RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1', '/home/buildd/filecache-default/ae10d4f56684bfa9d24ade2bcf83271f973d3afa'] Synching the system clock with the buildd NTP service... 21 Oct 05:25:31 ntpdate[28542]: adjust time server 10.211.37.1 offset 0.000034 sec Unpacking chroot for build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1'] Mounting chroot for build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1', 'powerpc'] Updating debian chroot for build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1 Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Get:3 http://ftpmaster.internal precise/main powerpc Packages [1239 kB] Get:4 http://ftpmaster.internal precise/universe powerpc Packages [4446 kB] Get:5 http://ftpmaster.internal precise/main TranslationIndex [74 B] Get:6 http://ftpmaster.internal precise/universe TranslationIndex [75 B] Get:7 http://ftpmaster.internal precise/main Translation-en [715 kB] Get:8 http://ftpmaster.internal precise/universe Translation-en [3227 kB] Fetched 9677 kB in 11s (811 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages will be upgraded: binutils cpp-4.6 dpkg dpkg-dev g++-4.6 gcc-4.6 gcc-4.6-base libcurl3-gnutls libdpkg-perl libgcc1 libgomp1 libgssapi-krb5-2 libk5crypto3 libkrb5-3 libkrb5support0 libp11-kit0 libstdc++6 libstdc++6-4.6-dev 18 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 23.8 MB of archives. After this operation, 2737 kB disk space will be freed. WARNING: The following packages cannot be authenticated! dpkg libgomp1 gcc-4.6-base libstdc++6 cpp-4.6 libstdc++6-4.6-dev g++-4.6 gcc-4.6 libgcc1 binutils libk5crypto3 libgssapi-krb5-2 libkrb5-3 libkrb5support0 libcurl3-gnutls libp11-kit0 dpkg-dev libdpkg-perl Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main dpkg powerpc 1.16.1ubuntu2 [1804 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libgomp1 powerpc 4.6.1-16ubuntu1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6-base powerpc 4.6.1-16ubuntu1 [15.9 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6 powerpc 4.6.1-16ubuntu1 [364 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main cpp-4.6 powerpc 4.6.1-16ubuntu1 [4618 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libstdc++6-4.6-dev powerpc 4.6.1-16ubuntu1 [1646 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main g++-4.6 powerpc 4.6.1-16ubuntu1 [6111 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main gcc-4.6 powerpc 4.6.1-16ubuntu1 [5168 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libgcc1 powerpc 1:4.6.1-16ubuntu1 [42.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main binutils powerpc 2.21.90.20111019-2ubuntu1 [2529 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 powerpc 1.9.1+dfsg-1ubuntu2.1 [89.1 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 powerpc 1.9.1+dfsg-1ubuntu2.1 [111 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 powerpc 1.9.1+dfsg-1ubuntu2.1 [347 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 powerpc 1.9.1+dfsg-1ubuntu2.1 [22.7 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls powerpc 7.21.7-3ubuntu1 [224 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 powerpc 0.7-2 [31.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main dpkg-dev all 1.16.1ubuntu2 [480 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libdpkg-perl all 1.16.1ubuntu2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 23.8 MB in 2s (11.4 MB/s) (Reading database ... 14061 files and directories currently installed.) Preparing to replace dpkg 1.16.1ubuntu1 (using .../dpkg_1.16.1ubuntu2_powerpc.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.16.1ubuntu2) ... (Reading database ... 14061 files and directories currently installed.) Preparing to replace libgomp1 4.6.1-15ubuntu1 (using .../libgomp1_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement libgomp1 ... Preparing to replace gcc-4.6-base 4.6.1-15ubuntu1 (using .../gcc-4.6-base_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.6-base ... Setting up gcc-4.6-base (4.6.1-16ubuntu1) ... (Reading database ... 14061 files and directories currently installed.) Preparing to replace libstdc++6 4.6.1-15ubuntu1 (using .../libstdc++6_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6 ... Setting up libstdc++6 (4.6.1-16ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14061 files and directories currently installed.) Preparing to replace cpp-4.6 4.6.1-15ubuntu1 (using .../cpp-4.6_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement cpp-4.6 ... Preparing to replace libstdc++6-4.6-dev 4.6.1-15ubuntu1 (using .../libstdc++6-4.6-dev_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement libstdc++6-4.6-dev ... Preparing to replace g++-4.6 4.6.1-15ubuntu1 (using .../g++-4.6_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement g++-4.6 ... Preparing to replace gcc-4.6 4.6.1-15ubuntu1 (using .../gcc-4.6_4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement gcc-4.6 ... Preparing to replace libgcc1 1:4.6.1-15ubuntu1 (using .../libgcc1_1%3a4.6.1-16ubuntu1_powerpc.deb) ... Unpacking replacement libgcc1 ... Setting up libgcc1 (1:4.6.1-16ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place (Reading database ... 14061 files and directories currently installed.) Preparing to replace binutils 2.21.90.20111004-2ubuntu1 (using .../binutils_2.21.90.20111019-2ubuntu1_powerpc.deb) ... Unpacking replacement binutils ... Preparing to replace libk5crypto3 1.9.1+dfsg-1ubuntu1 (using .../libk5crypto3_1.9.1+dfsg-1ubuntu2.1_powerpc.deb) ... Unpacking replacement libk5crypto3 ... Preparing to replace libgssapi-krb5-2 1.9.1+dfsg-1ubuntu1 (using .../libgssapi-krb5-2_1.9.1+dfsg-1ubuntu2.1_powerpc.deb) ... Unpacking replacement libgssapi-krb5-2 ... Preparing to replace libkrb5-3 1.9.1+dfsg-1ubuntu1 (using .../libkrb5-3_1.9.1+dfsg-1ubuntu2.1_powerpc.deb) ... Unpacking replacement libkrb5-3 ... Preparing to replace libkrb5support0 1.9.1+dfsg-1ubuntu1 (using .../libkrb5support0_1.9.1+dfsg-1ubuntu2.1_powerpc.deb) ... Unpacking replacement libkrb5support0 ... Preparing to replace libcurl3-gnutls 7.21.6-3ubuntu3 (using .../libcurl3-gnutls_7.21.7-3ubuntu1_powerpc.deb) ... Unpacking replacement libcurl3-gnutls ... Preparing to replace libp11-kit0 0.6-0ubuntu2 (using .../libp11-kit0_0.7-2_powerpc.deb) ... Unpacking replacement libp11-kit0 ... Preparing to replace dpkg-dev 1.16.1ubuntu1 (using .../dpkg-dev_1.16.1ubuntu2_all.deb) ... Unpacking replacement dpkg-dev ... Preparing to replace libdpkg-perl 1.16.1ubuntu1 (using .../libdpkg-perl_1.16.1ubuntu2_all.deb) ... Unpacking replacement libdpkg-perl ... Setting up libgomp1 (4.6.1-16ubuntu1) ... Setting up cpp-4.6 (4.6.1-16ubuntu1) ... Setting up binutils (2.21.90.20111019-2ubuntu1) ... Setting up gcc-4.6 (4.6.1-16ubuntu1) ... Setting up libkrb5support0 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libk5crypto3 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libkrb5-3 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-1ubuntu2.1) ... Setting up libcurl3-gnutls (7.21.7-3ubuntu1) ... Setting up libp11-kit0 (0.7-2) ... Setting up libdpkg-perl (1.16.1ubuntu2) ... Setting up dpkg-dev (1.16.1ubuntu2) ... Setting up libstdc++6-4.6-dev (4.6.1-16ubuntu1) ... Setting up g++-4.6 (4.6.1-16ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1', 'powerpc', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=powerpc', '--comp=universe', 'gromacs_4.5.5-1.dsc'] Initiating build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1 with 2 processor cores. Automatic build of gromacs_4.5.5-1 on ross by sbuild/powerpc 1.170.5 Build started at 20111021-0526 ****************************************************************************** gromacs_4.5.5-1.dsc exists in cwd sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) sh: gcc: not found dpkg-architecture: warning: Couldn't determine gcc system type, falling back to default (native compilation) Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing libopenmpi-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev libopenmpi-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libnuma1 libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libcr-dev