RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lcy01-amd64-005 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_157 python-lpbuildd_157 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.3 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 4 Feb 23:20:38 ntpdate[1799]: adjust time server 10.211.37.1 offset 0.045712 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 /home/buildd/filecache-default/f027e517e95d0e91684230ee23be60d709f816c0 Creating target for build PACKAGEBUILD-14308683 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 Starting target for build PACKAGEBUILD-14308683 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14308683 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 Updating target for build PACKAGEBUILD-14308683 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 Packages [1005 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [515 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe amd64 Packages [8413 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4946 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 Packages [163 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [66.8 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 Packages [644 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [206 kB] Fetched 16.6 MB in 3s (4663 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libustr-1.0-1 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcryptsetup12 libgdbm5 libjson-c3 libmpfr6 libnghttp2-14 The following packages will be upgraded: adduser apt apt-transport-https base-files base-passwd binutils binutils-common binutils-x86-64-linux-gnu bsdutils build-essential coreutils cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++-7 gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblsan0 libmount1 libmpc3 libmpx2 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libquadmath0 libreadline7 libroken18-heimdal libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd perl perl-base perl-modules-5.26 pinentry-curses procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata util-linux 140 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 68.7 MB of archives. After this operation, 8116 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-modules-5.26 all 5.26.1-4build1 [2760 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgdbm5 amd64 1.14.1-2ubuntu1 [26.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libperl5.26 amd64 5.26.1-4build1 [3530 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl amd64 5.26.1-4build1 [201 kB] Get:5 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 perl-base amd64 5.26.1-4build1 [1389 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libc6-dev amd64 2.26-0ubuntu4 [2531 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libc-dev-bin amd64 2.26-0ubuntu4 [69.8 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 linux-libc-dev amd64 4.13.0-32.35 [950 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libitm1 amd64 7.3.0-1ubuntu1 [27.5 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7-base amd64 7.3.0-1ubuntu1 [19.3 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc1 amd64 1:7.3.0-1ubuntu1 [39.3 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpx2 amd64 7.3.0-1ubuntu1 [11.8 kB] Get:13 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgomp1 amd64 7.3.0-1ubuntu1 [76.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libatomic1 amd64 7.3.0-1ubuntu1 [8976 B] Get:15 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libasan4 amd64 7.3.0-1ubuntu1 [358 kB] Get:16 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 liblsan0 amd64 7.3.0-1ubuntu1 [134 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libtsan0 amd64 7.3.0-1ubuntu1 [281 kB] Get:18 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libubsan0 amd64 7.3.0-1ubuntu1 [126 kB] Get:19 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcilkrts5 amd64 7.3.0-1ubuntu1 [42.4 kB] Get:20 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libquadmath0 amd64 7.3.0-1ubuntu1 [133 kB] Get:21 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpc3 amd64 1.1.0-1 [40.8 kB] Get:22 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libmpfr6 amd64 4.0.0-7 [243 kB] Get:23 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 cpp-7 amd64 7.3.0-1ubuntu1 [6735 kB] Get:24 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcc1-0 amd64 7.3.0-1ubuntu1 [38.7 kB] Get:25 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-x86-64-linux-gnu amd64 2.30-1ubuntu1 [1854 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libbinutils amd64 2.30-1ubuntu1 [501 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils amd64 2.30-1ubuntu1 [3388 B] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 binutils-common amd64 2.30-1ubuntu1 [193 kB] Get:29 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 g++-7 amd64 7.3.0-1ubuntu1 [7565 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gcc-7 amd64 7.3.0-1ubuntu1 [7435 kB] Get:31 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgcc-7-dev amd64 7.3.0-1ubuntu1 [2380 kB] Get:32 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++-7-dev amd64 7.3.0-1ubuntu1 [1459 kB] Get:33 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libstdc++6 amd64 7.3.0-1ubuntu1 [396 kB] Get:34 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgmp10 amd64 2:6.1.2+dfsg-2 [240 kB] Get:35 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libc6 amd64 2.26-0ubuntu4 [2784 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main amd64 init-system-helpers all 1.51 [37.3 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main amd64 base-files amd64 10ubuntu1 [55.9 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdutils amd64 1:2.30.2-0.1ubuntu1 [60.1 kB] Get:39 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 coreutils amd64 8.28-1ubuntu1 [1231 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main amd64 debianutils amd64 4.8.4 [85.7 kB] Get:41 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg amd64 1.19.0.5ubuntu1 [1140 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 dash amd64 0.5.8-2.9ubuntu1 [107 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fslibs amd64 1.43.8-2 [157 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main amd64 e2fsprogs amd64 1.43.8-2 [501 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main amd64 findutils amd64 4.6.0+git+20170828-2 [291 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 hostname amd64 3.20 [11.3 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 login amd64 1:4.5-1ubuntu1 [307 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 libncurses5 amd64 6.0+20171125-1ubuntu1 [95.0 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libtinfo5 amd64 