https://launchpad.net/ubuntu/+source/hinge/0.5.0-4/+build/16296394 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-arm64-012 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 Buildd toolchain package versions: launchpad-buildd_165 python-lpbuildd_165 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.6 dpkg-dev_1.18.4ubuntu1.5 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 19 Jan 05:19:37 ntpdate[1834]: adjust time server 10.211.37.1 offset -0.072904 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16296394 /home/buildd/filecache-default/12198815be27835f4527655ec2ee7fabeb41ea11 Creating target for build PACKAGEBUILD-16296394 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16296394 Starting target for build PACKAGEBUILD-16296394 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16296394 'deb http://ftpmaster.internal/ubuntu disco main universe' 'deb http://ftpmaster.internal/ubuntu disco-security main universe' 'deb http://ftpmaster.internal/ubuntu disco-updates main universe' 'deb http://ftpmaster.internal/ubuntu disco-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-16296394 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16296394 Updating target for build PACKAGEBUILD-16296394 Get:1 http://ftpmaster.internal/ubuntu disco InRelease [243 kB] Get:2 http://ftpmaster.internal/ubuntu disco-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu disco-proposed InRelease [93.2 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 Packages [970 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu disco/universe arm64 Packages [8736 kB] Get:8 http://ftpmaster.internal/ubuntu disco/universe Translation-en [5204 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 Packages [140 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main Translation-en [70.3 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 Packages [523 kB] Get:12 http://ftpmaster.internal/ubuntu disco-proposed/universe Translation-en [305 kB] Fetched 16.9 MB in 7s (2477 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following package was automatically installed and is no longer required: libreadline7 Use 'sudo apt autoremove' to remove it. The following NEW packages will be installed: libreadline8 The following packages will be upgraded: apt bash binutils binutils-aarch64-linux-gnu binutils-common bsdutils coreutils cpp-8 dash debconf dpkg dpkg-dev e2fslibs e2fsprogs fdisk findutils g++-8 gcc-8 gcc-8-base gpg gpg-agent gpgconf gpgv grep gzip init init-system-helpers libapt-pkg5.0 libargon2-1 libasan5 libassuan0 libatomic1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcom-err2 libcomerr2 libdpkg-perl libext2fs2 libfdisk1 libgcc-8-dev libgcc1 libgdbm-compat4 libgdbm6 libgnutls30 libgomp1 libgpg-error0 libitm1 liblsan0 liblz4-1 libmount1 libmpfr6 libpng16-16 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libss2 libstdc++-8-dev libstdc++6 libtsan0 libubsan1 libuuid1 libzstd1 linux-libc-dev mount readline-common sed tar tzdata 71 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 38.0 MB of archives. After this operation, 767 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu disco/main arm64 bash arm64 5.0-1ubuntu1 [611 kB] Get:2 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 bsdutils arm64 1:2.33.1-0.1ubuntu1 [61.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 coreutils arm64 8.30-1ubuntu1 [1173 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 tar arm64 1.30+dfsg-4 [231 kB] Get:5 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg arm64 1.19.2ubuntu2 [1088 kB] Get:6 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 debconf all 1.5.70 [122 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 dash arm64 0.5.10.2-4ubuntu1 [84.1 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 findutils arm64 4.6.0+git+20190105-2 [322 kB] Get:9 http://ftpmaster.internal/ubuntu disco/main arm64 grep arm64 3.3-1 [143 kB] Get:10 http://ftpmaster.internal/ubuntu disco/main arm64 gzip arm64 1.9-3 [91.6 kB] Get:11 http://ftpmaster.internal/ubuntu disco/main arm64 sed arm64 4.7-1 [186 kB] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 init-system-helpers all 1.56+nmu1 [38.2 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main arm64 libgnutls30 arm64 3.6.5-2ubuntu1 [699 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libubsan1 arm64 8.2.0-14ubuntu1 [113 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtsan0 arm64 8.2.0-14ubuntu1 [269 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8-base arm64 8.2.0-14ubuntu1 [18.6 kB] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc1 arm64 1:8.2.0-14ubuntu1 [34.3 kB] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgomp1 arm64 8.2.0-14ubuntu1 [69.6 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libitm1 arm64 8.2.0-14ubuntu1 [24.4 kB] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libatomic1 arm64 8.2.0-14ubuntu1 [9140 B] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libasan5 arm64 8.2.0-14ubuntu1 [337 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 liblsan0 arm64 8.2.0-14ubuntu1 [120 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 cpp-8 arm64 8.2.0-14ubuntu1 [5712 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcc1-0 arm64 8.2.0-14ubuntu1 [36.3 kB] Get:25 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 g++-8 arm64 8.2.0-14ubuntu1 [6552 kB] Get:26 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gcc-8 arm64 8.2.0-14ubuntu1 [6477 kB] Get:27 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgcc-8-dev arm64 8.2.0-14ubuntu1 [857 kB] Get:28 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++-8-dev arm64 8.2.0-14ubuntu1 [1515 kB] Get:29 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libstdc++6 arm64 8.2.0-14ubuntu1 [371 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libmpfr6 arm64 4.0.2~rc1-1 [212 kB] Get:31 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libbinutils arm64 2.31.1-11ubuntu1 [461 kB] Get:32 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-common arm64 2.31.1-11ubuntu1 [194 kB] Get:33 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils arm64 2.31.1-11ubuntu1 [3364 B] Get:34 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 binutils-aarch64-linux-gnu arm64 2.31.1-11ubuntu1 [2177 kB] Get:35 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 liblz4-1 arm64 1.8.3-1ubuntu1 [64.6 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 libzstd1 arm64 1.3.8+dfsg-3 [204 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 libapt-pkg5.0 arm64 1.8.0~alpha3 [751 kB] Get:38 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgpg-error0 arm64 1.33-3 [54.8 kB] Get:39 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gpgv arm64 2.2.12-1ubuntu2 [182 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 apt arm64 1.8.0~alpha3 [1116 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 libext2fs2 arm64 1.44.5-1 [153 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 e2fsprogs arm64 1.44.5-1 [491 kB] Get:43 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libuuid1 arm64 2.33.1-0.1ubuntu1 [20.4 kB] Get:44 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libblkid1 arm64 2.33.1-0.1ubuntu1 [126 kB] Get:45 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libmount1 arm64 2.33.1-0.1ubuntu1 [137 kB] Get:46 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsmartcols1 arm64 2.33.1-0.1ubuntu1 [86.5 kB] Get:47 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 mount arm64 2.33.1-0.1ubuntu1 [110 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 init arm64 1.56+nmu1 [6080 B] Get:49 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libfdisk1 arm64 2.33.1-0.1ubuntu1 [160 kB] Get:50 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 fdisk arm64 2.33.1-0.1ubuntu1 [113 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main arm64 libcap-ng0 arm64 0.7.9-2 [10.5 kB] Get:52 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage-common all 2.8-2 [7016 B] Get:53 http://ftpmaster.internal/ubuntu disco/main arm64 libsemanage1 arm64 2.8-2 [79.7 kB] Get:54 http://ftpmaster.internal/ubuntu disco/main arm64 libcom-err2 arm64 1.44.5-1 [9216 B] Get:55 http://ftpmaster.internal/ubuntu disco/main arm64 libss2 arm64 1.44.5-1 [10.6 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 libargon2-1 arm64 0~20171227-0.2 [18.4 kB] Get:57 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 readline-common all 8.0-1 [53.4 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libreadline8 arm64 8.0-1 [123 kB] Get:59 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsqlite3-0 arm64 3.26.0+fossilbc891ac6b-1build1 [491 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main arm64 tzdata all 2018i-1 [189 kB] Get:61 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgdbm6 arm64 1.18.1-2build1 [26.6 kB] Get:62 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpng16-16 arm64 1.6.36-3 [174 kB] Get:63 http://ftpmaster.internal/ubuntu