libcr0 libcroco3 libcurl3 libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgettextpo0 libgsl0-dev libgsl0ldbl libibverbs-dev libibverbs1 libice-dev libice6 libmagic1 libmpich2-3 libmpich2-dev libnuma1 libopenmpi-dev libopenmpi1.3 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libsm-dev libsm6 libtorque2 libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3-0 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openmpi-common pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 37.3 MB of archives. After this operation, 128 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libxrender1 libarchive1 libcurl3 libcroco3 libunistring0 libgettextpo0 x11-common libice6 libsm6 libxft2 libxp6 xorg-sgml-doctools x11proto-core-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-print-dev x11proto-xext-dev libxext-dev libxp-dev libxt6 libmagic1 file libpopt0 bsdmainutils gettext-base groff-base man-db libxmlrpc-core-c3-0 emacsen-common cmake-data cmake html2text gettext intltool-debian po-debconf debhelper dpatch lesstif2 libice-dev libsm-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libnuma1 libtorque2 libxml2-dev openmpi-common libibverbs1 libibverbs-dev libmpich2-3 libmpich2-dev libopenmpi1.3 libopenmpi-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 powerpc 2.0.1-7ubuntu3 [136 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 powerpc 2.4.4-2ubuntu1 [312 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core powerpc 2.33-2 [1550 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config powerpc 2.8.0-3ubuntu2 [44.5 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 powerpc 2.8.0-3ubuntu2 [122 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 powerpc 1.2.0-3 [25.6 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libxau6 powerpc 1:1.0.6-3 [8142 B] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 powerpc 1:1.1.0-3 [12.4 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 powerpc 1.7-3 [37.2 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libx11-data powerpc 2:1.4.4-2ubuntu1 [172 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 powerpc 2:1.4.4-2ubuntu1 [740 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libxext6 powerpc 2:1.3.0-3 [31.8 kB] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libxml2 powerpc 2.7.8.dfsg-5ubuntu1 [619 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 powerpc 1:0.9.6-2 [20.0 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libarchive1 powerpc 2.8.5-3 [124 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libcurl3 powerpc 7.21.7-3ubuntu1 [233 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 powerpc 0.6.2-1 [98.4 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 powerpc 0.9.3-4ubuntu1 [409 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 powerpc 0.18.1.1-5ubuntu1 [114 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main x11-common powerpc 1:7.6+7ubuntu7 [56.6 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libice6 powerpc 2:1.0.7-2 [42.7 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libsm6 powerpc 2:1.2.0-2 [16.9 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libxft2 powerpc 2.2.0-3ubuntu1 [41.9 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libxp6 powerpc 1:1.0.1-1 [16.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools powerpc 1:1.8-2 [10.9 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev powerpc 7.0.22-1 [299 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev powerpc 1:1.0.6-3 [9968 B] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev powerpc 1:1.1.0-3 [44.5 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev powerpc 2.0.2-2ubuntu1 [69.0 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev powerpc 1.0.5-2 [27.6 kB] Get:32 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev powerpc 1.2.6-2 [82.9 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 powerpc 0.3-2.1 [3272 B] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev powerpc 0.3-2.1 [2420 B] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev powerpc 1.7-3 [74.6 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev powerpc 2:1.4.4-2ubuntu1 [3196 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev all 1.0.5-1 [10.6 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev powerpc 7.2.0-3 [253 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev powerpc 2:1.3.0-3 [140 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libxp-dev powerpc 1:1.0.1-1 [82.7 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libxt6 powerpc 1:1.1.1-2 [170 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 powerpc 5.09-1 [224 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main file powerpc 5.09-1 [22.9 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 powerpc 1.16-1 [36.4 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils powerpc 8.2.3 [197 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main gettext-base powerpc 0.18.1.1-5ubuntu1 [57.3 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main groff-base powerpc 1.21-6 [1044 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main man-db powerpc 2.6.0.2-2 [721 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libxmlrpc-core-c3-0 powerpc 1.16.32-0ubuntu4 [106 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main emacsen-common all 1.4.19ubuntu2 [17.7 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main cmake-data all 2.8.5-1ubuntu1 [709 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main cmake powerpc 2.8.5-1ubuntu1 [4281 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main html2text powerpc 1.3.2a-15 [106 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main gettext powerpc 0.18.1.1-5ubuntu1 [1132 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main po-debconf all 1.0.16+nmu1 [212 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main debhelper all 8.9.8ubuntu1 [478 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main dpatch all 2.0.32 [53.6 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2 powerpc 1:0.95.2-1 [673 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main libice-dev powerpc 2:1.0.7-2 [130 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev powerpc 2:1.2.0-2 [87.5 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev powerpc 1:1.1.1-2 [477 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev powerpc 2:0.11.1-2 [20.1 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev powerpc 1:0.9.6-2 [26.9 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev powerpc 2.0.1-7ubuntu3 [269 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev powerpc 1:1.2.3.4.dfsg-3ubuntu3 [163 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev powerpc 2.4.4-2ubuntu1 [742 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main pkg-config powerpc 0.26-1ubuntu1 [40.1 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev powerpc 2.8.0-3ubuntu2 [656 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev powerpc 2.2.0-3ubuntu1 [53.7 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2-dev powerpc 1:0.95.2-1 [951 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/universe libcr0 powerpc 0.8.2-15ubuntu1 [20.2 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/universe libcr-dev powerpc 0.8.2-15ubuntu1 [29.4 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-3 powerpc 3.2.2-1ubuntu2 [2238 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-dev powerpc 3.2.2-1ubuntu2 [2672 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libgsl0ldbl powerpc 1.15+dfsg-1 [1034 kB] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libgsl0-dev powerpc 1.15+dfsg-1 [1266 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/universe libnuma1 powerpc 2.0.5-1 [20.2 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/universe libtorque2 powerpc 2.4.15+dfsg-1 [89.6 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main libxml2-dev powerpc 2.7.8.dfsg-5ubuntu1 [788 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/universe openmpi-common all 1.4.3-2.1ubuntu1 [84.5 kB] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libibverbs1 powerpc 1.1.5-1ubuntu1 [26.5 kB] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libibverbs-dev powerpc 1.1.5-1ubuntu1 [75.0 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-3 powerpc 1.4-1 [795 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-dev powerpc 1.4-1 [1120 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi1.3 powerpc 1.4.3-2.1ubuntu1 [1254 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise/universe libopenmpi-dev powerpc 1.4.3-2.1ubuntu1 [2561 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 37.3 MB in 3s (9901 kB/s) Selecting previously unselected package libexpat1. (Reading database ... 