc-4.6 (4.6.1-15ubuntu1) ... Setting up bzip2 (1.0.5-7) ... Setting up liblockfile-bin (1.09-3) ... Setting up liblockfile1 (1.09-3) ... Setting up libdbus-1-3 (1.4.16-1ubuntu1) ... Setting up libffi6 (3.0.11~rc1-5) ... Setting up libpcre3 (8.12-4) ... Setting up libp11-kit0 (0.6-0ubuntu2) ... Setting up libgpg-error0 (1.10-1ubuntu1) ... Setting up libgcrypt11 (1.5.0-3) ... Setting up libgnutls26 (2.12.11-1) ... Setting up libidn11 (1.22-3) ... Setting up libkeyutils1 (1.5.2-2) ... Setting up libgmpxx4ldbl (2:5.0.2+dfsg-1ubuntu1) ... Setting up libppl9 (0.11.2-6ubuntu1) ... Setting up libpwl5 (0.11.2-6ubuntu1) ... Setting up libppl-c4 (0.11.2-6ubuntu1) ... Setting up librtmp0 (2.4~20110711.gitc28f1bab-1) ... Setting up lockfile-progs (0.1.16) ... Setting up netbase (4.46ubuntu1) ... Installing new version of config file /etc/protocols ... Installing new version of config file /etc/services ... Setting up iproute (20110629-1) ... Setting up libnih1 (1.0.3-4ubuntu3) ... Setting up libnih-dbus1 (1.0.3-4ubuntu3) ... Setting up manpages (3.32-0.2ubuntu1) ... Setting up libdpkg-perl (1.16.1ubuntu1) ... Setting up dpkg-dev (1.16.1ubuntu1) ... Setting up fakeroot (1.18.1-1) ... Setting up libalgorithm-diff-xs-perl (0.04-2) ... Setting up libclass-isa-perl (0.36-2) ... Setting up libswitch-perl (2.16-2) ... Setting up manpages-dev (3.32-0.2ubuntu1) ... Setting up libstdc++6-4.6-dev (4.6.1-15ubuntu1) ... Setting up g++-4.6 (4.6.1-15ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324', 'i386', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '-A', '--purpose=PRIMARY', '--architecture=i386', '--comp=universe', 'gromacs_4.5.5-1.dsc'] Initiating build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324 with 2 processor cores. Automatic build of gromacs_4.5.5-1 on rothera by sbuild/i386 1.170.5 Build started at 20111018-2149 ****************************************************************************** gromacs_4.5.5-1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing libopenmpi-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev libopenmpi-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 35.5 MB of archives. After this operation, 125 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxrender1 libarchive1 libcurl3 x11-common libice6 libsm6 libxft2 libxp6 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base libxml2 man-db libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text libcroco3 libunistring0 gettext intltool-debian po-debconf debhelper dpatch lesstif2 libice-dev libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libnuma1 libtorque2 libxml2-dev openmpi-common libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 i386 2.0.1-7ubuntu3 [135 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 i386 2.4.4-2ubuntu1 [337 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core i386 2.33-2 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config i386 2.8.0-3ubuntu2 [44.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 i386 2.8.0-3ubuntu2 [125 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 i386 1.2.0-3 [25.7 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxau6 i386 1:1.0.6-3 [8258 B] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 i386 1:1.1.0-3 [12.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 i386 1.7-3 [44.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-data i386 2:1.4.4-2ubuntu1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 i386 2:1.4.4-2ubuntu1 [772 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libxext6 i386 2:1.3.0-3 [34.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 i386 1:0.9.6-2 [20.4 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libarchive1 i386 2.8.5-3 [127 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libcurl3 i386 7.21.6-3ubuntu3 [235 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main x11-common i386 1:7.6+7ubuntu7 [56.6 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libice6 i386 2:1.0.7-2 [44.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libsm6 i386 2:1.2.0-2 [17.6 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libxft2 i386 2.2.0-3ubuntu1 [42.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libxp6 i386 1:1.0.1-1 [17.7 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools i386 1:1.8-2 [10.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev i386 7.0.22-1 [299 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev i386 1:1.0.6-3 [10.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev i386 1:1.1.0-3 [43.9 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev i386 2.0.2-2ubuntu1 [69.0 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev i386 1.0.5-2 [27.6 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev i386 1.2.6-2 [82.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 i386 0.3-2.1 [3270 B] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev i386 0.3-2.1 [2490 B] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev i386 1.7-3 [77.9 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev i386 2:1.4.4-2ubuntu1 [3252 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev i386 7.2.0-3 [253 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev i386 2:1.3.0-3 [141 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libxp-dev i386 1:1.0.1-1 [83.3 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libxt6 i386 1:1.1.1-2 [180 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 i386 5.08-1 [218 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main file i386 5.08-1 [19.4 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 i386 1.16-1 [33.9 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils i386 8.2.3 [196 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main gettext-base i386 0.18.1.1-3ubuntu1 [56.6 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main groff-base i386 1.21-6 [1024 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libxml2 i386 2.7.8.dfsg-5 [662 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main man-db i386 2.6.0.2-2 [717 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libxmlrpc-core-c3-0 i386 1.16.32-0ubuntu4 [115 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main cmake-data all 2.8.5-1ubuntu1 [709 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main cmake i386 2.8.5-1ubuntu1 [4234 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main html2text i386 1.3.2a-15 [101 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 i386 0.6.2-1 [92.5 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 i386 0.9.3-4 [431 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main gettext i386 0.18.1.1-3ubuntu1 [1180 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu1 [212 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 8.9.8ubuntu1 [478 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main dpatch all 2.0.32 [53.6 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2 i386 1:0.95.2-1 [649 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main libice-dev i386 2:1.0.7-2 [128 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev i386 2:1.2.0-2 [86.4 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev i386 1:1.1.1-2 [472 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev i386 2:0.11.1-2 [20.1 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev i386 1:0.9.6-2 [27.7 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev i386 2.0.1-7ubuntu3 [211 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev i386 1:1.2.3.4.dfsg-3ubuntu3 [160 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev i386 2.4.4-2ubuntu1 [751 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main pkg-config i386 0.26-1ubuntu1 [40.