disco/main arm64 dpkg-dev all 1.19.2ubuntu2 [549 kB] Get:64 http://ftpmaster.internal/ubuntu disco/main arm64 libdpkg-perl all 1.19.2ubuntu2 [227 kB] Get:65 http://ftpmaster.internal/ubuntu disco/main arm64 e2fslibs arm64 1.44.5-1 [2704 B] Get:66 http://ftpmaster.internal/ubuntu disco/main arm64 libassuan0 arm64 2.5.2-1 [32.9 kB] Get:67 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gpg arm64 2.2.12-1ubuntu2 [437 kB] Get:68 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gpgconf arm64 2.2.12-1ubuntu2 [116 kB] Get:69 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 gpg-agent arm64 2.2.12-1ubuntu2 [213 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main arm64 libcomerr2 arm64 1.44.5-1 [2700 B] Get:71 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgdbm-compat4 arm64 1.18.1-2build1 [6020 B] Get:72 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 linux-libc-dev arm64 4.19.0-9.10 [1021 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.0 MB in 2s (24.3 MB/s) (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../bash_5.0-1ubuntu1_arm64.deb ... Unpacking bash (5.0-1ubuntu1) over (4.4.18-2ubuntu3) ... Setting up bash (5.0-1ubuntu1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.33.1-0.1ubuntu1_arm64.deb ... Unpacking bsdutils (1:2.33.1-0.1ubuntu1) over (1:2.32-0.1ubuntu2) ... Setting up bsdutils (1:2.33.1-0.1ubuntu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../coreutils_8.30-1ubuntu1_arm64.deb ... Unpacking coreutils (8.30-1ubuntu1) over (8.28-1ubuntu2) ... Setting up coreutils (8.30-1ubuntu1) ... (Reading database ... 12642 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-4_arm64.deb ... Unpacking tar (1.30+dfsg-4) over (1.30+dfsg-3) ... Setting up tar (1.30+dfsg-4) ... 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Setting up init (1.56+nmu1) ... Setting up libtsan0:arm64 (8.2.0-14ubuntu1) ... Setting up linux-libc-dev:arm64 (4.19.0-9.10) ... Setting up libmpfr6:arm64 (4.0.2~rc1-1) ... Setting up mount (2.33.1-0.1ubuntu1) ... Setting up libdpkg-perl (1.19.2ubuntu2) ... Setting up e2fsprogs (1.44.5-1) ... Setting up liblsan0:arm64 (8.2.0-14ubuntu1) ... Setting up libgdbm6:arm64 (1.18.1-2build1) ... Setting up binutils-common:arm64 (2.31.1-11ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libsqlite3-0:arm64 (3.26.0+fossilbc891ac6b-1build1) ... Setting up libcomerr2:arm64 (1.44.5-1) ... Setting up libgdbm-compat4:arm64 (1.18.1-2build1) ... Setting up libargon2-1:arm64 (0~20171227-0.2) ... Setting up libasan5:arm64 (8.2.0-14ubuntu1) ... Setting up libassuan0:arm64 (2.5.2-1) ... Setting up libitm1:arm64 (8.2.0-14ubuntu1) ... Setting up libreadline8:arm64 (8.0-1) ... Setting up libubsan1:arm64 (8.2.0-14ubuntu1) ... Setting up cpp-8 (8.2.0-14ubuntu1) ... Setting up libbinutils:arm64 (2.31.1-11ubuntu1) ... Setting up gpgconf (2.2.12-1ubuntu2) ... Setting up gpg-agent (2.2.12-1ubuntu2) ... Setting up binutils-aarch64-linux-gnu (2.31.1-11ubuntu1) ... Setting up libgcc-8-dev:arm64 (8.2.0-14ubuntu1) ... Setting up binutils (2.31.1-11ubuntu1) ... Setting up gpg (2.2.12-1ubuntu2) ... Setting up libstdc++-8-dev:arm64 (8.2.0-14ubuntu1) ... Setting up gcc-8 (8.2.0-14ubuntu1) ... Setting up g++-8 (8.2.0-14ubuntu1) ... Setting up dpkg-dev (1.19.2ubuntu2) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-16296394 arm64 disco-proposed -c chroot:build-PACKAGEBUILD-16296394 --arch=arm64 --dist=disco-proposed --nolog hinge_0.5.0-4.dsc Initiating build PACKAGEBUILD-16296394 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-141-generic #167-Ubuntu SMP Wed Dec 5 10:50:27 UTC 2018 aarch64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-arm64-012.buildd +==============================================================================+ | hinge 0.5.0-4 (arm64) 19 Jan 2019 05:20 | +==============================================================================+ Package: hinge Version: 0.5.0-4 Source Version: 0.5.0-4 Distribution: disco-proposed Machine Architecture: arm64 Host Architecture: arm64 Build Architecture: arm64 I: NOTICE: Log filtering will replace 'build/hinge-WOH_8T/hinge-0.5.0' with '<>' I: NOTICE: Log filtering will replace 'build/hinge-WOH_8T' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-16296394/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hinge_0.5.0-4.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-mf7rfu/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-mf7rfu/apt_archive ./ InRelease Get:2 copy:/<>/resolver-mf7rfu/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-mf7rfu/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-mf7rfu/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-mf7rfu/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (59.7 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-mf7rfu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 12~), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib Filtered Build-Depends: debhelper (>= 12~), cmake, libspdlog-dev, libboost-dev, libboost-graph-dev, libhdf5-dev, zlib1g-dev, pandoc, python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib dpkg-deb: building package 'sbuild-build-depends-hinge-dummy' in '/<>/resolver-AnAA8o/apt_archive/sbuild-build-depends-hinge-dummy.deb'. Ign:1 copy:/<>/resolver-AnAA8o/apt_archive ./ InRelease Get:2 copy:/<>/resolver-AnAA8o/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-AnAA8o/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-AnAA8o/apt_archive ./ Sources [324 B] Get:5 copy:/<>/resolver-AnAA8o/apt_archive ./ Packages [646 B] Fetched 3089 B in 0s (103 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install hinge build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libreadline7 Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-dev libboost-graph-dev libboost-graph1.67-dev libboost-graph1.67.0 libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-test1.67-dev libboost-test1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspdlog-dev libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-kiwisolver python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2 python2-minimal python2.7 python2.7-minimal ttf-bitstream-vera zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libboost-doc graphviz libboost1.67-doc libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev libboost-coroutine1.67-dev libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev libboost-filesystem1.67-dev libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev libboost-program-options1.67-dev libboost-python1.67-dev libboost-random1.67-dev libboost-regex1.67-dev libboost-signals1.67-dev libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user libhdf5-doc libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php ruby r-base-core libjs-mathjax node-katex libmail-box-perl python-doc python-tk python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython librsvg2-common python-cairocffi python-configobj python-excelerator python-gobject python-matplotlib-doc python-nose python-qt4 python-scipy python-sip python-tornado python-traits python-wxgtk3.0 texlive-extra-utils ttf-staypuft python-gdal python-pygraphviz | python-pydot gfortran python-dev python-numpy-dbg python-numpy-doc python-pbcore-doc python-pexpect-doc python-setuptools python-pyparsing-doc python2-doc python2.7-doc binfmt-support Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python-pil python-tk python-yaml python-h5py The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data daligner dascrubber dazzdb debhelper dh-autoreconf dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0 libarchive-zip-perl libarchive13 libasn1-8-heimdal libblas3 libboost-dev libboost-graph-dev libboost-graph1.67-dev libboost-graph1.67.0 libboost-regex1.67.0 libboost-serialization1.67-dev libboost-serialization1.67.0 libboost-test1.67-dev libboost-test1.67.0 libboost1.67-dev libbsd0 libcroco3 libcurl3-gnutls libcurl4 libdeflate0 libelf1 libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libhdf5-103 libhdf5-cpp-103 libhdf5-dev libheimbase1-heimdal libheimntlm0-heimdal libhts2 libhx509-5-heimdal libicu63 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery libjs-jquery-ui libjs-sphinxdoc libjs-underscore libjsoncpp1 libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common liblua5.1-0 libmagic-mgc libmagic1 libnghttp2-14 libpipeline1 libpsl5 libpython-stdlib libpython2-stdlib libpython2.7-minimal libpython2.7-stdlib librhash0 libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libspdlog-dev libsz2 libtool libuchardet0 libuv1 libwind0-heimdal libxml2 libyaml-0-2 m4 man-db mime-support pandoc pandoc-data po-debconf python python-appdirs python-backports.functools-lru-cache python-colorama python-colormap python-configparser python-cycler python-dateutil python-decorator python-easydev python-kiwisolver python-matplotlib python-matplotlib-data python-minimal python-networkx python-numpy python-pbcore