hisat2 2.1.0-2nopython3hisat3 source package in Ubuntu


hisat2 (2.1.0-2nopython3hisat3) unstable; urgency=medium

  * armhf armel ppc64el s390x: add -Wno-narrowing

 -- Michael R. Crusoe <email address hidden>  Sat, 04 Jan 2020 22:52:02 +0100

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Debian Med
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Debian Med
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File Size SHA-256 Checksum
hisat2_2.1.0-2nopython3hisat3.dsc 2.0 KiB 0373f696d1545e1d174eb6979755620f00d40d716706113ab5bbc390509cd367
hisat2_2.1.0.orig.tar.xz 2.6 MiB 8e12e932bb64346eb5ae9c4392146622f30e15b7d043efaecdebd0daea60e143
hisat2_2.1.0-2nopython3hisat3.debian.tar.xz 80.8 KiB 1c3dc6eadb5fde6c0f735e453cccb27b50d62645605eaac6d15bd512495b22a1

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hisat2: graph-based alignment of short nucleotide reads to many genomes

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

hisat2-dbgsym: debug symbols for hisat2