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev i386 2.8.0-3ubuntu2 [652 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev i386 2.2.0-3ubuntu1 [51.7 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2-dev i386 1:0.95.2-1 [864 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/universe libcr0 i386 0.8.2-15ubuntu1 [19.0 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/universe libcr-dev i386 0.8.2-15ubuntu1 [29.4 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-3 i386 3.2.2-1ubuntu2 [1412 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-dev i386 3.2.2-1ubuntu2 [1938 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libgsl0ldbl i386 1.15+dfsg-1 [961 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libgsl0-dev i386 1.15+dfsg-1 [1241 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/universe libnuma1 i386 2.0.5-1 [18.9 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/universe libtorque2 i386 2.4.16+dfsg-1 [88.4 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/main libxml2-dev i386 2.7.8.dfsg-5 [761 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/universe openmpi-common all 1.4.3-2.1ubuntu1 [84.5 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/main libibverbs1 i386 1.1.5-1ubuntu1 [28.5 kB] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libibverbs-dev i386 1.1.5-1ubuntu1 [74.4 kB] Get:83 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-3 i386 1.4.1-1 [795 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-dev i386 1.4.1-1 [1031 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi1.3 i386 1.4.3-2.1ubuntu1 [1290 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi-dev i386 1.4.3-2.1ubuntu1 [2624 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 35.5 MB in 3s (10.8 MB/s) Selecting previously unselected package libexpat1. (Reading database ... 14162 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_i386.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2ubuntu1_i386.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_i386.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3ubuntu2_i386.deb) ... Selecting previously unselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3ubuntu2_i386.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_i386.deb) ... Selecting previously unselected package libxau6. Unpacking libxau6 (from .../libxau6_1%3a1.0.6-3_i386.deb) ... Selecting previously unselected package libxdmcp6. Unpacking libxdmcp6 (from .../libxdmcp6_1%3a1.1.0-3_i386.deb) ... Selecting previously unselected package libxcb1. Unpacking libxcb1 (from .../libxcb1_1.7-3_i386.deb) ... Selecting previously unselected package libx11-data. Unpacking libx11-data (from .../libx11-data_2%3a1.4.4-2ubuntu1_i386.deb) ... Selecting previously unselected package libx11-6. Unpacking libx11-6 (from .../libx11-6_2%3a1.4.4-2ubuntu1_i386.deb) ... Selecting previously unselected package libxext6. Unpacking libxext6 (from .../libxext6_2%3a1.3.0-3_i386.deb) ... Selecting previously unselected package libxrender1. Unpacking libxrender1 (from .../libxrender1_1%3a0.9.6-2_i386.deb) ... Selecting previously unselected package libarchive1. Unpacking libarchive1 (from .../libarchive1_2.8.5-3_i386.deb) ... Selecting previously unselected package libcurl3. Unpacking libcurl3 (from .../libcurl3_7.21.6-3ubuntu3_i386.deb) ... Selecting previously unselected package x11-common. Unpacking x11-common (from .../x11-common_1%3a7.6+7ubuntu7_i386.deb) ... Selecting previously unselected package libice6. Unpacking libice6 (from .../libice6_2%3a1.0.7-2_i386.deb) ... Selecting previously unselected package libsm6. Unpacking libsm6 (from .../libsm6_2%3a1.2.0-2_i386.deb) ... Selecting previously unselected package libxft2. Unpacking libxft2 (from .../libxft2_2.2.0-3ubuntu1_i386.deb) ... Selecting previously unselected package libxp6. Unpacking libxp6 (from .../libxp6_1%3a1.0.1-1_i386.deb) ... Selecting previously unselected package xorg-sgml-doctools. Unpacking xorg-sgml-doctools (from .../xorg-sgml-doctools_1%3a1.8-2_i386.deb) ... Selecting previously unselected package x11proto-core-dev. Unpacking x11proto-core-dev (from .../x11proto-core-dev_7.0.22-1_i386.deb) ... Selecting previously unselected package libxau-dev. Unpacking libxau-dev (from .../libxau-dev_1%3a1.0.6-3_i386.deb) ... Selecting previously unselected package libxdmcp-dev. Unpacking libxdmcp-dev (from .../libxdmcp-dev_1%3a1.1.0-3_i386.deb) ... Selecting previously unselected package x11proto-input-dev. Unpacking x11proto-input-dev (from .../x11proto-input-dev_2.0.2-2ubuntu1_i386.deb) ... Selecting previously unselected package x11proto-kb-dev. Unpacking x11proto-kb-dev (from .../x11proto-kb-dev_1.0.5-2_i386.deb) ... Selecting previously unselected package xtrans-dev. Unpacking xtrans-dev (from .../xtrans-dev_1.2.6-2_i386.deb) ... Selecting previously unselected package libpthread-stubs0. Unpacking libpthread-stubs0 (from .../libpthread-stubs0_0.3-2.1_i386.deb) ... Selecting previously unselected package libpthread-stubs0-dev. Unpacking libpthread-stubs0-dev (from .../libpthread-stubs0-dev_0.3-2.1_i386.deb) ... Selecting previously unselected package libxcb1-dev. Unpacking libxcb1-dev (from .../libxcb1-dev_1.7-3_i386.deb) ... Selecting previously unselected package libx11-dev. Unpacking libx11-dev (from .../libx11-dev_2%3a1.4.4-2ubuntu1_i386.deb) ... Setting up x11-common (1:7.6+7ubuntu7) ... invoke-rc.d: policy-rc.d denied execution of start. Selecting previously unselected package x11proto-print-dev. (Reading database ... 15804 files and directories currently installed.) Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-1_all.deb) ... Selecting previously unselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.2.0-3_i386.deb) ... Selecting previously unselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.3.0-3_i386.deb) ... Selecting previously unselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-1_i386.deb) ... Selecting previously unselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_i386.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.08-1_i386.deb) ... Selecting previously unselected package file. Unpacking file (from .../archives/file_5.08-1_i386.