python-pexpect python-pkg-resources python-ptyprocess python-pyparsing python-pysam python-six python-subprocess32 python-tz python-ujson python2 python2-minimal python2.7 python2.7-minimal sbuild-build-depends-hinge-dummy ttf-bitstream-vera zlib1g-dev 0 upgraded, 140 newly installed, 0 to remove and 1 not upgraded. Need to get 87.2 MB of archives. After this operation, 518 MB of additional disk space will be used. Get:1 copy:/<>/resolver-AnAA8o/apt_archive ./ sbuild-build-depends-hinge-dummy 0.invalid.0 [972 B] Get:2 http://ftpmaster.internal/ubuntu disco/main arm64 libbsd0 arm64 0.9.1-1 [39.4 kB] Get:3 http://ftpmaster.internal/ubuntu disco/main arm64 bsdmainutils arm64 11.1.2ubuntu2 [175 kB] Get:4 http://ftpmaster.internal/ubuntu disco/main arm64 libuchardet0 arm64 0.0.6-3 [65.0 kB] Get:5 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 groff-base arm64 1.22.4-2 [813 kB] Get:6 http://ftpmaster.internal/ubuntu disco/main arm64 libpipeline1 arm64 1.5.0-2 [24.2 kB] Get:7 http://ftpmaster.internal/ubuntu disco/main arm64 man-db arm64 2.8.5-1 [1086 kB] Get:8 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpython2.7-minimal arm64 2.7.15-5build1 [335 kB] Get:9 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python2.7-minimal arm64 2.7.15-5build1 [1232 kB] Get:10 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python2-minimal arm64 2.7.15-4 [28.0 kB] Get:11 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python-minimal arm64 2.7.15-4 [5984 B] Get:12 http://ftpmaster.internal/ubuntu disco/main arm64 mime-support all 3.60ubuntu1 [30.1 kB] Get:13 http://ftpmaster.internal/ubuntu disco/main arm64 libexpat1 arm64 2.2.6-1 [68.2 kB] Get:14 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpython2.7-stdlib arm64 2.7.15-5build1 [1886 kB] Get:15 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python2.7 arm64 2.7.15-5build1 [239 kB] Get:16 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpython2-stdlib arm64 2.7.15-4 [7596 B] Get:17 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libpython-stdlib arm64 2.7.15-4 [5824 B] Get:18 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python2 arm64 2.7.15-4 [26.5 kB] Get:19 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python arm64 2.7.15-4 [7832 B] Get:20 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libmagic-mgc arm64 1:5.35-2 [200 kB] Get:21 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libmagic1 arm64 1:5.35-2 [70.5 kB] Get:22 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 file arm64 1:5.35-2 [23.0 kB] Get:23 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libelf1 arm64 0.175-2 [43.6 kB] Get:24 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libglib2.0-0 arm64 2.59.0-1 [1146 kB] Get:25 http://ftpmaster.internal/ubuntu disco/main arm64 libicu63 arm64 63.1-5 [8144 kB] Get:26 http://ftpmaster.internal/ubuntu disco/main arm64 libxml2 arm64 2.9.4+dfsg1-7ubuntu3 [562 kB] Get:27 http://ftpmaster.internal/ubuntu disco/main arm64 libyaml-0-2 arm64 0.2.1-1 [40.8 kB] Get:28 http://ftpmaster.internal/ubuntu disco/main arm64 gettext-base arm64 0.19.8.1-9 [48.0 kB] Get:29 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5support0 arm64 1.17-1 [32.6 kB] Get:30 http://ftpmaster.internal/ubuntu disco/main arm64 libk5crypto3 arm64 1.17-1 [86.9 kB] Get:31 http://ftpmaster.internal/ubuntu disco/main arm64 libkeyutils1 arm64 1.5.9-9.3 [9512 B] Get:32 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-3 arm64 1.17-1 [314 kB] Get:33 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi-krb5-2 arm64 1.17-1 [114 kB] Get:34 http://ftpmaster.internal/ubuntu disco/main arm64 libpsl5 arm64 0.20.2-2 [49.9 kB] Get:35 http://ftpmaster.internal/ubuntu disco/main arm64 libsigsegv2 arm64 2.12-2 [13.3 kB] Get:36 http://ftpmaster.internal/ubuntu disco/main arm64 m4 arm64 1.4.18-2 [194 kB] Get:37 http://ftpmaster.internal/ubuntu disco/main arm64 autoconf all 2.69-11 [322 kB] Get:38 http://ftpmaster.internal/ubuntu disco/main arm64 autotools-dev all 20180224.1 [39.6 kB] Get:39 http://ftpmaster.internal/ubuntu disco/main arm64 automake all 1:1.16.1-4 [522 kB] Get:40 http://ftpmaster.internal/ubuntu disco/main arm64 autopoint all 0.19.8.1-9 [412 kB] Get:41 http://ftpmaster.internal/ubuntu disco/main arm64 cmake-data all 3.13.2-1 [1457 kB] Get:42 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive13 arm64 3.3.3-3 [283 kB] Get:43 http://ftpmaster.internal/ubuntu disco/main arm64 libroken18-heimdal arm64 7.5.0+dfsg-2.1 [39.1 kB] Get:44 http://ftpmaster.internal/ubuntu disco/main arm64 libasn1-8-heimdal arm64 7.5.0+dfsg-2.1 [149 kB] Get:45 http://ftpmaster.internal/ubuntu disco/main arm64 libheimbase1-heimdal arm64 7.5.0+dfsg-2.1 [27.8 kB] Get:46 http://ftpmaster.internal/ubuntu disco/main arm64 libhcrypto4-heimdal arm64 7.5.0+dfsg-2.1 [85.2 kB] Get:47 http://ftpmaster.internal/ubuntu disco/main arm64 libwind0-heimdal arm64 7.5.0+dfsg-2.1 [47.4 kB] Get:48 http://ftpmaster.internal/ubuntu disco/main arm64 libhx509-5-heimdal arm64 7.5.0+dfsg-2.1 [99.4 kB] Get:49 http://ftpmaster.internal/ubuntu disco/main arm64 libkrb5-26-heimdal arm64 7.5.0+dfsg-2.1 [191 kB] Get:50 http://ftpmaster.internal/ubuntu disco/main arm64 libheimntlm0-heimdal arm64 7.5.0+dfsg-2.1 [14.7 kB] Get:51 http://ftpmaster.internal/ubuntu disco/main arm64 libgssapi3-heimdal arm64 7.5.0+dfsg-2.1 [88.2 kB] Get:52 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsasl2-modules-db arm64 2.1.27~rc8-1 [14.5 kB] Get:53 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libsasl2-2 arm64 2.1.27~rc8-1 [48.6 kB] Get:54 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libldap-common all 2.4.47+dfsg-2ubuntu1 [16.2 kB] Get:55 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libldap-2.4-2 arm64 2.4.47+dfsg-2ubuntu1 [145 kB] Get:56 http://ftpmaster.internal/ubuntu disco/main arm64 libnghttp2-14 arm64 1.35.1-1 [75.9 kB] Get:57 http://ftpmaster.internal/ubuntu disco/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2 [49.8 kB] Get:58 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcurl4 arm64 7.63.0-1 [205 kB] Get:59 http://ftpmaster.internal/ubuntu disco/main arm64 libjsoncpp1 arm64 1.7.4-3 [69.2 kB] Get:60 http://ftpmaster.internal/ubuntu disco/main arm64 librhash0 arm64 1.3.7-1 [92.7 kB] Get:61 http://ftpmaster.internal/ubuntu disco/main arm64 libuv1 arm64 1.24.0-1 [64.1 kB] Get:62 http://ftpmaster.internal/ubuntu disco/main arm64 cmake arm64 3.13.2-1 [3037 kB] Get:63 http://ftpmaster.internal/ubuntu disco/universe arm64 daligner arm64 1.0+git20180524.fd21879-1 [161 kB] Get:64 http://ftpmaster.internal/ubuntu disco/universe arm64 dascrubber arm64 1.1-1 [147 kB] Get:65 http://ftpmaster.internal/ubuntu disco/universe arm64 dazzdb arm64 1.0+git20180908.0bd5e07-1 [154 kB] Get:66 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libtool all 2.4.6-8 [195 kB] Get:67 http://ftpmaster.internal/ubuntu disco/main arm64 dh-autoreconf all 19 [16.1 kB] Get:68 http://ftpmaster.internal/ubuntu disco/main arm64 libarchive-zip-perl all 1.64-1 [84.9 kB] Get:69 http://ftpmaster.internal/ubuntu disco/main arm64 libfile-stripnondeterminism-perl all 1.1.0-1 [13.6 kB] Get:70 http://ftpmaster.internal/ubuntu disco/main arm64 dh-strip-nondeterminism all 1.1.0-1 [5100 B] Get:71 http://ftpmaster.internal/ubuntu disco/main arm64 dwz arm64 0.12-3 [71.8 kB] Get:72 http://ftpmaster.internal/ubuntu disco/main arm64 libcroco3 arm64 0.6.12-3 [76.8 kB] Get:73 http://ftpmaster.internal/ubuntu disco/main arm64 gettext arm64 0.19.8.1-9 [853 kB] Get:74 http://ftpmaster.internal/ubuntu disco/main arm64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:75 http://ftpmaster.internal/ubuntu disco/main arm64 po-debconf all 1.0.21 [233 kB] Get:76 http://ftpmaster.internal/ubuntu disco/main arm64 debhelper all 12ubuntu1 [887 kB] Get:77 http://ftpmaster.internal/ubuntu disco/universe arm64 fonts-lyx all 2.3.2-1 [154 kB] Get:78 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 hdf5-helpers arm64 1.10.4+repack-9 [14.0 kB] Get:79 http://ftpmaster.internal/ubuntu disco/universe arm64 libaec0 arm64 1.0.2-1 [17.8 kB] Get:80 http://ftpmaster.internal/ubuntu disco/main arm64 libblas3 arm64 3.8.0-2 [89.8 kB] Get:81 http://ftpmaster.internal/ubuntu disco/main arm64 libboost1.67-dev arm64 1.67.0-11 [8362 kB] Get:82 http://ftpmaster.internal/ubuntu disco/main arm64 libboost-dev arm64 1.67.0.1 [3228 B] Get:83 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-regex1.67.0 arm64 1.67.0-11 [431 kB] Get:84 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-graph1.67.0 arm64 1.67.0-11 [283 kB] Get:85 http://ftpmaster.internal/ubuntu disco/main arm64 libboost-serialization1.67.0 arm64 1.67.0-11 [287 kB] Get:86 http://ftpmaster.internal/ubuntu disco/main arm64 libboost-serialization1.67-dev arm64 1.67.0-11 [332 kB] Get:87 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-test1.67.0 arm64 1.67.0-11 [410 kB] Get:88 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-test1.67-dev arm64 