https://launchpad.net/ubuntu/+source/hilive/2.0a-3build4/+build/27576554 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lcy02-amd64-048 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 Buildd toolchain package versions: launchpad-buildd_235~645~ubuntu20.04.1 python3-lpbuildd_235~645~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.11 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1.1. Syncing the system clock with the buildd NTP service... 19 Dec 15:14:20 ntpdate[1857]: adjust time server 10.131.248.1 offset 0.000306 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576554 --image-type chroot /home/buildd/filecache-default/1fe94ca8758119221c8de2550665a1bb335bd6a9 Creating target for build PACKAGEBUILD-27576554 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576554 Starting target for build PACKAGEBUILD-27576554 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576554 'deb http://ftpmaster.internal/ubuntu noble main universe' 'deb http://ftpmaster.internal/ubuntu noble-security main universe' 'deb http://ftpmaster.internal/ubuntu noble-updates main universe' 'deb http://ftpmaster.internal/ubuntu noble-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-27576554 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576554 Updating target for build PACKAGEBUILD-27576554 Get:1 http://ftpmaster.internal/ubuntu noble InRelease [240 kB] Get:2 http://ftpmaster.internal/ubuntu noble-security InRelease [74.9 kB] Get:3 http://ftpmaster.internal/ubuntu noble-updates InRelease [74.9 kB] Get:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease [102 kB] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 Packages [1406 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 Packages [15.0 MB] Get:8 http://ftpmaster.internal/ubuntu noble/universe Translation-en [6031 kB] Get:9 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [160 kB] Get:10 http://ftpmaster.internal/ubuntu noble-proposed/main Translation-en [44.9 kB] Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1070 kB] Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe Translation-en [325 kB] Fetched 25.1 MB in 3s (7511 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libunistring2 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libunistring5 The following packages will be upgraded: apt apt-utils base-files base-passwd bash bash-completion binutils binutils-common binutils-x86-64-linux-gnu bsdextrautils bsdutils coreutils cpp cpp-13 debianutils diffutils dpkg dpkg-dev fakeroot g++ g++-13 gcc gcc-13 gcc-13-base grep init init-system-helpers krb5-locales libapparmor1 libapt-pkg6.0 libargon2-1 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcc1-0 libcryptsetup12 libctf-nobfd0 libctf0 libdb5.3 libdebconfclient0 libdpkg-perl libfakeroot libfdisk1 libffi8 libgcc-13-dev libgcc-s1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error-l10n libgpg-error0 libgprofng0 libgssapi-krb5-2 libhwasan0 libidn2-0 libitm1 libk5crypto3 libkmod2 libkrb5-3 libkrb5support0 liblsan0 liblzma5 libmount1 libncursesw6 libnsl-dev libnsl2 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libperl5.36 libpng16-16 libproc2-0 libquadmath0 libreadline8 libseccomp2 libselinux1 libsemanage-common libsemanage2 libsepol2 libsframe1 libsmartcols1 libsqlite3-0 libssl3 libstdc++-13-dev libstdc++6 libsystemd-shared libsystemd0 libtinfo6 libtirpc-common libtirpc-dev libtirpc3 libtsan2 libubsan1 libudev1 libuuid1 libxxhash0 libzstd1 linux-libc-dev login lto-disabled-list mawk mount ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.36 pinentry-curses procps readline-common systemd systemd-dev systemd-sysv sysvinit-utils tar ubuntu-keyring util-linux uuid-runtime xz-utils zlib1g 135 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 6093 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl-dev amd64 1.3.0-3 [71.2 kB] Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.38-3ubuntu1 [2114 kB] Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.38-3ubuntu1 [20.3 kB] Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-common all 1.3.4+ds-1 [7920 B] Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc-dev amd64 1.3.4+ds-1 [193 kB] Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgssapi-krb5-2 amd64 1.20.1-5build1 [142 kB] Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5-3 amd64 1.20.1-5build1 [346 kB] Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libk5crypto3 amd64 1.20.1-5build1 [81.3 kB] Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libkrb5support0 amd64 1.20.1-5build1 [33.2 kB] Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libssl3 amd64 3.0.10-1ubuntu3 [1910 kB] Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libtirpc3 amd64 1.3.4+ds-1 [81.4 kB] Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libnsl2 amd64 1.3.0-3 [41.3 kB] Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 linux-libc-dev amd64 6.6.0-14.14 [1580 kB] Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 13.2.0-9ubuntu1 [48.0 kB] Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libgprofng0 amd64 2.41.50.20231214-1ubuntu1 [858 kB] Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libctf0 amd64 2.41.50.20231214-1ubuntu1 [83.2 kB] Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libctf-nobfd0 amd64 2.41.50.20231214-1ubuntu1 [86.3 kB] Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-x86-64-linux-gnu amd64 2.41.50.20231214-1ubuntu1 [2510 kB] Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libbinutils amd64 2.41.50.20231214-1ubuntu1 [539 kB] Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 binutils-common amd64 2.41.50.20231214-1ubuntu1 [258 kB] Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 binutils amd64 2.41.50.20231214-1ubuntu1 [7696 B] Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-9ubuntu1 [45.