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1_i386.deb) ... Selecting previously unselected package bsdmainutils. Unpacking bsdmainutils (from .../bsdmainutils_8.2.3_i386.deb) ... Selecting previously unselected package gettext-base. Unpacking gettext-base (from .../gettext-base_0.18.1.1-3ubuntu1_i386.deb) ... Selecting previously unselected package groff-base. Unpacking groff-base (from .../groff-base_1.21-6_i386.deb) ... Selecting previously unselected package libxml2. Unpacking libxml2 (from .../libxml2_2.7.8.dfsg-5_i386.deb) ... Selecting previously unselected package man-db. Unpacking man-db (from .../man-db_2.6.0.2-2_i386.deb) ... Selecting previously unselected package libxmlrpc-core-c3-0. Unpacking libxmlrpc-core-c3-0 (from .../libxmlrpc-core-c3-0_1.16.32-0ubuntu4_i386.deb) ... Selecting previously unselected package emacsen-common. Unpacking emacsen-common (from .../emacsen-common_1.4.19ubuntu2_all.deb) ... Selecting previously unselected package cmake-data. Unpacking cmake-data (from .../cmake-data_2.8.5-1ubuntu1_all.deb) ... Selecting previously unselected package cmake. Unpacking cmake (from .../cmake_2.8.5-1ubuntu1_i386.deb) ... Selecting previously unselected package html2text. Unpacking html2text (from .../html2text_1.3.2a-15_i386.deb) ... Selecting previously unselected package libcroco3. Unpacking libcroco3 (from .../libcroco3_0.6.2-1_i386.deb) ... Selecting previously unselected package libunistring0. Unpacking libunistring0 (from .../libunistring0_0.9.3-4_i386.deb) ... Selecting previously unselected package gettext. Unpacking gettext (from .../gettext_0.18.1.1-3ubuntu1_i386.deb) ... Selecting previously unselected package intltool-debian. Unpacking intltool-debian (from .../intltool-debian_0.35.0+20060710.1_all.deb) ... Selecting previously unselected package po-debconf. Unpacking po-debconf (from .../po-debconf_1.0.16+nmu1_all.deb) ... Selecting previously unselected package debhelper. Unpacking debhelper (from .../debhelper_8.9.8ubuntu1_all.deb) ... Selecting previously unselected package dpatch. Unpacking dpatch (from .../archives/dpatch_2.0.32_all.deb) ... Selecting previously unselected package lesstif2. Unpacking lesstif2 (from .../lesstif2_1%3a0.95.2-1_i386.deb) ... Selecting previously unselected package libice-dev. Unpacking libice-dev (from .../libice-dev_2%3a1.0.7-2_i386.deb) ... Selecting previously unselected package libsm-dev. Unpacking libsm-dev (from .../libsm-dev_2%3a1.2.0-2_i386.deb) ... Selecting previously unselected package libxt-dev. Unpacking libxt-dev (from .../libxt-dev_1%3a1.1.1-2_i386.deb) ... Selecting previously unselected package x11proto-render-dev. Unpacking x11proto-render-dev (from .../x11proto-render-dev_2%3a0.11.1-2_i386.deb) ... Selecting previously unselected package libxrender-dev. Unpacking libxrender-dev (from .../libxrender-dev_1%3a0.9.6-2_i386.deb) ... Selecting previously unselected package libexpat1-dev. Unpacking libexpat1-dev (from .../libexpat1-dev_2.0.1-7ubuntu3_i386.deb) ... Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu3_i386.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.4-2ubuntu1_i386.deb) ... Selecting previously unselected package pkg-config. Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_i386.deb) ... Selecting previously unselected package libfontconfig1-dev. Unpacking libfontconfig1-dev (from .../libfontconfig1-dev_2.8.0-3ubuntu2_i386.deb) ... Selecting previously unselected package libxft-dev. Unpacking libxft-dev (from .../libxft-dev_2.2.0-3ubuntu1_i386.deb) ... Selecting previously unselected package lesstif2-dev. Unpacking lesstif2-dev (from .../lesstif2-dev_1%3a0.95.2-1_i386.deb) ... Selecting previously unselected package libcr0. Unpacking libcr0 (from .../libcr0_0.8.2-15ubuntu1_i386.deb) ... Selecting previously unselected package libcr-dev. Unpacking libcr-dev (from .../libcr-dev_0.8.2-15ubuntu1_i386.deb) ... Selecting previously unselected package libfftw3-3. Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1ubuntu2_i386.deb) ... Selecting previously unselected package libfftw3-dev. Unpacking libfftw3-dev (from .../libfftw3-dev_3.2.2-1ubuntu2_i386.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_i386.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg-1_i386.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_i386.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.16+dfsg-1_i386.deb) ... Selecting previously unselected package libxml2-dev. Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5_i386.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.3-2.1ubuntu1_all.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.5-1ubuntu1_i386.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.5-1ubuntu1_i386.deb) ... Selecting previously unselected package libmpich2-3. Unpacking libmpich2-3 (from .../libmpich2-3_1.4.1-1_i386.deb) ... Selecting previously unselected package libmpich2-dev. Unpacking libmpich2-dev (from .../libmpich2-dev_1.4.1-1_i386.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1ubuntu1_i386.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-2.1ubuntu1_i386.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-2ubuntu1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libpipeline1 (1.2.0-3) ... Setting up libxau6 (1:1.0.6-3) ... Setting up libxdmcp6 (1:1.1.0-3) ... Setting up libxcb1 (1.7-3) ... Setting up libx11-data (2:1.4.4-2ubuntu1) ... Setting up libx11-6 (2:1.4.4-2ubuntu1) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libarchive1 (2.8.5-3) ... Setting up libcurl3 (7.21.6-3ubuntu3) ... Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxft2 (2.2.0-3ubuntu1) ... Setting up libxp6 (1:1.0.1-1) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-3) ... Setting up libxdmcp-dev (1:1.1.0-3) ... Setting up x11proto-input-dev (2.0.2-2ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1) ... Setting up libpthread-stubs0-dev (0.3-2.1) ... Setting up libxcb1-dev (1.7-3) ... Setting up libx11-dev (2:1.4.4-2ubuntu1) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libmagic1 (5.08-1) ... Setting up file (5.08-1) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-3ubuntu1) ... Setting up groff-base (1.21-6) ... Setting up libxml2 (2.7.8.dfsg-5) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu4) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.5-1ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.5-1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4) ... Setting up gettext (0.18.1.1-3ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.8ubuntu1) ... Setting up dpatch (2.0.32) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-2ubuntu1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu2) ... Setting up libxft-dev (2.2.0-3ubuntu1) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1ubuntu2) ... Setting up libfftw3-dev (3.2.2-1ubuntu2) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.16+dfsg-1) ... Setting up libxml2-dev (2.7.8.dfsg-5) ... Setting up openmpi-common (1.4.3-2.1ubuntu1) ... Setting up libibverbs1 (1.1.5-1ubuntu1) ... Setting up libibverbs-dev (1.1.5-1ubuntu1) ... Setting up libmpich2-3 (1.4.1-1) ... Setting up libmpich2-dev (1.4.1-1) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-2.1ubuntu1) ... Setting up libopenmpi-dev (1.4.3-2.1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu5 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1ubuntu1 gcc-4.6_4.6.1-15ubuntu1 g++-4.6_4.6.1-15ubuntu1 binutils_2.21.90.20111004-2ubuntu1 libstdc++6-4.6-dev_4.6.1-15ubuntu1 libstdc++6_4.6.1-15ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Thu Sep 22 02:14:17 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.5-1.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.5 dpkg-source: info: unpacking gromacs_4.5.5.orig.tar.gz dpkg-source: info: applying gromacs_4.5.5-1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.5-1 dpkg-source --before-build gromacs-4.5.5 dpkg-buildpackage: host architecture i386 /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/i386-linux-gnu/libX11.so;/usr/lib/i386-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/i386-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_FORTRAN=OFF -DGMX_X11=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_FORTRAN=OFF -DGMX_X11=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Performing Test XFLAGS_SSE -- Performing Test XFLAGS_SSE - Success -- Performing Test XXFLAGS_SSE -- Performing Test XXFLAGS_SSE - Success -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j2 -C build/basic make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory 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`/build/buildd/gromacs-4.5.5/build/basic' [ 84%] Building C object src/kernel/CMakeFiles/g_luck.dir/g_luck.c.o Linking C executable g_luck make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 84%] Built target g_luck [ 85%] [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 85%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o Scanning dependencies of target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 85%] Building C object src/kernel/CMakeFiles/g_protonate.dir/g_protonate.c.o Linking C executable g_protonate [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 85%] Built target g_protonate [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dos.