1.67.0-11 [478 kB] Get:89 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-graph1.67-dev arm64 1.67.0-11 [298 kB] Get:90 http://ftpmaster.internal/ubuntu disco/universe arm64 libboost-graph-dev arm64 1.67.0.1 [3132 B] Get:91 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libcurl3-gnutls arm64 7.63.0-1 [203 kB] Get:92 http://ftpmaster.internal/ubuntu disco/universe arm64 libdeflate0 arm64 1.2-1 [51.4 kB] Get:93 http://ftpmaster.internal/ubuntu disco/main arm64 libfreetype6 arm64 2.9.1-3 [312 kB] Get:94 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 libgfortran5 arm64 8.2.0-14ubuntu1 [308 kB] Get:95 http://ftpmaster.internal/ubuntu disco/universe arm64 libsz2 arm64 1.0.2-1 [4948 B] Get:96 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libhdf5-103 arm64 1.10.4+repack-9 [1144 kB] Get:97 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libhdf5-cpp-103 arm64 1.10.4+repack-9 [108 kB] Get:98 http://ftpmaster.internal/ubuntu disco/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-0ubuntu2 [171 kB] Get:99 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8 arm64 2.0.1-0ubuntu1 [100 kB] Get:100 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-turbo8-dev arm64 2.0.1-0ubuntu1 [214 kB] Get:101 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8 arm64 8c-2ubuntu8 [2198 B] Get:102 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg8-dev arm64 8c-2ubuntu8 [1550 B] Get:103 http://ftpmaster.internal/ubuntu disco/main arm64 libjpeg-dev arm64 8c-2ubuntu8 [1546 B] Get:104 http://ftpmaster.internal/ubuntu disco/universe arm64 libaec-dev arm64 1.0.2-1 [15.5 kB] Get:105 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libhdf5-dev arm64 1.10.4+repack-9 [2664 kB] Get:106 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 libhts2 arm64 1.9-10 [265 kB] Get:107 http://ftpmaster.internal/ubuntu disco/main arm64 libjs-jquery all 3.2.1-1 [152 kB] Get:108 http://ftpmaster.internal/ubuntu disco/universe arm64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] Get:109 http://ftpmaster.internal/ubuntu disco/main arm64 libjs-underscore all 1.8.3~dfsg-1 [59.9 kB] Get:110 http://ftpmaster.internal/ubuntu disco/main arm64 libjs-sphinxdoc all 1.7.9-1 [92.3 kB] Get:111 http://ftpmaster.internal/ubuntu disco/main arm64 liblapack3 arm64 3.8.0-2 [1478 kB] Get:112 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 liblua5.1-0 arm64 5.1.5-8.1build3 [93.4 kB] Get:113 http://ftpmaster.internal/ubuntu disco/universe arm64 libspdlog-dev arm64 1:1.3.0-2 [176 kB] Get:114 http://ftpmaster.internal/ubuntu disco/universe arm64 pandoc-data all 2.2.1-3build1 [75.3 kB] Get:115 http://ftpmaster.internal/ubuntu disco/universe arm64 pandoc arm64 2.2.1-3build1 [18.1 MB] Get:116 http://ftpmaster.internal/ubuntu disco/main arm64 python-appdirs all 1.4.3-1 [10.4 kB] Get:117 http://ftpmaster.internal/ubuntu disco/universe arm64 python-backports.functools-lru-cache all 1.5-1 [6172 B] Get:118 http://ftpmaster.internal/ubuntu disco/main arm64 python-colorama all 0.3.7-1 [22.6 kB] Get:119 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python-six all 1.12.0-1 [11.6 kB] Get:120 http://ftpmaster.internal/ubuntu disco/main arm64 python-dateutil all 2.7.3-1 [75.8 kB] Get:121 http://ftpmaster.internal/ubuntu disco/universe arm64 ttf-bitstream-vera all 1.10-8 [352 kB] Get:122 http://ftpmaster.internal/ubuntu disco/universe arm64 python-matplotlib-data all 2.2.2-4ubuntu2 [3775 kB] Get:123 http://ftpmaster.internal/ubuntu disco/main arm64 python-pyparsing all 2.2.0+dfsg1-2 [52.1 kB] Get:124 http://ftpmaster.internal/ubuntu disco/main arm64 python-tz all 2018.9-1 [31.1 kB] Get:125 http://ftpmaster.internal/ubuntu disco/main arm64 python-numpy arm64 1:1.14.5-1ubuntu8 [1889 kB] Get:126 http://ftpmaster.internal/ubuntu disco/universe arm64 python-cycler all 0.10.0-1 [7520 B] Get:127 http://ftpmaster.internal/ubuntu disco-proposed/main arm64 python-pkg-resources all 40.6.3-1 [129 kB] Get:128 http://ftpmaster.internal/ubuntu disco/universe arm64 python-kiwisolver arm64 1.0.1-2build2 [56.9 kB] Get:129 http://ftpmaster.internal/ubuntu disco/universe arm64 python-subprocess32 arm64 3.5.3-1 [26.5 kB] Get:130 http://ftpmaster.internal/ubuntu disco/universe arm64 python-matplotlib arm64 2.2.2-4ubuntu2 [4183 kB] Get:131 http://ftpmaster.internal/ubuntu disco/universe arm64 python-ptyprocess all 0.6.0-1 [13.1 kB] Get:132 http://ftpmaster.internal/ubuntu disco/universe arm64 python-pexpect all 4.6.0-1 [44.0 kB] Get:133 http://ftpmaster.internal/ubuntu disco/universe arm64 python-easydev all 0.9.35+dfsg-2 [39.9 kB] Get:134 http://ftpmaster.internal/ubuntu disco/universe arm64 python-colormap all 1.0.1-2 [14.8 kB] Get:135 http://ftpmaster.internal/ubuntu disco/main arm64 python-configparser all 3.5.0b2-1 [59.3 kB] Get:136 http://ftpmaster.internal/ubuntu disco/main arm64 python-decorator all 4.3.0-1.1 [9524 B] Get:137 http://ftpmaster.internal/ubuntu disco/universe arm64 python-networkx all 2.2-1ubuntu1 [1002 kB] Get:138 http://ftpmaster.internal/ubuntu disco-proposed/universe arm64 python-pysam arm64 0.15.1+ds-1 [1413 kB] Get:139 http://ftpmaster.internal/ubuntu disco/universe arm64 python-pbcore all 1.6.5+dfsg-1 [9098 kB] Get:140 http://ftpmaster.internal/ubuntu disco/universe arm64 python-ujson arm64 1.35-3build1 [23.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.2 MB in 6s (15.4 MB/s) Selecting previously unselected package libbsd0:arm64. (Reading database ... 12661 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_arm64.deb ... Unpacking libbsd0:arm64 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_arm64.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../02-libuchardet0_0.0.6-3_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-2_arm64.deb ... Unpacking groff-base (1.22.4-2) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../04-libpipeline1_1.5.0-2_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.0-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-1_arm64.deb ... Unpacking man-db (2.8.5-1) ... 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(Reading database ... 14022 files and directories currently installed.) Preparing to unpack .../python2_2.7.15-4_arm64.deb ... Unpacking python2 (2.7.15-4) ... Setting up python-minimal (2.7.15-4) ... Selecting previously unselected package python. (Reading database ... 14055 files and directories currently installed.) Preparing to unpack .../000-python_2.7.15-4_arm64.deb ... Unpacking python (2.7.15-4) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.35-2_arm64.deb ... Unpacking libmagic-mgc (1:5.35-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../002-libmagic1_1%3a5.35-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.35-2) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.35-2_arm64.deb ... Unpacking file (1:5.35-2) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../004-libelf1_0.175-2_arm64.deb ... 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Setting up libroken18-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libbsd0:arm64 (0.9.1-1) ... Setting up libkrb5support0:arm64 (1.17-1) ... Setting up libxml2:arm64 (2.9.4+dfsg1-7ubuntu3) ... Setting up libuchardet0:arm64 (0.0.6-3) ... Setting up libfreetype6:arm64 (2.9.1-3) ... Setting up libmagic-mgc (1:5.35-2) ... Setting up libmagic1:arm64 (1:5.35-2) ... Setting up librhash0:arm64 (1.3.7-1) ... Setting up libcroco3:arm64 (0.6.12-3) ... Setting up libyaml-0-2:arm64 (0.2.1-1) ... Setting up libblas3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg-turbo8-dev:arm64 (2.0.1-0ubuntu1) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... Setting up libspdlog-dev:arm64 (1:1.3.0-2) ... Setting up dwz (0.12-3) ... Setting up autotools-dev (20180224.1) ... Setting up libboost1.67-dev:arm64 (1.67.0-11) ... Setting up libheimbase1-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up ttf-bitstream-vera (1.10-8) ... Setting up libboost-serialization1.67.0:arm64 (1.67.0-11) ... Setting up liblua5.1-0:arm64 (5.1.5-8.1build3) ... Setting up libboost-dev:arm64 (1.67.0.1) ... Setting up libkeyutils1:arm64 (1.5.9-9.3) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgfortran5:arm64 (8.2.0-14ubuntu1) ... Setting up libboost-test1.67.0:arm64 (1.67.0-11) ... Setting up hdf5-helpers (1.10.4+repack-9) ... Setting up libboost-regex1.67.0:arm64 (1.67.0-11) ... Setting up libpython2.7-stdlib:arm64 (2.7.15-5build1) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-lyx (2.3.2-1) ... Setting up libsz2:arm64 (1.0.2-1) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-0ubuntu2) ... Setting up libfile-stripnondeterminism-perl (1.1.0-1) ... Setting up libjpeg8:arm64 (8c-2ubuntu8) ... Setting up libjsoncpp1:arm64 (1.7.4-3) ... Setting up libk5crypto3:arm64 (1.17-1) ... Setting up python-matplotlib-data (2.2.2-4ubuntu2) ... Setting up libwind0-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up pandoc (2.2.1-3build1) ... Setting up gettext (0.19.8.1-9) ... Setting up