hisat2 2.2.0-1 source package in Ubuntu

Changelog

hisat2 (2.2.0-1) unstable; urgency=medium

  * Use the libsimde-dev package instead of our code copy.
  * Standards-Version: 4.5.0 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Upstream moved to GitHub
  * Use the HISAT2 citation instead of the HISAT paper
  * New upstream version
  * Freshen the patches
  * Added patch to fix the manual path

 -- Michael R. Crusoe <email address hidden>  Sun, 19 Apr 2020 23:04:26 +0200

Upload details

Uploaded by:
Debian Med
Uploaded to:
Sid
Original maintainer:
Debian Med
Architectures:
any all
Section:
misc
Urgency:
Medium Urgency

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Series Pocket Published Component Section

Downloads

File Size SHA-256 Checksum
hisat2_2.2.0-1.dsc 2.1 KiB 10aa76ba99a6e63eba1ebf4d059e8065a1f07061fb9048cb81224809b1c92890
hisat2_2.2.0.orig.tar.gz 6.5 MiB 429882d90ad9c600a986279b3ca5d78573caacf3bf0d780c802c006d4fcf0a01
hisat2_2.2.0-1.debian.tar.xz 51.5 KiB 72b07bcae89d3d32c363ee88829afb18a02538dcd52d3fa0afda6bd8402243f7

No changes file available.

Binary packages built by this source

hisat2: graph-based alignment of short nucleotide reads to many genomes

 HISAT2 is a fast and sensitive alignment program for mapping next-generation
 sequencing reads (both DNA and RNA) to a population of human genomes (as well
 as against a single reference genome). Based on an extension of BWT for graphs
 a graph FM index (GFM) was designed and implementd. In addition to using
 one global GFM index that represents a population of human genomes, HISAT2
 uses a large set of small GFM indexes that collectively cover the whole genome
 (each index representing a genomic region of 56 Kbp, with 55,000 indexes
 needed to cover the human population). These small indexes (called local
 indexes), combined with several alignment strategies, enable rapid and
 accurate alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).

hisat2-dbgsym: debug symbols for hisat2
python3-hisat2: Python scripts accompanying hisat2

 HISAT2 is a fast and sensitive alignment program for mapping next-
 generation sequencing reads (both DNA and RNA) to a population of human
 genomes (as well as against a single reference genome). Based on an
 extension of BWT for graphs a graph FM index (GFM) was designed and
 implementd. In addition to using one global GFM index that represents a
 population of human genomes, HISAT2 uses a large set of small GFM
 indexes that collectively cover the whole genome (each index
 representing a genomic region of 56 Kbp, with 55,000 indexes needed to
 cover the human population). These small indexes (called local indexes),
 combined with several alignment strategies, enable rapid and accurate
 alignment of sequencing reads. This new indexing scheme is called a
 Hierarchical Graph FM index (HGFM).
 .
 This package provides a serires of platform-independent scripts that are
 typically expected to be co-installed with the hisat2 binary.