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-s1 amd64 13.2.0-9ubuntu1 [63.1 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 13.2.0-9ubuntu1 [142 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 13.2.0-9ubuntu1 [29.5 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 13.2.0-9ubuntu1 [10.5 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 13.2.0-9ubuntu1 [2835 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 13.2.0-9ubuntu1 [1203 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 13.2.0-9ubuntu1 [2606 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 13.2.0-9ubuntu1 [1105 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 13.2.0-9ubuntu1 [1262 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 13.2.0-9ubuntu1 [153 kB] Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-9ubuntu1 [12.2 MB] Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-9ubuntu1 [2336 kB] Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-9ubuntu1 [2687 kB] Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-9ubuntu1 [21.5 MB] Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-9ubuntu1 [10.7 MB] Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++6 amd64 13.2.0-9ubuntu1 [771 kB] Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 zlib1g amd64 1:1.3.dfsg-3ubuntu1 [63.3 kB] Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libsframe1 amd64 2.41.50.20231214-1ubuntu1 [13.8 kB] Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [297 kB] Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.38-3ubuntu1 [3248 kB] Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 base-files amd64 13ubuntu5 [73.6 kB] Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 debianutils amd64 5.14 [89.0 kB] Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu1 [795 kB] Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 bsdutils amd64 1:2.39.2-6ubuntu1 [93.9 kB] Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 coreutils amd64 9.4-2ubuntu1 [1395 kB] Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 diffutils amd64 1:3.10-1 [176 kB] Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma5 amd64 5.4.5-0.1 [128 kB] Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libapparmor1 amd64 4.0.0~alpha2-0ubuntu7 [48.2 kB] Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit-common all 1:3.1.2-1 [5512 B] Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libcap-ng0 amd64 0.8.3-3 [15.3 kB] Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libaudit1 amd64 1:3.1.2-1 [46.7 kB] Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libblkid1 amd64 2.39.2-6ubuntu1 [122 kB] Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libkmod2 amd64 30+20230601-2ubuntu1 [51.4 kB] Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-8-0 amd64 10.42-4ubuntu1 [228 kB] Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libselinux1 amd64 3.5-1build2 [78.5 kB] Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libmount1 amd64 2.39.2-6ubuntu1 [132 kB] Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libpam0g amd64 1.5.2-9.1ubuntu1 [65.1 kB] Get:60 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libseccomp2 amd64 2.5.4-2ubuntu1 [49.3 kB] Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-sysv amd64 255-1ubuntu1 [11.7 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd-dev all 255-1ubuntu1 [98.5 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 systemd amd64 255-1ubuntu1 [3484 kB] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd-shared amd64 255-1ubuntu1 [2062 kB] Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libargon2-1 amd64 0~20190702+dfsg-4 [21.4 kB] Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libuuid1 amd64 2.39.2-6ubuntu1 [34.1 kB] Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libcryptsetup12 amd64 2:2.6.1-5ubuntu1 [242 kB] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libfdisk1 amd64 2.39.2-6ubuntu1 [145 kB] Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 mount amd64 2.39.2-6ubuntu1 [118 kB] Get:70 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libsystemd0 amd64 255-1ubuntu1 [427 kB] Get:71 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libudev1 amd64 255-1ubuntu1 [169 kB] Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libxxhash0 amd64 0.8.2-2 [25.5 kB] Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libapt-pkg6.0 amd64 2.7.7 [945 kB] Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 tar amd64 1.34+dfsg-1.2ubuntu2 [293 kB] Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg amd64 1.22.1ubuntu5 [1387 kB] Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 grep amd64 3.11-3 [161 kB] Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 login amd64 1:4.13+dfsg1-3ubuntu1 [201 kB] Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-bin amd64 6.4+20231209-1 [187 kB] Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libperl5.36 amd64 5.36.0-10ubuntu1 [4782 kB] Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 perl amd64 5.36.0-10ubuntu1 [235 kB] Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 perl-base amd64 5.36.0-10ubuntu1 [1770 kB] Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 perl-modules-5.36 all 5.36.0-10ubuntu1 [2984 kB] Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libdb5.3 amd64 5.3.28+dfsg2-4 [736 kB] Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm6 amd64 1.23-5 [33.3 kB] Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libgdbm-compat4 amd64 1.23-5 [6498 B] Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 util-linux amd64 2.39.2-6ubuntu1 [1120 kB] Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libdebconfclient0 amd64 0.271ubuntu1 [11.3 kB] Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 base-passwd amd64 3.6.3 [51.2 kB] Get:89 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init-system-helpers all 1.66ubuntu1 [39.4 kB] Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.38-3ubuntu1 [680 kB] Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 ncurses-base all 6.4+20231209-1 [25.2 kB] Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 sysvinit-utils amd64 3.08-3ubuntu1 [33.7 kB] Get:93 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt amd64 2.7.7 [1376 kB] Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 apt-utils amd64 2.7.7 [216 kB] Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 ubuntu-keyring all 2023.11.28.1 [11.1 kB] Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libunistring5 amd64 1.1-2 [537 kB] Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libidn2-0 amd64 2.3.4-1build1 [64.3 kB] Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 libffi8 amd64 3.4.4-2 [24.4 kB] Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libp11-kit0 amd64 0.25.3-2ubuntu2 [298 kB] Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libgnutls30 amd64 3.8.1-4ubuntu6 [988 kB] Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules-bin amd64 1.5.2-9.1ubuntu1 [47.6 kB] Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-modules amd64 1.5.2-9.1ubuntu1 [284 kB] Get:103 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 init amd64 1.66ubuntu1 [6186 B] Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libsmartcols1 amd64 2.39.2-6ubuntu1 [63.3 kB] Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 uuid-runtime amd64 2.39.2-6ubuntu1 [32.9 kB] Get:106 