Change log for hhsuite package in Ubuntu

hhsuite (3.3.0+ds-8) unstable; urgency=medium

  * Team upload.
  * gcc-13.patch: new: fix ftbfs with gcc 13. (Closes: #1037689)
  * d/control: declare compliance to standards version 4.6.2.

 -- Étienne Mollier <email address hidden>  Sun, 13 Aug 2023 10:47:11 +0200

Available diffs

• diff from 3.3.0+ds-7 to 3.3.0+ds-8 (925 bytes)

hhsuite (3.3.0+ds-7) unstable; urgency=medium

  * Fix watchfile.
  * Bump Standards-Version.
  * Update date in d/copyright.

 -- Sascha Steinbiss <email address hidden>  Tue, 25 Oct 2022 15:17:24 +0200

Available diffs

• diff from 3.3.0+ds-6 to 3.3.0+ds-7 (828 bytes)

hhsuite (3.3.0+ds-6) unstable; urgency=medium

  * Adjust patch to not overwrite example files in tests.
    This caused a modified file containing the build time to be packaged,
    leaving the package unreproducible (and is likely not intended here)

 -- Sascha Steinbiss <email address hidden>  Mon, 22 Nov 2021 22:27:31 +0100

Available diffs

• diff from 3.3.0+ds-5 to 3.3.0+ds-6 (1022 bytes)

hhsuite (3.3.0+ds-5) unstable; urgency=medium

  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)
  * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine-
    update)
  * Remove trailing whitespace in debian/copyright (routine-update)

 -- Andreas Tille <email address hidden>  Wed, 13 Oct 2021 14:36:58 +0200

Available diffs

• diff from 3.3.0+ds-4 to 3.3.0+ds-5 (1.5 KiB)

hhsuite (3.3.0+ds-4) unstable; urgency=medium

  * Team upload.
  * Fix tests on non-x86.
  * Include Built-Using: ${simde:Built-Using} to satisfy GPL requirements

 -- Michael R. Crusoe <email address hidden>  Wed, 02 Sep 2020 15:39:19 +0200

Available diffs

• diff from 3.2.0-3 to 3.3.0+ds-4 (86.2 KiB)

hhsuite (3.2.0-2build1) focal; urgency=medium

  * No-change rebuild for libgcc-s1 package name change.

 -- Matthias Klose <email address hidden>  Mon, 23 Mar 2020 07:16:06 +0100

Available diffs

• diff from 3.2.0-2 (in Debian) to 3.2.0-2build1 (315 bytes)

hhsuite (3.2.0-3) unstable; urgency=medium

  [ Steffen Möller ]
  * Added ref to conda

  [ Frédéric Bonnard ]
  * Enable ppc64el

  [ Andreas Tille ]
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.
  * Remove obsolete fields Contact, Name from debian/upstream/metadata
    (already present in machine-readable debian/copyright).

 -- Andreas Tille <email address hidden>  Tue, 17 Mar 2020 09:50:48 +0100

Available diffs

• diff from 3.2.0-2build1 (in Ubuntu) to 3.2.0-3 (1.7 KiB)

hhsuite (3.2.0-2) unstable; urgency=medium

  [ Santiago Vila ]
  * Fix FTBFS when built with dpkg-buildpackage -A
    Closes: #932912

  [ Andreas Tille ]
  * debhelper-compat 12
  * Standards-Version: 4.4.0
  * Fix autopkgtest

 -- Andreas Tille <email address hidden>  Thu, 25 Jul 2019 03:06:04 +0200

Available diffs

• diff from 3.2.0-1 to 3.2.0-2 (1.1 KiB)

hhsuite (3.2.0-1) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * Team upload.
  * New upstream release.
    "Added hhsearch_omp, hhsearch_mpi, hhalign_omp and haling_mpi binaries
     Removed non-GPLv3 compatible code
     ffindex_apply_mpi will not crash anymore on systems with low amount of
       virtual memory"
  * The non-GPLv3 code was in src/hhprefilter.cpp; now gone
  * Mark hhsuite-data as Multi-Arch: foreign
  * Drop hhsuite-doc: documentation moved by upstream to
    https://github.com/soedinglab/hh-suite/wiki
  * Removed '-march=native'

  [ Andrius Merkys ]
  * Revoking executable permission from Perl modules.

