RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux tipua 3.2.0-68-generic #102-Ubuntu SMP Tue Aug 12 22:02:15 UTC 2014 x86_64 Buildd toolchain package versions: launchpad-buildd_129 python-lpbuildd_129 bzr_2.5.1-0ubuntu2 dpkg-dev_1.16.1.2ubuntu7.6. Syncing the system clock with the buildd NTP service... 6 Jul 05:12:45 ntpdate[2633]: adjust time server 10.211.37.1 offset -0.000129 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-7623748', '/home/buildd/filecache-default/29a30262335ea1a39771c1615f8eea53dfa537cc'] Unpacking chroot for build PACKAGEBUILD-7623748 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-7623748'] Mounting chroot for build PACKAGEBUILD-7623748 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-7623748', 'deb http://ftpmaster.internal/ubuntu wily main universe', 'deb http://ftpmaster.internal/ubuntu wily-security main universe', 'deb http://ftpmaster.internal/ubuntu wily-updates main universe', 'deb http://ftpmaster.internal/ubuntu wily-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-7623748 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-7623748', 'amd64'] Updating debian chroot for build PACKAGEBUILD-7623748 Ign http://ftpmaster.internal wily InRelease Ign http://ftpmaster.internal wily-security InRelease Ign http://ftpmaster.internal wily-updates InRelease Ign http://ftpmaster.internal wily-proposed InRelease Get:1 http://ftpmaster.internal wily Release.gpg [933 B] Get:2 http://ftpmaster.internal wily-security Release.gpg [933 B] Get:3 http://ftpmaster.internal wily-updates Release.gpg [933 B] Get:4 http://ftpmaster.internal wily-proposed Release.gpg [933 B] Get:5 http://ftpmaster.internal wily Release [217 kB] Ign http://archive-team.internal wily InRelease Ign http://archive-team.internal wily Release.gpg Get:6 http://archive-team.internal wily Release [726 B] Get:7 http://archive-team.internal wily/main amd64 Packages Ign http://archive-team.internal wily/main Translation-en Get:8 http://ftpmaster.internal wily-security Release [63.5 kB] Get:9 http://ftpmaster.internal wily-updates Release [63.5 kB] Get:10 http://ftpmaster.internal wily-proposed Release [217 kB] Get:11 http://ftpmaster.internal wily/main amd64 Packages [1421 kB] Get:12 http://ftpmaster.internal wily/universe amd64 Packages [6629 kB] Get:13 http://ftpmaster.internal wily/main Translation-en [827 kB] Get:14 http://ftpmaster.internal wily/universe Translation-en [4519 kB] Get:15 http://ftpmaster.internal wily-security/main amd64 Packages [28 B] Get:16 http://ftpmaster.internal wily-security/universe amd64 Packages [28 B] Get:17 http://ftpmaster.internal wily-security/main Translation-en [28 B] Get:18 http://ftpmaster.internal wily-security/universe Translation-en [28 B] Get:19 http://ftpmaster.internal wily-updates/main amd64 Packages [28 B] Get:20 http://ftpmaster.internal wily-updates/universe amd64 Packages [28 B] Get:21 http://ftpmaster.internal wily-updates/main Translation-en [28 B] Get:22 http://ftpmaster.internal wily-updates/universe Translation-en [28 B] Get:23 http://ftpmaster.internal wily-proposed/main amd64 Packages [51.6 kB] Get:24 http://ftpmaster.internal wily-proposed/universe amd64 Packages [403 kB] Get:25 http://ftpmaster.internal wily-proposed/main Translation-en [56.3 kB] Get:26 http://ftpmaster.internal