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error-l10n all 1.47-3build1 [8024 B] Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libgpg-error0 amd64 1.47-3build1 [70.0 kB] Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libpam-runtime all 1.5.2-9.1ubuntu1 [41.5 kB] Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage-common all 3.5-1build1 [9982 B] Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libsepol2 amd64 3.5-2 [300 kB] Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libsemanage2 amd64 3.5-1build1 [92.9 kB] Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libncursesw6 amd64 6.4+20231209-1 [147 kB] Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libtinfo6 amd64 6.4+20231209-1 [107 kB] Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 passwd amd64 1:4.13+dfsg1-3ubuntu1 [844 kB] Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 libproc2-0 amd64 2:4.0.4-2ubuntu1 [59.0 kB] Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 mawk amd64 1.3.4.20231126-1 [126 kB] Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 procps amd64 2:4.0.4-2ubuntu1 [708 kB] Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 krb5-locales all 1.20.1-5build1 [13.7 kB] Get:119 http://ftpmaster.internal/ubuntu noble/main amd64 readline-common all 8.2-3 [56.2 kB] Get:120 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline8 amd64 8.2-3 [152 kB] Get:121 http://ftpmaster.internal/ubuntu noble/main amd64 libsqlite3-0 amd64 3.44.2-1 [685 kB] Get:122 http://ftpmaster.internal/ubuntu noble/main amd64 openssl amd64 3.0.10-1ubuntu3 [1188 kB] Get:123 http://ftpmaster.internal/ubuntu noble/main amd64 bash-completion all 1:2.11-8 [180 kB] Get:124 http://ftpmaster.internal/ubuntu noble/main amd64 bsdextrautils amd64 2.39.2-6ubuntu1 [73.5 kB] Get:125 http://ftpmaster.internal/ubuntu noble/main amd64 libpng16-16 amd64 1.6.40-2 [186 kB] Get:126 http://ftpmaster.internal/ubuntu noble/main amd64 xz-utils amd64 5.4.5-0.1 [268 kB] Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-2ubuntu1 [1122 B] Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-2ubuntu1 [5166 B] Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-2ubuntu1 [29.0 kB] Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 dpkg-dev all 1.22.1ubuntu5 [1147 kB] Get:131 http://ftpmaster.internal/ubuntu noble/main amd64 libdpkg-perl all 1.22.1ubuntu5 [286 kB] Get:132 http://ftpmaster.internal/ubuntu noble/main amd64 lto-disabled-list all 44 [12.4 kB] Get:133 http://ftpmaster.internal/ubuntu noble/main amd64 libfakeroot amd64 1.32.2-1 [32.1 kB] Get:134 http://ftpmaster.internal/ubuntu noble/main amd64 fakeroot amd64 1.32.2-1 [67.1 kB] Get:135 http://ftpmaster.internal/ubuntu noble/main amd64 optipng amd64 0.7.7-3 [83.3 kB] Get:136 http://ftpmaster.internal/ubuntu noble/main amd64 pinentry-curses amd64 1.2.1-3ubuntu1 [34.9 kB] Preconfiguring packages ... 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Setting up libtirpc-dev:amd64 (1.3.4+ds-1) ... Setting up gcc-13 (13.2.0-9ubuntu1) ... Setting up libdpkg-perl (1.22.1ubuntu5) ... Setting up libnsl2:amd64 (1.3.0-3) ... Setting up gcc (4:13.2.0-2ubuntu1) ... Setting up dpkg-dev (1.22.1ubuntu5) ... Setting up libnsl-dev:amd64 (1.3.0-3) ... Setting up libc6-dev:amd64 (2.38-3ubuntu1) ... Setting up libstdc++-13-dev:amd64 (13.2.0-9ubuntu1) ... Setting up g++-13 (13.2.0-9ubuntu1) ... Setting up g++ (4:13.2.0-2ubuntu1) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... Processing triggers for debianutils (5.14) ... RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-27576554 amd64 noble-proposed -c chroot:build-PACKAGEBUILD-27576554 --arch=amd64 --dist=noble-proposed --nolog -A hilive_2.0a-3build4.dsc Initiating build PACKAGEBUILD-27576554 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 x86_64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on lcy02-amd64-048.buildd +==============================================================================+ | hilive 2.0a-3build4 (amd64) Tue, 19 Dec 2023 15:14:50 +0000 | +==============================================================================+ Package: hilive Version: 2.0a-3build4 Source Version: 2.0a-3build4 Distribution: noble-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 Build Type: binary I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-27576554/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/hilive-20cAcc/resolver-kMm0b4' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hilive_2.0a-3build4.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/hilive-20cAcc/hilive-2.0a' with '<>' I: NOTICE: Log filtering will replace 'build/hilive-20cAcc' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath, markdown, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 12), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath, markdown, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [446 B] Get:5 copy:/<>/apt_archive ./ Packages [526 B] Fetched 1929 B in 0s (169 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: apt-utils bash-completion ca-certificates debconf-i18n krb5-locales libgpg-error-l10n libgpm2 libip4tc2 liblocale-gettext-perl libnss-nis libnss-nisplus libtext-charwidth-perl libtext-iconv-perl libtext-wrapi18n-perl libunistring2 openssl psmisc uuid-runtime Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev chrpath cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu74 libjsoncpp25 libldap2 liblz4-dev liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db markdown po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost1.83-doc libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev libboost-contract1.83-dev libboost-coroutine1.83-dev libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev libboost-graph1.83-dev libboost-graph-parallel1.83-dev libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev libboost-mpi1.83-dev libboost-mpi-python1.83-dev libboost-numpy1.83-dev libboost-python1.83-dev libboost-random1.83-dev libboost-serialization1.83-dev libboost-stacktrace1.83-dev libboost-test1.83-dev libboost-thread1.83-dev libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.83-dev libcurl4-doc libgnutls28-dev libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libldap-common publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev chrpath cmake cmake-data debhelper debugedit dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base icu-devtools intltool-debian libarchive-zip-perl libarchive13 libboost-atomic1.83-dev libboost-atomic1.83.0 libboost-filesystem-dev libboost-filesystem1.83-dev libboost-filesystem1.83.0 libboost-iostreams-dev libboost-iostreams1.83-dev libboost-iostreams1.83.0 libboost-program-options-dev libboost-program-options1.83-dev libboost-program-options1.83.0 libboost-regex1.83-dev libboost-regex1.83.0 libboost-system-dev libboost-system1.83-dev libboost-system1.83.0 libboost1.83-dev libbrotli1 libcurl3-gnutls libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0 libdw1 libelf1 libexpat1 libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev libicu74 libjsoncpp25 libldap2 liblz4-dev liblzma-dev libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libseqan2-dev libssh-4 libsub-override-perl libtool libuchardet0 libuv1 libxml2 m4 man-db markdown po-debconf sbuild-build-depends-main-dummy zlib1g-dev 0 upgraded, 79 newly installed, 0 to remove and 0 not upgraded. 