libboost-serialization1.67-dev:arm64 (1.67.0-11) ... Setting up libarchive13:arm64 (3.3.3-3) ... Setting up libasn1-8-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up groff-base (1.22.4-2) ... Setting up liblapack3:arm64 (3.8.0-2) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libhcrypto4-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up libaec-dev:arm64 (1.0.2-1) ... Setting up python2.7 (2.7.15-5build1) ... Setting up libboost-test1.67-dev:arm64 (1.67.0-11) ... Setting up autoconf (2.69-11) ... Setting up libhdf5-103:arm64 (1.10.4+repack-9) ... Setting up file (1:5.35-2) ... Setting up libboost-graph1.67.0:arm64 (1.67.0-11) ... Setting up libhx509-5-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libjpeg8-dev:arm64 (8c-2ubuntu8) ... Setting up libjpeg-dev:arm64 (8c-2ubuntu8) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.5-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libpython2-stdlib:arm64 (2.7.15-4) ... Setting up libkrb5-3:arm64 (1.17-1) ... Setting up libkrb5-26-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up libheimntlm0-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up libtool (2.4.6-8) ... Setting up po-debconf (1.0.21) ... Setting up libboost-graph1.67-dev:arm64 (1.67.0-11) ... Setting up libhdf5-cpp-103:arm64 (1.10.4+repack-9) ... Setting up libhdf5-dev (1.10.4+repack-9) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python2 (2.7.15-4) ... Setting up libgssapi-krb5-2:arm64 (1.17-1) ... Setting up libpython-stdlib:arm64 (2.7.15-4) ... Setting up libgssapi3-heimdal:arm64 (7.5.0+dfsg-2.1) ... Setting up python (2.7.15-4) ... Setting up python-pyparsing (2.2.0+dfsg1-2) ... Setting up python-backports.functools-lru-cache (1.5-1) ... Setting up python-ujson (1.35-3build1) ... Setting up libboost-graph-dev:arm64 (1.67.0.1) ... Setting up python-tz (2018.9-1) ... Setting up python-colorama (0.3.7-1) ... Setting up python-pkg-resources (40.6.3-1) ... Setting up python-numpy (1:1.14.5-1ubuntu8) ... Setting up python-configparser (3.5.0b2-1) ... Setting up python-six (1.12.0-1) ... Setting up python-ptyprocess (0.6.0-1) ... Setting up libldap-2.4-2:arm64 (2.4.47+dfsg-2ubuntu1) ... Setting up python-appdirs (1.4.3-1) ... Setting up python-decorator (4.3.0-1.1) ... Setting up python-subprocess32 (3.5.3-1) ... Setting up python-networkx (2.2-1ubuntu1) ... Setting up python-kiwisolver (1.0.1-2build2) ... Setting up libcurl3-gnutls:arm64 (7.63.0-1) ... Setting up libcurl4:arm64 (7.63.0-1) ... Setting up python-pexpect (4.6.0-1) ... Setting up python-cycler (0.10.0-1) ... Setting up python-dateutil (2.7.3-1) ... Setting up cmake (3.13.2-1) ... Setting up libhts2:arm64 (1.9-10) ... Setting up python-easydev (0.9.35+dfsg-2) ... Setting up python-pysam (0.15.1+ds-1) ... Setting up python-matplotlib (2.2.2-4ubuntu2) ... Setting up python-pbcore (1.6.5+dfsg-1) ... Setting up python-colormap (1.0.1-2) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.0-1) ... Setting up debhelper (12ubuntu1) ... Setting up sbuild-build-depends-hinge-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.28-0ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-141-generic arm64 (aarch64) Toolchain package versions: binutils_2.31.1-11ubuntu1 dpkg-dev_1.19.2ubuntu2 g++-8_8.2.0-14ubuntu1 gcc-8_8.2.0-14ubuntu1 libc6-dev_2.28-0ubuntu1 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 linux-libc-dev_4.19.0-9.10 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.8.0~alpha3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1ubuntu8 base-passwd_3.5.45 bash_5.0-1ubuntu1 binutils_2.31.1-11ubuntu1 binutils-aarch64-linux-gnu_2.31.1-11ubuntu1 binutils-common_2.31.1-11ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.33.1-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-9 ca-certificates_20180409 cmake_3.13.2-1 cmake-data_3.13.2-1 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libcroco3_0.6.12-3 libcryptsetup12_2:2.0.4-2ubuntu2 libcurl3-gnutls_7.63.0-1 libcurl4_7.63.0-1 libdb5.3_5.3.28+dfsg1-0.2 libdebconfclient0_0.244ubuntu1 libdeflate0_1.2-1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu4 libdpkg-perl_1.19.2ubuntu2 libelf1_0.175-2 libexpat1_2.2.6-1 libext2fs2_1.44.5-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1ubuntu1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.1.0-1 libfreetype6_2.9.1-3 libgcc-8-dev_8.2.0-14ubuntu1 libgcc1_1:8.2.0-14ubuntu1 libgcrypt20_1.8.4-3ubuntu1 libgdbm-compat4_1.18.1-2build1 libgdbm6_1.18.1-2build1 libgfortran5_8.2.0-14ubuntu1 libglib2.0-0_2.59.0-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.5-2ubuntu1 libgomp1_8.2.0-14ubuntu1 libgpg-error0_1.33-3 libgssapi-krb5-2_1.17-1 libgssapi3-heimdal_7.5.0+dfsg-2.1 libhcrypto4-heimdal_7.5.0+dfsg-2.1 libhdf5-103_1.10.4+repack-9 libhdf5-cpp-103_1.10.4+repack-9 libhdf5-dev_1.10.4+repack-9 libheimbase1-heimdal_7.5.0+dfsg-2.1 libheimntlm0-heimdal_7.5.0+dfsg-2.1 libhogweed4_3.4.1~rc1-1 libhts2_1.9-10 libhx509-5-heimdal_7.5.0+dfsg-2.1 libicu63_63.1-5 libidn11_1.33-2.2ubuntu1 libidn2-0_2.0.5-1 libip4tc0_1.6.1-2ubuntu3 libisl19_0.20-2 libitm1_8.2.0-14ubuntu1 libjpeg-dev_8c-2ubuntu8 libjpeg-turbo8_2.0.1-0ubuntu1 libjpeg-turbo8-dev_2.0.1-0ubuntu1 libjpeg8_8c-2ubuntu8 libjpeg8-dev_8c-2ubuntu8 libjs-jquery_3.2.1-1 libjs-jquery-ui_1.12.1+dfsg-5 libjs-sphinxdoc_1.7.9-1 libjs-underscore_1.8.3~dfsg-1 libjson-c3_0.12.1-1.3 libjsoncpp1_1.7.4-3 libk5crypto3_1.17-1 libkeyutils1_1.5.9-9.3 libkmod2_25-1ubuntu2 libkrb5-26-heimdal_7.5.0+dfsg-2.1 libkrb5-3_1.17-1 libkrb5support0_1.17-1 liblapack3_3.8.0-2 libldap-2.4-2_2.4.47+dfsg-2ubuntu1 libldap-common_2.4.47+dfsg-2ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8.2.0-14ubuntu1 liblua5.1-0_5.1.5-8.1build3 liblz4-1_1.8.3-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.35-2 libmagic1_1:5.35-2 libmount1_2.33.1-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.2~rc1-1 libncurses6_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-11 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpng16-16_1.6.36-3 libprocps7_2:3.3.15-2ubuntu1 libpsl5_0.20.2-2 libpython-stdlib_2.7.15-4 libpython2-stdlib_2.7.15-4 libpython2.7-minimal_2.7.15-5build1 libpython2.7-stdlib_2.7.15-5build1 libreadline7_7.0-5 libreadline8_8.0-1 librhash0_1.3.7-1 libroken18-heimdal_7.5.0+dfsg-2.1 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3ubuntu2 libselinux1_2.8-1build2 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.33.1-0.1ubuntu1 libspdlog-dev_1:1.3.0-2 libsqlite3-0_3.26.0+fossilbc891ac6b-1build1 libss2_1.44.5-1 libssl1.1_1.1.1a-1ubuntu2 libstdc++-8-dev_8.2.0-14ubuntu1 libstdc++6_8.2.0-14ubuntu1 libsystemd0_239-7ubuntu15 libsz2_1.0.2-1 libtasn1-6_4.13-3 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-8 libtsan0_8.2.0-14ubuntu1 libubsan1_8.2.0-14ubuntu1 libuchardet0_0.0.6-3 libudev1_239-7ubuntu15 libunistring2_0.9.10-1ubuntu1 libusb-0.1-4_2:0.1.12-32 libustr-1.0-1_1.0.4-6 libuuid1_2.33.1-0.1ubuntu1 libuv1_1.24.0-1 libwind0-heimdal_7.5.0+dfsg-2.1 libxml2_2.9.4+dfsg1-7ubuntu3 libyaml-0-2_0.2.1-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.0-9.10 lockfile-progs_0.1.18 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.33.1-0.1ubuntu1 multiarch-support_2.28-0ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.1a-1ubuntu2 optipng_0.7.6-1.1 pandoc_2.2.1-3build1 pandoc-data_2.2.1-3build1 passwd_1:4.5-1ubuntu1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1build2 pkgbinarymangler_143 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 python_2.7.15-4 python-appdirs_1.4.3-1 python-backports.functools-lru-cache_1.5-1 python-colorama_0.3.7-1 python-colormap_1.0.1-2 python-configparser_3.5.0b2-1 python-cycler_0.10.0-1 python-dateutil_2.7.3-1 python-decorator_4.3.0-1.1 python-easydev_0.9.35+dfsg-2 python-kiwisolver_1.0.1-2build2 python-matplotlib_2.2.2-4ubuntu2 python-matplotlib-data_2.2.2-4ubuntu2 python-minimal_2.7.15-4 python-networkx_2.2-1ubuntu1 python-numpy_1:1.14.5-1ubuntu8 python-pbcore_1.6.5+dfsg-1 python-pexpect_4.6.0-1 python-pkg-resources_40.6.3-1 python-ptyprocess_0.6.0-1 python-pyparsing_2.2.0+dfsg1-2 python-pysam_0.15.1+ds-1 python-six_1.12.0-1 python-subprocess32_3.5.3-1 python-tz_2018.9-1 python-ujson_1.35-3build1 python2_2.7.15-4 python2-minimal_2.7.15-4 python2.7_2.7.15-5build1 python2.7-minimal_2.7.15-5build1 readline-common_8.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hinge-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 systemd_239-7ubuntu15 systemd-sysv_239-7ubuntu15 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu2 tar_1.30+dfsg-4 ttf-bitstream-vera_1.10-8 tzdata_2018i-1 ubuntu-keyring_2018.09.18.1 util-linux_2.32-0.1ubuntu2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 zlib1g-dev_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jan 18 21:55:57 2019 UTC gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hinge_0.5.0-4.dsc dpkg-source: info: extracting hinge in hinge-0.5.0 dpkg-source: info: unpacking hinge_0.5.0.orig.tar.gz dpkg-source: info: unpacking hinge_0.5.