RUN: /bin/echo ['echo', 'Forking build subprocess...'] Forking build subprocess... RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa', '/home/buildd/filecache-default/b8283596f215708ae5d0660bb04f60fe8295b2fd'] Synching the system clock with the buildd NTP service... 11 Dec 04:07:02 ntpdate[6118]: adjust time server 10.211.37.1 offset -0.000009 sec Unpacking chroot for build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa'] Mounting chroot for build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa', 'deb http://ftpmaster.internal/ubuntu precise main universe'] Overriding sources.list in build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa', 'armhf'] Updating debian chroot for build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa Ign http://ftpmaster.internal precise InRelease Get:1 http://ftpmaster.internal precise Release.gpg [198 B] Get:2 http://ftpmaster.internal precise Release [49.6 kB] Ign http://archive-team.internal precise InRelease Ign http://archive-team.internal precise Release.gpg Get:3 http://ftpmaster.internal precise/main armhf Packages [1231 kB] Get:4 http://archive-team.internal precise Release [752 B] Ign http://archive-team.internal precise/main TranslationIndex Get:5 http://archive-team.internal precise/main armhf Packages [1465 kB] Get:6 http://ftpmaster.internal precise/universe armhf Packages [3888 kB] Ign http://archive-team.internal precise/main Translation-en Get:7 http://ftpmaster.internal precise/main TranslationIndex [3502 B] Get:8 http://ftpmaster.internal precise/universe TranslationIndex [2712 B] Get:9 http://ftpmaster.internal precise/main Translation-en [711 kB] Get:10 http://ftpmaster.internal precise/universe Translation-en [3291 kB] Fetched 10.6 MB in 25s (425 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa', 'armhf', 'precise', '--nolog', '--batch', '--archive=ubuntu', '--dist=precise', '--purpose=PRIMARY', '--architecture=armhf', '--comp=universe', 'gromacs_4.5.5-1.dsc'] Initiating build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa with 2 processor cores. Automatic build of gromacs_4.5.5-1 on chort by sbuild/armhf 1.170.5 Build started at 20111211-0408 ****************************************************************************** gromacs_4.5.5-1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 7.0.0), dpatch, libfftw3-dev, libmpich2-dev, libopenmpi-dev (>= 1.2.4-5) [alpha amd64 i386 ia64 powerpc sparc kfreebsd-i386 kfreebsd-amd64 hurd-i386], lesstif2-dev, libx11-dev, zlib1g-dev, libgsl0-dev, gfortran [alpha], libxml2-dev, cmake Checking for already installed source dependencies... debhelper: missing dpatch: missing libfftw3-dev: missing libmpich2-dev: missing lesstif2-dev: missing libx11-dev: missing zlib1g-dev: missing libgsl0-dev: missing libxml2-dev: missing cmake: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper dpatch libfftw3-dev libmpich2-dev lesstif2-dev libx11-dev zlib1g-dev libgsl0-dev libxml2-dev cmake Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: bsdmainutils ca-certificates cmake-data emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 libarchive1 libasn1-8-heimdal libcr-dev libcr0 libcroco3 libcurl3 libcurl3-gnutls libexpat1 libexpat1-dev libfftw3-3 libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgcrypt11 libgettextpo0 libgnutls26 libgpg-error0 libgsl0ldbl libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmpich2-3 libp11-kit0 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libroken18-heimdal librtmp0 libsasl2-2 libsm-dev libsm6 libsqlite3-0 libtasn1-3 libunistring0 libwind0-heimdal libx11-6 libx11-data libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxmlrpc-core-c3 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openssl pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev Suggested packages: wamerican wordlist whois vacation dh-make curl gettext-doc groff rng-tools gnutls-bin gsl-ref-psdoc gsl-doc-pdf gsl-doc-info gsl-ref-html krb5-doc krb5-user less www-browser libmail-box-perl Recommended packages: patchutils blcr-dkms mpich2 libsasl2-modules libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: bsdmainutils ca-certificates cmake cmake-data debhelper dpatch emacsen-common file fontconfig-config gettext gettext-base groff-base html2text intltool-debian lesstif2 lesstif2-dev libarchive1 libasn1-8-heimdal libcr-dev libcr0 libcroco3 libcurl3 libcurl3-gnutls libexpat1 libexpat1-dev libfftw3-3 libfftw3-dev libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgcrypt11 libgettextpo0 libgnutls26 libgpg-error0 libgsl0-dev libgsl0ldbl libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libice-dev libice6 libidn11 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 libmagic1 libmpich2-3 libmpich2-dev libp11-kit0 libpipeline1 libpopt0 libpthread-stubs0 libpthread-stubs0-dev libroken18-heimdal librtmp0 libsasl2-2 libsm-dev libsm6 libsqlite3-0 libtasn1-3 libunistring0 libwind0-heimdal libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb1 libxcb1-dev libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxft-dev libxft2 libxml2 libxml2-dev libxmlrpc-core-c3 libxp-dev libxp6 libxrender-dev libxrender1 libxt-dev libxt6 man-db openssl pkg-config po-debconf ttf-dejavu-core ucf x11-common x11proto-core-dev x11proto-input-dev x11proto-kb-dev x11proto-print-dev x11proto-render-dev x11proto-xext-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 29.0 MB of archives. After this operation, 80.7 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! libexpat1 libpopt0 libsqlite3-0 libroken18-heimdal libasn1-8-heimdal libgpg-error0 libgcrypt11 libp11-kit0 libtasn1-3 libgnutls26 libkrb5support0 libk5crypto3 libkeyutils1 libkrb5-3 libgssapi-krb5-2 libidn11 libhcrypto4-heimdal libheimbase1-heimdal libwind0-heimdal libhx509-5-heimdal libkrb5-26-heimdal libheimntlm0-heimdal libgssapi3-heimdal libsasl2-2 libldap-2.4-2 librtmp0 openssl ca-certificates libcurl3-gnutls libpipeline1 libxau6 libxdmcp6 libxcb1 libx11-data libx11-6 libxext6 libxml2 libarchive1 libcroco3 libcurl3 libfreetype6 ucf ttf-dejavu-core fontconfig-config libfontconfig1 libunistring0 libgettextpo0 x11-common libice6 libsm6 libxrender1 libxft2 libxp6 libxt6 libmagic1 file bsdmainutils gettext-base groff-base man-db libxmlrpc-core-c3 emacsen-common cmake-data cmake html2text gettext intltool-debian po-debconf debhelper dpatch lesstif2 xorg-sgml-doctools x11proto-core-dev libice-dev libsm-dev libxau-dev libxdmcp-dev x11proto-input-dev x11proto-kb-dev xtrans-dev libpthread-stubs0 libpthread-stubs0-dev libxcb1-dev libx11-dev x11proto-xext-dev libxext-dev x11proto-print-dev libxp-dev libxt-dev x11proto-render-dev libxrender-dev libexpat1-dev zlib1g-dev libfreetype6-dev pkg-config libfontconfig1-dev libxft-dev lesstif2-dev libcr0 libcr-dev libfftw3-3 libfftw3-dev libgsl0ldbl libgsl0-dev libxml2-dev libmpich2-3 libmpich2-dev Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ precise/main libexpat1 armhf 2.0.1-7.2 [102 kB] Get:2 http://ftpmaster.internal/ubuntu/ precise/main libpopt0 armhf 1.16-1ubuntu1 [26.1 kB] Get:3 http://ftpmaster.internal/ubuntu/ precise/main libsqlite3-0 armhf 3.7.9-2ubuntu1 [282 kB] Get:4 http://ftpmaster.internal/ubuntu/ precise/main libroken18-heimdal armhf 1.5.dfsg.1-3 [37.3 kB] Get:5 http://ftpmaster.internal/ubuntu/ precise/main libasn1-8-heimdal armhf 1.5.dfsg.1-3 [160 kB] Get:6 http://ftpmaster.internal/ubuntu/ precise/main libgpg-error0 armhf 1.10-1ubuntu1 [14.0 kB] Get:7 http://ftpmaster.internal/ubuntu/ precise/main libgcrypt11 armhf 1.5.0-3 [270 kB] Get:8 http://ftpmaster.internal/ubuntu/ precise/main libp11-kit0 armhf 0.8-2 [27.1 kB] Get:9 http://ftpmaster.internal/ubuntu/ precise/main libtasn1-3 armhf 2.10-1ubuntu1 [36.7 kB] Get:10 http://ftpmaster.internal/ubuntu/ precise/main libgnutls26 armhf 2.12.14-3 [409 kB] Get:11 http://ftpmaster.internal/ubuntu/ precise/main libkrb5support0 armhf 1.9.1+dfsg-3ubuntu1 [20.0 kB] Get:12 http://ftpmaster.internal/ubuntu/ precise/main libk5crypto3 armhf 1.9.1+dfsg-3ubuntu1 [80.0 kB] Get:13 http://ftpmaster.internal/ubuntu/ precise/main libkeyutils1 armhf 1.5.2-2 [6908 B] Get:14 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-3 armhf 1.9.1+dfsg-3ubuntu1 [287 kB] Get:15 http://ftpmaster.internal/ubuntu/ precise/main libgssapi-krb5-2 armhf 1.9.1+dfsg-3ubuntu1 [93.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ precise/main libidn11 armhf 1.22-3 [107 kB] Get:17 http://ftpmaster.internal/ubuntu/ precise/main libhcrypto4-heimdal armhf 1.5.dfsg.1-3 [90.8 kB] Get:18 http://ftpmaster.internal/ubuntu/ precise/main libheimbase1-heimdal armhf 1.5.dfsg.1-3 [10.1 kB] Get:19 http://ftpmaster.internal/ubuntu/ precise/main libwind0-heimdal armhf 1.5.dfsg.1-3 [76.3 kB] Get:20 http://ftpmaster.internal/ubuntu/ precise/main libhx509-5-heimdal armhf 1.5.dfsg.1-3 [95.3 kB] Get:21 http://ftpmaster.internal/ubuntu/ precise/main libkrb5-26-heimdal armhf 1.5.dfsg.1-3 [168 kB] Get:22 http://ftpmaster.internal/ubuntu/ precise/main libheimntlm0-heimdal armhf 1.5.dfsg.1-3 [14.8 kB] Get:23 http://ftpmaster.internal/ubuntu/ precise/main libgssapi3-heimdal armhf 1.5.dfsg.1-3 [84.7 kB] Get:24 http://ftpmaster.internal/ubuntu/ precise/main libsasl2-2 armhf 2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3 [54.2 kB] Get:25 http://ftpmaster.internal/ubuntu/ precise/main libldap-2.4-2 armhf 2.4.25-4ubuntu1 [150 kB] Get:26 http://ftpmaster.internal/ubuntu/ precise/main librtmp0 armhf 2.4~20110711.gitc28f1bab-1 [49.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ precise/main openssl armhf 1.0.0e-2ubuntu4 [506 kB] Get:28 http://ftpmaster.internal/ubuntu/ precise/main ca-certificates armhf 20110502+nmu1ubuntu5 [164 kB] Get:29 http://ftpmaster.internal/ubuntu/ precise/main libcurl3-gnutls armhf 7.22.0-3ubuntu1 [201 kB] Get:30 http://ftpmaster.internal/ubuntu/ precise/main libpipeline1 armhf 1.2.0-5 [20.7 kB] Get:31 http://ftpmaster.internal/ubuntu/ precise/main libxau6 armhf 1:1.0.6-4 [7150 B] Get:32 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp6 armhf 1:1.1.0-4 [11.0 kB] Get:33 http://ftpmaster.internal/ubuntu/ precise/main libxcb1 armhf 1.7-4 [33.2 kB] Get:34 http://ftpmaster.internal/ubuntu/ precise/main libx11-data armhf 2:1.4.4-4 [172 kB] Get:35 http://ftpmaster.internal/ubuntu/ precise/main libx11-6 armhf 2:1.4.4-4 [685 kB] Get:36 http://ftpmaster.internal/ubuntu/ precise/main libxext6 armhf 2:1.3.0-3 [27.8 kB] Get:37 http://ftpmaster.internal/ubuntu/ precise/main libxml2 armhf 2.7.8.dfsg-5ubuntu1 [550 kB] Get:38 http://ftpmaster.internal/ubuntu/ precise/main libarchive1 armhf 2.8.5-3build1 [99.8 kB] Get:39 http://ftpmaster.internal/ubuntu/ precise/main libcroco3 armhf 0.6.2-2 [80.9 kB] Get:40 http://ftpmaster.internal/ubuntu/ precise/main libcurl3 armhf 7.22.0-3ubuntu1 [208 kB] Get:41 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6 armhf 2.4.8-1 [271 kB] Get:42 http://ftpmaster.internal/ubuntu/ precise/main ucf all 3.0025+nmu2ubuntu1 [54.4 kB] Get:43 http://ftpmaster.internal/ubuntu/ precise/main ttf-dejavu-core armhf 2.33-2 [1550 kB] Get:44 http://ftpmaster.internal/ubuntu/ precise/main fontconfig-config armhf 2.8.0-3ubuntu2 [44.5 kB] Get:45 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1 armhf 2.8.0-3ubuntu2 [106 kB] Get:46 http://ftpmaster.internal/ubuntu/ precise/main libunistring0 armhf 0.9.3-5 [393 kB] Get:47 http://ftpmaster.internal/ubuntu/ precise/main libgettextpo0 armhf 0.18.1.1-5ubuntu3 [99.4 kB] Get:48 http://ftpmaster.internal/ubuntu/ precise/main x11-common armhf 1:7.6+7ubuntu7 [56.6 kB] Get:49 http://ftpmaster.internal/ubuntu/ precise/main libice6 armhf 2:1.0.7-2 [37.7 kB] Get:50 http://ftpmaster.internal/ubuntu/ precise/main libsm6 armhf 2:1.2.0-2 [15.1 kB] Get:51 http://ftpmaster.internal/ubuntu/ precise/main libxrender1 armhf 1:0.9.6-2 [16.7 kB] Get:52 http://ftpmaster.internal/ubuntu/ precise/main libxft2 armhf 2.2.0-3ubuntu1 [34.8 kB] Get:53 http://ftpmaster.internal/ubuntu/ precise/main libxp6 armhf 1:1.0.1-2 [14.8 kB] Get:54 http://ftpmaster.internal/ubuntu/ precise/main libxt6 armhf 1:1.1.1-2 [144 kB] Get:55 http://ftpmaster.internal/ubuntu/ precise/main libmagic1 armhf 5.09-2 [213 kB] Get:56 http://ftpmaster.internal/ubuntu/ precise/main file armhf 5.09-2 [19.0 kB] Get:57 http://ftpmaster.internal/ubuntu/ precise/main bsdmainutils armhf 8.2.3 [193 kB] Get:58 http://ftpmaster.internal/ubuntu/ precise/main gettext-base armhf 0.18.1.1-5ubuntu3 [54.