 -- Michael R. Crusoe <email address hidden>  Tue, 23 Jul 2019 12:06:51 +0200

Available diffs

• diff from 3.0~beta3+dfsg-3 to 3.2.0-1 (831.2 KiB)

hhsuite (3.0~beta3+dfsg-3) unstable; urgency=high

  * Team upload

  [ Andreas Tille ]
  * Build against ffindex (>= 0.9.9.8)

  [ Michael R. Crusoe ]
  * Don't build with -march=native

 -- Michael R. Crusoe <email address hidden>  Fri, 15 Feb 2019 10:06:44 -0800

Available diffs

• diff from 3.0~beta3+dfsg-2 to 3.0~beta3+dfsg-3 (1.3 KiB)

hhsuite (3.0~beta3+dfsg-2) unstable; urgency=medium

  * Install context_data.crf (Thanks for the patch to Andrius Merkys
    <email address hidden>)
    Closes: #918765
  * Add autopkgtest reproducing the issue of bug #918765
  * debhelper 11
  * Standards-Version: 4.3.0
  * Secure URI in copyright format
  * Remove trailing whitespace in debian/copyright
  * Do not parse d/changelog
  * Add versioned (Build-)Depends: ffindex
    (>= 0.9.9.7.soedinglab+git20171201.74550c8)
  * Adapt doc-base file to debhelper 11 location

 -- Andreas Tille <email address hidden>  Wed, 09 Jan 2019 17:36:27 +0100

Available diffs

• diff from 3.0~beta3+dfsg-1 to 3.0~beta3+dfsg-2 (2.0 KiB)

hhsuite (3.0~beta3+dfsg-1) unstable; urgency=medium

  [ Steffen Moeller ]
  * New upstream version.
  * debian/upstream/metadata:
    - yamllint cleanliness
    - Added references to registries
  * d/control
    - compliance with policy 4.2
    - adapted Vcs URLs to salsa.d.o
  * Caveat: Does not compile with openmpi libraries discovered.
    See README.source.

  [ Andreas Tille ]
  * Fix Vcs-Browser
  * Do not parse d/changelog to obtain version

 -- Andreas Tille <email address hidden>  Tue, 21 Aug 2018 21:09:09 +0200

Available diffs

• diff from 3.0~beta2+dfsg-3 to 3.0~beta3+dfsg-1 (72.1 KiB)

hhsuite (3.0~beta2+dfsg-3) unstable; urgency=medium

  * Specify correct format in printf statement (Thanks for the patch to
    Daniel Shahaf <email address hidden>)
    Closes: #851764

 -- Andreas Tille <email address hidden>  Wed, 18 Jan 2017 16:52:21 +0100

Available diffs

• diff from 3.0~beta2+dfsg-2 to 3.0~beta2+dfsg-3 (1.1 KiB)

hhsuite (3.0~beta2+dfsg-2) unstable; urgency=medium

  * Really fix watch file to fetch latest version
  * debhelper 10
  * simplify d/rules to make it more readable
  * drop -dbg file

 -- Andreas Tille <email address hidden>  Wed, 18 Jan 2017 12:06:40 +0100

Available diffs

• diff from 3.0~beta2+dfsg-1 to 3.0~beta2+dfsg-2 (1.5 KiB)

hhsuite (3.0~beta2+dfsg-1) unstable; urgency=medium

  [ Andreas Tille ]
  * Fixed watch file

  [ Sascha Steinbiss ]
  * New upstream release.
    Closes: #846487
  * Massive rework of packaging due to new upstream code and build system.
  * Migrate to git.

 -- Sascha Steinbiss <email address hidden>  Sat, 14 Jan 2017 15:23:25 +0000

Available diffs

• diff from 2.0.16-7 to 3.0~beta2+dfsg-1 (4.0 MiB)

hhsuite (2.0.16-7) unstable; urgency=medium

  * Use system defined log2 and log10 to enable build using gcc-6.1
    Closes: #831115
  * cme fix dpkg-control
  * fix spelling
  * hardening=+all