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying external-spdlog.patch dpkg-source: info: applying libspdlog-14.0.patch dpkg-source: info: applying libspdlog-1:1.3.0 Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-16296394 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-16296394 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-16296394 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hinge dpkg-buildpackage: info: source version 0.5.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. -- The C compiler identification is GNU 8.2.0 -- The CXX compiler identification is GNU 8.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.2.11") -- Boost version: 1.67.0 -- Found the following Boost libraries: -- graph -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/obj-aarch64-linux-gnu dh_auto_build -a cd obj-aarch64-linux-gnu && make -j4 "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin /<>/obj-aarch64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= Scanning dependencies of target man Scanning dependencies of target kmer_lookup make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' Scanning dependencies of target DW_banded make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' Scanning dependencies of target PAF [ 3%] Generating hinge.1 cd /<>/obj-aarch64-linux-gnu/bin && /usr/bin/pandoc --from markdown --to man -s /<>/src/hinge.1.md -o hinge.1 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 6%] Building C object bin/lib/CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o -c /<>/src/lib/kmer_lookup.c [ 10%] Building C object bin/lib/CMakeFiles/DW_banded.dir/DW_banded.c.o [ 13%] Building C object bin/lib/CMakeFiles/PAF.dir/paf.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DW_banded.dir/DW_banded.c.o -c /<>/src/lib/DW_banded.c cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/PAF.dir/paf.c.o -c /<>/src/lib/paf.c make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 13%] Built target man make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu 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Leaving directory '/<>/obj-aarch64-linux-gnu' [ 24%] Linking C static library libDW_banded.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DW_banded.dir/cmake_clean_target.cmake [ 24%] Built target PAF [ 27%] Building CXX object bin/lib/CMakeFiles/ini.dir/INIReader.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/ini.dir/INIReader.cpp.o -c /<>/src/lib/INIReader.cpp cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DW_banded.dir/link.txt --verbose=1 make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= /usr/bin/ar qc libDW_banded.a CMakeFiles/DW_banded.dir/DW_banded.c.o /usr/bin/ranlib libDW_banded.a Scanning dependencies of target LA make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 27%] Built target DW_banded make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= [ 31%] Building C object bin/lib/CMakeFiles/LA.dir/align.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/LA.dir/align.c.o -c /<>/src/lib/align.c Scanning dependencies of target DB make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 34%] Building C object bin/lib/CMakeFiles/DB.dir/DB.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/DB.c.o -c /<>/src/lib/DB.c /<>/src/lib/DB.c: In function ‘Load_QVs’: /<>/src/lib/DB.c:916:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] fscanf(istub,DB_NFILE,&nfiles); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/lib/DB.c:920:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/lib/DB.c:925:13: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result] { fscanf(istub,DB_FDATA,&last,fname,prolog); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 37%] Linking C static library libkmer_lookup.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/kmer_lookup.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/kmer_lookup.dir/link.txt --verbose=1 /usr/bin/ar qc libkmer_lookup.a CMakeFiles/kmer_lookup.dir/kmer_lookup.c.o /usr/bin/ranlib libkmer_lookup.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 37%] Built target kmer_lookup make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= Scanning dependencies of target falcon make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 41%] Building C object bin/lib/CMakeFiles/falcon.dir/falcon.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/falcon.dir/falcon.c.o -c /<>/src/lib/falcon.c [ 44%] Linking C static library libfalcon.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/falcon.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/falcon.dir/link.txt --verbose=1 /usr/bin/ar qc libfalcon.a CMakeFiles/falcon.dir/falcon.c.o /usr/bin/ranlib libfalcon.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 44%] Built target falcon [ 48%] Building C object bin/lib/CMakeFiles/DB.dir/QV.c.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cc -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/DB.dir/QV.c.o -c /<>/src/lib/QV.c [ 51%] Linking C static library libDB.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/DB.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/DB.dir/link.txt --verbose=1 [ 55%] Linking CXX static library libini.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/ini.dir/cmake_clean_target.cmake /usr/bin/ar qc libDB.a CMakeFiles/DB.dir/DB.c.o CMakeFiles/DB.dir/QV.c.o /usr/bin/ranlib libDB.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/ini.dir/link.txt --verbose=1 make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/ar qc libini.a CMakeFiles/ini.dir/ini.c.o CMakeFiles/ini.dir/INIReader.cpp.o /usr/bin/ranlib libini.a [ 55%] Built target DB make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 55%] Built target ini [ 58%] Linking C static library libLA.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LA.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LA.dir/link.txt --verbose=1 /usr/bin/ar qc libLA.a CMakeFiles/LA.dir/align.c.o /usr/bin/ranlib libLA.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 58%] Built target LA make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= Scanning dependencies of target LAInterface make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 62%] Building CXX object bin/lib/CMakeFiles/LAInterface.dir/LAInterface.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/LAInterface.dir/LAInterface.cpp.o -c /<>/src/lib/LAInterface.cpp /<>/src/lib/LAInterface.cpp: In member function ‘void LAInterface::getOverlapw(std::vector&, int, int)’: /<>/src/lib/LAInterface.cpp:1666:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘int64’ {aka ‘long long int’} [-Wformat=] printf("%d percent finished\n", j/(novl/100)); ^~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~ [ 65%] Linking CXX static library libLAInterface.a cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -P CMakeFiles/LAInterface.dir/cmake_clean_target.cmake cd /<>/obj-aarch64-linux-gnu/bin/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/LAInterface.dir/link.txt --verbose=1 /usr/bin/ar qc libLAInterface.a CMakeFiles/LAInterface.dir/LAInterface.cpp.o /usr/bin/ranlib libLAInterface.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/filter /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/filter /<>/obj-aarch64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/maximal /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/maximal /<>/obj-aarch64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-aarch64-linux-gnu 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dependencies of target draft_assembly make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build Scanning dependencies of target Reads_filter make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build [ 68%] Building CXX object bin/consensus/CMakeFiles/consensus.dir/consensus.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/consensus && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/consensus.dir/consensus.cpp.o -c /<>/src/consensus/consensus.cpp make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 72%] Building CXX object bin/maximal/CMakeFiles/get_maximal_reads.dir/maximal.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/maximal && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -c /<>/src/maximal/maximal.cpp [ 75%] Building CXX object bin/consensus/CMakeFiles/draft_assembly.dir/draft.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/consensus && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/draft_assembly.dir/draft.cpp.o -c /<>/src/consensus/draft.cpp [ 79%] Building CXX object bin/filter/CMakeFiles/Reads_filter.dir/filter.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/filter && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/Reads_filter.dir/filter.cpp.o -c /<>/src/filter/filter.cpp [ 82%] Linking CXX executable consensus cd /<>/obj-aarch64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/consensus.