Ubuntu
hisat2 package

hisat2 2.1.0-2nopython3hisat2 source package in Ubuntu

Changelog

hisat2 (2.1.0-2nopython3hisat2) unstable; urgency=medium

  [ Saira Hussain ]
  * Add autopkgtest

  [ Andreas Tille ]
  * Install hisat2_extract_splice_sites.py
  * Recommends: bcftools, samtools

  [ Michael R. Crusoe ]
  * Skip the new python3-hisat2 package while we wait for 2.1.0-3 to go
    through the NEW queue.
  * Include SIMD everywhere headers and enable building on all architectures.
  * debhelper-compat 12
  * Remove trailing whitespace in debian/control
  * Ported Python scripts to Python 3 using 2to3. Closes: #943125

 -- Michael R. Crusoe <email address hidden>  Mon, 30 Dec 2019 20:08:00 +0100

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
hisat2_2.1.0-2nopython3hisat2.dsc 2.0 KiB 4ebe196d7e92d0fa891011add97bd4a9da7eaebfcf15f1d1710635113bf988df
hisat2_2.1.0.orig.tar.xz 2.6 MiB 8e12e932bb64346eb5ae9c4392146622f30e15b7d043efaecdebd0daea60e143
hisat2_2.1.0-2nopython3hisat2.debian.tar.xz 80.8 KiB 34985c2f6297027ce699c2d39e1ec0bf50a685fd2bf4938872fbab1eb6b14e44

Available diffs

No changes file available.

Binary packages built by this source

hisat2: graph-based alignment of short nucleotide reads to many genomes

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

hisat2-dbgsym: debug symbols for hisat2