6.0+20171125-1ubuntu1 [80.2 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libncursesw5 amd64 6.0+20171125-1ubuntu1 [117 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-bin amd64 6.0+20171125-1ubuntu1 [162 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 sed amd64 4.4-2 [182 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 libuuid1 amd64 2.30.2-0.1ubuntu1 [14.8 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 libblkid1 amd64 2.30.2-0.1ubuntu1 [119 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 libsmartcols1 amd64 2.30.2-0.1ubuntu1 [78.8 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main amd64 libfdisk1 amd64 2.30.2-0.1ubuntu1 [157 kB] Get:57 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpcre3 amd64 2:8.39-9 [229 kB] Get:58 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libselinux1 amd64 2.7-2build1 [68.3 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main amd64 libmount1 amd64 2.30.2-0.1ubuntu1 [131 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 fdisk amd64 2.30.2-0.1ubuntu1 [105 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 util-linux amd64 2.30.2-0.1ubuntu1 [879 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 base-passwd amd64 3.5.44 [47.2 kB] Get:63 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libc-bin amd64 2.26-0ubuntu4 [615 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main amd64 ncurses-base all 6.0+20171125-1ubuntu1 [17.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 sysvinit-utils amd64 2.88dsf-59.10ubuntu1 [18.6 kB] Get:66 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libudev1 amd64 237-1ubuntu2 [54.6 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main amd64 libapt-pkg5.0 amd64 1.6~alpha7ubuntu1 [798 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage-common all 2.7-2build1 [6944 B] Get:69 http://ftpmaster.internal/ubuntu bionic/main amd64 libsemanage1 amd64 2.7-2build1 [84.4 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main amd64 passwd amd64 1:4.5-1ubuntu1 [816 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main amd64 debconf all 1.5.65 [124 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main amd64 adduser all 3.116ubuntu1 [163 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main amd64 libgpg-error0 amd64 1.27-5 [36.9 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main amd64 libgcrypt20 amd64 1.8.1-4 [417 kB] Get:75 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpgv amd64 2.2.4-1ubuntu1 [196 kB] Get:76 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libnettle6 amd64 3.4-1 [109 kB] Get:77 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libhogweed4 amd64 3.4-1 [137 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn2-0 amd64 2.0.4-1 [93.2 kB] Get:79 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libffi6 amd64 3.2.1-8 [17.9 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main amd64 libp11-kit0 amd64 0.23.9-2 [187 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main amd64 libtasn1-6 amd64 4.13-2 [36.2 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main amd64 libgnutls30 amd64 3.5.17-1ubuntu1 [685 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 libseccomp2 amd64 2.3.1-2.1ubuntu3 [37.3 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main amd64 apt amd64 1.6~alpha7ubuntu1 [1153 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 libargon2-0 amd64 0~20161029-1.1 [19.9 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main amd64 libjson-c3 amd64 0.12.1-1.3 [21.4 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 libdevmapper1.02.1 amd64 2:1.02.145-4.1ubuntu2 [127 kB] Get:88 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcryptsetup12 amd64 2:2.0.1-0ubuntu1 [134 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main amd64 libapparmor1 amd64 2.11.0-2ubuntu19 [28.8 kB] Get:90 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap2 amd64 1:2.25-1.2 [13.0 kB] Get:91 http://ftpmaster.internal/ubuntu bionic/main amd64 libidn11 amd64 1.33-2.1 [46.0 kB] Get:92 http://ftpmaster.internal/ubuntu bionic/main amd64 libip4tc0 amd64 1.6.1-2ubuntu2 [19.6 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main amd64 libkmod2 amd64 24-1ubuntu3 [40.1 kB] Get:94 http://ftpmaster.internal/ubuntu bionic/main amd64 mount amd64 2.30.2-0.1ubuntu1 [110 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main amd64 libprocps6 amd64 2:3.3.12-3ubuntu1 [31.4 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main amd64 lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main amd64 procps amd64 2:3.3.12-3ubuntu1 [225 kB] Get:98 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd amd64 237-1ubuntu2 [2898 kB] Get:99 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libsystemd0 amd64 237-1ubuntu2 [206 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main amd64 init amd64 1.51 [5864 B] Get:101 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 systemd-sysv amd64 237-1ubuntu2 [12.6 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main amd64 libcap-ng0 amd64 0.7.7-3.1 [11.1 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main amd64 libcomerr2 amd64 1.43.8-2 [11.2 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/main amd64 libss2 amd64 1.43.8-2 [11.1 kB] Get:105 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 multiarch-support amd64 2.26-0ubuntu4 [6912 B] Get:106 http://ftpmaster.internal/ubuntu bionic/main amd64 sensible-utils all 0.0.11 [14.8 kB] Get:107 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main amd64 libassuan0 amd64 2.5.1-1 [35.0 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main amd64 readline-common all 7.0-3 [52.9 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main amd64 libreadline7 amd64 7.0-3 [124 kB] Get:111 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gnupg amd64 2.2.4-1ubuntu1 [249 kB] Get:112 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:113 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpgconf amd64 2.2.4-1ubuntu1 [122 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 pinentry-curses amd64 1.0.0-3 [34.7 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main amd64 libnpth0 amd64 1.5-3 [7668 B] Get:116 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpg-agent amd64 2.2.4-1ubuntu1 [227 kB] Get:117 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gnupg-utils amd64 2.2.4-1ubuntu1 [126 kB] Get:118 http://ftpmaster.internal/ubuntu bionic/main amd64 libsqlite3-0 amd64 3.22.0-1 [496 kB] Get:119 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpg amd64 2.2.4-1ubuntu1 [467 kB] Get:120 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpg-wks-client amd64 2.2.4-1ubuntu1 [91.7 kB] Get:121 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpg-wks-server