14063 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7ubuntu3_powerpc.deb) ... Selecting previously unselected package libfreetype6. Unpacking libfreetype6 (from .../libfreetype6_2.4.4-2ubuntu1_powerpc.deb) ... Selecting previously unselected package ucf. Unpacking ucf (from .../ucf_3.0025+nmu2ubuntu1_all.deb) ... Moving old data out of the way Selecting previously unselected package ttf-dejavu-core. Unpacking ttf-dejavu-core (from .../ttf-dejavu-core_2.33-2_powerpc.deb) ... Selecting previously unselected package fontconfig-config. Unpacking fontconfig-config (from .../fontconfig-config_2.8.0-3ubuntu2_powerpc.deb) ... Selecting previously unselected package libfontconfig1. Unpacking libfontconfig1 (from .../libfontconfig1_2.8.0-3ubuntu2_powerpc.deb) ... Selecting previously unselected package libpipeline1. Unpacking libpipeline1 (from .../libpipeline1_1.2.0-3_powerpc.deb) ... 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Unpacking x11proto-print-dev (from .../x11proto-print-dev_1.0.5-1_all.deb) ... Selecting previously unselected package x11proto-xext-dev. Unpacking x11proto-xext-dev (from .../x11proto-xext-dev_7.2.0-3_powerpc.deb) ... Selecting previously unselected package libxext-dev. Unpacking libxext-dev (from .../libxext-dev_2%3a1.3.0-3_powerpc.deb) ... Selecting previously unselected package libxp-dev. Unpacking libxp-dev (from .../libxp-dev_1%3a1.0.1-1_powerpc.deb) ... Selecting previously unselected package libxt6. Unpacking libxt6 (from .../libxt6_1%3a1.1.1-2_powerpc.deb) ... Selecting previously unselected package libmagic1. Unpacking libmagic1 (from .../libmagic1_5.09-1_powerpc.deb) ... Selecting previously unselected package file. Unpacking file (from .../file_5.09-1_powerpc.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1_powerpc.deb) ... Selecting previously unselected package bsdmainutils. 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Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_powerpc.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg-1_powerpc.deb) ... Selecting previously unselected package libnuma1. Unpacking libnuma1 (from .../libnuma1_2.0.5-1_powerpc.deb) ... Selecting previously unselected package libtorque2. Unpacking libtorque2 (from .../libtorque2_2.4.15+dfsg-1_powerpc.deb) ... Selecting previously unselected package libxml2-dev. Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5ubuntu1_powerpc.deb) ... Selecting previously unselected package openmpi-common. Unpacking openmpi-common (from .../openmpi-common_1.4.3-2.1ubuntu1_all.deb) ... Selecting previously unselected package libibverbs1. Unpacking libibverbs1 (from .../libibverbs1_1.1.5-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libibverbs-dev. Unpacking libibverbs-dev (from .../libibverbs-dev_1.1.5-1ubuntu1_powerpc.deb) ... Selecting previously unselected package libmpich2-3. Unpacking libmpich2-3 (from .../libmpich2-3_1.4-1_powerpc.deb) ... Selecting previously unselected package libmpich2-dev. Unpacking libmpich2-dev (from .../libmpich2-dev_1.4-1_powerpc.deb) ... Selecting previously unselected package libopenmpi1.3. Unpacking libopenmpi1.3 (from .../libopenmpi1.3_1.4.3-2.1ubuntu1_powerpc.deb) ... Selecting previously unselected package libopenmpi-dev. Unpacking libopenmpi-dev (from .../libopenmpi-dev_1.4.3-2.1ubuntu1_powerpc.deb) ... Setting up libexpat1 (2.0.1-7ubuntu3) ... Setting up libfreetype6 (2.4.4-2ubuntu1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libpipeline1 (1.2.0-3) ... Setting up libxau6 (1:1.0.6-3) ... Setting up libxdmcp6 (1:1.1.0-3) ... Setting up libxcb1 (1.7-3) ... Setting up libx11-data (2:1.4.4-2ubuntu1) ... Setting up libx11-6 (2:1.4.4-2ubuntu1) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libarchive1 (2.8.5-3) ... Setting up libcurl3 (7.21.7-3ubuntu1) ... Setting up libcroco3 (0.6.2-1) ... Setting up libunistring0 (0.9.3-4ubuntu1) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu1) ... Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxft2 (2.2.0-3ubuntu1) ... Setting up libxp6 (1:1.0.1-1) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libxau-dev (1:1.0.6-3) ... Setting up libxdmcp-dev (1:1.1.0-3) ... Setting up x11proto-input-dev (2.0.2-2ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1) ... Setting up libpthread-stubs0-dev (0.3-2.1) ... Setting up libxcb1-dev (1.7-3) ... Setting up libx11-dev (2:1.4.4-2ubuntu1) ... Setting up x11proto-print-dev (1.0.5-1) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up libxp-dev (1:1.0.1-1) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libmagic1 (5.09-1) ... Setting up file (5.09-1) ... Setting up libpopt0 (1.16-1) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu1) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-2) ... Building database of manual pages ... Setting up libxmlrpc-core-c3-0 (1.16.32-0ubuntu4) ... Setting up emacsen-common (1.4.19ubuntu2) ... emacsen-common: Handling install of emacsen flavor emacs install-info: warning: maintainer scripts should not call install-info anymore, install-info: warning: this is handled now by a dpkg trigger provided by the install-info: warning: install-info package; package emacsen-common should be updated. Setting up cmake-data (2.8.5-1ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.5-1ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1) ... Setting up debhelper (8.9.8ubuntu1) ... Setting up dpatch (2.0.32) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libexpat1-dev (2.0.1-7ubuntu3) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu3) ... Setting up libfreetype6-dev (2.4.4-2ubuntu1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu2) ... Setting up libxft-dev (2.2.0-3ubuntu1) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu1) ... Setting up libcr-dev (0.8.2-15ubuntu1) ... Setting up libfftw3-3 (3.2.2-1ubuntu2) ... Setting up libfftw3-dev (3.2.2-1ubuntu2) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libnuma1 (2.0.5-1) ... Setting up libtorque2 (2.4.15+dfsg-1) ... Setting up libxml2-dev (2.7.8.dfsg-5ubuntu1) ... Setting up openmpi-common (1.4.3-2.1ubuntu1) ... Setting up libibverbs1 (1.1.5-1ubuntu1) ... Setting up libibverbs-dev (1.1.5-1ubuntu1) ... Setting up libmpich2-3 (1.4-1) ... Setting up libmpich2-dev (1.4-1) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Setting up libopenmpi1.3 (1.4.3-2.1ubuntu1) ... Setting up libopenmpi-dev (1.4.3-2.1ubuntu1) ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu5 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1ubuntu2 gcc-4.6_4.6.1-16ubuntu1 g++-4.6_4.6.1-16ubuntu1 binutils_2.21.90.20111019-2ubuntu1 libstdc++6-4.6-dev_4.6.1-16ubuntu1 libstdc++6_4.6.1-16ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Thu Sep 22 02:14:17 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.5-1.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.5 dpkg-source: info: unpacking gromacs_4.5.5.orig.tar.gz dpkg-source: info: applying gromacs_4.5.5-1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.5-1 dpkg-source --before-build gromacs-4.5.5 dpkg-buildpackage: host architecture powerpc /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so -- Looking for XOpenDisplay in /usr/lib/powerpc-linux-gnu/libX11.so;/usr/lib/powerpc-linux-gnu/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/powerpc-linux-gnu/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich-dp (mkdir -p build/openmpi; cd build/openmpi; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_FORTRAN=OFF -DGMX_X11=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DGMX_BINARY_SUFFIX="_mpi.openmpi" -DGMX_LIBS_SUFFIX="_mpi.