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/consensus.dir/consensus.cpp.o -o consensus ../lib/libLAInterface.a ../lib/libfalcon.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 82%] Built target consensus make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/layout /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/layout /<>/obj-aarch64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= Scanning dependencies of target hinging make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' [ 86%] Building CXX object bin/layout/CMakeFiles/hinging.dir/hinging.cpp.o cd /<>/obj-aarch64-linux-gnu/bin/layout && /usr/bin/c++ -I/<>/src/include -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -o CMakeFiles/hinging.dir/hinging.cpp.o -c /<>/src/layout/hinging.cpp [ 89%] Linking CXX executable get_maximal_reads cd /<>/obj-aarch64-linux-gnu/bin/maximal && /usr/bin/cmake -E cmake_link_script CMakeFiles/get_maximal_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/get_maximal_reads.dir/maximal.cpp.o -o get_maximal_reads ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 89%] Built target get_maximal_reads [ 93%] Linking CXX executable Reads_filter cd /<>/obj-aarch64-linux-gnu/bin/filter && /usr/bin/cmake -E cmake_link_script CMakeFiles/Reads_filter.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Reads_filter.dir/filter.cpp.o -o Reads_filter ../lib/libLAInterface.a ../lib/libini.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target Reads_filter [ 96%] Linking CXX executable draft_assembly cd /<>/obj-aarch64-linux-gnu/bin/consensus && /usr/bin/cmake -E cmake_link_script CMakeFiles/draft_assembly.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/draft_assembly.dir/draft.cpp.o -o draft_assembly ../lib/libLAInterface.a ../lib/libini.a ../lib/libfalcon.a ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -lz ../lib/libkmer_lookup.a ../lib/libDW_banded.a make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 96%] Built target draft_assembly [100%] Linking CXX executable hinging cd /<>/obj-aarch64-linux-gnu/bin/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/hinging.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=gnu++11 -fopenmp -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hinging.dir/hinging.cpp.o -o hinging ../lib/libLAInterface.a ../lib/libini.a -Wl,-Bstatic -lboost_graph ../lib/libLA.a ../lib/libDB.a ../lib/libPAF.a -Wl,-Bdynamic -lz make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [100%] Built target hinging make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a cd obj-aarch64-linux-gnu && make -j4 install DESTDIR=/<>/debian/hinge AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles /<>/obj-aarch64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/depend make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin /<>/obj-aarch64-linux-gnu/bin/CMakeFiles/man.dir/DependInfo.cmake --color= make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/depend make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/DW_banded.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/kmer_lookup.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/PAF.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/CMakeFiles/man.dir/build.make bin/CMakeFiles/man.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/CMakeFiles/man.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/DW_banded.dir/build.make bin/lib/CMakeFiles/DW_banded.dir/build make -f bin/lib/CMakeFiles/PAF.dir/build.make bin/lib/CMakeFiles/PAF.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/kmer_lookup.dir/build.make bin/lib/CMakeFiles/kmer_lookup.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DW_banded.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/kmer_lookup.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/PAF.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 3%] Built target man make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/depend [ 10%] Built target DW_banded make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/depend [ 17%] Built target kmer_lookup make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/ini.dir/DependInfo.cmake --color= [ 24%] Built target PAF make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/LA.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/DB.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/falcon.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/ini.dir/build.make bin/lib/CMakeFiles/ini.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/ini.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/LA.dir/build.make bin/lib/CMakeFiles/LA.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/DB.dir/build.make bin/lib/CMakeFiles/DB.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LA.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/falcon.dir/build.make bin/lib/CMakeFiles/falcon.dir/build [ 34%] Built target ini make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/DB.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/falcon.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 41%] Built target LA [ 48%] Built target falcon [ 58%] Built target DB make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/lib /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/lib /<>/obj-aarch64-linux-gnu/bin/lib/CMakeFiles/LAInterface.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/lib/CMakeFiles/LAInterface.dir/build.make bin/lib/CMakeFiles/LAInterface.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/lib/CMakeFiles/LAInterface.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 65%] Built target LAInterface make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/depend make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/depend make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/depend make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/depend make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/maximal /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/maximal /<>/obj-aarch64-linux-gnu/bin/maximal/CMakeFiles/get_maximal_reads.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/filter /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/filter /<>/obj-aarch64-linux-gnu/bin/filter/CMakeFiles/Reads_filter.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/consensus /<>/obj-aarch64-linux-gnu/bin/consensus/CMakeFiles/consensus.dir/DependInfo.cmake --color= make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/consensus /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/consensus /<>/obj-aarch64-linux-gnu/bin/consensus/CMakeFiles/draft_assembly.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/maximal/CMakeFiles/get_maximal_reads.dir/build.make bin/maximal/CMakeFiles/get_maximal_reads.dir/build make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/consensus/CMakeFiles/draft_assembly.dir/build.make bin/consensus/CMakeFiles/draft_assembly.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/draft_assembly.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/maximal/CMakeFiles/get_maximal_reads.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/consensus/CMakeFiles/consensus.dir/build.make bin/consensus/CMakeFiles/consensus.dir/build [ 72%] Built target draft_assembly make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/depend [ 79%] Built target get_maximal_reads make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' cd /<>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/layout /<>/obj-aarch64-linux-gnu /<>/obj-aarch64-linux-gnu/bin/layout /<>/obj-aarch64-linux-gnu/bin/layout/CMakeFiles/hinging.dir/DependInfo.cmake --color= make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/filter/CMakeFiles/Reads_filter.dir/build.make bin/filter/CMakeFiles/Reads_filter.dir/build make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/consensus/CMakeFiles/consensus.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/filter/CMakeFiles/Reads_filter.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' make -f bin/layout/CMakeFiles/hinging.dir/build.make bin/layout/CMakeFiles/hinging.dir/build [ 86%] Built target consensus make[3]: Entering directory '/<>/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'bin/layout/CMakeFiles/hinging.dir/build'. make[3]: Leaving directory '/<>/obj-aarch64-linux-gnu' [ 93%] Built target Reads_filter [100%] Built target hinging make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/hinge/usr/lib/hinge -- Installing: /<>/debian/hinge/usr/lib/hinge/add_groundtruth.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_read.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parallel_draw_large.sh -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_path_norevcomp.py -- Installing: /<>/debian/hinge/usr/lib/hinge/merge_hinges.py -- Installing: /<>/debian/hinge/usr/lib/hinge/interface_utils.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly_not_perfect.