amd64 2.2.4-1ubuntu1 [84.9 kB] Get:122 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 gpgsm amd64 2.2.4-1ubuntu1 [215 kB] Get:123 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dirmngr amd64 2.2.4-1ubuntu1 [316 kB] Get:124 http://ftpmaster.internal/ubuntu bionic/main amd64 dmsetup amd64 2:1.02.145-4.1ubuntu2 [74.3 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main amd64 libroken18-heimdal amd64 7.5.0+dfsg-1 [41.3 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main amd64 libasn1-8-heimdal amd64 7.5.0+dfsg-1 [175 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimbase1-heimdal amd64 7.5.0+dfsg-1 [29.3 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main amd64 libhcrypto4-heimdal amd64 7.5.0+dfsg-1 [85.9 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main amd64 libwind0-heimdal amd64 7.5.0+dfsg-1 [47.8 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main amd64 libhx509-5-heimdal amd64 7.5.0+dfsg-1 [107 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-26-heimdal amd64 7.5.0+dfsg-1 [206 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main amd64 libheimntlm0-heimdal amd64 7.5.0+dfsg-1 [14.8 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi3-heimdal amd64 7.5.0+dfsg-1 [96.5 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main amd64 libslang2 amd64 2.3.1a-1ubuntu1 [422 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main amd64 libssl1.0.0 amd64 1.0.2n-1ubuntu1 [1086 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main amd64 openssl amd64 1.0.2n-1ubuntu1 [499 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main amd64 tzdata all 2018c-1 [188 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main amd64 libgssapi-krb5-2 amd64 1.16-2 [122 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5-3 amd64 1.16-2 [279 kB] Get:140 http://ftpmaster.internal/ubuntu bionic/main amd64 libk5crypto3 amd64 1.16-2 [85.2 kB] Get:141 http://ftpmaster.internal/ubuntu bionic/main amd64 libkrb5support0 amd64 1.16-2 [31.2 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main amd64 libkeyutils1 amd64 1.5.9-9.2ubuntu1 [9308 B] Get:143 http://ftpmaster.internal/ubuntu bionic/main amd64 libpng16-16 amd64 1.6.34-1 [176 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/universe amd64 apt-transport-https all 1.6~alpha7ubuntu1 [1692 B] Get:145 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 dpkg-dev all 1.19.0.5ubuntu1 [607 kB] Get:146 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libdpkg-perl all 1.19.0.5ubuntu1 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Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:amd64 (1.16-2) ... Setting up binutils (2.30-1ubuntu1) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:amd64 (7.5.0+dfsg-1) ... Setting up gcc-7 (7.3.0-1ubuntu1) ... Setting up g++-7 (7.3.0-1ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.58.0-2ubuntu1) ... Setting up gnupg (2.2.4-1ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.26-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14308683 amd64 bionic-proposed -c chroot:build-PACKAGEBUILD-14308683 --arch=amd64 --dist=bionic-proposed --nolog -A hinge_0.5.0-3.dsc Initiating build PACKAGEBUILD-14308683 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-101-generic #124-Ubuntu SMP Fri Nov 10 18:29:59 UTC 2017 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-amd64-005.buildd +==============================================================================+ | hinge 0.5.0-3 (amd64) 04 Feb 2018 23:21 | +==============================================================================+ Package: hinge Version: 0.5.0-3 Source Version: 0.5.0-3 Distribution: bionic-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/hinge-MhXDqs/hinge-0.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/hinge-MhXDqs' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14308683/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hinge_0.5.0-3.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-rymQ5c/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-rymQ5c/apt_archive ./ InRelease Get:2 copy:/<>/resolver-rymQ5c/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-rymQ5c/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-rymQ5c/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-rymQ5c/apt_archive ./ Packages [524 B] Fetched 2857 B in 0s (111 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libnghttp2-14 libpsl5 librtmp1 libustr-1.0-1 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-rymQ5c/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12933 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 9), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib Filtered Build-Depends: debhelper (>= 9), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib dpkg-deb: building package 'sbuild-build-depends-hinge-dummy' in '/<>/resolver-3NEPyw/apt_archive/sbuild-build-depends-hinge-dummy.deb'. Ign:1 copy:/<>/resolver-3NEPyw/apt_archive ./ InRelease Get:2 copy:/<>/resolver-3NEPyw/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-3NEPyw/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-3NEPyw/apt_archive ./ Sources [321 B] Get:5 copy:/<>/resolver-3NEPyw/apt_archive ./ Packages [644 B] Fetched 3084 B in 0s (95.3 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install hinge build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libustr-1.0-1 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libboost-dev libboost-graph-dev libboost-graph1.65-dev libboost-graph1.65.1 libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts2 libicu-le-hb0 libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp1 liblapack3 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librhash0 libsigsegv2 libspdlog-dev libsz2 libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-h5py python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2.7 python2.7-minimal ttf-bitstream-vera zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation ninja-build dh-make dwz gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc graphviz libboost1.65-doc libboost-atomic1.65-dev libboost-chrono1.65-dev libboost-container1.65-dev libboost-context1.65-dev libboost-coroutine1.65-dev libboost-date-time1.65-dev libboost-exception1.65-dev libboost-fiber1.65-dev libboost-filesystem1.65-dev libboost-graph-parallel1.65-dev libboost-iostreams1.65-dev libboost-locale1.65-dev libboost-log1.65-dev libboost-math1.65-dev libboost-mpi1.65-dev libboost-mpi-python1.65-dev libboost-numpy1.65-dev libboost-program-options1.65-dev libboost-python1.65-dev libboost-random1.65-dev libboost-regex1.65-dev libboost-signals1.65-dev libboost-stacktrace1.65-dev libboost-system1.65-dev libboost-thread1.65-dev libboost-timer1.65-dev