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ precise/main groff-base armhf 1.21-6 [926 kB] Get:60 http://ftpmaster.internal/ubuntu/ precise/main man-db armhf 2.6.0.2-3 [673 kB] Get:61 http://ftpmaster.internal/ubuntu/ precise/main libxmlrpc-core-c3 armhf 1.16.33-3.1ubuntu5 [136 kB] Get:62 http://ftpmaster.internal/ubuntu/ precise/main emacsen-common all 1.4.22ubuntu1 [16.9 kB] Get:63 http://ftpmaster.internal/ubuntu/ precise/main cmake-data all 2.8.6-0ubuntu1 [699 kB] Get:64 http://ftpmaster.internal/ubuntu/ precise/main cmake armhf 2.8.6-0ubuntu1 [3591 kB] Get:65 http://ftpmaster.internal/ubuntu/ precise/main html2text armhf 1.3.2a-15 [85.8 kB] Get:66 http://ftpmaster.internal/ubuntu/ precise/main gettext armhf 0.18.1.1-5ubuntu3 [1050 kB] Get:67 http://ftpmaster.internal/ubuntu/ precise/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:68 http://ftpmaster.internal/ubuntu/ precise/main po-debconf armhf 1.0.16+nmu1ubuntu1 [211 kB] Get:69 http://ftpmaster.internal/ubuntu/ precise/main debhelper armhf 8.9.9ubuntu1 [477 kB] Get:70 http://ftpmaster.internal/ubuntu/ precise/main dpatch all 2.0.33 [54.5 kB] Get:71 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2 armhf 1:0.95.2-1 [511 kB] Get:72 http://ftpmaster.internal/ubuntu/ precise/main xorg-sgml-doctools armhf 1:1.8-2 [10.9 kB] Get:73 http://ftpmaster.internal/ubuntu/ precise/main x11proto-core-dev armhf 7.0.22-1 [299 kB] Get:74 http://ftpmaster.internal/ubuntu/ precise/main libice-dev armhf 2:1.0.7-2 [122 kB] Get:75 http://ftpmaster.internal/ubuntu/ precise/main libsm-dev armhf 2:1.2.0-2 [85.2 kB] Get:76 http://ftpmaster.internal/ubuntu/ precise/main libxau-dev armhf 1:1.0.6-4 [9322 B] Get:77 http://ftpmaster.internal/ubuntu/ precise/main libxdmcp-dev armhf 1:1.1.0-4 [25.2 kB] Get:78 http://ftpmaster.internal/ubuntu/ precise/main x11proto-input-dev armhf 2.0.2-2ubuntu1 [69.0 kB] Get:79 http://ftpmaster.internal/ubuntu/ precise/main x11proto-kb-dev armhf 1.0.5-2 [27.6 kB] Get:80 http://ftpmaster.internal/ubuntu/ precise/main xtrans-dev armhf 1.2.6-2 [82.9 kB] Get:81 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0 armhf 0.3-2.1ubuntu1 [3368 B] Get:82 http://ftpmaster.internal/ubuntu/ precise/main libpthread-stubs0-dev armhf 0.3-2.1ubuntu1 [2492 B] Get:83 http://ftpmaster.internal/ubuntu/ precise/main libxcb1-dev armhf 1.7-4 [70.6 kB] Get:84 http://ftpmaster.internal/ubuntu/ precise/main libx11-dev armhf 2:1.4.4-4 [803 kB] Get:85 http://ftpmaster.internal/ubuntu/ precise/main x11proto-xext-dev armhf 7.2.0-3 [253 kB] Get:86 http://ftpmaster.internal/ubuntu/ precise/main libxext-dev armhf 2:1.3.0-3 [140 kB] Get:87 http://ftpmaster.internal/ubuntu/ precise/main x11proto-print-dev armhf 1.0.5-2 [10.7 kB] Get:88 http://ftpmaster.internal/ubuntu/ precise/main libxp-dev armhf 1:1.0.1-2 [80.3 kB] Get:89 http://ftpmaster.internal/ubuntu/ precise/main libxt-dev armhf 1:1.1.1-2 [441 kB] Get:90 http://ftpmaster.internal/ubuntu/ precise/main x11proto-render-dev armhf 2:0.11.1-2 [20.1 kB] Get:91 http://ftpmaster.internal/ubuntu/ precise/main libxrender-dev armhf 1:0.9.6-2 [24.2 kB] Get:92 http://ftpmaster.internal/ubuntu/ precise/main libexpat1-dev armhf 2.0.1-7.2 [181 kB] Get:93 http://ftpmaster.internal/ubuntu/ precise/main zlib1g-dev armhf 1:1.2.3.4.dfsg-3ubuntu4 [158 kB] Get:94 http://ftpmaster.internal/ubuntu/ precise/main libfreetype6-dev armhf 2.4.8-1 [712 kB] Get:95 http://ftpmaster.internal/ubuntu/ precise/main pkg-config armhf 0.26-1ubuntu1 [37.5 kB] Get:96 http://ftpmaster.internal/ubuntu/ precise/main libfontconfig1-dev armhf 2.8.0-3ubuntu2 [637 kB] Get:97 http://ftpmaster.internal/ubuntu/ precise/main libxft-dev armhf 2.2.0-3ubuntu1 [46.6 kB] Get:98 http://ftpmaster.internal/ubuntu/ precise/universe lesstif2-dev armhf 1:0.95.2-1 [756 kB] Get:99 http://ftpmaster.internal/ubuntu/ precise/universe libcr0 armhf 0.8.2-15ubuntu2 [17.2 kB] Get:100 http://ftpmaster.internal/ubuntu/ precise/universe libcr-dev armhf 0.8.2-15ubuntu2 [27.8 kB] Get:101 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-3 armhf 3.2.2-1ubuntu3 [1056 kB] Get:102 http://ftpmaster.internal/ubuntu/ precise/main libfftw3-dev armhf 3.2.2-1ubuntu3 [1278 kB] Get:103 http://ftpmaster.internal/ubuntu/ precise/main libgsl0ldbl armhf 1.15+dfsg-1 [813 kB] Get:104 http://ftpmaster.internal/ubuntu/ precise/main libgsl0-dev armhf 1.15+dfsg-1 [1073 kB] Get:105 http://ftpmaster.internal/ubuntu/ precise/main libxml2-dev armhf 2.7.8.dfsg-5ubuntu1 [651 kB] Get:106 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-3 armhf 1.4.1-1ubuntu1 [743 kB] Get:107 http://ftpmaster.internal/ubuntu/ precise/universe libmpich2-dev armhf 1.4.1-1ubuntu1 [962 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 29.0 MB in 7s (3664 kB/s) Selecting previously unselected package libexpat1. (Reading database ... 11533 files and directories currently installed.) Unpacking libexpat1 (from .../libexpat1_2.0.1-7.2_armhf.deb) ... Selecting previously unselected package libpopt0. Unpacking libpopt0 (from .../libpopt0_1.16-1ubuntu1_armhf.deb) ... Selecting previously unselected package libsqlite3-0. Unpacking libsqlite3-0 (from .../libsqlite3-0_3.7.9-2ubuntu1_armhf.deb) ... Selecting previously unselected package libroken18-heimdal. Unpacking libroken18-heimdal (from .../libroken18-heimdal_1.5.dfsg.1-3_armhf.deb) ... Selecting previously unselected package libasn1-8-heimdal. Unpacking libasn1-8-heimdal (from .../libasn1-8-heimdal_1.5.dfsg.1-3_armhf.deb) ... Selecting previously unselected package libgpg-error0. Unpacking libgpg-error0 (from .../libgpg-error0_1.10-1ubuntu1_armhf.deb) ... Selecting previously unselected package libgcrypt11. Unpacking libgcrypt11 (from .../libgcrypt11_1.5.0-3_armhf.deb) ... Selecting previously unselected package libp11-kit0. Unpacking libp11-kit0 (from .../libp11-kit0_0.8-2_armhf.deb) ... Selecting previously unselected package libtasn1-3. Unpacking libtasn1-3 (from .../libtasn1-3_2.10-1ubuntu1_armhf.deb) ... Selecting previously unselected package libgnutls26. Unpacking libgnutls26 (from .../libgnutls26_2.12.14-3_armhf.deb) ... Selecting previously unselected package libkrb5support0. Unpacking libkrb5support0 (from .../libkrb5support0_1.9.1+dfsg-3ubuntu1_armhf.deb) ... Selecting previously unselected package libk5crypto3. Unpacking libk5crypto3 (from .../libk5crypto3_1.9.1+dfsg-3ubuntu1_armhf.deb) ... Selecting previously unselected package libkeyutils1. Unpacking libkeyutils1 (from .../libkeyutils1_1.5.2-2_armhf.deb) ... Selecting previously unselected package libkrb5-3. Unpacking libkrb5-3 (from .../libkrb5-3_1.9.1+dfsg-3ubuntu1_armhf.deb) ... Selecting previously unselected package libgssapi-krb5-2. Unpacking libgssapi-krb5-2 (from .../libgssapi-krb5-2_1.9.1+dfsg-3ubuntu1_armhf.deb) ... 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Selecting previously unselected package zlib1g-dev. Unpacking zlib1g-dev (from .../zlib1g-dev_1%3a1.2.3.4.dfsg-3ubuntu4_armhf.deb) ... Selecting previously unselected package libfreetype6-dev. Unpacking libfreetype6-dev (from .../libfreetype6-dev_2.4.8-1_armhf.deb) ... Selecting previously unselected package pkg-config. Unpacking pkg-config (from .../pkg-config_0.26-1ubuntu1_armhf.deb) ... Selecting previously unselected package libfontconfig1-dev. Unpacking libfontconfig1-dev (from .../libfontconfig1-dev_2.8.0-3ubuntu2_armhf.deb) ... Selecting previously unselected package libxft-dev. Unpacking libxft-dev (from .../libxft-dev_2.2.0-3ubuntu1_armhf.deb) ... Selecting previously unselected package lesstif2-dev. Unpacking lesstif2-dev (from .../lesstif2-dev_1%3a0.95.2-1_armhf.deb) ... Selecting previously unselected package libcr0. Unpacking libcr0 (from .../libcr0_0.8.2-15ubuntu2_armhf.deb) ... Selecting previously unselected package libcr-dev. Unpacking libcr-dev (from .../libcr-dev_0.8.2-15ubuntu2_armhf.deb) ... Selecting previously unselected package libfftw3-3. Unpacking libfftw3-3 (from .../libfftw3-3_3.2.2-1ubuntu3_armhf.deb) ... Selecting previously unselected package libfftw3-dev. Unpacking libfftw3-dev (from .../libfftw3-dev_3.2.2-1ubuntu3_armhf.deb) ... Selecting previously unselected package libgsl0ldbl. Unpacking libgsl0ldbl (from .../libgsl0ldbl_1.15+dfsg-1_armhf.deb) ... Selecting previously unselected package libgsl0-dev. Unpacking libgsl0-dev (from .../libgsl0-dev_1.15+dfsg-1_armhf.deb) ... Selecting previously unselected package libxml2-dev. Unpacking libxml2-dev (from .../libxml2-dev_2.7.8.dfsg-5ubuntu1_armhf.deb) ... Selecting previously unselected package libmpich2-3. Unpacking libmpich2-3 (from .../libmpich2-3_1.4.1-1ubuntu1_armhf.deb) ... Selecting previously unselected package libmpich2-dev. Unpacking libmpich2-dev (from .../libmpich2-dev_1.4.1-1ubuntu1_armhf.deb) ... Setting up libexpat1 (2.0.1-7.2) ... Setting up libpopt0 (1.16-1ubuntu1) ... Setting up libsqlite3-0 (3.7.9-2ubuntu1) ... Setting up libroken18-heimdal (1.5.dfsg.1-3) ... Setting up libasn1-8-heimdal (1.5.dfsg.1-3) ... Setting up libgpg-error0 (1.10-1ubuntu1) ... Setting up libgcrypt11 (1.5.0-3) ... Setting up libp11-kit0 (0.8-2) ... Setting up libtasn1-3 (2.10-1ubuntu1) ... Setting up libgnutls26 (2.12.14-3) ... Setting up libkrb5support0 (1.9.1+dfsg-3ubuntu1) ... Setting up libk5crypto3 (1.9.1+dfsg-3ubuntu1) ... Setting up libkeyutils1 (1.5.2-2) ... Setting up libkrb5-3 (1.9.1+dfsg-3ubuntu1) ... Setting up libgssapi-krb5-2 (1.9.1+dfsg-3ubuntu1) ... Setting up libidn11 (1.22-3) ... Setting up libhcrypto4-heimdal (1.5.dfsg.1-3) ... Setting up libheimbase1-heimdal (1.5.dfsg.1-3) ... Setting up libwind0-heimdal (1.5.dfsg.1-3) ... Setting up libhx509-5-heimdal (1.5.dfsg.1-3) ... Setting up libkrb5-26-heimdal (1.5.dfsg.1-3) ... Setting up libheimntlm0-heimdal (1.5.dfsg.1-3) ... Setting up libgssapi3-heimdal (1.5.dfsg.1-3) ... Setting up libsasl2-2 (2.1.24~rc1.dfsg1+cvs2011-05-23-4ubuntu3) ... Setting up libldap-2.4-2 (2.4.25-4ubuntu1) ... Setting up librtmp0 (2.4~20110711.gitc28f1bab-1) ... Setting up openssl (1.0.0e-2ubuntu4) ... Setting up ca-certificates (20110502+nmu1ubuntu5) ... Updating certificates in /etc/ssl/certs... WARNING: Skipping duplicate certificate cert_igca_rsa.pem WARNING: Skipping duplicate certificate cert_igca_rsa.pem 156 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d....done. Setting up libcurl3-gnutls (7.22.0-3ubuntu1) ... Setting up libpipeline1 (1.2.0-5) ... Setting up libxau6 (1:1.0.6-4) ... Setting up libxdmcp6 (1:1.1.0-4) ... Setting up libxcb1 (1.7-4) ... Setting up libx11-data (2:1.4.4-4) ... Setting up libx11-6 (2:1.4.4-4) ... Setting up libxext6 (2:1.3.0-3) ... Setting up libxml2 (2.7.8.dfsg-5ubuntu1) ... Setting up libarchive1 (2.8.5-3build1) ... Setting up libcroco3 (0.6.2-2) ... Setting up libcurl3 (7.22.0-3ubuntu1) ... Setting up libfreetype6 (2.4.8-1) ... Setting up ucf (3.0025+nmu2ubuntu1) ... Setting up ttf-dejavu-core (2.33-2) ... Setting up fontconfig-config (2.8.0-3ubuntu2) ... Setting up libfontconfig1 (2.8.0-3ubuntu2) ... Setting up libunistring0 (0.9.3-5) ... Setting up libgettextpo0 (0.18.1.1-5ubuntu3) ... Setting up x11-common (1:7.6+7ubuntu7) ... invoke-rc.d: policy-rc.d denied execution of start. Setting up libice6 (2:1.0.7-2) ... Setting up libsm6 (2:1.2.0-2) ... Setting up libxrender1 (1:0.9.6-2) ... Setting up libxft2 (2.2.0-3ubuntu1) ... Setting up libxp6 (1:1.0.1-2) ... Setting up libxt6 (1:1.1.1-2) ... Setting up libmagic1 (5.09-2) ... Setting up file (5.09-2) ... Setting up bsdmainutils (8.2.3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode. update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode. Setting up gettext-base (0.18.1.1-5ubuntu3) ... Setting up groff-base (1.21-6) ... Setting up man-db (2.6.0.2-3) ... Building database of manual pages ... Setting up libxmlrpc-core-c3 (1.16.33-3.1ubuntu5) ... Setting up emacsen-common (1.4.22ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake-data (2.8.6-0ubuntu1) ... emacsen-common: Handling install of emacsen flavor emacs Setting up cmake (2.8.6-0ubuntu1) ... Setting up html2text (1.3.2a-15) ... Setting up gettext (0.18.1.1-5ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu1ubuntu1) ... Setting up debhelper (8.9.9ubuntu1) ... Setting up dpatch (2.0.33) ... Setting up lesstif2 (1:0.95.2-1) ... Setting up xorg-sgml-doctools (1:1.8-2) ... Setting up x11proto-core-dev (7.0.22-1) ... Setting up libice-dev (2:1.0.7-2) ... Setting up libsm-dev (2:1.2.0-2) ... Setting up libxau-dev (1:1.0.6-4) ... Setting up libxdmcp-dev (1:1.1.0-4) ... Setting up x11proto-input-dev (2.0.2-2ubuntu1) ... Setting up x11proto-kb-dev (1.0.5-2) ... Setting up xtrans-dev (1.2.6-2) ... Setting up libpthread-stubs0 (0.3-2.1ubuntu1) ... Setting up libpthread-stubs0-dev (0.3-2.1ubuntu1) ... Setting up libxcb1-dev (1.7-4) ... Setting up libx11-dev (2:1.4.4-4) ... Setting up x11proto-xext-dev (7.2.0-3) ... Setting up libxext-dev (2:1.3.0-3) ... Setting up x11proto-print-dev (1.0.5-2) ... Setting up libxp-dev (1:1.0.1-2) ... Setting up libxt-dev (1:1.1.1-2) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up libxrender-dev (1:0.9.6-2) ... Setting up libexpat1-dev (2.0.1-7.2) ... Setting up zlib1g-dev (1:1.2.3.4.dfsg-3ubuntu4) ... Setting up libfreetype6-dev (2.4.8-1) ... Setting up pkg-config (0.26-1ubuntu1) ... Setting up libfontconfig1-dev (2.8.0-3ubuntu2) ... Setting up libxft-dev (2.2.0-3ubuntu1) ... Setting up lesstif2-dev (1:0.95.2-1) ... Setting up libcr0 (0.8.2-15ubuntu2) ... Setting up libcr-dev (0.8.2-15ubuntu2) ... Setting up libfftw3-3 (3.2.2-1ubuntu3) ... Setting up libfftw3-dev (3.2.2-1ubuntu3) ... Setting up libgsl0ldbl (1.15+dfsg-1) ... Setting up libgsl0-dev (1.15+dfsg-1) ... Setting up libxml2-dev (2.7.8.dfsg-5ubuntu1) ... Setting up libmpich2-3 (1.4.1-1ubuntu1) ... Setting up libmpich2-dev (1.4.1-1ubuntu1) ... update-alternatives: using /usr/include/mpich2 to provide /usr/include/mpi (mpi) in auto mode. Processing triggers for libc-bin ... ldconfig deferred processing now taking place Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.13-20ubuntu10 make_3.81-8.1ubuntu1 dpkg-dev_1.16.1.2ubuntu3 gcc-4.6_4.6.2-6ubuntu1 g++-4.6_4.6.2-6ubuntu1 binutils_2.22-1ubuntu1 libstdc++6-4.6-dev_4.6.2-6ubuntu1 libstdc++6_4.6.2-6ubuntu1 ------------------------------------------------------------------------------ gpgv: Signature made Thu Sep 22 02:14:17 2011 UTC using RSA key ID EC65108F gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./gromacs_4.5.5-1.dsc dpkg-source: info: extracting gromacs in gromacs-4.5.5 dpkg-source: info: unpacking gromacs_4.5.5.orig.tar.gz dpkg-source: info: applying gromacs_4.5.5-1.diff.gz dpkg-buildpackage: export CFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export CPPFLAGS from dpkg-buildflags (origin: vendor): -D_FORTIFY_SOURCE=2 dpkg-buildpackage: export CXXFLAGS from dpkg-buildflags (origin: vendor): -g -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Wformat-security dpkg-buildpackage: export FFLAGS from dpkg-buildflags (origin: vendor): -g -O2 dpkg-buildpackage: export LDFLAGS from dpkg-buildflags (origin: vendor): -Wl,-Bsymbolic-functions -Wl,-z,relro dpkg-buildpackage: source package gromacs dpkg-buildpackage: source version 4.5.5-1 dpkg-source --before-build gromacs-4.5.5 dpkg-buildpackage: host architecture armhf /usr/bin/fakeroot debian/rules clean dh_testdir dh_testroot rm -rf build dh_clean patch-stamp build-basic build-mpich build-openmpi configure-stamp \ debian/gromacs-mpich.README.Debian debian/gromacs-openmpi.README.Debian dpatch deapply-all 31_manpages not applied to ./ . 