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_hydorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_densorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/powerspect.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/dens_filter.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/binsearch.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 86%] Building C object src/kernel/CMakeFiles/g_x2top.dir/g_x2top.c.o Linking C shared library libgmxana.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 86%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 86%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o Linking C executable g_x2top make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 86%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o Linking C executable gmxcheck Linking C executable gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Linking C executable grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Built target grompp [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o Linking C executable pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Built target pdb2gmx [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable do_dssp [ 89%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o [ 89%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_angle Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bond Linking C executable g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target g_bond Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_chi Linking C executable g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize Linking C executable g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_covar [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o [ 90%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar Linking C executable g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o [ 91%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density Linking C executable g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o [ 91%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densorder Linking C executable g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih Linking C executable g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] [ 91%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre Linking C executable g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_dos Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_gyrate Linking C executable g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_hbond Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Linking C executable g_helix Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_hydorder Linking C executable g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_kinetics Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Linking C executable g_lie Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_mdmat Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o [ 93%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed Linking C executable g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_morph [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_morph Linking C executable g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Linking C executable g_nmeig Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Scanning dependencies of target g_options Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_nmtraj Linking C executable g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_order Linking C executable g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o [ 95%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_polystat Linking C executable g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal Linking C executable g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf Linking C executable g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_rdf Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsdist Linking C executable g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf Linking C executable g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr Linking C executable g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_saltbr [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_select Built target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select Linking C executable g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_select Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Linking C executable g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient Linking C executable g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_sigeps [ 97%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_spatial Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] [ 97%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spol Linking C executable g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_traj Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Linking C executable g_tcaf Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Linking C executable g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Linking C executable g_tune_pme Linking C executable g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_velacc 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src/tools/CMakeFiles/gmxana.dir/gmx_velacc.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_helixorient.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_clustsize.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_mdmat.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wham.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target gmxcheck make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 83%] Building C object src/kernel/CMakeFiles/gmxcheck.dir/gmxcheck.c.o Linking C executable gmxcheck_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 83%] Built target gmxcheck [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/correl.c.o [ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_sham.c.o [ 83%] Building C object 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Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 85%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dos.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_hydorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_densorder.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/powerspect.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/dens_filter.c.o [ 86%] Building C object src/tools/CMakeFiles/gmxana.dir/binsearch.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target gmxdump make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Linking C shared library libgmxana_d.so Building C object src/kernel/CMakeFiles/gmxdump.dir/gmxdump.