libboost-type-erasure1.65-dev libboost-wave1.65-dev libboost1.65-tools-dev libmpfrc++-dev libntl-dev libhdf5-doc libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser apparmor texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf libmail-box-perl python-doc python-tk python-cycler-doc python-h5py-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-nose python-qt4 python-scipy python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils ttf-staypuft python-pygraphviz | python-pydot gfortran python-dev python-numpy-dbg python-numpy-doc python-pbcore-doc python-pexpect-doc python-setuptools python-pyparsing-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python-pil python-tk python-yaml The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libblas3 libboost-dev libboost-graph-dev libboost-graph1.65-dev libboost-graph1.65.1 libboost-regex1.65.1 libboost-serialization1.65-dev libboost-serialization1.65.1 libboost-test1.65-dev libboost-test1.65.1 libboost1.65-dev libbsd0 libcroco3 libcurl3 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libgraphite2-3 libharfbuzz0b libhdf5-100 libhdf5-cpp-100 libhdf5-dev libhts2 libicu-le-hb0 libicu60 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp1 liblapack3 liblua5.1-0 libluajit-5.1-2 libluajit-5.1-common liblzo2-2 libmagic-mgc libmagic1 libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib librhash0 libsigsegv2 libspdlog-dev libsz2 libtimedate-perl libtool libuv1 libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-h5py python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2.7 python2.7-minimal sbuild-build-depends-hinge-dummy ttf-bitstream-vera zlib1g-dev 0 upgraded, 118 newly installed, 1 to remove and 0 not upgraded. Need to get 73.4 MB of archives. After this operation, 394 MB of additional disk space will be used. Get:1 copy:/<>/resolver-3NEPyw/apt_archive ./ sbuild-build-depends-hinge-dummy 0.invalid.0 [968 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main amd64 groff-base amd64 1.22.3-9 [1144 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main amd64 libbsd0 amd64 0.8.7-1 [41.5 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main amd64 bsdmainutils amd64 11.1.2ubuntu1 [181 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main amd64 libpipeline1 amd64 1.5.0-1 [25.3 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 man-db amd64 2.7.6.1-4build1 [898 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main amd64 cmake-data all 3.9.5-1 [1268 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main amd64 libfreetype6 amd64 2.8.1-0.1ubuntu2 [334 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main amd64 libglib2.0-0 amd64 2.54.1-1ubuntu1 [1163 kB] Get:11 http://ftpmaster.internal/ubuntu bionic/main amd64 libgraphite2-3 amd64 1.3.10-8 [77.9 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main amd64 libharfbuzz0b amd64 1.7.2-1 [232 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu-le-hb0 amd64 1.0.3+git161113-4 [14.3 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main amd64 libicu60 amd64 60.2-3ubuntu1 [8066 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main amd64 libxml2 amd64 2.9.4+dfsg1-6.1ubuntu1 [662 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive13 amd64 3.2.2-3.1 [289 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libcurl3 amd64 7.58.0-2ubuntu1 [214 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main amd64 libexpat1 amd64 2.2.5-3 [80.2 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main amd64 libjsoncpp1 amd64 1.7.4-3 [73.6 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main amd64 librhash0 amd64 1.3.4-3 [77.0 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main amd64 libuv1 amd64 1.18.0-3 [64.4 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main amd64 cmake amd64 3.9.5-1 [3106 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-turbo8 amd64 1.5.2-0ubuntu5 [110 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-minimal amd64 2.7.14-4 [337 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main amd64 python2.7-minimal amd64 2.7.14-4 [1293 kB] Get:26 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python-minimal amd64 2.7.14-4 [28.0 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main amd64 mime-support all 3.60ubuntu1 [30.1 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main amd64 libpython2.7-stdlib amd64 2.7.14-4 [1910 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main amd64 python2.7 amd64 2.7.14-4 [233 kB] Get:30 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libpython-stdlib amd64 2.7.14-4 [7540 B] Get:31 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automake all 1:1.15.1-3ubuntu1 [509 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main amd64 autopoint all 0.19.8.1-4ubuntu2 [412 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/universe amd64 daligner amd64 1.0+20180108-1 [176 kB] Get:44 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 dascrubber amd64 0~20180108-1 [151 kB] Get:45 http://ftpmaster.internal/ubuntu bionic-proposed/universe amd64 dazzdb amd64 1.0+20180115-1 [172 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main amd64 libtool all 2.4.6-2 [194 kB] Get:47 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-autoreconf all 16 [15.8 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main amd64 libarchive-zip-perl all 1.60-1 [83.9 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/main amd64 libfile-stripnondeterminism-perl all 0.040-1 [13.9 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main amd64 dh-strip-nondeterminism all 0.040-1 [5196 B] Get:52 http://ftpmaster.internal/ubuntu bionic/main amd64 libcroco3 amd64 0.6.12-2 [81.3 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main amd64 gettext amd64 0.19.8.1-4ubuntu2 [1087 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main amd64 po-debconf all 1.0.20 [232 kB] Get:56 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 debhelper all 11.1.4ubuntu1 [900 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/universe amd64 fonts-lyx all 2.2.3-4 [155 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/universe amd64 hdf5-helpers amd64 1.10.0-patch1+docs-4 [12.3 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/universe amd64 libaec0 amd64 0.3.2-2 [18.1 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main amd64 libblas3 amd64 3.7.1-4ubuntu1 [140 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main amd64 libboost1.65-dev amd64 1.65.1+dfsg-0ubuntu4 [7217 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main amd64 libboost-dev amd64 1.65.1.0ubuntu1 [3128 B] Get:63 http://ftpmaster.internal/ubuntu bionic/main amd64 libboost-regex1.65.1 amd64 1.65.1+dfsg-0ubuntu4 [255 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/universe