11_readme not applied to ./ . rm -rf patch-stamp patch-stampT debian/patched debian/rules build test -d debian/patched || install -d debian/patched dpatch apply-all applying patch 11_readme to ./ ... ok. applying patch 31_manpages to ./ ... ok. dpatch cat-all >>patch-stampT mv -f patch-stampT patch-stamp dh_testdir (mkdir -p build/basic; cd build/basic; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "" -- Using default library suffix: "" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic (mkdir -p build/basic-dp; cd build/basic-dp; cmake /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=OFF -DGMX_DOUBLE=ON) -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using default binary suffix: "_d" -- Using default library suffix: "_d" -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so -- Looking for XOpenDisplay in /usr/lib/arm-linux-gnueabihf/libX11.so;/usr/lib/arm-linux-gnueabihf/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Looking for IceConnectionNumber in ICE -- Looking for IceConnectionNumber in ICE - found -- Found X11: /usr/lib/arm-linux-gnueabihf/libX11.so -- Looking for include files CMAKE_HAVE_PTHREAD_H -- Looking for include files CMAKE_HAVE_PTHREAD_H - found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Success -- Looking for include files HAVE_SCHED_H -- Looking for include files HAVE_SCHED_H - found -- Looking for sysconf -- Looking for sysconf - found -- Atomics found -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3: /usr/lib/libfftw3.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/basic-dp (mkdir -p build/mpich; cd build/mpich; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_BINARY_SUFFIX="_mpi.mpich" -DGMX_LIBS_SUFFIX="_mpi.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi.mpich" -- Using manually set library suffix: "_mpi.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- Looking for include files HAVE_PWD_H - found -- Looking for include files HAVE_STDINT_H -- Looking for include files HAVE_STDINT_H - found -- Looking for include files HAVE_STDLIB_H -- Looking for include files HAVE_STDLIB_H - found -- Looking for include files HAVE_PTHREAD_H -- Looking for include files HAVE_PTHREAD_H - found -- Looking for include files HAVE_DIRENT_H -- Looking for include files HAVE_DIRENT_H - found -- Looking for include files HAVE_INTTYPES_H -- Looking for include files HAVE_INTTYPES_H - found -- Looking for include files HAVE_REGEX_H -- Looking for include files HAVE_REGEX_H - found -- Looking for include files HAVE_SYS_TYPES_H -- Looking for include files HAVE_SYS_TYPES_H - found -- Looking for include files HAVE_SYS_STAT_H -- Looking for include files HAVE_SYS_STAT_H - found -- Looking for include files HAVE_SYS_TIME_H -- Looking for include files HAVE_SYS_TIME_H - found -- Looking for include files HAVE_RPC_RPC_H -- Looking for include files HAVE_RPC_RPC_H - found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for isnan -- Looking for isnan - found -- Looking for _isnan -- Looking for _isnan - not found -- Looking for isfinite -- Looking for isfinite - not found -- Looking for _isfinite -- Looking for _isfinite - not found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for cbrt in m -- Looking for cbrt in m - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of bool -- Check size of bool - failed -- Check size of int -- Check size of int - done -- Check size of long int -- Check size of long int - done -- Check size of long long int -- Check size of long long int - done -- Check size of off_t -- Check size of off_t - done -- Check size of void * -- Check size of void * - done -- Check size of uid_t -- Check size of uid_t - done -- Check size of gid_t -- Check size of gid_t - done -- Check size of size_t -- Check size of size_t - done -- Check size of off_t -- Check size of off_t - done -- Check if the system is big endian -- Searching 16 bit integer -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- checking for module 'libxml-2.0' -- found libxml-2.0, version 2.7.8 -- Found LibXml2: /usr/lib/arm-linux-gnueabihf/libxml2.so -- Setting build user & time -- Setting build user & time - OK -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present with _FILE_OFFSET_BITS=64 -- Checking for fseeko/ftello -- Checking for fseeko/ftello - not found -- Looking for fseeko -- Looking for fseeko - found -- Checking for return type of signals -- Checking for return type of signals - void -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for inline keyword -- Checking for inline keyword - inline -- Checking for pipe support -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Checking for MSVC x86 inline asm -- Checking for MSVC x86 inline asm - not supported -- Checking for system XDR support -- Checking for system XDR support - present -- Found FFTW3F: /usr/lib/libfftw3f.so -- The ASM-ATT compiler identification is GNU -- Found assembler: /usr/bin/as -- Configuring done -- Generating done -- Build files have been written to: /build/buildd/gromacs-4.5.5/build/mpich (mkdir -p build/mpich-dp; cd build/mpich-dp; CC=/usr/bin/mpicc.mpich2 cmake \ /build/buildd/gromacs-4.5.5 -DCMAKE_INSTALL_PREFIX="/usr" -DCMAKE_EXE_LINKER_FLAGS="-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,--as-needed" -DCMAKE_SKIP_RPATH=TRUE -DGMX_X11=ON -DGMX_MPI=ON -DGMX_THREADS=OFF -DGMX_X11=OFF -DGMX_DEFAULT_SUFFIX=FALSE -DGMX_DOUBLE=ON -DGMX_BINARY_SUFFIX="_mpi_d.mpich" -DGMX_LIBS_SUFFIX="_mpi_d.mpich") -- The C compiler identification is GNU -- The CXX compiler identification is GNU -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- Check for working C compiler: /usr/bin/mpicc.mpich2 -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Performing Test CFLAGS_WARN -- Performing Test CFLAGS_WARN - Success -- Performing Test CFLAGS_EXCESS_PREC -- Performing Test CFLAGS_EXCESS_PREC - Success -- Performing Test CFLAGS_COPT -- Performing Test CFLAGS_COPT - Success -- Performing Test CFLAGS_NOINLINE -- Performing Test CFLAGS_NOINLINE - Success -- Performing Test CXXFLAGS_WARN -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Using manually set binary suffix: "_mpi_d.mpich" -- Using manually set library suffix: "_mpi_d.mpich" CMake Warning at CMakeLists.txt:192 (MESSAGE): There are known problems with some MPI implementations: OpenMPI version < 1.4.1 MVAPICH2 version <= 1.4.1 * -- Checking for MPI_IN_PLACE -- Performing Test MPI_IN_PLACE_COMPILE_OK -- Performing Test MPI_IN_PLACE_COMPILE_OK - Success -- Checking for MPI_IN_PLACE - yes -- Checking for CRAY XT Catamount compile -- Checking for CRAY XT Catamount target - no -- Looking for include files HAVE_STRING_H -- Looking for include files HAVE_STRING_H - found -- Looking for include files HAVE_MATH_H -- Looking for include files HAVE_MATH_H - found -- Looking for include files HAVE_LIMITS_H -- Looking for include files HAVE_LIMITS_H - found -- Looking for include files HAVE_MEMORY_H -- Looking for include files HAVE_MEMORY_H - found -- Looking for include files HAVE_UNISTD_H -- Looking for include files HAVE_UNISTD_H - found -- Looking for include files HAVE_DIRECT_H -- Looking for include files HAVE_DIRECT_H - not found. -- Looking for include files HAVE_PWD_H -- 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found -- Looking for include files HAVE_RPC_XDR_H -- Looking for include files HAVE_RPC_XDR_H - found -- Looking for include files HAVE_XMMINTRIN_H -- Looking for include files HAVE_XMMINTRIN_H - not found. -- Looking for include files HAVE_EMMINTRIN_H -- Looking for include files HAVE_EMMINTRIN_H - not found. -- Looking for include files HAVE_PMMINTRIN_H -- Looking for include files HAVE_PMMINTRIN_H - not found. -- Looking for include files HAVE_SMMINTRIN_H -- Looking for include files HAVE_SMMINTRIN_H - not found. -- Looking for include files HAVE_IO_H -- Looking for include files HAVE_IO_H - not found. -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strdup -- Looking for strdup - found -- Looking for vprintf -- Looking for vprintf - found -- Looking for memcmp -- Looking for memcmp - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - found -- Looking for _aligned_malloc -- Looking for 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src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable do_dssp Linking C executable g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o [ 90%] Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_anaeig Linking C executable g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o [ 91%] Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_angle Linking C executable g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o Linking C executable g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_chi make[3]: Leaving directory 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Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_covar [ 92%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_density Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Linking C executable g_densorder Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_dielectric Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Linking C executable g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_dipoles Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Linking C executable g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o [ 93%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o Linking C executable g_dist Linking C executable g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat Linking C executable g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_filter [ 93%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_gyrate [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_h2order [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_hbond [ 94%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Linking C executable g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_kinetics Linking C executable g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_mdmat Linking C executable g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o Linking C executable g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_mindist Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_morph [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_msd make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_nmeig [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_nmtraj Scanning dependencies of target g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_options make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_order Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_order Linking C executable g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o Linking C executable g_polystat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal Linking C executable g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o Linking C executable g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o [ 97%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Linking C executable g_rms Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o Linking C executable g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_rmsf [ 97%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o Linking C executable g_rotacf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Scanning dependencies of target g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Linking C executable g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o Linking C executable g_saltbr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Scanning dependencies of target g_select make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o Linking C executable g_sas Linking C executable g_select make[3]: Leaving directory 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89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_bar.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_membed.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_pme_error.c.o [ 89%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_options.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_dos.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_hydorder.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_densorder.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/powerspect.