wily-proposed/universe Translation-en [214 kB] Fetched 14.7 MB in 5s (2759 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed2 libnettle4 Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: adduser dmsetup init libapparmor1 libcap2-bin libcryptsetup4 libdevmapper1.02.1 libfdisk1 libhogweed4 libkmod2 libnettle6 libseccomp2 systemd systemd-sysv udev The following packages will be upgraded: apt apt-transport-https base-files bash binutils bsdutils bzip2 ca-certificates cpp-4.9 dash debianutils dpkg dpkg-dev g++-4.9 gcc-4.9 gcc-4.9-base gcc-5-base grep initscripts libapt-pkg4.12 libasan1 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libbz2-1.0 libcap2 libcilkrts5 libcloog-isl4 libcurl3-gnutls libdpkg-perl libgcc-4.9-dev libgcc1 libgcrypt20 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libisl13 libitm1 libk5crypto3 libkrb5-26-heimdal libkrb5-3 libkrb5support0 libldap-2.4-2 liblsan0 libmount1 libmpfr4 libncurses5 libncursesw5 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libquadmath0 libroken18-heimdal librtmp1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-4.9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libtsan0 libubsan0 libudev1 libustr-1.0-1 libuuid1 libwind0-heimdal linux-libc-dev login mount ncurses-base ncurses-bin openssl passwd patch perl perl-base perl-modules pkg-create-dbgsym sysv-rc sysvinit-utils tzdata util-linux 94 upgraded, 15 newly installed, 0 to remove and 0 not upgraded. Need to get 63.2 MB of archives. After this operation, 33.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ wily/main base-files amd64 7.2ubuntu10 [68.2 kB] Get:2 http://ftpmaster.internal/ubuntu/ wily/main debianutils amd64 4.5.1 [85.0 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main bash amd64 4.3-11ubuntu3 [582 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main bsdutils amd64 1:2.26.2-6ubuntu1 [50.9 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main dpkg amd64 1.17.25ubuntu1 [2220 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main dash amd64 0.5.7-4ubuntu2 [87.0 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main grep amd64 2.21-2 [149 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libapparmor1 amd64 2.9.2-0ubuntu1 [25.2 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main sysv-rc all 2.88dsf-59.2ubuntu1 [36.9 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main sysvinit-utils amd64 2.88dsf-59.2ubuntu1 [26.3 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libfdisk1 amd64 2.26.2-6ubuntu1 [137 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main initscripts amd64 2.88dsf-59.2ubuntu1 [25.4 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main util-linux amd64 2.26.2-6ubuntu1 [781 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main mount amd64 2.26.2-6ubuntu1 [123 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main libaudit-common all 1:2.3.7-1ubuntu2 [4176 B] Get:16 http://ftpmaster.internal/ubuntu/ wily/main libaudit1 amd64 1:2.3.7-1ubuntu2 [34.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main libpam0g amd64 1.1.8-3.1ubuntu3 [58.