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amd64 chrpath amd64 0.16-2 [13.2 kB] Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libarchive13 amd64 3.7.2-1ubuntu2 [378 kB] Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2 [332 kB] Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-4 [20.1 kB] Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-4 [53.3 kB] Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libldap2 amd64 2.6.6+dfsg-1~exp1ubuntu1 [193 kB] Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build4 [58.2 kB] Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libssh-4 amd64 0.10.5-3ubuntu1 [187 kB] Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl4 amd64 8.4.0-2ubuntu1 [335 kB] Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libjsoncpp25 amd64 1.9.5-6 [82.3 kB] Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 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Get:61 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-iostreams1.83.0 amd64 1.83.0-1ubuntu3 [259 kB] Get:62 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-iostreams1.83-dev amd64 1.83.0-1ubuntu3 [264 kB] Get:63 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-iostreams-dev amd64 1.83.0.1ubuntu2 [4046 B] Get:64 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-program-options1.83.0 amd64 1.83.0-1ubuntu3 [320 kB] Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-program-options1.83-dev amd64 1.83.0-1ubuntu3 [388 kB] Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libboost-program-options-dev amd64 1.83.0.1ubuntu2 [4086 B] Get:67 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libboost-system-dev amd64 1.83.0.1ubuntu2 [4206 B] Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libcurl3-gnutls amd64 8.4.0-2ubuntu1 [328 kB] Get:69 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http://ftpmaster.internal/ubuntu noble/main amd64 liblz4-dev amd64 1.9.4-1 [87.6 kB] Preconfiguring packages ... 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Setting up autoconf (2.71-3) ... Setting up liblzma-dev:amd64 (5.4.5-0.1) ... Setting up libicu74:amd64 (74.2-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3ubuntu1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up libsub-override-perl (0.10-1) ... Setting up cmake-data (3.28.0-1) ... Setting up libboost-system1.83-dev:amd64 (1.83.0-1ubuntu3) ... Setting up libdeflate-dev:amd64 (1.18-1) ... Setting up libelf1:amd64 (0.190-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3build3) ... Setting up libldap2:amd64 (2.6.6+dfsg-1~exp1ubuntu1) ... Setting up chrpath (0.16-2) ... Setting up markdown (1.0.1-12) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libdw1:amd64 (0.190-1) ... Setting up gettext (0.21-14) ... Setting up libtool (2.4.7-7) ... Setting up libarchive13:amd64 (3.7.2-1ubuntu2) ... Setting up libboost-system-dev:amd64 (1.83.0.1ubuntu2) ... Setting up libcurl3-gnutls:amd64 (8.4.0-2ubuntu1) ... Setting up libboost-filesystem1.83-dev:amd64 (1.83.0-1ubuntu3) ... Setting up libcurl4-gnutls-dev:amd64 (8.4.0-2ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up icu-devtools (74.2-1ubuntu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up debugedit (1:5.0-5) ... Setting up libcurl4:amd64 (8.4.0-2ubuntu1) ... Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... Setting up libboost-filesystem-dev:amd64 (1.83.0.1ubuntu2) ... Setting up libhts3:amd64 (1.18+ds-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:amd64 (1.18+ds-1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /usr/lib/systemd/system/man-db.timer. Setting up libboost-regex1.83-dev:amd64 (1.83.0-1ubuntu3) ... Setting up cmake (3.28.0-1) ... Setting up libboost-iostreams1.83-dev:amd64 (1.83.0-1ubuntu3) ... Setting up debhelper (13.11.8ubuntu1) ... Setting up libboost-iostreams-dev:amd64 (1.83.0.1ubuntu2) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.38-3ubuntu1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-169-generic #187-Ubuntu SMP Thu Nov 23 14:52:28 UTC 2023 amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231214-1ubuntu1 dpkg-dev_1.22.1ubuntu5 g++-13_13.2.0-9ubuntu1 gcc-13_13.2.0-9ubuntu1 libc6-dev_2.38-3ubuntu1 libstdc++-13-dev_13.2.0-9ubuntu1 libstdc++6_13.2.0-9ubuntu1 linux-libc-dev_6.6.0-14.14 Package versions: adduser_3.137ubuntu1 advancecomp_2.5-1 apt_2.7.7 apt-utils_2.7.7 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13ubuntu5 base-passwd_3.6.3 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hilive Binary: hilive Architecture: any Version: 2.0a-3build4 Maintainer: Ubuntu Developers Uploaders: Andreas Tille Homepage: https://gitlab.com/rki_bioinformatics/HiLive2 Standards-Version: 4.4.1 Vcs-Browser: https://salsa.debian.org/med-team/hilive Vcs-Git: https://salsa.debian.org/med-team/hilive.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath, markdown Package-List: hilive deb science optional arch=any Checksums-Sha1: 5705773f60eef87916fe3612b26df04ae3959d32 161788 hilive_2.0a.orig.tar.gz cf11eadfd1ebba08013b63a4a934c5be0a19a6f9 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---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-27576554 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-27576554 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-27576554 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -b -rfakeroot dpkg-buildpackage: info: source package hilive dpkg-buildpackage: info: source version 2.0a-3build4 dpkg-buildpackage: info: source distribution noble dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DSEQAN_PATH=/usr/lib/seqan/ cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DSEQAN_PATH=/usr/lib/seqan/ .. -- The CXX compiler identification is GNU 13.