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target grompp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Building C object src/kernel/CMakeFiles/grompp.dir/grompp.c.o Linking C executable gmxdump_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o Linking C executable grompp_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o Scanning dependencies of target pdb2gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Building C object src/kernel/CMakeFiles/pdb2gmx.dir/pdb2gmx.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o Linking C executable pdb2gmx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target pdb2gmx [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 88%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [ 89%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/kernel/CMakeFiles/tpbconv.dir/tpbconv.c.o Linking C executable mdrun_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable tpbconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Linking C executable editconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable do_dssp_d Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_anaeig [ 89%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Linking C executable g_anaeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze_d Linking C executable g_anadock_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o Linking C executable g_angle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Linking C executable g_bond_d Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_chi_d Linking C executable g_cluster_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o [ 90%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize_d Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] [ 90%] Built target g_clustsize Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar_d Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_covar [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o [ 91%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density_d Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densorder_d Linking C executable g_dielectric_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_dielectric Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih_d Linking C executable g_dipoles_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Scanning dependencies of target g_disre Built target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre_d Linking C executable g_dist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_dist [ 91%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o [ 92%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dos_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_dos Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat_d Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_filter_d Linking C executable g_gyrate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_h2order Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_hbond_d Linking C executable g_h2order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_h2order Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o [ 93%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helix_d Linking C executable g_helixorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_helixorient Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Scanning dependencies of target g_kinetics Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_hydorder_d Linking C executable g_kinetics_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie_d Linking C executable g_mdmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Linking C executable g_membed_d Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_mindist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 94%] Built target g_mindist Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Linking C executable g_morph_d Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_msd Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmeig_d Linking C executable g_nmens_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_nmtraj_d Linking C executable g_options_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_options Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o [ 94%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_order_d Linking C executable g_pme_error_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o [ 95%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_polystat_d Linking C executable g_potential_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o [ 95%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal_d Linking C executable g_rama_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_principal Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf_d Linking C executable g_rms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] [ 95%] Built target g_rdf Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsdist_d Linking C executable g_rmsf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf_d Linking C executable g_rotmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_saltbr Built target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr_d Linking C executable g_sas_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] [ 96%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select_d Linking C executable g_sgangle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Linking C executable g_sham_d Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Linking C executable g_spatial_d Linking C executable g_spol_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tcaf [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_traj Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Linking C executable g_tcaf_d Linking C executable g_traj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Linking C executable g_tune_pme_d Linking C executable g_vanhove_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_wham Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o Linking C executable g_wham_d Linking C executable g_velacc_d make[3]: Leaving directory 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/build/buildd/gromacs-4.5.5/src/mdlib/pme.c:2085:32: warning: assignment makes integer from pointer without a cast [enabled by default] /build/buildd/gromacs-4.5.5/src/mdlib/pme.c:2095:32: warning: assignment makes integer from pointer without a cast [enabled by default] Linking C shared library libmd_mpi.mpich.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 92%] [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 92%] Building C object 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make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 92%] [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o [ 92%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_bond_atomtype.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/h_db.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hackblock.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hizzie.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/nm2type.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pdb2top.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pgutil.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readir.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readpull.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/resall.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/sorting.