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules-bin amd64 1.1.8-3.1ubuntu3 [36.6 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main libpam-modules amd64 1.1.8-3.1ubuntu3 [245 kB] Get:20 http://ftpmaster.internal/ubuntu/ wily/main passwd amd64 1:4.1.5.1-1.1ubuntu6 [764 kB] Get:21 http://ftpmaster.internal/ubuntu/ wily/main libuuid1 amd64 2.26.2-6ubuntu1 [16.2 kB] Get:22 http://ftpmaster.internal/ubuntu/ wily/main libblkid1 amd64 2.26.2-6ubuntu1 [108 kB] Get:23 http://ftpmaster.internal/ubuntu/ wily/main tzdata all 2015e-1 [183 kB] Get:24 http://ftpmaster.internal/ubuntu/ wily/main libdevmapper1.02.1 amd64 2:1.02.90-2ubuntu1 [118 kB] Get:25 http://ftpmaster.internal/ubuntu/ wily/main dmsetup amd64 2:1.02.90-2ubuntu1 [40.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ wily/main libudev1 amd64 221-1ubuntu2 [57.7 kB] Get:27 http://ftpmaster.internal/ubuntu/ wily/main libgpg-error0 amd64 1.19-2 [33.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ wily/main libgcrypt20 amd64 1.6.3-2ubuntu1 [335 kB] Get:29 http://ftpmaster.internal/ubuntu/ wily/main libcryptsetup4 amd64 2:1.6.1-1ubuntu7 [68.1 kB] Get:30 http://ftpmaster.internal/ubuntu/ wily/main libkmod2 amd64 18-3ubuntu1 [39.7 kB] Get:31 http://ftpmaster.internal/ubuntu/ wily/main libseccomp2 amd64 2.2.1-2ubuntu1 [31.8 kB] Get:32 http://ftpmaster.internal/ubuntu/ wily/main libsystemd0 amd64 221-1ubuntu2 [199 kB] Get:33 http://ftpmaster.internal/ubuntu/ wily/main perl amd64 5.20.2-6 [2617 kB] Get:34 http://ftpmaster.internal/ubuntu/ wily/main perl-base amd64 5.20.2-6 [1212 kB] Get:35 http://ftpmaster.internal/ubuntu/ wily/main perl-modules all 5.20.2-6 [2501 kB] Get:36 http://ftpmaster.internal/ubuntu/ wily/main bzip2 amd64 1.0.6-8 [32.7 kB] Get:37 http://ftpmaster.internal/ubuntu/ wily/main libbz2-1.0 amd64 1.0.6-8 [30.8 kB] Get:38 http://ftpmaster.internal/ubuntu/ wily-proposed/main adduser all 3.113+nmu3ubuntu4 [162 kB] Get:39 http://ftpmaster.internal/ubuntu/ wily/main udev amd64 221-1ubuntu2 [987 kB] Get:40 http://ftpmaster.internal/ubuntu/ wily/main libcap2 amd64 1:2.24-9 [12.8 kB] Get:41 http://ftpmaster.internal/ubuntu/ wily/main libcap2-bin amd64 1:2.24-9 [20.3 kB] Get:42 http://ftpmaster.internal/ubuntu/ wily/main libmount1 amd64 2.26.2-6ubuntu1 [116 kB] Get:43 http://ftpmaster.internal/ubuntu/ wily/main systemd amd64 221-1ubuntu2 [3717 kB] Get:44 http://ftpmaster.internal/ubuntu/ wily/main systemd-sysv amd64 221-1ubuntu2 [15.9 kB] Get:45 http://ftpmaster.internal/ubuntu/ wily/main init amd64 1.23ubuntu3 [4106 B] Get:46 http://ftpmaster.internal/ubuntu/ wily/main login amd64 1:4.1.5.1-1.1ubuntu6 [302 kB] Get:47 http://ftpmaster.internal/ubuntu/ wily-proposed/main ncurses-bin amd64 5.9+20150516-2ubuntu1 [139 kB] Get:48 http://ftpmaster.internal/ubuntu/ wily/main gcc-5-base amd64 5.1.1-12ubuntu1 [16.7 kB] Get:49 http://ftpmaster.internal/ubuntu/ wily/main libgcc1 amd64 1:5.1.1-12ubuntu1 [39.1 kB] Get:50 http://ftpmaster.internal/ubuntu/ wily/main libstdc++6 amd64 5.1.1-12ubuntu1 [304 kB] Get:51 http://ftpmaster.internal/ubuntu/ wily/main libapt-pkg4.12 amd64 1.0.9.10ubuntu1 [682 kB] Get:52 http://ftpmaster.internal/ubuntu/ wily/main apt amd64 1.0.9.10ubuntu1 [1006 kB] Get:53 http://ftpmaster.internal/ubuntu/ wily-proposed/main ncurses-base all 5.9+20150516-2ubuntu1 [16.3 kB] Get:54 http://ftpmaster.internal/ubuntu/ wily/main libp11-kit0 amd64 0.23.1-2 [107 kB] Get:55 http://ftpmaster.internal/ubuntu/ wily/main libroken18-heimdal amd64 1.6~rc2+dfsg-10 [40.9 kB] Get:56 