 -- Andreas Tille <email address hidden>  Sat, 13 Aug 2016 07:49:16 +0200

Available diffs

• diff from 2.0.16-6 to 2.0.16-7 (3.9 KiB)

hhsuite (2.0.16-6) unstable; urgency=medium

  * Versioned Build-Depends ffindex0-dev (>= 0.9.9.6-2)
    Closes: #802076

 -- Andreas Tille <email address hidden>  Sun, 18 Oct 2015 07:53:08 +0200

Available diffs

• diff from 2.0.16-5 to 2.0.16-6 (522 bytes)

hhsuite (2.0.16-5) unstable; urgency=medium


  * Add Replaces: hhsuite which was missing as well

 -- Andreas Tille <email address hidden>  Fri, 07 Nov 2014 07:08:34 +0100

Available diffs

• diff from 2.0.16-4 to 2.0.16-5 (529 bytes)

hhsuite (2.0.16-4) unstable; urgency=medium


  * Add missing Breaks statement for hhsuite-doc
    Closes: #768114

 -- Andreas Tille <email address hidden>  Wed, 05 Nov 2014 07:21:05 +0100

Available diffs

• diff from 2.0.16-3 to 2.0.16-4 (549 bytes)

hhsuite (2.0.16-3) unstable; urgency=medium


  * hhsuite Breaks hhsuite-data (<= 2.0.16-1)
    Closes: #765066
  * Priority: optional
  * Debhelper 9
  * cme fix dpkg-control
  * DEP5 fix
  * *-doc and *-data package are Architecture: all

 -- Andreas Tille <email address hidden>  Mon, 13 Oct 2014 14:44:05 +0200

Available diffs

• diff from 2.0.16-2 to 2.0.16-3 (3.3 KiB)

hhsuite (2.0.16-2) unstable; urgency=low


  [Steffen Moeller]
  * Bumped standard to 3.9.4.
  * Removed DMUA flag.
  * Created new -doc package and moved user guide to it
  * Moved scripts directory from hhsuite-data to hhsuite
  * Added CHANGES file to .docs
  * joined hardening patch with rest1

  [Laszlo Kajan]
  * Bumped standard to 3.9.5.
  * Pulled 2.0.16-1 -> 2.0.16-1u1 changes from Ubuntu: arch all packages are
    now amd64, since all arch dep packages are also amd64.
  * Completed Steffen's changes.
  * Removed libpng12-dev dependency by disabling png feature. (Closes: #742579)

 -- Laszlo Kajan <email address hidden>  Mon, 08 Sep 2014 19:32:43 +0200

Available diffs

• diff from 2.0.16-1ubuntu1 (in Ubuntu) to 2.0.16-2 (4.4 KiB)

hhsuite (2.0.16-1ubuntu1) saucy; urgency=low

  * Make hhsuite-data Architecture: amd64 even though it contains
    architecture-independent files; it's useless on other architectures, and
    an Architecture: all package does not get built on Ubuntu build daemons
    unless either all binary packages are Architecture: all or at least one
    package builds on i386.
 -- Colin Watson <email address hidden>   Wed, 02 Oct 2013 13:50:20 +0100

Available diffs

• diff from 2.0.16-1 (in Debian) to 2.0.16-1ubuntu1 (863 bytes)

hhsuite (2.0.16-1) unstable; urgency=low


  * New upstream release.
  * Updated d/watch file.

 -- Laszlo Kajan <email address hidden>  Mon, 24 Sep 2012 09:32:14 +0200

Available diffs

• diff from 2.0.15-1 to 2.0.16-1 (204.0 KiB)

hhsuite (2.0.15-1) unstable; urgency=low


  * New upstream release.

 -- Laszlo Kajan <email address hidden>  Wed, 27 Jun 2012 14:17:05 +0200

Available diffs

• diff from 2.0.14-1 to 2.0.15-1 (26.3 KiB)

hhsuite (2.0.14-1) unstable; urgency=low


  * [Andreas Tille <email address hidden>]
    debian/upstream: Enhanced author values
  * [Laszlo Kajan <email address hidden>]
    New upstream release.

 -- Laszlo Kajan <email address hidden>  Wed, 23 May 2012 10:52:40 +0200

Available diffs

• diff from 2.0.13-2 to 2.0.14-1 (397.6 KiB)

hhsuite (2.0.13-2) unstable; urgency=low


  * [Andreas Tille <email address hidden>]
    debian/upstream:
     - it is (now) possible to support more than one citation
     - more verbose citation information
  * [Laszlo Kajan <<email address hidden>]
    Added #include <unistd.h> to src/hhsearch.C in order to fix compilation
    issue with g++-4.7. (Closes: #667201)

 -- Laszlo Kajan <email address hidden>  Wed, 04 Apr 2012 13:45:49 +0200