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 96%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian touch build-openmpi /usr/bin/fakeroot debian/rules binary dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 59%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 61%] Built target g_xrama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 63%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 74%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 74%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 74%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 74%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 74%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] [ 87%] Built target grompp Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 87%] [ 89%] Built target pdb2gmx Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] [ 89%] Built target do_dssp Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] [ 89%] Built target g_anadock Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] [ 89%] Built target g_analyze Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target g_bundle Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target g_confrms Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_dih [ 91%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] [ 91%] Built target g_disre Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dyndom [ 92%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_h2order [ 92%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_helix [ 93%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_hydorder Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_lie Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rdf [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_spol [ 97%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] [ 97%] Built target g_traj Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_wheel [ 98%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Built target genconf Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Built target genrestr Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 59%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 61%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 63%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 74%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 74%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 74%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 74%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 74%] Built target gmxcheck [ 86%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 87%] Built target gmxdump [ 87%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_cluster [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_confrms [ 90%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_densorder [ 91%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_dih [ 91%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_dist [ 91%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_dyndom Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_energy Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_h2order Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_helix [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_hydorder Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_lie [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 94%] Built target g_msd Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] [ 94%] Built target g_nmeig Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] [ 94%] Built target g_nmtraj Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] [ 95%] Built target g_potential Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] [ 95%] Built target g_rama Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_saltbr [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_tcaf [ 97%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_velacc Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target g_wheel Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target genconf Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target mk_angndx Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target trjconv Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps [100%] Built target trjorder make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a1.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexwat-ferguson.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/residuetypes.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ca-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx2.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ps.m2p -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/elements.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ethanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/random.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/bonds.dlg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/electroneg.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/dgsolv.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a5.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-12.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa-n.tst -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sw.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/gb.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnabonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tips3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/cmap.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/surface.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/f3c.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spce.itp -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/make_ndx.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genconf.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_polystat.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genion.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rmsf.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_dipoles.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rama.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_select.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rms.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rmsdist.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_*.1 for manpage in /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d # two lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j2 -C build/openmpi install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' /usr/bin/make -j2 -C build/openmpi-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 80%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 92%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs dh_testdir dh_testroot dh_installchangelogs -i dh_installdocs -pgromacs-data dh_compress -i dh_fixperms -i dh_installdeb -i dh_gencontrol -i dh_md5sums -i dh_builddeb -i INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-data/DEBIAN/control, package gromacs-data, directory debian/gromacs-data pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-data/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-data' in `../gromacs-data_4.5.5-1_all.deb'. dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform i386: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring gromacs-openmpi is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 104 INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.5-1_i386.deb'. INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.5-1_i386.deb'. pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records Skipping arch: any to arch: all dependency to gromacs-data dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.5-1_i386.deb'. INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-data/DEBIAN/control, package gromacs-data, directory ./debian/gromacs-data pkgstriptranslations: gromacs-data does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-openmpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-openmpi' in `../gromacs-openmpi_4.5.5-1_i386.deb'. dpkg-genchanges -b -mUbuntu/i386 Build Daemon >../gromacs_4.5.5-1_i386.changes dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.5 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111018-2212 chroot-autobuild/build/buildd/gromacs-data_4.5.5-1_all.deb: new debian package, version 2.0. size 1862262 bytes: control archive= 17091 bytes. 