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_nctc.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_with_gt.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_annotate_clip_ends.py -- Installing: /<>/debian/hinge/usr/lib/hinge/fasta_to_fastq.py -- Installing: /<>/debian/hinge/usr/lib/hinge/connected.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pileup.ipynb -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping2.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parallel_draw.sh -- Installing: /<>/debian/hinge/usr/lib/hinge/create_bandage_file.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_consensus.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup_w_repeat.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_mapping3.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse.py -- Installing: /<>/debian/hinge/usr/lib/hinge/create_hgraph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_path.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pipeline_consensus_norevcomp.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_qv.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_parse_alignment.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw_pileup_region_find_bridges.py -- Installing: /<>/debian/hinge/usr/lib/hinge/longest_path.py -- Installing: /<>/debian/hinge/usr/lib/hinge/create_hgraph_nogt.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_consensus_gfa.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pruning_and_clipping_nanopore.py -- Installing: /<>/debian/hinge/usr/lib/hinge/split_las.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup_region.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_single_strand.py -- Installing: /<>/debian/hinge/usr/lib/hinge/parse_alignment.py -- Installing: /<>/debian/hinge/usr/lib/hinge/unitig.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_NCTC_json.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw2_pileup.py -- Installing: /<>/debian/hinge/usr/lib/hinge/add_groundtruth_json.py -- Installing: /<>/debian/hinge/usr/lib/hinge/pruning_and_clipping.py -- Installing: /<>/debian/hinge/usr/lib/hinge/Visualise_graph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/correct_head.py -- Installing: /<>/debian/hinge/usr/lib/hinge/repeat_annotate_reads.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph.py -- Installing: /<>/debian/hinge/usr/lib/hinge/random_condensation.py -- Installing: /<>/debian/hinge/usr/lib/hinge/get_draft_annotation.py -- Installing: /<>/debian/hinge/usr/lib/hinge/download_NCTC_pipeline.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_create_gfa_compute_n50.py -- Installing: /<>/debian/hinge/usr/lib/hinge/clip_ends.py -- Installing: /<>/debian/hinge/usr/lib/hinge/compute_n50_from_draft.py -- Installing: /<>/debian/hinge/usr/lib/hinge/draw_pileup_region.py -- Installing: /<>/debian/hinge/usr/lib/hinge/condense_graph_and_annotate.py -- Installing: /<>/debian/hinge/usr/lib/hinge/run_parse_read.py -- Installing: /<>/debian/hinge/usr/share/man/man1/hinge.1 -- Installing: /<>/debian/hinge/usr/bin/hinge -- Installing: /<>/debian/hinge/usr/lib/hinge/Reads_filter -- Installing: /<>/debian/hinge/usr/lib/hinge/get_maximal_reads -- Installing: /<>/debian/hinge/usr/lib/hinge/draft_assembly -- Installing: /<>/debian/hinge/usr/lib/hinge/consensus -- Installing: /<>/debian/hinge/usr/lib/hinge/hinging make[1]: Leaving directory '/<>/obj-aarch64-linux-gnu' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples # only install nominal.ini from the utils/ directory, but preserve # the directory structure (since demo scripts expect it) mkdir -p debian/hinge/usr/share/doc/hinge/examples/utils \ && cp utils/nominal.ini debian/hinge/usr/share/doc/hinge/examples/utils make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 143 INFO: pkgstriptranslations version 143 pkgstriptranslations: processing hinge-dbgsym (in debian/.debhelper/hinge/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing hinge (in debian/hinge); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/hinge/dbgsym-root/DEBIAN/control, package hinge-dbgsym, directory debian/.debhelper/hinge/dbgsym-root dpkg-deb: building package 'hinge-dbgsym' in 'debian/.debhelper/scratch-space/build-hinge/hinge-dbgsym_0.5.0-4_arm64.deb'. pkgstripfiles: processing control file: debian/hinge/DEBIAN/control, package hinge, directory debian/hinge pkgstripfiles: Running PNG optimization (using 4 cpus) for package hinge ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hinge' in '../hinge_0.5.0-4_arm64.deb'. Renaming hinge-dbgsym_0.5.0-4_arm64.deb to hinge-dbgsym_0.5.0-4_arm64.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../hinge_0.5.0-4_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20190119-0525 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hinge_0.5.0-4_arm64.changes: ---------------------------- Format: 1.8 Date: Fri, 18 Jan 2019 11:03:09 -0800 Source: hinge Binary: hinge Architecture: arm64 Version: 0.5.0-4 Distribution: disco-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Michael R. Crusoe Description: hinge - long read genome assembler based on hinging Closes: 909763 Changes: hinge (0.5.0-4) unstable; urgency=medium . * Team upload. . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 . [ Michael R. Crusoe ] * Remove trailing whitespace in debian/copyright * Added libspdlog-dev 1:1.3.0 compatibility, Closes: #909763 * Standards-Version: 4.3.0, no changes needed * debhelper 12 Checksums-Sha1: 151210fb566324a708a531c326a1ff56775a85f9 7684752 hinge-dbgsym_0.5.0-4_arm64.ddeb 31c9b50a37f97b4d8795f90f9b1733cc3aa2378b 8847 hinge_0.5.0-4_arm64.buildinfo 38de51ed2433b70a869ab2e01e099d8d95b2604a 393272 hinge_0.5.0-4_arm64.deb Checksums-Sha256: b31b8ca63a742d2ebdbad8f9a7ef842f2200ffc6ee29c4fee9d543f86471e666 7684752 hinge-dbgsym_0.5.0-4_arm64.ddeb 55b2556983676798b9652aa54e2a8fb5a3e78ff524f139e5553dca6986c7de2e 8847 hinge_0.5.0-4_arm64.buildinfo f2eae7f2d2d77de62566fb09ab6ffb86f4f68274e5855ceb92bb0e113dfc7a6d 393272 hinge_0.5.0-4_arm64.deb Files: 4b8c8132e1f48088262e7021f4616ec5 7684752 debug optional hinge-dbgsym_0.5.0-4_arm64.ddeb 8e6fd34383ff4a1a839e0f4fb571ddca 8847 science optional hinge_0.5.0-4_arm64.buildinfo 1fd8e7346a728474e067e34c8c733fe7 393272 science optional hinge_0.5.0-4_arm64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hinge_0.5.0-4_arm64.deb ----------------------- new debian package, version 2.0. size 393272 bytes: control archive=2968 bytes. 1086 bytes, 17 lines control 5202 bytes, 74 lines md5sums Package: hinge Version: 0.5.0-4 Architecture: arm64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2638 Depends: libc6 (>= 2.27), libgcc1 (>= 1:4.5), libgomp1 (>= 4.2.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4), python, daligner, dazzdb, dascrubber, python-numpy, python-ujson, python-configparser, python-colormap, python-pbcore, python-networkx, python-matplotlib Section: science Priority: optional Homepage: https://github.com/HingeAssembler/HINGE Description: long read genome assembler based on hinging HINGE is a genome assembler that seeks to achieve optimal repeat resolution by distinguishing repeats that can be resolved given the data from those that cannot. This is accomplished by adding “hinges” to reads for constructing an overlap graph where only unresolvable repeats are merged. As a result, HINGE combines the error resilience of overlap-based assemblers with repeat-resolution capabilities of de Bruijn graph assemblers. drwxr-xr-x root/root 0 2019-01-18 19:03 ./ drwxr-xr-x root/root 0 2019-01-18 19:03 ./usr/ drwxr-xr-x root/root 0 2019-01-18 19:03 ./usr/bin/ -rwxr-xr-x root/root 840 2017-08-13 23:05 ./usr/bin/hinge drwxr-xr-x root/root 0 2019-01-18 19:03 ./usr/lib/ drwxr-xr-x root/root 0 2019-01-18 19:03 ./usr/lib/hinge/ -rwxr-xr-x root/root 518920 2019-01-18 19:03 ./usr/lib/hinge/Reads_filter -rwxr-xr-x root/root 1717 2017-08-13 23:05 ./usr/lib/hinge/Visualise_graph.py -rwxr-xr-x root/root 1808 2017-08-13 23:05 ./usr/lib/hinge/add_groundtruth.py -rw-r--r-- root/root 1493 2017-08-13 23:05 ./usr/lib/hinge/add_groundtruth_json.py -rw-r--r-- root/root 934 2017-08-13 23:05 ./usr/lib/hinge/clip_ends.py -rw-r--r-- root/root 2611 2017-08-13 23:05 ./usr/lib/hinge/compute_n50_from_draft.py -rwxr-xr-x root/root 5457 2017-08-13 23:05 ./usr/lib/hinge/condense_graph.py 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Architecture: arm64 Build-Space: 135964 Build-Time: 197 Distribution: disco-proposed Host Architecture: arm64 Install-Time: 77 Job: hinge_0.5.0-4.dsc Machine Architecture: arm64 Package: hinge Package-Time: 276 Source-Version: 0.5.0-4 Space: 135964 Status: successful Version: 0.5.0-4 -------------------------------------------------------------------------------- Finished at 20190119-0525 Build needed 00:04:36, 135964k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=disco --arch=arm64 PACKAGEBUILD-16296394 Scanning for processes to kill in build PACKAGEBUILD-16296394