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/dens_filter.c.o [ 90%] Building C object src/tools/CMakeFiles/gmxana.dir/binsearch.c.o Linking C shared library libgmxana_d.so make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target gmxana make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Scanning dependencies of target do_dssp make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/editconf.dir/editconf.c.o [ 90%] Building C object src/tools/CMakeFiles/do_dssp.dir/do_dssp.c.o Linking C executable editconf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target eneconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/eneconv.dir/eneconv.c.o Linking C executable eneconv_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_anadock make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Building C object src/tools/CMakeFiles/g_anadock.dir/g_anadock.c.o Linking C executable do_dssp_d Linking C executable g_anadock_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_anaeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_anaeig.dir/g_anaeig.c.o Scanning dependencies of target g_analyze make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Linking C executable g_anaeig_d Building C object src/tools/CMakeFiles/g_analyze.dir/g_analyze.c.o Linking C executable g_analyze_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_angle.dir/g_angle.c.o [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Linking C executable g_angle_d Building C object src/tools/CMakeFiles/g_bar.dir/g_bar.c.o Linking C executable g_bar_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_bond.dir/g_bond.c.o [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Linking C executable g_bond_d Building C object src/tools/CMakeFiles/g_bundle.dir/g_bundle.c.o Linking C executable g_bundle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_chi.dir/g_chi.c.o Scanning dependencies of target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_cluster.dir/g_cluster.c.o Linking C executable g_chi_d Linking C executable g_cluster_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_chi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_clustsize make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_clustsize.dir/g_clustsize.c.o Scanning dependencies of target g_confrms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Building C object src/tools/CMakeFiles/g_confrms.dir/g_confrms.c.o Linking C executable g_clustsize_d Linking C executable g_confrms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_covar make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_covar.dir/g_covar.c.o Scanning dependencies of target g_current make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_current.dir/g_current.c.o Linking C executable g_covar_d Linking C executable g_current_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_density make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_density.dir/g_density.c.o Scanning dependencies of target g_densmap make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_densmap.dir/g_densmap.c.o Linking C executable g_density_d Linking C executable g_densmap_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_densorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_densorder.dir/g_densorder.c.o Scanning dependencies of target g_dielectric make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dielectric.dir/g_dielectric.c.o Linking C executable g_densorder_d Linking C executable g_dielectric_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dih make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_dih.dir/g_dih.c.o Scanning dependencies of target g_dipoles make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Building C object src/tools/CMakeFiles/g_dipoles.dir/g_dipoles.c.o Linking C executable g_dih_d Linking C executable g_dipoles_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_disre make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_disre.dir/g_disre.c.o Scanning dependencies of target g_dist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dist.dir/g_dist.c.o Linking C executable g_disre_d Linking C executable g_dist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_dos make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_dos.dir/g_dos.c.o Scanning dependencies of target g_dyndom make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_dyndom.dir/g_dyndom.c.o Linking C executable g_dos_d Linking C executable g_dyndom_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_enemat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_enemat.dir/g_enemat.c.o Scanning dependencies of target g_energy make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_energy.dir/g_energy.c.o Linking C executable g_enemat_d Linking C executable g_energy_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_filter make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_filter.dir/g_filter.c.o Scanning dependencies of target g_gyrate make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Building C object src/tools/CMakeFiles/g_gyrate.dir/g_gyrate.c.o Linking C executable g_filter_d Linking C executable g_gyrate_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_h2order make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_gyrate [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_h2order.dir/g_h2order.c.o Scanning dependencies of target g_hbond make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_hbond.dir/g_hbond.c.o Linking C executable g_h2order_d Linking C executable g_hbond_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_helix make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_helix.dir/g_helix.c.o Scanning dependencies of target g_helixorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Building C object src/tools/CMakeFiles/g_helixorient.dir/g_helixorient.c.o Linking C executable g_helix_d Linking C executable g_helixorient_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_hydorder make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Scanning dependencies of target g_kinetics make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_hydorder.dir/g_hydorder.c.o [ 94%] Building C object src/tools/CMakeFiles/g_kinetics.dir/g_kinetics.c.o Linking C executable g_hydorder_d Linking C executable g_kinetics_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_kinetics Scanning dependencies of target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Scanning dependencies of target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_lie.dir/g_lie.c.o [ 95%] Building C object src/tools/CMakeFiles/g_mdmat.dir/g_mdmat.c.o Linking C executable g_lie_d Linking C executable g_mdmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_membed make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mdmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Scanning dependencies of target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_membed.dir/g_membed.c.o [ 95%] Building C object src/tools/CMakeFiles/g_mindist.dir/g_mindist.c.o Linking C executable g_membed_d Linking C executable g_mindist_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_morph make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_msd [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_morph.dir/g_morph.c.o [ 95%] Building C object src/tools/CMakeFiles/g_msd.dir/g_msd.c.o Linking C executable g_morph_d Linking C executable g_msd_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmeig make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmens make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmeig.dir/g_nmeig.c.o [ 95%] Building C object src/tools/CMakeFiles/g_nmens.dir/g_nmens.c.o Linking C executable g_nmeig_d Linking C executable g_nmens_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_nmtraj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_options [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_nmtraj.dir/g_nmtraj.c.o [ 96%] Building C object src/tools/CMakeFiles/g_options.dir/g_options.c.o Linking C executable g_nmtraj_d Linking C executable g_options_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_order [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_pme_error make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_order.dir/g_order.c.o [ 96%] Building C object src/tools/CMakeFiles/g_pme_error.dir/g_pme_error.c.o Linking C executable g_order_d Linking C executable g_pme_error_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_polystat [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_potential make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_polystat.dir/g_polystat.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Building C object src/tools/CMakeFiles/g_potential.dir/g_potential.c.o Linking C executable g_polystat_d Linking C executable g_potential_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_principal make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_rama make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_principal.dir/g_principal.c.o [ 96%] Building C object src/tools/CMakeFiles/g_rama.dir/g_rama.c.o Linking C executable g_principal_d Linking C executable g_rama_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Scanning dependencies of target g_rdf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_rms make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rdf.dir/g_rdf.c.o make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Building C object src/tools/CMakeFiles/g_rms.dir/g_rms.c.o Linking C executable g_rdf_d Linking C executable g_rms_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_rmsdist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rmsdist.dir/g_rmsdist.c.o [ 97%] Building C object src/tools/CMakeFiles/g_rmsf.dir/g_rmsf.c.o Linking C executable g_rmsdist_d Linking C executable g_rmsf_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rmsf Scanning dependencies of target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_rotacf.dir/g_rotacf.c.o [ 97%] Building C object src/tools/CMakeFiles/g_rotmat.dir/g_rotmat.c.o Linking C executable g_rotacf_d Linking C executable g_rotmat_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_saltbr Built target g_rotmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_saltbr.dir/g_saltbr.c.o [ 97%] Building C object src/tools/CMakeFiles/g_sas.dir/g_sas.c.o Linking C executable g_saltbr_d Linking C executable g_sas_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Scanning dependencies of target g_select Built target g_sas make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Scanning dependencies of target g_sgangle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_select.dir/g_select.c.o [ 98%] Building C object src/tools/CMakeFiles/g_sgangle.dir/g_sgangle.c.o Linking C executable g_select_d Linking C executable g_sgangle_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sgangle Scanning dependencies of target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sham.dir/g_sham.c.o Scanning dependencies of target g_sigeps make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Linking C executable g_sham_d Building C object src/tools/CMakeFiles/g_sigeps.dir/g_sigeps.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_sorient make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_sorient.dir/g_sorient.c.o Linking C executable g_sorient_d Linking C executable g_sigeps_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spatial make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_spatial.dir/g_spatial.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_spol make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_spatial_d [ 98%] Building C object src/tools/CMakeFiles/g_spol.dir/g_spol.c.o Linking C executable g_spol_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tcaf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Building C object src/tools/CMakeFiles/g_tcaf.dir/g_tcaf.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_traj make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable g_tcaf_d [ 99%] Building C object src/tools/CMakeFiles/g_traj.dir/g_traj.c.o Linking C executable g_traj_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_tune_pme make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_tune_pme.dir/g_tune_pme.c.o [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_vanhove make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Linking C executable g_tune_pme_d Building C object src/tools/CMakeFiles/g_vanhove.dir/g_vanhove.c.o Linking C executable g_vanhove_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_velacc make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_velacc.dir/g_velacc.c.o [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_wham make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Linking C executable g_velacc_d Building C object src/tools/CMakeFiles/g_wham.dir/g_wham.c.o Linking C executable g_wham_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/g_wheel.dir/g_wheel.c.o [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genbox make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Linking C executable g_wheel_d Building C object src/tools/CMakeFiles/genbox.dir/genbox.c.o Linking C executable genbox_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Building C object src/tools/CMakeFiles/genconf.dir/genconf.c.o [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Linking C executable genconf_d Building C object src/tools/CMakeFiles/genion.dir/genion.c.o Linking C executable genion_d make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target genrestr make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/genrestr.dir/genrestr.c.o Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target make_edi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Linking C executable genrestr_d make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_edi.dir/make_edi.c.o make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Scanning dependencies of target make_ndx make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Building C object src/tools/CMakeFiles/make_ndx.dir/make_ndx.c.o Linking C executable make_edi_d make[3]: 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object src/mdlib/CMakeFiles/md.dir/gmx_fft_mkl.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/shakef.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/coupling.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/domdec_network.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/update.c.o [ 90%] Building C object src/mdlib/CMakeFiles/md.dir/gmx_parallel_3dfft.c.o Linking C shared library libmd_mpi_d.mpich.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target gmxpreprocess make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 91%] [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/compute_io.c.o Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/add_par.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/convparm.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_ad.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gen_vsite.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/genhydro.c.o [ 91%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_atomtype.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/gpp_bond_atomtype.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/h_db.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hackblock.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/hizzie.