amd64 libboost-graph1.65.1 amd64 1.65.1+dfsg-0ubuntu4 [93.3 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main amd64 libboost-serialization1.65.1 amd64 1.65.1+dfsg-0ubuntu4 [99.2 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main amd64 libboost-serialization1.65-dev amd64 1.65.1+dfsg-0ubuntu4 [136 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/universe amd64 libboost-test1.65.1 amd64 1.65.1+dfsg-0ubuntu4 [239 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/universe amd64 libboost-test1.65-dev amd64 1.65.1+dfsg-0ubuntu4 [287 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/universe amd64 libboost-graph1.65-dev amd64 1.65.1+dfsg-0ubuntu4 [102 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/universe amd64 libboost-graph-dev amd64 1.65.1.0ubuntu1 [3024 B] Get:71 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libgfortran4 amd64 7.3.0-1ubuntu1 [492 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/universe amd64 libsz2 amd64 0.3.2-2 [5114 B] Get:73 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-100 amd64 1.10.0-patch1+docs-4 [1256 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-cpp-100 amd64 1.10.0-patch1+docs-4 [104 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-0ubuntu2 [176 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-turbo8-dev amd64 1.5.2-0ubuntu5 [225 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:78 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg8-dev amd64 8c-2ubuntu8 [1552 B] Get:79 http://ftpmaster.internal/ubuntu bionic/main amd64 libjpeg-dev amd64 8c-2ubuntu8 [1546 B] Get:80 http://ftpmaster.internal/ubuntu bionic/universe amd64 libaec-dev amd64 0.3.2-2 [16.4 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhdf5-dev amd64 1.10.0-patch1+docs-4 [2461 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/universe amd64 libhts2 amd64 1.6-4 [289 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main amd64 libjs-jquery all 3.2.1-1 [152 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main amd64 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:86 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 libjs-sphinxdoc all 1.6.6-2 [85.1 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main amd64 liblapack3 amd64 3.7.1-4ubuntu1 [2112 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/universe amd64 liblua5.1-0 amd64 5.1.5-8.1build1 [105 kB] Get:89 http://ftpmaster.internal/ubuntu 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[60.6 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-matplotlib-data all 2.1.1-2 [3775 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main amd64 python-pyparsing all 2.1.10+dfsg1-1 [51.7 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main amd64 python-tz all 2017.2-2 [31.7 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main amd64 python-numpy amd64 1:1.13.3-2ubuntu1 [1938 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-cycler all 0.10.0-1 [7520 B] Get:105 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-subprocess32 amd64 3.2.7-2 [26.6 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-matplotlib amd64 2.1.1-2 [3900 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-ptyprocess all 0.5.2-1 [12.6 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-pexpect all 4.2.1-1 [41.7 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-easydev all 0.9.35+dfsg-1 [39.7 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-colormap all 1.0.1-1 [14.7 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main amd64 python-configparser all 3.5.0-1 [59.6 kB] Get:112 http://ftpmaster.internal/ubuntu bionic/main amd64 python-decorator all 4.1.2-1 [9300 B] Get:113 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-h5py amd64 2.7.1-2 [623 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main amd64 python-networkx all 1.11-1ubuntu1 [806 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-pysam amd64 0.13.0+ds-1 [1544 kB] Get:116 http://ftpmaster.internal/ubuntu bionic-proposed/main amd64 python-pkg-resources all 38.4.0-1 [128 kB] Get:117 http://ftpmaster.internal/ubuntu bionic/universe amd64 python-pbcore all 1.2.11+dfsg-1ubuntu1 [9084 kB] Get:118 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Processing triggers for libc-bin (2.26-0ubuntu4) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-101-generic amd64 (x86_64) Toolchain package versions: binutils_2.30-1ubuntu1 dpkg-dev_1.19.0.5ubuntu1 g++-7_7.3.0-1ubuntu1 gcc-7_7.3.0-1ubuntu1 libc6-dev_2.26-0ubuntu4 libstdc++-7-dev_7.3.0-1ubuntu1 libstdc++6_7.3.0-1ubuntu1 linux-libc-dev_4.13.0-32.35 Package versions: adduser_3.116ubuntu1 advancecomp_2.0-1 apt_1.6~alpha7ubuntu1 apt-transport-https_1.6~alpha7ubuntu1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu1 autopoint_0.19.8.1-4ubuntu2 autotools-dev_20171216.1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4-5ubuntu1 binutils_2.30-1ubuntu1 binutils-common_2.30-1ubuntu1 binutils-x86-64-linux-gnu_2.30-1ubuntu1 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.30.2-0.1ubuntu1 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 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python-matplotlib-data_2.1.1-2 python-minimal_2.7.14-4 python-networkx_1.11-1ubuntu1 python-numpy_1:1.13.3-2ubuntu1 python-pbcore_1.2.11+dfsg-1ubuntu1 python-pexpect_4.2.1-1 python-pkg-resources_38.4.0-1 python-ptyprocess_0.5.2-1 python-pyparsing_2.1.10+dfsg1-1 python-pysam_0.13.0+ds-1 python-six_1.11.0-1 python-subprocess32_3.2.7-2 python-tz_2017.2-2 python-ujson_1.35-2 python2.7_2.7.14-4 python2.7-minimal_2.7.14-4 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hinge-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.11 systemd_237-1ubuntu2 systemd-sysv_237-1ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 ttf-bitstream-vera_1.10-8 tzdata_2018c-1 ubuntu-keyring_2016.10.27 util-linux_2.30.2-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Sun Feb 4 19:09:19 2018 UTC gpgv: using RSA key EAB723A266F627E68055615F59B2306F3AF9DDC1 gpgv: issuer "afif@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hinge_0.5.0-3.dsc dpkg-source: info: extracting hinge in hinge-0.5.0 dpkg-source: info: unpacking hinge_0.5.0.orig.tar.gz dpkg-source: info: unpacking hinge_0.5.0-3.debian.tar.xz dpkg-source: info: applying external-spdlog.patch dpkg-source: info: applying libspdlog-14.0.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14308683 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14308683 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14308683 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hinge dpkg-buildpackage: info: source version 0.