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.openmpi" -- Using manually set library suffix: "_mpi.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/openmpi (mkdir -p build/openmpi-dp; cd build/openmpi-dp; CC=/usr/bin/mpicc.openmpi cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_FORTRAN=OFF -DGMX_X11=OFF -DCMAKE_EXE_LINKER_FLAGS="-L/usr/lib/openmpi/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.openmpi" -DGMX_LIBS_SUFFIX="_mpi_d.openmpi") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.openmpi -- Check for working C compiler: /usr/bin/mpicc.openmpi -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.openmpi" -- Using manually set library suffix: "_mpi_d.openmpi" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - big endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/powerpc-linux-gnu/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (BE byte, BE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/openmpi-dp touch configure-stamp dh_testdir /usr/bin/make -j2 -C build/basic make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target gmx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_system_xdr.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/replace.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_asc.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/rmpbc.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/shift_util.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/string2.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/nrjac.c.o [ 1%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmxfio_rw.c.o [ 1%] Building C object 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Building C object src/tools/CMakeFiles/gmxana.dir/gmx_xpm2ps.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_editconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genbox.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genion.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genconf.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_genpr.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_eneconv.c.o [ 88%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_vanhove.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_wheel.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/addconf.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/calcpot.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/edittop.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dos.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_hydorder.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_densorder.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/powerspect.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/dens_filter.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/binsearch.c.o Linking C shared library libgmxana.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable do_dssp Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Linking C executable g_anaeig Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bond Linking C executable g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bundle [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Linking C executable g_chi Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize Linking C executable g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar Linking C executable g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_current Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density Linking C executable g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densorder Linking C executable g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dielectric [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih Linking C executable g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre Linking C executable g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dist Scanning dependencies of target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dos Linking C executable g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dos [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_enemat Linking C executable g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Built target g_enemat Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] [ 93%] Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_filter Linking C executable g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_hbond Linking C executable g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o [ 94%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helix Linking C executable g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] [ 94%] Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_kinetics Linking C executable g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_kinetics [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o [ 95%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie Linking C executable g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_membed [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed Linking C executable g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mindist [ 95%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_morph Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_sas [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_sgangle Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial Linking C executable g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_spol Linking C executable g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Built target g_tcaf Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] [ 99%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_traj Linking C executable g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_velacc [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o [ 99%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_vanhove Linking C executable g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_wham Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable genbox Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 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make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bar Linking C executable g_bond_d make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_chi_d Linking C executable g_cluster_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Linking C executable g_clustsize_d Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Linking C executable g_covar_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Linking C executable g_density_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o Linking C executable g_densorder_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_dielectric_d [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dih_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_dipoles_d Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_disre_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_dist_d Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o Linking C executable g_dos_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_dyndom_d [ 93%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Linking C executable g_enemat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Linking C executable g_energy_d Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Linking C executable g_filter_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_filter Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Linking C executable g_gyrate_d Linking C executable g_h2order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] [ 94%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_hbond_d Linking C executable g_helix_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o Linking C executable g_helixorient_d Linking C executable g_hydorder_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Linking C executable g_kinetics_d Linking C executable g_lie_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] [ 95%] Built target g_lie Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_mdmat_d Linking C executable g_membed_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o [ 95%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Linking C executable g_mindist_d Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o Linking C executable g_morph_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Linking C executable g_msd_d Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o Linking C executable g_nmeig_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Linking C executable g_nmens_d Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o Linking C executable g_nmtraj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_options_d [ 96%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o Linking C executable g_order_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_pme_error_d [ 96%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_polystat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Linking C executable g_potential_d Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Linking C executable g_principal_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rama_d Linking C executable g_rdf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Linking C executable g_rms_d Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rmsdist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o [ 97%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Linking C executable g_rmsf_d Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rotacf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o [ 97%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_rotmat_d [ 97%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_saltbr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_sas_d Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_select_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_sgangle_d Scanning dependencies of target g_sham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Linking C executable g_sham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o Linking C executable g_spatial_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spatial [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o Linking C executable g_tcaf_d Linking C executable g_spol_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target g_spol Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] [ 99%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o Linking C executable g_traj_d Linking C executable g_tune_pme_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o [ 99%] Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o Linking C executable g_vanhove_d Linking C executable g_velacc_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_velacc Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o Linking C executable g_wham_d Linking C executable g_wheel_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genbox [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o [ 99%] Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o Linking C executable genbox_d Linking C executable genconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/genion.dir/genion.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Linking C executable genion_d Linking C executable genrestr_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target mk_angndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/mk_angndx.dir/mk_angndx.c.o Linking C executable mk_angndx_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjcat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/trjcat.dir/trjcat.c.o Linking C executable trjcat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/trjconv.dir/trjconv.c.o Linking C executable make_ndx_d Linking C executable trjconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/trjorder.dir/trjorder.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target xpm2ps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable trjorder_d [100%] Building C object src/tools/CMakeFiles/xpm2ps.dir/xpm2ps.c.o Linking C executable xpm2ps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target trjorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' touch build-basic dh_testdir /usr/bin/make -j2 -C build/mpich mdrun make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target gmx make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 0%] [ 0%] Building C object src/gmxlib/CMakeFiles/gmx.dir/gmx_system_xdr.c.o Building C object src/gmxlib/CMakeFiles/gmx.dir/replace.c.o [ 0%] Building C 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without a cast [enabled by default] Linking C shared library libmd_mpi.mpich.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 90%] [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o [ 93%] Building C 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Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_mpi_d.openmpi.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] [ 97%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' sed -e 's/#MPIABBR#/openmpi/g' -e 's/#MPIPROG#/OpenMPI/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-openmpi.README.Debian touch build-openmpi /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_protonate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target do_dssp Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] [ 90%] Built target eneconv Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bar [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bundle [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] [ 91%] Built target g_cluster Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] [ 91%] Built target g_confrms Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_current [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_densmap [ 92%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helix [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_order [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_potential Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 96%] Built target g_principal Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rdf [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_select [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_velacc [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] [ 99%] Built target g_wheel Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] [ 99%] Built target genconf Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] [ 99%] Built target mk_angndx Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjorder [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target gmxana [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target tpbconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dyndom [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_energy [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mdmat [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rmsdist [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rotacf Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target g_spatial Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 99%] Built target g_tcaf Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] [ 99%] Built target g_vanhove Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjcat [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] [ 99%] Built target trjconv Built target trjorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/dna.r2b -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a1.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexwat-ferguson.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/residuetypes.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ca-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx2.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ps.m2p -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/elements.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ethanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/random.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/make_ndx.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genconf.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_polystat.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genion.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rmsf.