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/nm2type.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pdb2top.c.o [ 93%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/pgutil.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readir.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/readpull.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/resall.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/sorting.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/specbond.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/ter_db.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tomorse.c.o [ 94%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topdirs.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topexcl.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topio.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toppush.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/topshake.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/toputil.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/tpbcmp.c.o [ 95%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/vsite_parm.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/fflibutil.c.o [ 97%] Building C object src/kernel/CMakeFiles/gmxpreprocess.dir/xlate.c.o Linking C shared library libgmxpreprocess_mpi_d.mpich.so make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] [ 97%] Building C object src/kernel/CMakeFiles/mdrun.dir/ionize.c.o Building C object src/kernel/CMakeFiles/mdrun.dir/gctio.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/runner.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/do_gct.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/repl_ex.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/xutils.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/md.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/mdrun.c.o [ 98%] Building C object src/kernel/CMakeFiles/mdrun.dir/genalg.c.o [100%] Building C object src/kernel/CMakeFiles/mdrun.dir/md_openmm.c.o Linking C executable mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' sed -e 's/#MPIABBR#/mpich/g' -e 's/#MPIPROG#/MPICH2/g' \ < debian/gromacs-parallel.README.Debian.in \ > debian/gromacs-mpich.README.Debian touch build-mpich dh_testdir touch build-openmpi /usr/bin/fakeroot debian/rules binary-arch dh_testdir dh_testroot dh_prep -pgromacs dh_installdirs -pgromacs /usr/bin/make -j2 -C build/basic install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 62%] Built target ngmx [ 71%] Built target md make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 75%] Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 88%] Built target gmxana [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 89%] Built target pdb2gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target editconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_anaeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 90%] Built target g_angle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bar [ 91%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_bundle make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_cluster make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 91%] Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_current make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] [ 92%] Built target g_densmap Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_disre make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 92%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_enemat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_filter make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_hydorder [ 94%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 94%] Built target g_lie make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mdmat [ 95%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_mindist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 95%] Built target g_order [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] Built target g_principal [ 96%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 96%] [ 97%] Built target g_rama Built target g_rdf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsdist [ 97%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_rmsf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rotacf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 97%] Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_select make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] Built target g_sorient [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 98%] [ 98%] Built target g_tcaf Built target g_spol make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target g_wheel make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genconf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genion make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target genrestr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_edi make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [ 99%] [ 99%] Built target trjconv Built target trjorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencads.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/highway.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.r2b -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.rtp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/atomtypes.atp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Installing: 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic' /usr/bin/make -j2 -C build/basic-dp install DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 56%] Built target gmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 59%] Built target g_xrama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 68%] Built target md [ 71%] Built target ngmx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxpreprocess make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_luck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_protonate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target g_x2top make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 75%] Built target gmxcheck make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 88%] Built target gmxana [ 88%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target gmxdump make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] Built target grompp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 89%] [ 90%] Built target pdb2gmx Built target mdrun make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target tpbconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target do_dssp make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target editconf make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target eneconv make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_anaeig [ 90%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_anadock make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] Built target g_analyze make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 90%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_angle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_bundle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_chi make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_cluster make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_clustsize make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 91%] Built target g_confrms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] [ 92%] Built target g_current Built target g_covar make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_density make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densmap make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_densorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dielectric make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dih make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 92%] Built target g_dipoles make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_disre Built target g_dist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dos make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_dyndom make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_enemat [ 93%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_energy make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] [ 93%] Built target g_filter Built target g_gyrate make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 93%] Built target g_h2order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hbond make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helix make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_helixorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_hydorder make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_kinetics make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 94%] Built target g_lie make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mdmat make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_membed make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_mindist make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_morph make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_msd make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmeig make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmens make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 95%] Built target g_nmtraj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_options make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_order make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_pme_error make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_polystat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_potential make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_principal make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 96%] Built target g_rama make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rdf Built target g_rms make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rmsf Built target g_rmsdist make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] [ 97%] Built target g_rotacf Built target g_rotmat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_saltbr make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 97%] Built target g_sas make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] [ 98%] Built target g_select Built target g_sgangle make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sigeps make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_sorient make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spatial make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 98%] Built target g_spol [ 98%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_tcaf make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_traj make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target g_tune_pme make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_vanhove make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wham make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_velacc make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target g_wheel make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genconf [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target genbox make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target genrestr [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target genion make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target make_edi [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target make_ndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target mk_angndx make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjcat make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [ 99%] Built target trjorder [ 99%] make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Built target trjconv make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' [100%] Built target xpm2ps make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' Install the project... -- Install configuration: "Release" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/. -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/template.c -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./template/README -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/mixed.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/mixed/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/em.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/full.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/speptide.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/speptide/pr.mdp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/genconf.gcp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr2/topol.top -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/pep.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/nmr1/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/cleanit -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/methanol.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/methanol/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/grompp.mdp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/conf.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/spc216.pdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/topol.top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/water/index.ndx -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/demo -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./tutor/gmxdemo/cpeptide.pdb -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencads.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/methanol216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a1.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/flexspc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/export.dlg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/highway.