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build hinge-0.5.0 dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-x86_64-linux-gnu && cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -- The C compiler identification is GNU 7.3.0 -- The CXX compiler identification is GNU 7.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Boost version: 1.65.1 -- Found the following Boost libraries: -- graph -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin /<>/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= Scanning dependencies of target man make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build 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CMakeFiles/DB.dir/link.txt --verbose=1 /usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o /usr/bin/ranlib libDB.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target DB make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= Scanning dependencies of target LAInterface make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 62%] Building CXX object bin/lib/CMakeFiles/LAInterface.dir/LAInterface.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/LAInterface.dir/LAInterface.cpp.o -c /<>/src/lib/LAInterface.cpp /<>/src/lib/LAInterface.cpp: In member function ‘void LAInterface::getOverlapw(std::vector&, int, int)’: /<>/src/lib/LAInterface.cpp:1666:57: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘int64 {aka long long int}’ [-Wformat=] printf("%d percent finished\n", j/(novl/100)); ~~~~~~~~~~~~^ [ 65%] Linking CXX static library libLAInterface.a cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LAInterface.dir/cmake_clean_target.cmake cd /<>/obj-x86_64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LAInterface.dir/link.txt --verbose=1 /usr/bin/ar qc libLAInterface.a CMakeFiles/LAInterface.dir/LAInterface.cpp.o /usr/bin/ranlib libLAInterface.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/filter /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/filter /<>/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= Scanning dependencies of target Reads_filter make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 68%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/filter && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /<>/src/filter/filter.cpp [ 72%] Linking CXX executable Reads_filter cd /<>/obj-x86_64-linux-gnu/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target Reads_filter make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/maximal /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/maximal /<>/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= Scanning dependencies of target get_maximal_reads make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 75%] Building CXX object bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /<>/src/maximal/maximal.cpp [ 79%] Linking CXX executable get_maximal_reads cd /<>/obj-x86_64-linux-gnu/bin/maximal && /usr/bin/cmake -E cmake_link_script CMakeFiles/get_maximal_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -o get_maximal_reads ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target get_maximal_reads make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/consensus /<>/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= Scanning dependencies of target consensus make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 82%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/consensus.dir/consensus.cpp.o -c /<>/src/consensus/consensus.cpp [ 86%] Linking CXX executable consensus cd /<>/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/consensus.dir/consensus.cpp.o -o consensus ../lib/libLAInterface.a ../lib/libfalcon.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target consensus make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/consensus /<>/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= Scanning dependencies of target draft_assembly make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 89%] Building CXX object bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/draft_assembly.dir/draft.cpp.o -c /<>/src/consensus/draft.cpp [ 93%] Linking CXX executable draft_assembly cd /<>/obj-x86_64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/draft_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/draft_assembly.dir/draft.cpp.o -o draft_assembly ../lib/libLAInterface.a ../lib/libini.a ../lib/libfalcon.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target draft_assembly make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/layout /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/layout /<>/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= Scanning dependencies of target hinging make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o cd /<>/obj-x86_64-linux-gnu/bin/layout && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/hinging.dir/hinging.cpp.o -c /<>/src/layout/hinging.cpp [100%] Linking CXX executable hinging cd /<>/obj-x86_64-linux-gnu/bin/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinging.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -rdynamic CMakeFiles/hinging.dir/hinging.cpp.o -o hinging ../lib/libLAInterface.a ../lib/libini.a -Wl,-Bstatic -lboost_graph ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -Wl,-Bdynamic -lz make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target hinging make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_auto_test -O--buildsystem=cmake fakeroot debian/rules binary dh binary --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/debian/hinge AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin /<>/obj-x86_64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 3%] Built target man make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/kmer_lookup.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 10%] Built target kmer_lookup make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DW_banded.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 17%] Built target DW_banded make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/falcon.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 24%] Built target falcon make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/PAF.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 31%] Built target PAF make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/ini.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 41%] Built target ini make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LA.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 48%] Built target LA make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DB.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 58%] Built target DB make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/lib /<>/obj-x86_64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LAInterface.