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Boost: /usr/lib/x86_64-linux-gnu/cmake/Boost-1.83.0/BoostConfig.cmake (found version "1.83.0") found components: system filesystem program_options iostreams -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3") -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success CMake Warning (dev) at /usr/share/cmake/seqan/seqan-config.cmake:218 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. Call Stack (most recent call first): CMakeLists.txt:102 (find_package) This warning is for project developers. Use -Wno-dev to suppress it. -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /usr/include (found version "2.4.0") -- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build cd obj-x86_64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/HiLiveLibs.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 12%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o [ 12%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o -c /<>/lib/tools_static.cpp /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o -c /<>/lib/tools.cpp [ 18%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o [ 25%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o -c /<>/lib/alnread.cpp /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o -c /<>/lib/alnstream.cpp In file included from /<>/lib/tools_static.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/tools_static.h:10: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/lib/tools.h:11, from /<>/lib/tools.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/tools_static.h:10: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/lib/tools.h:11, from /<>/lib/kindex.h:7, from /<>/lib/alnread.h:6, from /<>/lib/alnread.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/alnread.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/lib/tools.h:11, from /<>/lib/kindex.h:7, from /<>/lib/alnstream.h:7, from /<>/lib/alnstream.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/alnstream.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/alnstream.cpp: In member function ‘uint64_t oAlnStream::lz4write(const char*, uint64_t)’: /<>/lib/alnstream.cpp:23:43: warning: ‘int LZ4_compress(const char*, char*, int)’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 23 | uint32_t compressed_size = LZ4_compress (source, buf.data(), size); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /<>/lib/headers.h:5: /usr/include/lz4.h:765:75: note: declared here 765 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ /<>/lib/alnstream.cpp: In member function ‘ReadAlignment* iAlnStream::get_alignment()’: /<>/lib/alnstream.cpp:359:12: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 359 | fread(buffer.data(),1,buf_size,fstream); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lib/alnstream.cpp:389:14: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 389 | fread(buffer.data(),1,buf_size,fstream); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 31%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnout.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/alnout.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/alnout.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/alnout.cpp.o -c /<>/lib/alnout.cpp [ 37%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o -c /<>/lib/illumina_parsers.cpp [ 43%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o -c /<>/lib/kindex.cpp In file included from /<>/lib/tools.h:11, from /<>/lib/kindex.h:7, from /<>/lib/alnout.h:7, from /<>/lib/alnout.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/alnout.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/lib/tools.h:11, from /<>/lib/illumina_parsers.h:6, from /<>/lib/illumina_parsers.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/illumina_parsers.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/lib/tools.h:11, from /<>/lib/kindex.h:7, from /<>/lib/kindex.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/kindex.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 50%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o -c /<>/lib/parallel.cpp In file included from /<>/lib/tools.h:11, from /<>/lib/parallel.h:6, from /<>/lib/parallel.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/lib/headers.h:1, from /<>/lib/parallel.h:4: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 56%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o -MF CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o.d -o CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o -c /<>/lib/argument_parser.cpp In file included from /<>/lib/tools.h:11, from /<>/lib/parallel.h:6, from /<>/lib/argument_parser.h:5, from /<>/lib/argument_parser.cpp:1: /<>/lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/boost/program_options/errors.hpp:12, from /usr/include/boost/program_options/options_description.hpp:12, from /usr/include/boost/program_options.hpp:15, from /<>/lib/argument_parser.h:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 62%] Linking CXX static library libHiLiveLibs.a /usr/bin/cmake -P CMakeFiles/HiLiveLibs.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/HiLiveLibs.dir/link.txt --verbose=1 /usr/bin/ar qc libHiLiveLibs.a CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o CMakeFiles/HiLiveLibs.dir/lib/alnout.cpp.o CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o /usr/bin/ranlib libHiLiveLibs.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 62%] Built target HiLiveLibs make -f CMakeFiles/hilive.dir/build.make CMakeFiles/hilive.dir/depend make -f CMakeFiles/hilive-build.dir/build.make CMakeFiles/hilive-build.dir/depend make -f CMakeFiles/hilive-out.dir/build.make CMakeFiles/hilive-out.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/hilive.dir/DependInfo.cmake "--color=" cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/hilive-build.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/hilive-out.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive.dir/build.make CMakeFiles/hilive.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive-build.dir/build.make CMakeFiles/hilive-build.dir/build make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive-out.dir/build.make CMakeFiles/hilive-out.