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a6.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/xlateat.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atommass.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encadv.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/co-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG45a3.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffencadv.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a5.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/dgsolv.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/bromacs.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ha-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber94.ff/aminoacids.arn -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/methanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/1propanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ethanol.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomname2type.n2t -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/oplsaa.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/vdwradii.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sw.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/specbond.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ca-shift.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/edissoc.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/bonds.dlg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ps.m2p -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/2mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p8o25.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/fa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/1mlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/decane50.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2p4o13.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tfe.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/dlg.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/h2po4.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx.ff/aminoacids.vsd -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/f3c.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/encads.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/phbres.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/random.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gurgle.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spc216.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/atom_nom.tbl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/surface.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/defselection.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-11.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-8.xvg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber96.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-12.xvg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos43a2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG53a5.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip5p.gro -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos45a3.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/elements.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gromos53a6.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffgmx2.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a2.itp -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber99sb-ildn.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip4p.gro -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/refi_aa.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ss.map -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/links.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/sfactor.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffG43a1.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/ffoplsaa-n.tst -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/cb-shift.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnanonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffnabonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/cmap.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/gb.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/rna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/lipids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/tips3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/charmm27.ff/aminoacids.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-10.xvg -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/table6-9.xvg -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip5p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/gbsa.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/rna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/urea.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.arn -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/tip4pew.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.r2b -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/dna.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amberGS.ff/aminoacids.arn -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.doc -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip4p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffnonbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.n.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/watermodels.dat -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.hdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spc.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/forcefield.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ff_dum.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ffbonded.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/tip3p.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/ions.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/spce.itp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.rtp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.c.tdb -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/atomtypes.atp -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/gmx2.ff/aminoacids.vsd -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/electroneg.dat -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/./top/amber03.ff/rna.hdb -- 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/build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/trjcat.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_potential.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_rms.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/genbox.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/make_ndx.1 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man1/g_membed.1 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7 -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/./man7/gromacs.7 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmx_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmx_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libmd_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libmd_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxpreprocess_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mdrun_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/grompp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/tpbconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/pdb2gmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_protonate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_luck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxdump_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_x2top_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/gmxcheck_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxpreprocess_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/libgmxana_d.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/do_dssp_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/editconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/eneconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genbox_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genconf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genrestr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmtraj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_ndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/mk_angndx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjcat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjconv_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/trjorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wheel_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xpm2ps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/genion_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anadock_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/make_edi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_analyze_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_anaeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_angle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bundle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_chi_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_cluster_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_confrms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_covar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_current_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_density_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densmap_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dih_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dielectric_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helixorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_principal_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dipoles_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_disre_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dyndom_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_enemat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_energy_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_lie_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_filter_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_gyrate_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_h2order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hbond_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_helix_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mindist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_msd_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_morph_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmeig_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_nmens_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_order_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_kinetics_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_polystat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_potential_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rdf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rms_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotacf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_saltbr_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sas_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_select_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sgangle_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sorient_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spol_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_spatial_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tcaf_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_traj_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_tune_pme_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_vanhove_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_velacc_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_clustsize_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_mdmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_wham_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_sigeps_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_bar_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_membed_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rmsdist_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_rotmat_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_options_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_dos_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_hydorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_densorder_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig/libgmxana_d.pc -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/ngmx_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_xrama_d -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.bash -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.zsh -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.csh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.zsh -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion.bash -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl -- Up-to-date: /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/basic-dp' rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*_d.1 dh_installman -pgromacs debian/man/g_*.1 for manpage in /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man/man1/*.1; do \ dh_link -pgromacs usr/share/man/man1/`basename ${manpage}` usr/share/man/man1/`basename ${manpage} .1`_d.1 ; \ done # man pages for a pair of Perl scripts are installed *after* the _d duplication, # as they have no double-precision variants. dh_installman -pgromacs debian/man/demux.1 debian/man/xplor2gmx.1 # this program is currently broken - keep it from shipping until fixed rm /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/g_pme_error_d # two lintian warnings are overridden: # - package-name-doesnt-match-sonames: the libraries are private