http://ftpmaster.internal/ubuntu/ wily/main libasn1-8-heimdal amd64 1.6~rc2+dfsg-10 [177 kB] Get:57 http://ftpmaster.internal/ubuntu/ wily/main libhcrypto4-heimdal amd64 1.6~rc2+dfsg-10 [86.0 kB] Get:58 http://ftpmaster.internal/ubuntu/ wily/main libheimbase1-heimdal amd64 1.6~rc2+dfsg-10 [29.7 kB] Get:59 http://ftpmaster.internal/ubuntu/ wily/main libwind0-heimdal amd64 1.6~rc2+dfsg-10 [48.4 kB] Get:60 http://ftpmaster.internal/ubuntu/ wily/main libhx509-5-heimdal amd64 1.6~rc2+dfsg-10 [107 kB] Get:61 http://ftpmaster.internal/ubuntu/ wily/main libsqlite3-0 amd64 3.8.10.2-1 [379 kB] Get:62 http://ftpmaster.internal/ubuntu/ wily/main libkrb5-26-heimdal amd64 1.6~rc2+dfsg-10 [203 kB] Get:63 http://ftpmaster.internal/ubuntu/ wily/main libheimntlm0-heimdal amd64 1.6~rc2+dfsg-10 [15.2 kB] Get:64 http://ftpmaster.internal/ubuntu/ wily/main libgssapi3-heimdal amd64 1.6~rc2+dfsg-10 [94.5 kB] Get:65 http://ftpmaster.internal/ubuntu/ wily/main libnettle6 amd64 3.1.1-3 [93.5 kB] Get:66 http://ftpmaster.internal/ubuntu/ wily/main libhogweed4 amd64 3.1.1-3 [135 kB] Get:67 http://ftpmaster.internal/ubuntu/ wily/main libtasn1-6 amd64 4.5-2 [42.7 kB] Get:68 http://ftpmaster.internal/ubuntu/ wily/main libgnutls-deb0-28 amd64 3.3.15-5ubuntu1 [522 kB] Get:69 http://ftpmaster.internal/ubuntu/ wily/main libldap-2.4-2 amd64 2.4.40+dfsg-1ubuntu2 [159 kB] Get:70 http://ftpmaster.internal/ubuntu/ wily/main libisl13 amd64 0.14-2 [456 kB] Get:71 http://ftpmaster.internal/ubuntu/ wily/main libcloog-isl4 amd64 0.18.3-1 [60.8 kB] Get:72 http://ftpmaster.internal/ubuntu/ wily/main libmpfr4 amd64 3.1.3-1 [190 kB] Get:73 http://ftpmaster.internal/ubuntu/ wily-proposed/main g++-4.9 amd64 4.9.3-1ubuntu1 [17.6 MB] Get:74 http://ftpmaster.internal/ubuntu/ wily-proposed/main gcc-4.9 amd64 4.9.3-1ubuntu1 [5654 kB] Get:75 http://ftpmaster.internal/ubuntu/ wily-proposed/main cpp-4.9 amd64 4.9.3-1ubuntu1 [5033 kB] Get:76 http://ftpmaster.internal/ubuntu/ wily/main binutils amd64 2.25-9ubuntu1 [2222 kB] Get:77 http://ftpmaster.internal/ubuntu/ wily/main libgomp1 amd64 5.1.1-12ubuntu1 [55.4 kB] Get:78 http://ftpmaster.internal/ubuntu/ wily/main libitm1 amd64 5.1.1-12ubuntu1 [27.6 kB] Get:79 http://ftpmaster.internal/ubuntu/ wily/main libatomic1 amd64 5.1.1-12ubuntu1 [9188 B] Get:80 http://ftpmaster.internal/ubuntu/ wily/main liblsan0 amd64 5.1.1-12ubuntu1 [110 kB] Get:81 http://ftpmaster.internal/ubuntu/ wily/main libtsan0 amd64 5.1.1-12ubuntu1 [251 kB] Get:82 http://ftpmaster.internal/ubuntu/ wily/main libubsan0 amd64 5.1.1-12ubuntu1 [101 kB] Get:83 http://ftpmaster.internal/ubuntu/ wily/main libcilkrts5 amd64 5.1.1-12ubuntu1 [40.5 kB] Get:84 http://ftpmaster.internal/ubuntu/ wily/main libquadmath0 amd64 5.1.1-12ubuntu1 [131 kB] Get:85 http://ftpmaster.internal/ubuntu/ wily-proposed/main libstdc++-4.9-dev amd64 4.9.3-1ubuntu1 [1130 kB] Get:86 http://ftpmaster.internal/ubuntu/ wily-proposed/main libgcc-4.9-dev amd64 4.9.3-1ubuntu1 [2074 kB] Get:87 http://ftpmaster.internal/ubuntu/ wily-proposed/main libasan1 amd64 4.9.3-1ubuntu1 [199 kB] Get:88 http://ftpmaster.internal/ubuntu/ wily-proposed/main gcc-4.9-base amd64 4.9.3-1ubuntu1 [15.2 kB] Get:89 http://ftpmaster.internal/ubuntu/ wily-proposed/main libtinfo5 amd64 5.9+20150516-2ubuntu1 [76.1 kB] Get:90 http://ftpmaster.internal/ubuntu/ wily-proposed/main