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object CMakeFiles/hilive.dir/tools/hilive.cpp.o [ 75%] Building CXX object CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o -MF CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o.d -o CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o -c /<>/tools/hilive_out.cpp /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/hilive.dir/tools/hilive.cpp.o -MF CMakeFiles/hilive.dir/tools/hilive.cpp.o.d -o CMakeFiles/hilive.dir/tools/hilive.cpp.o -c /<>/tools/hilive.cpp [ 81%] Building CXX object CMakeFiles/hilive-build.dir/tools/build_index.cpp.o /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_PROGRAM_OPTIONS_DYN_LINK -DBOOST_PROGRAM_OPTIONS_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DHiLive_VERSION_MAJOR=2 -DHiLive_VERSION_MINOR=0 -I/<>/obj-x86_64-linux-gnu -I/<>/lib -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -std=c++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -MD -MT CMakeFiles/hilive-build.dir/tools/build_index.cpp.o -MF CMakeFiles/hilive-build.dir/tools/build_index.cpp.o.d -o CMakeFiles/hilive-build.dir/tools/build_index.cpp.o -c /<>/tools/build_index.cpp In file included from /<>/tools/../lib/tools.h:11, from /<>/tools/../lib/kindex.h:7, from /<>/tools/hilive_out.cpp:5: /<>/tools/../lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/tools/../lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/boost/program_options/errors.hpp:12, from /usr/include/boost/program_options/options_description.hpp:12, from /usr/include/boost/program_options.hpp:15, from /<>/tools/hilive_out.cpp:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/tools/../lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/tools/../lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/tools/../lib/tools.h:11, from /<>/tools/../lib/kindex.h:7, from /<>/tools/hilive.cpp:4: /<>/tools/../lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/tools/../lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /<>/tools/../lib/headers.h:1, from /<>/tools/hilive.cpp:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/tools/../lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/tools/../lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ In file included from /<>/tools/../lib/tools.h:11, from /<>/tools/../lib/kindex.h:7, from /<>/tools/build_index.cpp:5: /<>/tools/../lib/tools_static.h: In function ‘void ltrim(std::string&)’: /<>/tools/../lib/tools_static.h:304:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 304 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/boost/program_options/errors.hpp:12, from /usr/include/boost/program_options/options_description.hpp:12, from /usr/include/boost/program_options.hpp:15, from /<>/tools/build_index.cpp:1: /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ /<>/tools/../lib/tools_static.h: In function ‘void rtrim(std::string&)’: /<>/tools/../lib/tools_static.h:314:45: warning: ‘std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]’ is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 314 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:1126:5: note: declared here 1126 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ [ 87%] Linking CXX executable hilive-build /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive-build.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive "CMakeFiles/hilive-build.dir/tools/build_index.cpp.o" -o hilive-build libHiLiveLibs.a /usr/lib/x86_64-linux-gnu/libz.so -llz4 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lrt /usr/lib/x86_64-linux-gnu/libz.so -llz4 -lrt /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 [ 93%] Linking CXX executable hilive-out /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive-out.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive "CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o" -o hilive-out libHiLiveLibs.a /usr/lib/x86_64-linux-gnu/libz.so -llz4 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lrt /usr/lib/x86_64-linux-gnu/libz.so -llz4 -lrt /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++.isra’ at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘operator++.isra’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7.h:345:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘process.isra’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from ‘assign’ at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from ‘operator<<’ at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from ‘process.isra’ at /usr/include/seqan/index/index_skew7_multi.h:328:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘process.isra’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ [100%] Linking CXX executable hilive /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fno-omit-frame-pointer -mno-omit-leaf-frame-pointer -ffile-prefix-map=/<>=. -flto=auto -ffat-lto-objects -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -fdebug-prefix-map=/<>=/usr/src/hilive-2.0a-3build4 -Wdate-time -D_FORTIFY_SOURCE=3 -pthread -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive CMakeFiles/hilive.dir/tools/hilive.cpp.o -o hilive libHiLiveLibs.a /usr/lib/x86_64-linux-gnu/libz.so -llz4 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_program_options.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 -lrt /usr/lib/x86_64-linux-gnu/libz.so -llz4 -lrt /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++.isra’ at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘operator++.isra’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target hilive-build In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:424:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:433:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++.isra’ at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘operator++.isra’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target hilive-out In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:280:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘insertStream’ at /usr/include/seqan/index/pipe_merger7.h:290:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In member function ‘insertStream’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function ‘allocate’, inlined from ‘_allocateStorage’ at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1532:28, inlined from ‘_reallocateStorage’ at /usr/include/seqan/sequence/string_base.h:1577:30, inlined from ‘_reserveStorage’ at /usr/include/seqan/sequence/string_base.h:1679:83, inlined from ‘reserve’ at /usr/include/seqan/sequence/string_base.h:1697:20, inlined from ‘resize_’ at /usr/include/seqan/sequence/string_base.h:1725:45, inlined from ‘resize’ at /usr/include/seqan/sequence/string_base.h:1785:50, inlined from ‘pop’ at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_sorter.h:260:31, inlined from ‘pop’ at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from ‘operator++’ at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from ‘operator++’ at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from ‘append’ at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value ‘18446744073709551536’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/13/new: In function ‘append’: /usr/include/c++/13/new:126:26: note: in a call to allocation function ‘operator new’ declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target hilive make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install --destdir=debian/hilive/ debian/rules override_dh_install make[1]: Entering directory '/<>' chrpath --delete obj-x86_64-linux-gnu/hilive* dh_install make[1]: Leaving directory '/<>' debian/rules override_dh_installdocs make[1]: Entering directory '/<>' markdown README.md > README.html dh_installdocs rm README.html make[1]: Leaving directory '/<>' dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz dh_strip debugedit: debian/hilive/usr/bin/hilive-build: Unknown DWARF DW_FORM_0x1f21 ee14c60f55e127d43cada2743d5e6326ad79259b debugedit: debian/hilive/usr/bin/hilive: Unknown DWARF DW_FORM_0x1f20 8da46d14b092641d74aaa0875860561c8a2aff7f dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb INFO: pkgstriptranslations version 154 INFO: pkgstriptranslations version 154 pkgstriptranslations: processing hilive (in debian/hilive); do_strip: , oemstrip: pkgstriptranslations: processing hilive-dbgsym (in debian/.debhelper/hilive/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/hilive/DEBIAN/control, package hilive, directory debian/hilive pkgstripfiles: Running PNG optimization (using 4 cpus) for package hilive ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hilive' in '../hilive_2.0a-3build4_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/hilive/dbgsym-root/DEBIAN/control, package hilive-dbgsym, directory debian/.debhelper/hilive/dbgsym-root dpkg-deb: building package 'hilive-dbgsym' in 'debian/.debhelper/scratch-space/build-hilive/hilive-dbgsym_2.0a-3build4_amd64.deb'. Renaming hilive-dbgsym_2.0a-3build4_amd64.deb to hilive-dbgsym_2.0a-3build4_amd64.ddeb dpkg-genbuildinfo --build=binary -O../hilive_2.0a-3build4_amd64.buildinfo dpkg-genchanges --build=binary -mLaunchpad Build Daemon -O../hilive_2.0a-3build4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-12-19T15:16:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hilive_2.0a-3build4_amd64.changes: ---------------------------------- Format: 1.8 Date: Tue, 19 Dec 2023 15:50:29 +0100 Source: hilive Binary: hilive Built-For-Profiles: noudeb Architecture: amd64 Version: 2.0a-3build4 Distribution: noble-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: hilive - realtime alignment of Illumina reads Changes: hilive (2.0a-3build4) noble; urgency=medium . * No-change rebuild for boost defaults change. 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/<>/hilive_2.0a-3build4_amd64.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hilive Binary: hilive hilive-dbgsym Architecture: amd64 Version: 2.0a-3build4 Checksums-Md5: 10626eefbfbde25c3d193400900a2954 6080462 hilive-dbgsym_2.0a-3build4_amd64.ddeb d15b38440481ec96445ca98675e516d1 558196 hilive_2.0a-3build4_amd64.deb Checksums-Sha1: 1ec79534e115c25755110c2ec1278af3ab70b4ef 6080462 hilive-dbgsym_2.0a-3build4_amd64.ddeb 46408a8a6c0f1e428b5719c4228a5bcbe558bc16 558196 hilive_2.0a-3build4_amd64.deb Checksums-Sha256: a3329e81d596f5770de32a2e294e7937626eb1dce5bd93ec91cd4c02f6bd7981 6080462 hilive-dbgsym_2.0a-3build4_amd64.ddeb a8c3801257ebcc782634278f35d2bd076ec434598ba5830f00c0657b6126f8ff 558196 hilive_2.0a-3build4_amd64.deb Build-Origin: Ubuntu Build-Architecture: amd64 Build-Date: Tue, 19 Dec 2023 15:16:45 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13ubuntu5), base-passwd (= 3.6.3), bash (= 5.2.21-2ubuntu1), binutils (= 2.41.50.20231214-1ubuntu1), binutils-common (= 2.41.50.20231214-1ubuntu1), binutils-x86-64-linux-gnu (= 2.41.50.20231214-1ubuntu1), bsdextrautils (= 2.39.2-6ubuntu1), bsdutils (= 1:2.39.2-6ubuntu1), build-essential (= 12.10ubuntu1), bzip2 (= 1.0.8-5build1), chrpath (= 0.16-2), cmake (= 3.28.0-1), cmake-data (= 3.28.0-1), coreutils (= 9.4-2ubuntu1), cpp (= 4:13.2.0-2ubuntu1), cpp-13 (= 13.2.0-9ubuntu1), dash (= 0.5.12-6ubuntu1), debconf (= 1.5.82), debhelper (= 13.11.8ubuntu1), debianutils (= 5.14), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.1ubuntu5), dpkg-dev (= 1.22.1ubuntu5), dwz (= 0.15-1), file (= 1:5.45-2), findutils (= 4.9.0-5), g++ (= 4:13.2.0-2ubuntu1), g++-13 (= 13.2.0-9ubuntu1), gcc (= 4:13.2.0-2ubuntu1), gcc-13 (= 13.2.0-9ubuntu1), gcc-13-base (= 13.2.0-9ubuntu1), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-3), groff-base (= 1.23.0-3), gzip (= 1.12-1ubuntu1), hostname (= 3.23+nmu1ubuntu1), icu-devtools (= 74.2-1ubuntu1), init-system-helpers (= 1.66ubuntu1), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.7.2-1ubuntu2), libasan8 (= 13.2.0-9ubuntu1), libatomic1 (= 13.2.0-9ubuntu1), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231214-1ubuntu1), libblkid1 (= 2.39.2-6ubuntu1), libboost-atomic1.83-dev (= 1.83.0-1ubuntu3), libboost-atomic1.83.0 (= 1.83.0-1ubuntu3), libboost-filesystem-dev (= 1.83.0.1ubuntu2), libboost-filesystem1.83-dev (= 1.83.0-1ubuntu3), libboost-filesystem1.83.0 (= 1.83.0-1ubuntu3), libboost-iostreams-dev (= 1.83.0.1ubuntu2), libboost-iostreams1.83-dev (= 1.83.0-1ubuntu3), libboost-iostreams1.83.0 (= 1.83.0-1ubuntu3), libboost-program-options-dev (= 1.83.0.1ubuntu2), libboost-program-options1.83-dev (= 1.83.0-1ubuntu3), libboost-program-options1.83.0 (= 1.83.0-1ubuntu3), libboost-regex1.83-dev (= 1.83.0-1ubuntu3), libboost-regex1.83.0 (= 1.83.0-1ubuntu3), libboost-system-dev (= 1.83.0.1ubuntu2), libboost-system1.83-dev (= 1.83.0-1ubuntu3), libboost-system1.83.0 (= 1.83.0-1ubuntu3), libboost1.83-dev (= 1.83.0-1ubuntu3), libbrotli1 (= 1.1.0-2), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.38-3ubuntu1), libc-dev-bin (= 2.38-3ubuntu1), libc6 (= 2.38-3ubuntu1), libc6-dev (= 2.38-3ubuntu1), libcap-ng0 (= 0.8.3-3), libcap2 (= 1:2.66-4ubuntu1), libcc1-0 (= 13.2.0-9ubuntu1), libcom-err2 (= 1.47.0-2ubuntu1), libcrypt-dev (= 1:4.4.36-2), libcrypt1 (= 1:4.4.36-2), libctf-nobfd0 (= 2.41.50.20231214-1ubuntu1), libctf0 (= 2.41.50.20231214-1ubuntu1), libcurl3-gnutls (= 8.4.0-2ubuntu1), libcurl4 (= 8.4.0-2ubuntu1), libcurl4-gnutls-dev (= 8.4.0-2ubuntu1), libdb5.3 (= 5.3.28+dfsg2-4), libdebconfclient0 (= 0.271ubuntu1), libdebhelper-perl (= 13.11.8ubuntu1), libdeflate-dev (= 1.18-1), libdeflate0 (= 1.18-1), libdpkg-perl (= 