to # GROMACS, and it's unlikely that any new package will start using # them; therefore, separate lib packages would just be bloat. # This is also overridden for the -mpich and -openmpi packages. # - shlib-with-executable-stack: it's a side effect of the ASM inner # loops (i386/amd64 only) dh_lintian -pgromacs dh_testdir dh_testroot dh_prep -pgromacs-mpich dh_installdirs -pgromacs-mpich /usr/bin/make -j2 -C build/mpich install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich' /usr/bin/make -j2 -C build/mpich-dp install-mdrun DESTDIR=/build/buildd/gromacs-4.5.5/debian/gromacs-mpich make[1]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[3]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 77%] Built target gmx make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 90%] Built target md make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [ 97%] Built target gmxpreprocess make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target mdrun make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' Scanning dependencies of target install-mdrun make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[4]: Entering directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Installing mdrun -- Install configuration: "Release" -- Install component: "libraries" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libmd_mpi_d.mpich.so -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so.6 -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/libgmxpreprocess_mpi_d.mpich.so -- Install configuration: "Release" -- Install component: "mdrun" -- Installing: /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/bin/mdrun_mpi_d.mpich make[4]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' [100%] Built target install-mdrun make[3]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[2]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' make[1]: Leaving directory `/build/buildd/gromacs-4.5.5/build/mpich-dp' dh_installman -pgromacs-mpich debian/man/mdrun_mpi.mpich.1 dh_link -pgromacs-mpich usr/share/man/man1/mdrun_mpi.mpich.1.gz usr/share/man/man1/mdrun_mpi_d.mpich.1.gz dh_lintian -pgromacs-mpich dh_testdir dh_testroot dh_prep -pgromacs-openmpi dh_testdir dh_testroot dh_prep -pgromacs-data -pgromacs-dev # remove a duplicated file rm -f /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor/gmxdemo/demo_d dh_installdirs -pgromacs-data mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/top \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/tutor \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/html \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/doc/gromacs mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/man \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/man # some of the default installation directories for documentation and # example shell scripts are not FHS-friendly; move them appropriately mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/GMXRC* \ /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/completion* \ /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific chmod 644 /build/buildd/gromacs-4.5.5/debian/gromacs-data/usr/share/gromacs/shell-specific/* dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-data/html dh_link -pgromacs-data usr/share/doc/gromacs/html usr/share/doc/gromacs-dev/html # one lintian warning is overridden: # - script-not-executable: demo scripts outside of ATH dh_lintian -pgromacs-data # rename a pair of Perl scripts to drop the .pl extension (Policy 10.4) mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/demux mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx.pl /build/buildd/gromacs-4.5.5/debian/gromacs/usr/bin/xplor2gmx dh_installdirs -pgromacs-dev mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/include /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/include # catch normal libraries plus all applicable MPI variants mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs/usr/lib/pkgconfig /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs-mpich/usr/lib/*.so /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/lib mv /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs/template /build/buildd/gromacs-4.5.5/debian/gromacs-dev/usr/share/gromacs/template rmdir /build/buildd/gromacs-4.5.5/debian/gromacs/usr/share/gromacs dh_testdir -s dh_testroot -s dh_installchangelogs -s dh_installdocs -s dh_strip -A dh_strip debug symbol extraction: all non-arch-all packages for this build platform armhf: gromacs gromacs-dev gromacs-mpich dh_strip debug symbol extraction: packages to act on: gromacs gromacs-dev gromacs-mpich dh_strip debug symbol extraction: ignored packages: gromacs is already stripped, ignoring gromacs-dev is already stripped, ignoring gromacs-mpich is already stripped, ignoring dh_link -s dh_compress -s dh_fixperms -s dh_makeshlibs -s dh_shlibdeps -pgromacs -L gromacs -l debian/gromacs/usr/lib dh_shlibdeps -pgromacs-mpich -L gromacs-mpich -l debian/gromacs-mpich/usr/lib dpkg-shlibdeps: warning: dependency on libmpl.so.1 could be avoided if "debian/gromacs-mpich/usr/lib/libgmx_mpi.mpich.so.6 debian/gromacs-mpich/usr/lib/libgmx_mpi_d.mpich.so.6" were not uselessly linked against it (they use none of its symbols). dh_gencontrol -s dpkg-gencontrol: warning: Depends field of package gromacs-dev: unknown substitution variable ${shlibs:Depends} dh_installdeb -s dh_md5sums -s dh_builddeb -s INFO: pkgstriptranslations version 109 pkgstriptranslations: processing gromacs (in debian/gromacs); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs/DEBIAN/control, package gromacs, directory debian/gromacs grep: ../gromacs-data/DEBIAN/control: No such file or directory Searching for duplicated docs in dependency gromacs-data... pkgstripfiles: Truncating usr/share/doc/gromacs/changelog.Debian.gz to topmost ten records dpkg-deb: warning: 'debian/gromacs/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs' in `../gromacs_4.5.5-1_armhf.deb'. INFO: pkgstriptranslations version 109 pkgstriptranslations: processing gromacs-dev (in debian/gromacs-dev); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-dev/DEBIAN/control, package gromacs-dev, directory debian/gromacs-dev Searching for duplicated docs in dependency gromacs... symlinking changelog.Debian.gz in gromacs-dev to file in gromacs dpkg-deb: warning: 'debian/gromacs-dev/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-dev' in `../gromacs-dev_4.5.5-1_armhf.deb'. INFO: pkgstriptranslations version 109 pkgstriptranslations: processing gromacs-mpich (in debian/gromacs-mpich); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/gromacs-mpich/DEBIAN/control, package gromacs-mpich, directory debian/gromacs-mpich pkgstripfiles: Truncating usr/share/doc/gromacs-mpich/changelog.Debian.gz to topmost ten records dpkg-deb: warning: 'debian/gromacs-mpich/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `gromacs-mpich' in `../gromacs-mpich_4.5.5-1_armhf.deb'. dpkg-genchanges -B -mUbuntu/armel Build Daemon >../gromacs_4.5.5-1_armhf.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build gromacs-4.5.5 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20111211-0501 chroot-autobuild/build/buildd/gromacs_4.5.5-1_armhf.deb: new debian package, version 2.0. size 5016524 bytes: control archive= 6328 bytes. 1215 bytes, 26 lines control 10783 bytes, 206 lines md5sums 135 bytes, 7 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 168 bytes, 8 lines shlibs Package: gromacs Version: 4.5.5-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 8816 Depends: gromacs-data (= 4.5.5-1), libc6 (>= 2.7), libfftw3-3, libgcc1 (>= 1:4.4.0), libx11-6, libxml2 (>= 2.7.4) Recommends: cpp Breaks: radiance (<= 3R8+20070924.dfsg-1) Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics simulator, with building and analysis tools GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . GROMACS offers entirely too many features for a brief description to do it justice. A more complete listing is available at . chroot-autobuild/build/buildd/gromacs-dev_4.5.5-1_armhf.deb: new debian package, version 2.0. size 287082 bytes: control archive= 7222 bytes. 1245 bytes, 27 lines control 14289 bytes, 215 lines md5sums 968 bytes, 43 lines * preinst #!/bin/sh Package: gromacs-dev Source: gromacs Version: 4.5.5-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 1433 Depends: gromacs (= 4.5.5-1), fftw3-dev Recommends: gromacs-data Suggests: gromacs-mpich (= 4.5.5-1), libmpich2-dev, lesstif2-dev, libx11-dev, zlib1g-dev Section: devel Priority: extra Homepage: http://www.gromacs.org/ Description: GROMACS molecular dynamics sim, development kit GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains header files and static libraries for development purposes, plus sample Makefiles. Development components for MPI-enabled builds are contained within the gromacs-mpich and gromacs-lam packages. chroot-autobuild/build/buildd/gromacs-mpich_4.5.5-1_armhf.deb: new debian package, version 2.0. size 3154242 bytes: control archive= 2248 bytes. 1222 bytes, 27 lines control 906 bytes, 13 lines md5sums 1773 bytes, 57 lines * postinst #!/bin/sh 132 bytes, 7 lines * postrm #!/bin/sh 318 bytes, 22 lines * prerm #!/bin/sh 222 bytes, 6 lines shlibs Package: gromacs-mpich Source: gromacs Version: 4.5.5-1 Architecture: armhf Maintainer: Ubuntu Developers Original-Maintainer: Debichem Team Installed-Size: 4889 Depends: libc6 (>= 2.7), libfftw3-3, libgcc1 (>= 1:4.4.0), libmpich2-3, libxml2 (>= 2.7.4), mpich2 Recommends: gromacs Suggests: gromacs-data Section: science Priority: extra Homepage: http://www.gromacs.org/ Description: Molecular dynamics sim, binaries for MPICH parallelization GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles. . It is primarily designed for biochemical molecules like proteins and lipids that have a lot of complicated bonded interactions, but since GROMACS is extremely fast at calculating the nonbonded interactions (that usually dominate simulations) many groups are also using it for research on non- biological systems, e.g. polymers. . This package contains only the core simulation engine with parallel support using the MPICH (v2) interface. It is suitable for nodes of a processing cluster, or for multiprocessor machines. chroot-autobuild/build/buildd/gromacs_4.5.5-1_armhf.deb: drwxr-xr-x root/root 0 2011-12-11 04:59 ./ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/lib/ -rw-r--r-- root/root 1122012 2011-12-11 04:59 ./usr/lib/libgmxana.so.6 -rw-r--r-- root/root 318024 2011-12-11 04:59 ./usr/lib/libgmxpreprocess.so.6 -rw-r--r-- root/root 560044 2011-12-11 04:59 ./usr/lib/libmd.so.6 -rw-r--r-- root/root 1124172 2011-12-11 04:59 ./usr/lib/libgmxana_d.so.6 -rw-r--r-- root/root 555924 2011-12-11 04:59 ./usr/lib/libmd_d.so.6 -rw-r--r-- root/root 318068 2011-12-11 04:59 ./usr/lib/libgmxpreprocess_d.so.6 -rw-r--r-- root/root 1583616 2011-12-11 04:59 ./usr/lib/libgmx_d.so.6 -rw-r--r-- root/root 1444372 2011-12-11 04:59 ./usr/lib/libgmx.so.6 drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/ drwxr-xr-x root/root 0 2011-12-11 04:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/doc/gromacs/ -rw-r--r-- root/root 2276 2011-12-11 05:01 ./usr/share/doc/gromacs/changelog.Debian.gz -rw-r--r-- root/root 203 2011-09-21 12:34 ./usr/share/doc/gromacs/AUTHORS -rw-r--r-- root/root 1828 2011-12-11 04:10 ./usr/share/doc/gromacs/copyright -rw-r--r-- root/root 3993 2011-12-11 04:10 ./usr/share/doc/gromacs/README -rw-r--r-- root/root 2583 2011-12-11 04:10 ./usr/share/doc/gromacs/README.Debian drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 209 2011-12-11 04:10 ./usr/share/lintian/overrides/gromacs drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/bin/ -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_nmens_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rms_d -rwxr-xr-x root/root 5536 2011-12-11 04:59 ./usr/bin/g_luck -rwxr-xr-x root/root 22068 2011-12-11 04:59 ./usr/bin/make_ndx -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_kinetics_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_msd -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rms -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_potential_d -rwxr-xr-x root/root 18376 2011-12-11 04:59 ./usr/bin/g_x2top_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_h2order -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_polystat -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/genconf_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_sas_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_densmap -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_bar_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dos_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_potential -rwxr-xr-x root/root 121248 2011-12-11 04:59 ./usr/bin/mdrun -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_lie -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rmsdist -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rmsf_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_nmtraj -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_energy -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/genbox -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_clustsize -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dielectric_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_spol -rwxr-xr-x root/root 34868 2011-12-11 04:59 ./usr/bin/grompp -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rotmat -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_mdmat -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_morph -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_energy_d -rwxr-xr-x root/root 9704 2011-12-11 04:59 ./usr/bin/g_protonate_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dos -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_helix_d -rwxr-xr-x root/root 5536 2011-12-11 04:59 ./usr/bin/g_luck_d -rwxr-xr-x root/root 18044 2011-12-11 04:59 ./usr/bin/do_dssp -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_cluster -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_saltbr -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_clustsize_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_confrms -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dih -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_helixorient -rwxr-xr-x root/root 18044 2011-12-11 04:59 ./usr/bin/do_dssp_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_sham_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_densorder_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_select_d -rwxr-xr-x root/root 22264 2011-12-11 04:59 ./usr/bin/gmxcheck -rwxr-xr-x root/root 74508 2011-12-11 04:59 ./usr/bin/ngmx_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/genconf -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dipoles -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dyndom -rwxr-xr-x root/root 5512 2011-12-11 04:59 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./usr/bin/g_sgangle -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_h2order_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_mindist_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_bond -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_rdf -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_covar -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_spatial_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_analyze -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/trjcat -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_dielectric -rwxr-xr-x root/root 9712 2011-12-11 04:59 ./usr/bin/mk_angndx -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_helixorient_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_bond_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_wheel -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_hbond_d -rwxr-xr-x root/root 5512 2011-12-11 04:59 ./usr/bin/g_hydorder_d -rwxr-xr-x root/root 18036 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./usr/share/doc/ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/doc/gromacs-mpich/ -rw-r--r-- root/root 2277 2011-12-11 05:01 ./usr/share/doc/gromacs-mpich/changelog.Debian.gz -rw-r--r-- root/root 1828 2011-12-11 04:10 ./usr/share/doc/gromacs-mpich/copyright -rw-r--r-- root/root 1427 2011-12-11 04:56 ./usr/share/doc/gromacs-mpich/README.Debian drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 77 2011-12-11 04:10 ./usr/share/lintian/overrides/gromacs-mpich drwxr-xr-x root/root 0 2011-12-11 04:59 ./usr/bin/ -rwxr-xr-x root/root 121232 2011-12-11 04:59 ./usr/bin/mdrun_mpi_d.mpich -rwxr-xr-x root/root 121224 2011-12-11 04:59 ./usr/bin/mdrun_mpi.mpich lrwxrwxrwx root/root 0 2011-12-11 04:59 ./usr/share/man/man1/mdrun_mpi_d.mpich.1.gz -> mdrun_mpi.mpich.1.gz gromacs_4.5.5-1_armhf.changes: Format: 1.8 Date: Wed, 21 Sep 2011 19:10:08 -0700 Source: gromacs Binary: gromacs gromacs-data gromacs-dev gromacs-mpich gromacs-openmpi Architecture: armhf Version: 4.5.5-1 Distribution: precise Urgency: low Maintainer: Ubuntu/armel Build Daemon Changed-By: Nicholas Breen Description: gromacs - Molecular dynamics simulator, with building and analysis tools gromacs-data - GROMACS molecular dynamics sim, data and documentation gromacs-dev - GROMACS molecular dynamics sim, development kit gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization Changes: gromacs (4.5.5-1) unstable; urgency=low . * New upstream release. - Remove patches/30_git_release-4.5-patches.dpatch. - man/g_dos.1: Create man page for new binary. * rules: Add build-arch/build-indep targets. Add preliminary support for building GPU-accelerated binaries: set DEB_BUILD_OPTIONS=gpu to try it. * patches/31_manpages.dpatch: Update. Checksums-Sha1: 01e17de943b27c21247093398ba09521c6bea8bf 5016524 gromacs_4.5.5-1_armhf.deb a95fa3b42891c37f25aea94cad41915462675d46 287082 gromacs-dev_4.5.5-1_armhf.deb 37f411c56c69363a070bf1501c1e9f9639eba863 3154242 gromacs-mpich_4.5.5-1_armhf.deb Checksums-Sha256: 9640105aad8b04f88b29d45efe2a4471ff5c6b9aa681bc0f0ff4c845974a1f17 5016524 gromacs_4.5.5-1_armhf.deb 7363db9cc799d399d9528d7e029fda6f99e9939cda68753beeda475d8e463942 287082 gromacs-dev_4.5.5-1_armhf.deb 5db66cbdd54d3dcf96fcc227a79c0810b52bfc93388d3f7655c76bd64b67141e 3154242 gromacs-mpich_4.5.5-1_armhf.deb Files: 44e09ff5e88a3d39ebb8b0dbb68fef6e 5016524 science extra gromacs_4.5.5-1_armhf.deb 80be3a92d6803a061dfdc1dfaf6f9ec2 287082 devel extra gromacs-dev_4.5.5-1_armhf.deb 0b98858e68126dea8a5df8ce9823aaaa 3154242 science extra gromacs-mpich_4.5.5-1_armhf.deb ****************************************************************************** Built successfully Purging chroot-autobuild/build/buildd/gromacs-4.5.5 ------------------------------------------------------------------------------ /usr/bin/sudo dpkg --purge groff-base libx11-data libxdmcp-dev fontconfig-config ttf-dejavu-core gettext file zlib1g-dev openssl libfftw3-dev libroken18-heimdal x11-common libx11-dev libcroco3 libkrb5-26-heimdal x11proto-print-dev libxt-dev libpopt0 librtmp0 libgettextpo0 libfreetype6 libice-dev libfreetype6-dev libxcb1 x11proto-input-dev libldap-2.4-2 libcurl3 libexpat1-dev lesstif2 html2text libgcrypt11 libpthread-stubs0 debhelper libfontconfig1 libkeyutils1 libidn11 libgnutls26 libmagic1 libheimntlm0-heimdal libexpat1 bsdmainutils libxp-dev libxau6 libx11-6 libfftw3-3 libmpich2-3 xtrans-dev libp11-kit0 xorg-sgml-doctools x11proto-core-dev lesstif2-dev libsasl2-2 libxmlrpc-core-c3 dpatch libasn1-8-heimdal libxcb1-dev libxt6 libtasn1-3 libxdmcp6 libgssapi3-heimdal po-debconf libcr-dev libk5crypto3 emacsen-common libheimbase1-heimdal libxft-dev libhx509-5-heimdal libgsl0-dev libxml2 cmake-data x11proto-xext-dev libcurl3-gnutls pkg-config libkrb5support0 man-db cmake libice6 x11proto-kb-dev intltool-debian libxp6 libxrender1 libfontconfig1-dev libxml2-dev libxext-dev libpthread-stubs0-dev libcr0 ucf libxau-dev libgpg-error0 ca-certificates libxrender-dev gettext-base libhcrypto4-heimdal libwind0-heimdal libarchive1 libunistring0 libsm6 libxft2 x11proto-render-dev libxext6 libpipeline1 libsqlite3-0 libmpich2-dev libgsl0ldbl libgssapi-krb5-2 libkrb5-3 libsm-dev (Reading database ... 16326 files and directories currently installed.) Removing libfftw3-dev ... Removing debhelper ... Removing libfftw3-3 ... Purging configuration files for libfftw3-3 ... Removing lesstif2-dev ... Removing dpatch ... Purging configuration files for dpatch ... Removing po-debconf ... Removing libxft-dev ... Removing libgsl0-dev ... Removing man-db ... Purging configuration files for man-db ... Removing catpages as well as /var/cache/man hierarchy. Removing cmake ... Removing intltool-debian ... Removing libfontconfig1-dev ... Removing libxml2-dev ... Removing libxrender-dev ... Removing libarchive1 ... Purging configuration files for libarchive1 ... Removing libxft2 ... Purging configuration files for libxft2 ... Removing x11proto-render-dev ... Removing libpipeline1 ... Purging configuration files for libpipeline1 ... Removing libmpich2-dev ... Purging configuration files for libmpich2-dev ... Removing libgsl0ldbl ... Purging configuration files for libgsl0ldbl ... Removing groff-base ... Purging configuration files for groff-base ... Removing gettext ... Removing file ... Removing libxt-dev ... Removing libgettextpo0 ... Removing libfreetype6-dev ... Removing libexpat1-dev ... Removing lesstif2 ... Purging configuration files for lesstif2 ... Removing html2text ... Purging configuration files for html2text ... Removing libfontconfig1 ... Purging configuration files for libfontconfig1 ... Removing libmagic1 ... Purging configuration files for libmagic1 ... Removing libexpat1 ... Purging configuration files for libexpat1 ... Removing libxp-dev ... Removing libmpich2-3 ... Purging configuration files for libmpich2-3 ... Removing libxmlrpc-core-c3 ... Purging configuration files for libxmlrpc-core-c3 ... Removing libxt6 ... Purging configuration files for libxt6 ... Removing libcr-dev ... Removing cmake-data ... Purging configuration files for cmake-data ... Removing libcurl3-gnutls ... Purging configuration files for libcurl3-gnutls ... Removing pkg-config ... Removing libxp6 ... Purging configuration files for libxp6 ... Removing libxrender1 ... Purging configuration files for libxrender1 ... Removing libxext-dev ... Removing libcr0 ... Purging configuration files for libcr0 ... Removing gettext-base ... Removing libunistring0 ... Purging configuration files for libunistring0 ... Removing libxext6 ... Purging configuration files for libxext6 ... Removing libsm-dev ... Removing fontconfig-config ... Purging configuration files for fontconfig-config ... Removing ttf-dejavu-core ... Removing zlib1g-dev ... Removing libx11-dev ... Removing libcroco3 ... Purging configuration files for libcroco3 ... Removing x11proto-print-dev ... Removing libpopt0 ... Purging configuration files for libpopt0 ... Removing libfreetype6 ... Purging configuration files for libfreetype6 ... Removing libice-dev ... Removing libcurl3 ... Purging configuration files for libcurl3 ... Removing libidn11 ... Purging configuration files for libidn11 ... Removing libx11-6 ... Purging configuration files for libx11-6 ... Removing xtrans-dev ... Removing libxcb1-dev ... Removing emacsen-common ... emacsen-common: Handling removal of emacsen flavor emacs Purging configuration files for emacsen-common ... Removing libxml2 ... Purging configuration files for libxml2 ... Removing x11proto-xext-dev ... Removing x11proto-kb-dev ... Removing libpthread-stubs0-dev ... Removing ucf ... Purging configuration files for ucf ... Removing libxau-dev ... Removing ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Purging configuration files for ca-certificates ... Removing dangling symlinks from /etc/ssl/certs... done. Removing libsm6 ... Purging configuration files for libsm6 ... Removing libgssapi-krb5-2 ... Purging configuration files for libgssapi-krb5-2 ... Removing libkrb5-3 ... Purging configuration files for libkrb5-3 ... Removing libx11-data ... Removing libxdmcp-dev ... Removing openssl ... Purging configuration files for openssl ... Removing librtmp0 ... Purging configuration files for librtmp0 ... Removing libxcb1 ... Purging configuration files for libxcb1 ... Removing x11proto-input-dev ... Removing libldap-2.4-2 ... Purging configuration files for libldap-2.4-2 ... Removing libpthread-stubs0 ... Removing libkeyutils1 ... Purging configuration files for libkeyutils1 ... Removing libgnutls26 ... Purging configuration files for libgnutls26 ... Removing bsdmainutils ... Purging configuration files for bsdmainutils ... Removing libxau6 ... Purging configuration files for libxau6 ... Removing libp11-kit0 ... Purging configuration files for libp11-kit0 ... Removing x11proto-core-dev ... Removing libsasl2-2 ... Purging configuration files for libsasl2-2 ... Removing libtasn1-3 ... Purging configuration files for libtasn1-3 ... Removing libxdmcp6 ... Purging configuration files for libxdmcp6 ... Removing libgssapi3-heimdal ... Purging configuration files for libgssapi3-heimdal ... Removing libk5crypto3 ... Purging configuration files for libk5crypto3 ... Removing libkrb5support0 ... Purging configuration files for libkrb5support0 ... Removing libice6 ... Purging configuration files for libice6 ... Removing x11-common ... invoke-rc.d: policy-rc.d denied execution of stop. Purging configuration files for x11-common ... Removing libgcrypt11 ... Purging configuration files for libgcrypt11 ... Removing libheimntlm0-heimdal ... Purging configuration files for libheimntlm0-heimdal ... Removing xorg-sgml-doctools ... Removing libgpg-error0 ... Purging configuration files for libgpg-error0 ... Removing libkrb5-26-heimdal ... Purging configuration files for libkrb5-26-heimdal ... Removing libheimbase1-heimdal ... Purging configuration files for libheimbase1-heimdal ... Removing libhx509-5-heimdal ... Purging configuration files for libhx509-5-heimdal ... Removing libhcrypto4-heimdal ... Purging configuration files for libhcrypto4-heimdal ... Removing libwind0-heimdal ... Purging configuration files for libwind0-heimdal ... Removing libsqlite3-0 ... Purging configuration files for libsqlite3-0 ... Removing libasn1-8-heimdal ... Purging configuration files for libasn1-8-heimdal ... Removing libroken18-heimdal ... Purging configuration files for libroken18-heimdal ... Processing triggers for libc-bin ... ldconfig deferred processing now taking place ****************************************************************************** Finished at 20111211-0501 Build needed 00:50:59, 200800k disk space Can't open average time db /var/debbuild/avg-build-times Can't open average space db /var/debbuild/avg-build-space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['/usr/share/launchpad-buildd/slavebin/scan-for-processes', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa'] Scanning for processes to kill in build /home/buildd/build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa'] Unmounting chroot for build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa... none /home/buildd/build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa/chroot-autobuild/proc proc rw,relatime 0 0 none /home/buildd/build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa/chroot-autobuild/dev/pts devpts rw,relatime,mode=600,ptmxmode=000 0 0 none /home/buildd/build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa/chroot-autobuild/sys sysfs rw,relatime 0 0 none /home/buildd/build-7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa/chroot-autobuild/dev/shm tmpfs rw,relatime 0 0 RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', '7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa'] Removing build 7f8e6649fe3453784b2e19c85ff6ec0dfb48a3aa