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_dipoles.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rama.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_select.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rms.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rmsdist.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_*.1 for manpage in /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d # two lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_installdirs -pgromacs-openmpi /usr/bin/make -j2 -C build/openmpi install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/bin/mdrun_mpi.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi' /usr/bin/make -j2 -C build/openmpi-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-openmpi make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmx_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libmd_mpi_d.openmpi.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/libgmxpreprocess_mpi_d.openmpi.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/bin/mdrun_mpi_d.openmpi make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/openmpi-dp' dh_installman -pgromacs-openmpi debian/man/mdrun_mpi.openmpi.1 dh_link -pgromacs-openmpi usr/share/man/man1/mdrun_mpi.openmpi.1.gz usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz dh_lintian -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-openmpi/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform powerpc: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich gromacs-openmpi dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring gromacs-openmpi is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_shlibdeps -pgromacs-openmpi -L gromacs-openmpi -l debian/gromacs-openmpi/usr/lib dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 104 INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs pkgstripfiles: Truncating changelog to topmost ten records grep: ../gromacs-data/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency gromacs-data... dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.5-1_powerpc.deb'. pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev pkgstripfiles: Truncating changelog to topmost ten records Searching for duplicated docs in dependency gromacs... dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.5-1_powerpc.deb'. INFO: pkgstriptranslations version 104 INFO: pkgstriptranslations version 104 pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.5-1_powerpc.deb'. pkgstriptranslations: processing control file: ./debian/gromacs/DEBIAN/control, package gromacs, directory ./debian/gromacs pkgstriptranslations: gromacs does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory ./debian/gromacs-mpich pkgstriptranslations: gromacs-mpich does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory ./debian/gromacs-openmpi pkgstriptranslations: gromacs-openmpi does not contain translations, skipping pkgstriptranslations: processing control file: ./debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory ./debian/gromacs-dev pkgstriptranslations: gromacs-dev does not contain translations, skipping pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-openmpi/DEBIAN/control, package gromacs-openmpi, directory debian/gromacs-openmpi pkgstripfiles: Truncating changelog to topmost ten records dpkg-deb: warning: 'debian/gromacs-openmpi/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-openmpi' in `../gromacs-openmpi_4.5.5-1_powerpc.deb'. dpkg-genchanges -B -mUbuntu/powerpc Build Daemon >../gromacs_4.5.5-1_powerpc.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.5 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111021-0554 chroot-autobuild/build/buildd/gromacs_4.5.5-1_powerpc.deb: new debian package, version 2.0. size 5499336 bytes: control archive= 6304 bytes. 1196 bytes, 26 lines control 10783 bytes, 206 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.5-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 11310 Depends: gromacs-data (= 4.5.5-1), libc6 (>= 2.7), libfftw3-3, libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.5-1_powerpc.deb: new debian package, version 2.0. size 289754 bytes: control archive= 7264 bytes. 1277 bytes, 27 lines control 14369 bytes, 216 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.5-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1433 Depends: gromacs (= 4.5.5-1), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.5-1) | gromacs-openmpi (= 4.5.5-1), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_powerpc.deb: new debian package, version 2.0. size 3503890 bytes: control archive= 2239 bytes. 1202 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.5-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 6480 Depends: libc6 (>= 2.7), libfftw3-3, libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs-openmpi_4.5.5-1_powerpc.deb: new debian package, version 2.0. size 3504552 bytes: control archive= 2266 bytes. 1243 bytes, 28 lines control 932 bytes, 13 lines md5sums 1820 bytes, 58 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 322 bytes, 22 lines * prerm #!/bin/sh 246 bytes, 6 lines shlibs Package: gromacs-openmpi Source: gromacs Version: 4.5.5-1 Architecture: powerpc Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 6480 Depends: libc6 (>= 2.7), libfftw3-3, libopenmpi1.3, libxml2 (>= 2.7.4), openmpi-bin (>= 1.2.3) Recommends: gromacs Suggests: gromacs-data Replaces: gromacs-lam Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for OpenMPI parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the OpenMPI interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs_4.5.5-1_powerpc.deb: drwxr-xr-x root/root 0 2011-10-21 05:53 ./ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/ drwxr-xr-x root/root 0 2011-10-21 05:51 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 3993 2011-10-21 05:28 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 203 2011-09-21 12:34 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 2583 2011-10-21 05:28 ./usr/share/doc/gromacs/README.Debian -rw-r--r-- root/root 1828 2011-10-21 05:28 ./usr/share/doc/gromacs/copyright -rw-r--r-- root/root 2276 2011-10-21 05:54 ./usr/share/doc/gromacs/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2011-10-21 05:28 ./usr/share/lintian/overrides/gromacs drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/lib/ -rw-r--r-- root/root 1993088 2011-10-21 05:53 ./usr/lib/libgmx.so.6 -rw-r--r-- root/root 768876 2011-10-21 05:53 ./usr/lib/libmd.so.6 -rw-r--r-- root/root 420200 2011-10-21 05:53 ./usr/lib/libgmxpreprocess.so.6 -rw-r--r-- root/root 1457708 2011-10-21 05:53 ./usr/lib/libgmxana.so.6 -rw-r--r-- root/root 2070928 2011-10-21 05:53 ./usr/lib/libgmx_d.so.6 -rw-r--r-- root/root 756568 2011-10-21 05:53 ./usr/lib/libmd_d.so.6 -rw-r--r-- root/root 420244 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_d.so.6 -rw-r--r-- root/root 1451624 2011-10-21 05:53 ./usr/lib/libgmxana_d.so.6 drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/bin/ -rwxr-xr-x root/root 145900 2011-10-21 05:53 ./usr/bin/mdrun -rwxr-xr-x root/root 38948 2011-10-21 05:53 ./usr/bin/grompp -rwxr-xr-x root/root 22200 2011-10-21 05:53 ./usr/bin/tpbconv -rwxr-xr-x root/root 46952 2011-10-21 05:53 ./usr/bin/pdb2gmx -rwxr-xr-x root/root 9692 2011-10-21 05:53 ./usr/bin/g_protonate -rwxr-xr-x root/root 5452 2011-10-21 05:53 ./usr/bin/g_luck -rwxr-xr-x root/root 18024 2011-10-21 05:53 ./usr/bin/gmxdump -rwxr-xr-x root/root 22344 2011-10-21 05:53 ./usr/bin/g_x2top -rwxr-xr-x root/root 26348 2011-10-21 05:53 ./usr/bin/gmxcheck -rwxr-xr-x root/root 22128 2011-10-21 05:53 ./usr/bin/do_dssp -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/editconf -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/eneconv -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genbox -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genconf -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genrestr -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_nmtraj -rwxr-xr-x root/root 30296 2011-10-21 05:53 ./usr/bin/make_ndx -rwxr-xr-x root/root 9708 2011-10-21 05:53 ./usr/bin/mk_angndx -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/trjcat -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/trjconv -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/trjorder -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_wheel -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/xpm2ps -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genion -rwxr-xr-x root/root 13840 2011-10-21 05:53 ./usr/bin/g_anadock -rwxr-xr-x root/root 26464 2011-10-21 05:53 ./usr/bin/make_edi -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_analyze -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_anaeig -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_angle -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_bond -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_bundle -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_chi -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_cluster -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_confrms -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_covar -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_current -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_density -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_densmap -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dih -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dielectric -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_helixorient -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_principal -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dipoles -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_disre -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dist -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dyndom -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_enemat -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_energy -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_lie -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_filter -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_gyrate -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_h2order -rwxr-xr-x root/root 5428 2011-10-21 05:53 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-rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sas -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_select -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sgangle -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sham -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sorient -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_spol -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_spatial -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_tcaf -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_traj -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_tune_pme -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_vanhove -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_velacc -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_clustsize -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_mdmat -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_wham -rwxr-xr-x root/root 9680 2011-10-21 05:53 ./usr/bin/g_sigeps -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_bar -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_membed -rwxr-xr-x root/root 3378 2011-09-21 12:34 ./usr/bin/demux -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_rmsdist -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_rotmat -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_options -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dos -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_hydorder -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_densorder -rwxr-xr-x root/root 107180 2011-10-21 05:53 ./usr/bin/ngmx -rwxr-xr-x root/root 106964 2011-10-21 05:53 ./usr/bin/g_xrama -rwxr-xr-x root/root 8127 2011-09-21 12:34 ./usr/bin/xplor2gmx -rwxr-xr-x root/root 145900 2011-10-21 05:53 ./usr/bin/mdrun_d -rwxr-xr-x root/root 38956 2011-10-21 05:53 ./usr/bin/grompp_d -rwxr-xr-x root/root 22212 2011-10-21 05:53 ./usr/bin/tpbconv_d -rwxr-xr-x root/root 46988 2011-10-21 05:53 ./usr/bin/pdb2gmx_d -rwxr-xr-x root/root 9692 2011-10-21 05:53 ./usr/bin/g_protonate_d -rwxr-xr-x root/root 5452 2011-10-21 05:53 ./usr/bin/g_luck_d -rwxr-xr-x root/root 18024 2011-10-21 05:53 ./usr/bin/gmxdump_d -rwxr-xr-x root/root 22504 2011-10-21 05:53 ./usr/bin/g_x2top_d -rwxr-xr-x root/root 26372 2011-10-21 05:53 ./usr/bin/gmxcheck_d -rwxr-xr-x root/root 22128 2011-10-21 05:53 ./usr/bin/do_dssp_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/editconf_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/eneconv_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genbox_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genconf_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/genrestr_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_nmtraj_d -rwxr-xr-x root/root 30296 2011-10-21 05:53 ./usr/bin/make_ndx_d -rwxr-xr-x root/root 9716 2011-10-21 05:53 ./usr/bin/mk_angndx_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/trjcat_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 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2011-10-21 05:53 ./usr/bin/g_current_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_density_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_densmap_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dih_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dielectric_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_helixorient_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_principal_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dipoles_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_disre_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dist_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dyndom_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_enemat_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_energy_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_lie_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_filter_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 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2011-10-21 05:53 ./usr/bin/g_rmsf_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_rotacf_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_saltbr_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sas_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_select_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sgangle_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sham_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_sorient_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_spol_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_spatial_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_tcaf_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_traj_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_tune_pme_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_vanhove_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_velacc_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_clustsize_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_mdmat_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_wham_d -rwxr-xr-x root/root 9724 2011-10-21 05:53 ./usr/bin/g_sigeps_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_bar_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_membed_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_rmsdist_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_rotmat_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_options_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_dos_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_hydorder_d -rwxr-xr-x root/root 5428 2011-10-21 05:53 ./usr/bin/g_densorder_d -rwxr-xr-x root/root 107308 2011-10-21 05:53 ./usr/bin/ngmx_d -rwxr-xr-x root/root 107084 2011-10-21 05:53 ./usr/bin/g_xrama_d chroot-autobuild/build/buildd/gromacs-dev_4.5.5-1_powerpc.deb: drwxr-xr-x root/root 0 2011-10-21 05:53 ./ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/ drwxr-xr-x 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lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess.so -> libgmxpreprocess.