1.22.1ubuntu5), libdw1 (= 0.190-1), libelf1 (= 0.190-1), libexpat1 (= 2.5.0-2), libffi8 (= 3.4.4-2), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-9ubuntu1), libgcc-s1 (= 13.2.0-9ubuntu1), libgcrypt20 (= 1.10.2-3ubuntu1), libgdbm-compat4 (= 1.23-5), libgdbm6 (= 1.23-5), libgmp10 (= 2:6.3.0+dfsg-2ubuntu4), libgnutls30 (= 3.8.1-4ubuntu6), libgomp1 (= 13.2.0-9ubuntu1), libgpg-error0 (= 1.47-3build1), libgprofng0 (= 2.41.50.20231214-1ubuntu1), libgssapi-krb5-2 (= 1.20.1-5build1), libhogweed6 (= 3.9.1-2), libhts-dev (= 1.18+ds-1), libhts3 (= 1.18+ds-1), libhtscodecs2 (= 1.6.0-1), libhwasan0 (= 13.2.0-9ubuntu1), libicu-dev (= 74.2-1ubuntu1), libicu74 (= 74.2-1ubuntu1), libidn2-0 (= 2.3.4-1build1), libisl23 (= 0.26-3), libitm1 (= 13.2.0-9ubuntu1), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-6), libk5crypto3 (= 1.20.1-5build1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-5build1), libkrb5support0 (= 1.20.1-5build1), libldap2 (= 2.6.6+dfsg-1~exp1ubuntu1), liblsan0 (= 13.2.0-9ubuntu1), liblz4-1 (= 1.9.4-1), liblz4-dev (= 1.9.4-1), liblzma-dev (= 5.4.5-0.1), liblzma5 (= 5.4.5-0.1), libmagic-mgc (= 1:5.45-2), libmagic1 (= 1:5.45-2), libmd0 (= 1.1.0-1), libmount1 (= 2.39.2-6ubuntu1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.1-1), libncursesw6 (= 6.4+20231209-1), libnettle8 (= 3.9.1-2), libnghttp2-14 (= 1.58.0-1), libnsl-dev (= 1.3.0-3), libnsl2 (= 1.3.0-3), libp11-kit0 (= 0.25.3-2ubuntu2), libpam-modules (= 1.5.2-9.1ubuntu1), libpam-modules-bin (= 1.5.2-9.1ubuntu1), libpam-runtime (= 1.5.2-9.1ubuntu1), libpam0g (= 1.5.2-9.1ubuntu1), libpcre2-8-0 (= 10.42-4ubuntu1), libperl5.36 (= 5.36.0-10ubuntu1), libpipeline1 (= 1.5.7-1), libproc2-0 (= 2:4.0.4-2ubuntu1), libpsl5 (= 0.21.2-1build1), libquadmath0 (= 13.2.0-9ubuntu1), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2build4), libsasl2-2 (= 2.1.28+dfsg1-4), libsasl2-modules-db (= 2.1.28+dfsg1-4), libseccomp2 (= 2.5.4-2ubuntu1), libselinux1 (= 3.5-1build2), libseqan2-dev (= 2.4.0+dfsg-15ubuntu1), libsframe1 (= 2.41.50.20231214-1ubuntu1), libsmartcols1 (= 2.39.2-6ubuntu1), libssh-4 (= 0.10.5-3ubuntu1), libssl3 (= 3.0.10-1ubuntu3), libstdc++-13-dev (= 13.2.0-9ubuntu1), libstdc++6 (= 13.2.0-9ubuntu1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255-1ubuntu1), libtasn1-6 (= 4.19.0-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan2 (= 13.2.0-9ubuntu1), libubsan1 (= 13.2.0-9ubuntu1), libuchardet0 (= 0.0.8-1), libudev1 (= 255-1ubuntu1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.2-6ubuntu1), libuv1 (= 1.46.0-2ubuntu1), libxml2 (= 2.9.14+dfsg-1.3build3), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.0-14.14), login (= 1:4.13+dfsg1-3ubuntu1), lto-disabled-list (= 44), m4 (= 1.4.19-4), make (= 4.3-4.1build1), man-db (= 2.12.0-1), markdown (= 1.0.1-12), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7build2), perl (= 5.36.0-10ubuntu1), perl-base (= 5.36.0-10ubuntu1), perl-modules-5.36 (= 5.36.0-10ubuntu1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-2ubuntu1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.9-1), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-3ubuntu1), tar (= 1.34+dfsg-1.2ubuntu2), util-linux (= 2.39.2-6ubuntu1), xz-utils (= 5.4.5-0.1), zlib1g (= 1:1.3.dfsg-3ubuntu1), zlib1g-dev (= 1:1.3.dfsg-3ubuntu1) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1702997429" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hilive_2.0a-3build4_amd64.deb ----------------------------- new Debian package, version 2.0. size 558196 bytes: control archive=1048 bytes. 824 bytes, 15 lines control 891 bytes, 13 lines md5sums Package: hilive Version: 2.0a-3build4 Architecture: amd64 Maintainer: Ubuntu Developers Installed-Size: 1743 Depends: libboost-filesystem1.83.0 (>= 1.83.0), libboost-program-options1.83.0 (>= 1.83.0), libc6 (>= 2.38), libgcc-s1 (>= 3.4), liblz4-1 (>= 0.0~r113), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.3.3) Section: science Priority: optional Homepage: https://gitlab.com/rki_bioinformatics/HiLive2 Description: realtime alignment of Illumina reads HiLive is a read mapping tool that maps Illumina HiSeq (or comparable) reads to a reference genome right in the moment when they are produced. This means, read mapping is finished as soon as the sequencer is finished generating the data. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2023-12-19 14:50 ./ drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/ drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/bin/ -rwxr-xr-x root/root 1129016 2023-12-19 14:50 ./usr/bin/hilive -rwxr-xr-x root/root 596472 2023-12-19 14:50 ./usr/bin/hilive-build drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/ drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/doc/ drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/doc/hilive/ -rw-r--r-- root/root 4376 2023-12-19 14:50 ./usr/share/doc/hilive/README.html -rw-r--r-- root/root 278 2020-01-16 10:56 ./usr/share/doc/hilive/README.test -rw-r--r-- root/root 823 2023-12-19 14:50 ./usr/share/doc/hilive/changelog.Debian.gz -rw-r--r-- root/root 1898 2020-01-16 10:56 ./usr/share/doc/hilive/copyright -rw-r--r-- root/root 590 2020-01-16 10:56 ./usr/share/doc/hilive/run-unit-test drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/doc/hilive/tutorial/ -rw-r--r-- root/root 20068 2023-12-19 14:50 ./usr/share/doc/hilive/tutorial/BaseCalls.tar.gz -rw-r--r-- root/root 6290 2019-09-13 08:25 ./usr/share/doc/hilive/tutorial/README.md.gz -rw-r--r-- root/root 201 2019-09-13 08:25 ./usr/share/doc/hilive/tutorial/config.ini -rw-r--r-- root/root 3085 2019-09-13 08:25 ./usr/share/doc/hilive/tutorial/hiv1.fa.gz drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/man/ drwxr-xr-x root/root 0 2023-12-19 14:50 ./usr/share/man/man1/ -rw-r--r-- root/root 648 2023-12-19 14:50 ./usr/share/man/man1/hilive-build.1.gz -rw-r--r-- root/root 3881 2023-12-19 14:50 ./usr/share/man/man1/hilive.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Type: binary Build-Space: 289800 Build-Time: 103 Distribution: noble-proposed Host Architecture: amd64 Install-Time: 11 Job: hilive_2.0a-3build4.dsc Machine Architecture: amd64 Package: hilive Package-Time: 115 Source-Version: 2.0a-3build4 Space: 289800 Status: successful Version: 2.0a-3build4 -------------------------------------------------------------------------------- Finished at 2023-12-19T15:16:45Z Build needed 00:01:55, 289800k disk space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=noble --arch=amd64 PACKAGEBUILD-27576554 Scanning for processes to kill in build PACKAGEBUILD-27576554