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/filter /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/filter /<>/obj-x86_64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/filter/CMakeFiles/Reads_filter.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 72%] Built target Reads_filter make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/maximal /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/maximal /<>/obj-x86_64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/maximal/CMakeFiles/get_maximal_reads.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 79%] Built target get_maximal_reads make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/consensus /<>/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/consensus.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 86%] Built target consensus make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/consensus /<>/obj-x86_64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/draft_assembly.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target draft_assembly make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/layout /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/bin/layout /<>/obj-x86_64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'bin/layout/CMakeFiles/hinging.dir/build'. make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target hinging make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/hinge/usr/lib/hinge -- Installing: /<>/debian/hinge/usr/lib/hinge/create_hgraph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_consensus_gfa.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_annotation.py -- Installing: /<>/debian/hinge/usr/lib/hinge/clip_ends.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_with_gt.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping2.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pruning_and_clipping.py -- Installing: /<>/debian/hinge/usr/lib/hinge/repeat_annotate_reads.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parallel_draw_large.sh -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly_not_perfect.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_create_gfa_compute_n50.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup_w_repeat.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup_region.py -- Installing: /<>/debian/hinge/usr/lib/hinge/interface_utils.py -- Installing: /<>/debian/hinge/usr/lib/hinge/split_las.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw_pileup_region.py -- Installing: /<>/debian/hinge/usr/lib/hinge/connected.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping3.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_and_annotate.py -- Installing: /<>/debian/hinge/usr/lib/hinge/download_NCTC_pipeline.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw_pileup_region_find_bridges.py -- Installing: /<>/debian/hinge/usr/lib/hinge/correct_head.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_nctc.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_parse_read.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup.py -- Installing: /<>/debian/hinge/usr/lib/hinge/random_condensation.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_single_strand.py -- Installing: /<>/debian/hinge/usr/lib/hinge/create_hgraph_nogt.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_path_norevcomp.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_consensus.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pruning_and_clipping_nanopore.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_read.py -- Installing: /<>/debian/hinge/usr/lib/hinge/add_groundtruth_json.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_path.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_parse_alignment.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_alignment.py -- Installing: /<>/debian/hinge/usr/lib/hinge/create_bandage_file.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_consensus_norevcomp.py -- Installing: /<>/debian/hinge/usr/lib/hinge/longest_path.py -- Installing: /<>/debian/hinge/usr/lib/hinge/unitig.py -- Installing: /<>/debian/hinge/usr/lib/hinge/fasta_to_fastq.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_qv.py -- Installing: /<>/debian/hinge/usr/lib/hinge/merge_hinges.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parallel_draw.sh -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pileup.ipynb -- Installing: /<>/debian/hinge/usr/lib/hinge/Visualise_graph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/compute_n50_from_draft.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2.py -- Installing: /<>/debian/hinge/usr/lib/hinge/add_groundtruth.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_NCTC_json.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_annotate_clip_ends.py -- Installing: /<>/debian/hinge/usr/share/man/man1/hinge.1 -- Installing: /<>/debian/hinge/usr/bin/hinge -- Installing: /<>/debian/hinge/usr/lib/hinge/Reads_filter -- Installing: /<>/debian/hinge/usr/lib/hinge/get_maximal_reads -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly -- Installing: /<>/debian/hinge/usr/lib/hinge/consensus -- Installing: /<>/debian/hinge/usr/lib/hinge/hinging make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples # only install nominal.ini from the utils/ directory, but preserve # the directory structure (since demo scripts expect it) mkdir -p debian/hinge/usr/share/doc/hinge/examples/utils \ && cp utils/nominal.ini debian/hinge/usr/share/doc/hinge/examples/utils make[1]: Leaving directory '/<>' dh_installman -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_strip -O--buildsystem=cmake dh_makeshlibs -O--buildsystem=cmake dh_shlibdeps -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing hinge (in debian/hinge); do_strip: , oemstrip: pkgstriptranslations: processing hinge-dbgsym (in debian/.debhelper/hinge/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hinge/DEBIAN/control, package hinge, directory debian/hinge pkgstripfiles: Running PNG optimization (using 4 cpus) for package hinge ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hinge' in '../hinge_0.5.0-3_amd64.deb'. pkgstripfiles: processing control file: debian/.debhelper/hinge/dbgsym-root/DEBIAN/control, package hinge-dbgsym, directory debian/.debhelper/hinge/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package hinge-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hinge-dbgsym' in 'debian/.debhelper/scratch-space/build-hinge/hinge-dbgsym_0.5.0-3_amd64.deb'. Renaming hinge-dbgsym_0.5.0-3_amd64.deb to hinge-dbgsym_0.5.0-3_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../hinge_0.