1123 bytes, 28 lines control 60694 bytes, 784 lines md5sums Package: gromacs-data Source: gromacs Version: 4.5.5-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8323 Recommends: gromacs Suggests: tcsh | c-shell Conflicts: gromacs-doc Breaks: gromacs (<< 3.3.3-1) Replaces: gromacs-doc Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, data and documentation GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains architecture-independent topology and force field data, documentation, man pages, and example files. chroot-autobuild/build/buildd/gromacs_4.5.5-1_i386.deb: new debian package, version 2.0. size 5498594 bytes: control archive= 6321 bytes. 1194 bytes, 26 lines control 10783 bytes, 206 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.5-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 13432 Depends: gromacs-data (= 4.5.5-1), libc6 (>= 2.11), libfftw3-3, libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.5-1_i386.deb: new debian package, version 2.0. size 286656 bytes: control archive= 7225 bytes. 1274 bytes, 27 lines control 14289 bytes, 215 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.5-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1433 Depends: gromacs (= 4.5.5-1), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.5-1) | gromacs-openmpi (= 4.5.5-1), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_i386.deb: new debian package, version 2.0. size 3558834 bytes: control archive= 2233 bytes. 1200 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.5-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8255 Depends: libc6 (>= 2.11), libfftw3-3, libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs-openmpi_4.5.5-1_i386.deb: new debian package, version 2.0. size 3559706 bytes: control archive= 2266 bytes. 1241 bytes, 28 lines control 932 bytes, 13 lines md5sums 1820 bytes, 58 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh 246 bytes, 6 lines shlibs Package: gromacs-openmpi Source: gromacs Version: 4.5.5-1 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8259 Depends: libc6 (>= 2.11), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. 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g_current.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_density_d.1.gz -> g_density.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_densmap_d.1.gz -> g_densmap.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_wheel_d.1.gz -> g_wheel.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/tpbconv_d.1.gz -> tpbconv.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_dos_d.1.gz -> g_dos.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_dipoles_d.1.gz -> g_dipoles.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_dist_d.1.gz -> g_dist.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_lie_d.1.gz -> g_lie.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_dyndom_d.1.gz -> g_dyndom.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_energy_d.1.gz -> g_energy.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_gyrate_d.1.gz -> g_gyrate.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_h2order_d.1.gz -> g_h2order.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_msd_d.1.gz -> g_msd.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_helixorient_d.1.gz -> g_helixorient.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_options_d.1.gz -> g_options.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_kinetics_d.1.gz -> g_kinetics.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_luck_d.1.gz -> g_luck.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_membed_d.1.gz -> g_membed.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_mindist_d.1.gz -> g_mindist.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rama_d.1.gz -> g_rama.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_nmeig_d.1.gz -> g_nmeig.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_nmens_d.1.gz -> g_nmens.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_nmtraj_d.1.gz -> g_nmtraj.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rms_d.1.gz -> g_rms.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/mdrun_d.1.gz -> mdrun.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_tcaf_d.1.gz -> g_tcaf.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_x2top_d.1.gz -> g_x2top.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_bundle_d.1.gz -> g_bundle.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_angle_d.1.gz -> g_angle.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_morph_d.1.gz -> g_morph.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_helix_d.1.gz -> g_helix.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/trjconv_d.1.gz -> trjconv.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rmsdist_d.1.gz -> g_rmsdist.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rmsf_d.1.gz -> g_rmsf.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rotmat_d.1.gz -> g_rotmat.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/trjcat_d.1.gz -> trjcat.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_sham_d.1.gz -> g_sham.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_sigeps_d.1.gz -> g_sigeps.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_sgangle_d.1.gz -> g_sgangle.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_sorient_d.1.gz -> g_sorient.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_spatial_d.1.gz -> g_spatial.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_spol_d.1.gz -> g_spol.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_tune_pme_d.1.gz -> g_tune_pme.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_vanhove_d.1.gz -> g_vanhove.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_velacc_d.1.gz -> g_velacc.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_hbond_d.1.gz -> g_hbond.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_principal_d.1.gz -> g_principal.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_xrama_d.1.gz -> g_xrama.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/genbox_d.1.gz -> genbox.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/genion_d.1.gz -> genion.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/genrestr_d.1.gz -> genrestr.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/gmxdump_d.1.gz -> gmxdump.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/grompp_d.1.gz -> grompp.1.gz lrwxrwxrwx 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./usr/share/man/man1/g_traj_d.1.gz -> g_traj.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_densorder_d.1.gz -> g_densorder.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_covar_d.1.gz -> g_covar.