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_d.so -> libgmxpreprocess_d.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd.so -> libmd.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd_d.so -> libmd_d.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmx_mpi.mpich.so -> libgmx_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmx_mpi_d.mpich.so -> libgmx_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi.mpich.so -> libgmxpreprocess_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so -> libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd_mpi.mpich.so -> libmd_mpi.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd_mpi_d.mpich.so -> libmd_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmx_mpi.openmpi.so -> libgmx_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmx_mpi_d.openmpi.so -> libgmx_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi.openmpi.so -> libgmxpreprocess_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so -> libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd_mpi.openmpi.so -> libmd_mpi.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/lib/libmd_mpi_d.openmpi.so -> libmd_mpi_d.openmpi.so.6 chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_powerpc.deb: drwxr-xr-x root/root 0 2011-10-21 05:53 ./ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/bin/ -rwxr-xr-x root/root 141780 2011-10-21 05:53 ./usr/bin/mdrun_mpi.mpich -rwxr-xr-x root/root 141780 2011-10-21 05:53 ./usr/bin/mdrun_mpi_d.mpich drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/man/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/man/man1/ -rw-r--r-- root/root 6217 2011-10-21 05:53 ./usr/share/man/man1/mdrun_mpi.mpich.1.gz drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-10-21 05:28 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 1427 2011-10-21 05:45 ./usr/share/doc/gromacs-mpich/README.Debian -rw-r--r-- root/root 1828 2011-10-21 05:28 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 2277 2011-10-21 05:54 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/lib/ -rw-r--r-- root/root 1922252 2011-10-21 05:53 ./usr/lib/libgmx_mpi.mpich.so.6 -rw-r--r-- root/root 764768 2011-10-21 05:53 ./usr/lib/libmd_mpi.mpich.so.6 -rw-r--r-- root/root 420200 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi.mpich.so.6 -rw-r--r-- root/root 2000092 2011-10-21 05:53 ./usr/lib/libgmx_mpi_d.mpich.so.6 -rw-r--r-- root/root 756556 2011-10-21 05:53 ./usr/lib/libmd_mpi_d.mpich.so.6 -rw-r--r-- root/root 420244 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz chroot-autobuild/build/buildd/gromacs-openmpi_4.5.5-1_powerpc.deb: drwxr-xr-x root/root 0 2011-10-21 05:53 ./ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/bin/ -rwxr-xr-x root/root 141780 2011-10-21 05:53 ./usr/bin/mdrun_mpi.openmpi -rwxr-xr-x root/root 141780 2011-10-21 05:53 ./usr/bin/mdrun_mpi_d.openmpi drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/man/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/man/man1/ -rw-r--r-- root/root 6218 2011-10-21 05:53 ./usr/share/man/man1/mdrun_mpi.openmpi.1.gz drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 79 2011-10-21 05:28 ./usr/share/lintian/overrides/gromacs-openmpi drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/share/doc/gromacs-openmpi/ -rw-r--r-- root/root 1435 2011-10-21 05:51 ./usr/share/doc/gromacs-openmpi/README.Debian -rw-r--r-- root/root 1828 2011-10-21 05:28 ./usr/share/doc/gromacs-openmpi/copyright -rw-r--r-- root/root 2279 2011-10-21 05:54 ./usr/share/doc/gromacs-openmpi/changelog.Debian.gz drwxr-xr-x root/root 0 2011-10-21 05:53 ./usr/lib/ -rw-r--r-- root/root 1922252 2011-10-21 05:53 ./usr/lib/libgmx_mpi.openmpi.so.6 -rw-r--r-- root/root 764768 2011-10-21 05:53 ./usr/lib/libmd_mpi.openmpi.so.6 -rw-r--r-- root/root 420200 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi.openmpi.so.6 -rw-r--r-- root/root 2000092 2011-10-21 05:53 ./usr/lib/libgmx_mpi_d.openmpi.so.6 -rw-r--r-- root/root 756556 2011-10-21 05:53 ./usr/lib/libmd_mpi_d.openmpi.so.6 -rw-r--r-- root/root 420244 2011-10-21 05:53 ./usr/lib/libgmxpreprocess_mpi_d.openmpi.so.6 lrwxrwxrwx root/root 0 2011-10-21 05:53 ./usr/share/man/man1/mdrun_mpi_d.openmpi.1.gz -> mdrun_mpi.openmpi.1.gz gromacs_4.5.5-1_powerpc.changes: Format: 1.8 Date: Wed, 21 Sep 2011 19:10:08 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: powerpc Version: 4.5.5-1 Distribution: precise Urgency: low Maintainer: Ubuntu/powerpc Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.5-1) unstable; urgency=low . * New upstream release. - Remove patches/30_git_release-4.5-patches.dpatch. - man/g_dos.1: Create man page for new binary. * rules: Add build-arch/build-indep targets. Add preliminary support for building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it. * patches/31_manpages.dpatch: Update. Checksums-Sha1: bfe367e759f6bc6070437547dda6cb731373c838 5499336 gromacs_4.5.5-1_powerpc.deb 38f155af3c93cb9f9abbbe143305ed85c059d2a5 289754 gromacs-dev_4.5.5-1_powerpc.deb fb85fc221e84ff4fb749c1103abd55af65872678 3503890 gromacs-mpich_4.5.5-1_powerpc.deb b2503f897ebfc991a52566e42179d0f33f8a30f5 3504552 gromacs-openmpi_4.5.5-1_powerpc.deb Checksums-Sha256: 3afc4e7a84bb3c747b7caba6fcdfccb4b2536f6473e5f1ee89447225e048a62c 5499336 gromacs_4.5.5-1_powerpc.deb ff0281156f58c4da8793777d962f6d9917ead0c65919f15651de4e44e880ea40 289754 gromacs-dev_4.5.5-1_powerpc.deb 0591ab349541ed92073972b005cd4a1548d500992af70bf2f6918c594f4dae1c 3503890 gromacs-mpich_4.5.5-1_powerpc.deb 524f8a05d7ce5e9b9a00e415692dd8ab0a36d4354a84d300a9470e95c940e54e 3504552 gromacs-openmpi_4.5.5-1_powerpc.deb Files: 5b6fcf553ea2cbc5d86434202b9ee8bd 5499336 science extra gromacs_4.5.5-1_powerpc.deb 76ee355a4e5b8fe1c12ced61fb03acd2 289754 devel extra gromacs-dev_4.5.5-1_powerpc.deb f019c7c6547feb76f8f712dfb6169475 3503890 science extra gromacs-mpich_4.5.5-1_powerpc.deb a8e2011157d2c2e8eef20fcb3e67b6c5 3504552 science extra gromacs-openmpi_4.5.5-1_powerpc.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.5 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libibverbs-dev libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev libibverbs1 libfftw3-dev x11-common libx11-dev libcroco3 libopenmpi1.3 x11proto-print-dev libxt-dev libpopt0 libgettextpo0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libcurl3 libexpat1-dev lesstif2 html2text libpthread-stubs0 debhelper libfontconfig1 libmagic1 libexpat1 bsdmainutils openmpi-common libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libtorque2 xorg-sgml-doctools x11proto-core-dev lesstif2-dev dpatch libxcb1-dev libxt6 libxdmcp6 po-debconf libcr-dev emacsen-common libopenmpi-dev libnuma1 libxft-dev libgsl0-dev cmake-data libxml2 x11proto-xext-dev pkg-config libxmlrpc-core-c3-0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libpthread-stubs0-dev libxext-dev libcr0 ucf libxau-dev libxrender-dev gettext-base libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libpipeline1 libxext6 libmpich2-dev libgsl0ldbl libsm-dev (Reading database ... 20207 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libopenmpi-dev ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... 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Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing libsm6 ... Purging configuration files for libsm6 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libpthread-stubs0 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing x11proto-core-dev ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing xorg-sgml-doctools ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111021-0554 Build needed 00:26:21, 261324k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1'] Scanning for processes to kill in build /home/buildd/build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1'] Unmounting chroot for build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1... none /home/buildd/build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1'] Removing build 68f950a95d2fbd3740b67ccb3e14b7ccc13d6ef1