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build hinge-0.5.0 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180204-2323 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hinge_0.5.0-3_amd64.changes: ---------------------------- Format: 1.8 Date: Sun, 04 Feb 2018 14:07:59 -0500 Source: hinge Binary: hinge Architecture: amd64 Version: 0.5.0-3 Distribution: bionic-proposed Urgency: low Maintainer: Launchpad Build Daemon Changed-By: Afif Elghraoui Description: hinge - long read genome assembler based on hinging Changes: hinge (0.5.0-3) unstable; urgency=low . * Mark spdlog patch as forwarded upstream * d/control: copy Depends into Build-Depends to allow migration to Testing * Bump Standards-Version to 4.1.3 * Bump copyright year Checksums-Sha1: 7ab1d08b6519e3da9010eda3f458e96ac1bc4eb1 5169044 hinge-dbgsym_0.5.0-3_amd64.ddeb 76554784f6b6fcd225b52ec6fe65fd879f8d5096 9158 hinge_0.5.0-3_amd64.buildinfo 185f21e1e51fac86c17334bd5dff032ff8b6bfb4 391204 hinge_0.5.0-3_amd64.deb Checksums-Sha256: 69dfeb5f6544fb9afba631a3939bd3f2612efdb0f4c100d139c27e42a35e7ffb 5169044 hinge-dbgsym_0.5.0-3_amd64.ddeb 46275bc7d3c6134768b9aa728d2adfcd8664a8ed5220cd86ae58b5c334732019 9158 hinge_0.5.0-3_amd64.buildinfo d0df1cb43c3884c615ff8537828b2f090a74c2067a062374aa9eca5c5107fca0 391204 hinge_0.5.0-3_amd64.deb Files: 1e1e40c7cc8f0a86fbcf48e2d6501afb 5169044 debug optional hinge-dbgsym_0.5.0-3_amd64.ddeb fb68864fabd8016c3a38da599b5829ee 9158 science optional hinge_0.5.0-3_amd64.buildinfo 46e41cec47e8dd5a95b676c13984a389 391204 science optional hinge_0.5.0-3_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hinge_0.5.0-3_amd64.deb ----------------------- new debian package, version 2.0. size 391204 bytes: control archive=2972 bytes. 1086 bytes, 17 lines control 5202 bytes, 74 lines md5sums Package: hinge Version: 0.5.0-3 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2450 Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libgomp1 (>= 4.2.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib Section: science Priority: optional Homepage: https://github.com/HingeAssembler/HINGE Description: long read genome assembler based on hinging HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers. drwxr-xr-x root/root 0 2018-02-04 19:07 ./ drwxr-xr-x root/root 0 2018-02-04 19:07 ./usr/ drwxr-xr-x root/root 0 2018-02-04 19:07 ./usr/bin/ -rwxr-xr-x root/root 840 2017-08-13 23:05 ./usr/bin/hinge drwxr-xr-x root/root 0 2018-02-04 19:07 ./usr/lib/ drwxr-xr-x root/root 0 2018-02-04 19:07 ./usr/lib/hinge/ -rwxr-xr-x root/root 465624 2018-02-04 19:07 ./usr/lib/hinge/Reads_filter -rwxr-xr-x root/root 1717 2017-08-13 23:05 ./usr/lib/hinge/Visualise_graph.py -rwxr-xr-x root/root 1808 2017-08-13 23:05 ./usr/lib/hinge/add_groundtruth.py -rw-r--r-- root/root 1493 2017-08-13 23:05 ./usr/lib/hinge/add_groundtruth_json.py -rw-r--r-- root/root 934 2017-08-13 23:05 ./usr/lib/hinge/clip_ends.py -rw-r--r-- root/root 2611 2017-08-13 23:05 ./usr/lib/hinge/compute_n50_from_draft.py -rwxr-xr-x root/root 5457 2017-08-13 23:05 ./usr/lib/hinge/condense_graph.py -rwxr-xr-x root/root 6852 2017-08-13 23:05 ./usr/lib/hinge/condense_graph_and_annotate.py -rwxr-xr-x root/root 8810 2017-08-13 23:05 ./usr/lib/hinge/condense_graph_annotate_clip_ends.py -rwxr-xr-x root/root 7164 2017-08-13 23:05 ./usr/lib/hinge/condense_graph_create_gfa_compute_n50.py -rwxr-xr-x root/root 6522 2017-08-13 23:05 ./usr/lib/hinge/condense_graph_with_gt.py -rwxr-xr-x root/root 1681 2017-08-13 23:05 ./usr/lib/hinge/connected.py -rwxr-xr-x root/root 231632 2018-02-04 19:07 ./usr/lib/hinge/consensus -rwxr-xr-x root/root 1240 2017-08-13 23:05 ./usr/lib/hinge/correct_head.py -rwxr-xr-x root/root 811 2017-08-13 23:05 ./usr/lib/hinge/create_bandage_file.py -rwxr-xr-x root/root 1836 2017-08-13 23:05 ./usr/lib/hinge/create_hgraph.py -rw-r--r-- root/root 871 2017-08-13 23:05 ./usr/lib/hinge/create_hgraph_nogt.py -rw-r--r-- root/root 1241 2017-08-13 23:05 ./usr/lib/hinge/download_NCTC_pipeline.py -rwxr-xr-x root/root 494296 2018-02-04 19:07 ./usr/lib/hinge/draft_assembly -rwxr-xr-x root/root 864 2017-08-13 23:05 ./usr/lib/hinge/draft_assembly.py -rwxr-xr-x root/root 864 2017-08-13 23:05 ./usr/lib/hinge/draft_assembly_not_perfect.py -rwxr-xr-x root/root 5882 2017-08-13 23:05 ./usr/lib/hinge/draw2.py -rwxr-xr-x root/root 4505 2017-08-13 23:05 ./usr/lib/hinge/draw2_pileup.py -rwxr-xr-x root/root 4325 2017-08-13 23:05 ./usr/lib/hinge/draw2_pileup_region.py -rwxr-xr-x root/root 5609 2017-08-13 23:05 ./usr/lib/hinge/draw2_pileup_w_repeat.py -rwxr-xr-x root/root 4936 2017-08-13 23:05 ./usr/lib/hinge/draw_pileup_region.py -rwxr-xr-x root/root 4984 2017-08-13 23:05 ./usr/lib/hinge/draw_pileup_region_find_bridges.py -rwxr-xr-x root/root 457 2017-08-13 23:05 ./usr/lib/hinge/fasta_to_fastq.py -rw-r--r-- root/root 1854 2017-08-13 23:05 ./usr/lib/hinge/get_NCTC_json.py -rwxr-xr-x root/root 2777 2017-08-13 23:05 ./usr/lib/hinge/get_consensus_gfa.py -rwxr-xr-x root/root 13769 2017-08-13 23:05 ./usr/lib/hinge/get_draft_annotation.py -rwxr-xr-x root/root 15185 2017-08-13 23:05 ./usr/lib/hinge/get_draft_path.py -rwxr-xr-x root/root 390 2017-08-13 23:05 ./usr/lib/hinge/get_draft_path_norevcomp.py -rwxr-xr-x root/root 453336 2018-02-04 19:07 ./usr/lib/hinge/get_maximal_reads -rw-r--r-- root/root 376 2017-08-13 23:05 ./usr/lib/hinge/get_single_strand.py -rwxr-xr-x root/root 498392 2018-02-04 19:07 ./usr/lib/hinge/hinging -rwxr-xr-x root/root 3734 2017-08-13 23:05 ./usr/lib/hinge/interface_utils.py -rwxr-xr-x root/root 1475 2017-08-13 23:05 ./usr/lib/hinge/longest_path.py -rwxr-xr-x root/root 20780 2017-08-13 23:05 ./usr/lib/hinge/merge_hinges.py -rwxr-xr-x root/root 578 2017-08-13 23:05 ./usr/lib/hinge/parallel_draw.sh -rwxr-xr-x root/root 390 2017-08-13 23:05 ./usr/lib/hinge/parallel_draw_large.sh -rwxr-xr-x root/root 1286 2017-08-13 23:05 ./usr/lib/hinge/parse.py -rwxr-xr-x root/root 751 2017-08-13 23:05 ./usr/lib/hinge/parse_alignment.py -rwxr-xr-x root/root 317 2017-08-13 23:05 ./usr/lib/hinge/parse_qv.py -rwxr-xr-x root/root 661 2017-08-13 23:05 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Architecture: amd64 Build-Space: 72212 Build-Time: 99 Distribution: bionic-proposed Host Architecture: amd64 Install-Time: 31 Job: hinge_0.5.0-3.dsc Machine Architecture: amd64 Package: hinge Package-Time: 131 Source-Version: 0.5.0-3 Space: 72212 Status: successful Version: 0.5.0-3 -------------------------------------------------------------------------------- Finished at 20180204-2323 Build needed 00:02:11, 72212k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 Scanning for processes to kill in build PACKAGEBUILD-14308683 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 Stopping target for build PACKAGEBUILD-14308683 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=amd64 PACKAGEBUILD-14308683 Removing build PACKAGEBUILD-14308683