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_protonate_d.1.gz -> g_protonate.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_hydorder_d.1.gz -> g_hydorder.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/editconf_d.1.gz -> editconf.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_rotacf_d.1.gz -> g_rotacf.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_polystat_d.1.gz -> g_polystat.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_filter_d.1.gz -> g_filter.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_enemat_d.1.gz -> g_enemat.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_clustsize_d.1.gz -> g_clustsize.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_pme_error_d.1.gz -> g_pme_error.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/xpm2ps_d.1.gz -> xpm2ps.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/eneconv_d.1.gz -> eneconv.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_saltbr_d.1.gz -> g_saltbr.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_disre_d.1.gz -> g_disre.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/g_mdmat_d.1.gz -> g_mdmat.1.gz lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/make_ndx_d.1.gz -> make_ndx.1.gz chroot-autobuild/build/buildd/gromacs_4.5.5-1_i386.deb: drwxr-xr-x root/root 0 2011-10-18 22:11 ./ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/ drwxr-xr-x root/root 0 2011-10-18 22:10 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/doc/gromacs/ 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2011-10-18 22:11 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz chroot-autobuild/build/buildd/gromacs-openmpi_4.5.5-1_i386.deb: drwxr-xr-x root/root 0 2011-10-18 22:11 ./ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/bin/ -rwxr-xr-x root/root 166272 2011-10-18 22:11 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 158096 2011-10-18 22:11 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/man/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/man/man1/ -rw-r--r-- root/root 6218 2011-10-18 22:11 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2011-10-18 21:50 ./usr/share/lintian/overrides/gromacs-openmpi drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/share/doc/gromacs-openmpi/ -rw-r--r-- root/root 1435 2011-10-18 22:10 ./usr/share/doc/gromacs-openmpi/README.Debian -rw-r--r-- root/root 1828 2011-10-18 21:50 ./usr/share/doc/gromacs-openmpi/copyright -rw-r--r-- root/root 2279 2011-10-18 22:12 ./usr/share/doc/gromacs-openmpi/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-18 22:11 ./usr/lib/ -rw-r--r-- root/root 2536796 2011-10-18 22:11 ./usr/lib/libgmx_mpi.openmpi.so.6 -rw-r--r-- root/root 969504 2011-10-18 22:11 ./usr/lib/libmd_mpi.openmpi.so.6 -rw-r--r-- root/root 452688 2011-10-18 22:11 ./usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -rw-r--r-- root/root 2749756 2011-10-18 22:11 ./usr/lib/libgmx_mpi_d.openmpi.so.6 -rw-r--r-- root/root 912128 2011-10-18 22:11 ./usr/lib/libmd_mpi_d.openmpi.so.6 -rw-r--r-- root/root 444544 2011-10-18 22:11 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-18 22:11 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_4.5.5-1_i386.changes: Format: 1.8 Date: Wed, 21 Sep 2011 19:10:08 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: all i386 Version: 4.5.5-1 Distribution: precise Urgency: low Maintainer: Ubuntu/i386 Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.5-1) unstable; urgency=low . * New upstream release. - Remove patches/30_git_release-4.5-patches.dpatch. - man/g_dos.1: Create man page for new binary. * rules: Add build-arch/build-indep targets. Add preliminary support for building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it. * patches/31_manpages.dpatch: Update. Checksums-Sha1: 1290f52fbb9f6c5edeba0a8314f3bed853dd49d0 1862262 gromacs-data_4.5.5-1_all.deb 317c51444d424cb416adb3af11a48940e7403503 5498594 gromacs_4.5.5-1_i386.deb aac2510e1b687f49f98d1738a188c738236e245b 286656 gromacs-dev_4.5.5-1_i386.deb ef715d3057fc6c2aa6c2608eaaa46137de681466 3558834 gromacs-mpich_4.5.5-1_i386.deb 2189c94a773d0308ca49282a5f4a6bf8a1a96407 3559706 gromacs-openmpi_4.5.5-1_i386.deb Checksums-Sha256: 13f7b7a1e6f25072910a3ac58964330b376d181026edc6a4775589ae5292c3e9 1862262 gromacs-data_4.5.5-1_all.deb f9d02ec26c22528ac5af91568b4d5642a387836f9b0ca84918ee532f8aa4ba0f 5498594 gromacs_4.5.5-1_i386.deb 3e4068e83a2af451dc73dd543e922496883a5195ebdf3ff35a976603ba26766d 286656 gromacs-dev_4.5.5-1_i386.deb a755d478f227ddb35652290fcd274c6fd8383fef86f8c681b10e20f445f162dc 3558834 gromacs-mpich_4.5.5-1_i386.deb f079fb3365a4c75c1c3c223503f50d8ced86be89a4e323aee270861f0f123b49 3559706 gromacs-openmpi_4.5.5-1_i386.deb Files: b4ff163371f4087c86475a6fe6c8938c 1862262 science extra gromacs-data_4.5.5-1_all.deb 12b61d910667ef3beed2b2e445ad31f9 5498594 science extra gromacs_4.5.5-1_i386.deb bdf4d82d07f2b783e6010c4bbe19b6c9 286656 devel extra gromacs-dev_4.5.5-1_i386.deb 4641b5c4a78ec1d5d0931340dafb2b78 3558834 science extra gromacs-mpich_4.5.5-1_i386.deb a8936c14df1e7b23416fb9059ee79c91 3559706 science extra gromacs-openmpi_4.5.5-1_i386.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.5 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libibverbs-dev libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libibverbs1 libfftw3-dev x11-common libx11-dev libcroco3 libopenmpi1.3 x11proto-print-dev libxt-dev libpopt0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils openmpi-common libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libtorque2 xorg-sgml-doctools x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libopenmpi-dev libnuma1 libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev libxrender-dev gettext-base libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 20302 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libopenmpi-dev ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing libibverbs-dev ... Removing gettext ... Removing file ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing libopenmpi1.3 ... Purging configuration files for libopenmpi1.3 ... Removing libxt-dev ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing openmpi-common ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libtorque2 ... Purging configuration files for libtorque2 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing libnuma1 ... Purging configuration files for libnuma1 ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing pkg-config ... Removing libxmlrpc-core-c3-0 ... Purging configuration files for libxmlrpc-core-c3-0 ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libibverbs1 ... Purging configuration files for libibverbs1 ... Removing libx11-dev ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing xorg-sgml-doctools ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111018-2212 Build needed 00:21:47, 289064k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324'] Scanning for processes to kill in build /home/buildd/build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324'] Unmounting chroot for build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324... none /home/buildd/build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324/chroot-autobuild/dev/pts devpts rw,relatime 0 0 none /home/buildd/build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-c9b0fc5ad0b73d2c0ed6130c910f25568fba6324/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'c9b0fc5ad0b73d2c0ed6130c910f25568fba6324'] Removing build c9b0fc5ad0b73d2c0ed6130c910f25568fba6324