libncurses5 amd64 5.9+20150516-2ubuntu1 [96.1 kB] Get:91 http://ftpmaster.internal/ubuntu/ wily-proposed/main libncursesw5 amd64 5.9+20150516-2ubuntu1 [122 kB] Get:92 http://ftpmaster.internal/ubuntu/ wily/main libpam-runtime all 1.1.8-3.1ubuntu3 [39.8 kB] Get:93 http://ftpmaster.internal/ubuntu/ wily/main libsmartcols1 amd64 2.26.2-6ubuntu1 [63.9 kB] Get:94 http://ftpmaster.internal/ubuntu/ wily/main libustr-1.0-1 amd64 1.0.4-5 [68.4 kB] Get:95 http://ftpmaster.internal/ubuntu/ wily/main libssl1.0.0 amd64 1.0.2c-1ubuntu1 [1092 kB] Get:96 http://ftpmaster.internal/ubuntu/ wily/main libgssapi-krb5-2 amd64 1.13.2+dfsg-2 [119 kB] Get:97 http://ftpmaster.internal/ubuntu/ wily/main libkrb5-3 amd64 1.13.2+dfsg-2 [275 kB] Get:98 http://ftpmaster.internal/ubuntu/ wily/main libk5crypto3 amd64 1.13.2+dfsg-2 [83.5 kB] Get:99 http://ftpmaster.internal/ubuntu/ wily/main libkrb5support0 amd64 1.13.2+dfsg-2 [30.5 kB] Get:100 http://ftpmaster.internal/ubuntu/ wily/main librtmp1 amd64 2.4+20150115.gita107cef-1build1 [54.7 kB] Get:101 http://ftpmaster.internal/ubuntu/ wily/main libcurl3-gnutls amd64 7.43.0-1ubuntu1 [182 kB] Get:102 http://ftpmaster.internal/ubuntu/ wily/main apt-transport-https amd64 1.0.9.10ubuntu1 [28.1 kB] Get:103 http://ftpmaster.internal/ubuntu/ wily/main openssl amd64 1.0.2c-1ubuntu1 [512 kB] Get:104 http://ftpmaster.internal/ubuntu/ wily/main ca-certificates all 20150426 [200 kB] Get:105 http://ftpmaster.internal/ubuntu/ wily/main dpkg-dev all 1.17.25ubuntu1 [762 kB] Get:106 http://ftpmaster.internal/ubuntu/ wily/main libdpkg-perl all 1.17.25ubuntu1 [194 kB] Get:107 http://ftpmaster.internal/ubuntu/ wily/main patch amd64 2.7.5-1 [90.4 kB] Get:108 http://ftpmaster.internal/ubuntu/ wily/main linux-libc-dev amd64 3.19.0-22.22 [801 kB] Get:109 http://ftpmaster.internal/ubuntu/ wily/main pkg-create-dbgsym all 0.69 [9026 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 63.2 MB in 3s (17.6 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10737 files and directories currently installed.) Preparing to unpack .../base-files_7.2ubuntu10_amd64.deb ... Unpacking base-files (7.2ubuntu10) over (7.2ubuntu8) ... Setting up base-files (7.2ubuntu10) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Installing new version of config file /etc/os-release ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10742 files and directories currently installed.) Preparing to unpack .../sysv-rc_2.88dsf-59.2ubuntu1_all.deb ... Unpacking sysv-rc (2.88dsf-59.2ubuntu1) over (2.88dsf-53.2ubuntu11) ... Setting up sysv-rc (2.88dsf-59.2ubuntu1) ... Selecting previously unselected package libfdisk1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10742 files and directories currently installed.) Preparing to unpack .../libfdisk1_2.26.2-6ubuntu1_amd64.deb ... Unpacking libfdisk1:amd64 (2.26.2-6ubuntu1) ... Setting up libfdisk1:amd64 (2.26.2-6ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10747 files and directories currently installed.) Preparing to unpack .../util-linux_2.26.2-6ubuntu1_amd64.deb ... Unpacking util-linux (2.26.2-6ubuntu1) over (2.25.2-4ubuntu2) ... Replacing files in old package initscripts (2.88dsf-53.2ubuntu11) ... Replacing files in old package sysvinit-utils (2.88dsf-53.2ubuntu11) ... Preparing to unpack .../sysvinit-utils_2.88dsf-59.2ubuntu1_amd64.deb ... Unpacking sysvinit-utils (2.88dsf-59.2ubuntu1) over (2.88dsf-53.2ubuntu11) ... Setting up sysvinit-utils (2.88dsf-59.2ubuntu1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10754 files and directories currently installed.) Preparing to unpack .../initscripts_2.88dsf-59.2ubuntu1_amd64.deb ... Unpacking initscripts (2.88dsf-59.2ubuntu1) over (2.88dsf-53.2ubuntu11) ... dpkg: warning: unable to delete old directory '/etc/network': Directory not empty Setting up initscripts (2.88dsf-59.2ubuntu1) ... Installing new version of config file /etc/init.d/bootmisc.sh ... Installing new version of config file /etc/init.d/checkfs.sh ... Installing new version of config file /etc/init.d/checkroot.sh ... Installing new version of config file /etc/init.d/checkroot-bootclean.sh ... Installing new version of config file /etc/init.d/halt ... Installing new version of config file /etc/init.d/killprocs ... Installing new version of config file /etc/init.d/mountall.sh ... Installing new version of config file /etc/init.d/mountall-bootclean.sh ... Installing new version of config file /etc/init.d/mountnfs.sh ... Installing new version of config file /etc/init.d/mountnfs-bootclean.sh ... Installing new version of config file /etc/init.d/mountdevsubfs.sh ... Installing new version of config file /etc/init.d/mountkernfs.sh ... Installing new version of config file /etc/init.d/rc.local ... Installing new version of config file /etc/init.d/reboot ... Installing new version of config file /etc/init.d/sendsigs ... Installing new version of config file /etc/init.d/single ... Installing new version of config file /etc/init.d/umountfs ... Installing new version of config file /etc/init.d/umountnfs.sh ... Installing new version of config file /etc/init.d/umountroot ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a2.3.7-1ubuntu2_all.deb ... Unpacking libaudit-common (1:2.3.7-1ubuntu2) over (1:2.3.7-1ubuntu1) ... Setting up libaudit-common (1:2.3.7-1ubuntu2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a2.3.7-1ubuntu2_amd64.deb ... Unpacking libaudit1:amd64 (1:2.3.7-1ubuntu2) over (1:2.3.7-1ubuntu1) ... Setting up libaudit1:amd64 (1:2.3.7-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-3.1ubuntu3_amd64.deb ... Unpacking libpam0g:amd64 (1.1.8-3.1ubuntu3) over (1.1.8-3.1ubuntu2) ... Setting up libpam0g:amd64 (1.1.8-3.1ubuntu3) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-3.1ubuntu3_amd64.deb ... Unpacking libpam-modules-bin (1.1.8-3.1ubuntu3) over (1.1.8-3.1ubuntu2) ... Setting up libpam-modules-bin (1.1.8-3.1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-3.1ubuntu3_amd64.deb ... Unpacking libpam-modules:amd64 (1.1.8-3.1ubuntu3) over (1.1.8-3.1ubuntu2) ... Setting up libpam-modules:amd64 (1.1.8-3.1ubuntu3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../passwd_1%3a4.1.5.1-1.1ubuntu6_amd64.deb ... Unpacking passwd (1:4.1.5.1-1.1ubuntu6) over (1:4.1.5.1-1.1ubuntu3) ... Setting up passwd (1:4.1.5.1-1.1ubuntu6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libuuid1_2.26.2-6ubuntu1_amd64.deb ... Unpacking libuuid1:amd64 (2.26.2-6ubuntu1) over (2.25.2-4ubuntu2) ... Setting up libuuid1:amd64 (2.26.2-6ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../libblkid1_2.26.2-6ubuntu1_amd64.deb ... Unpacking libblkid1:amd64 (2.26.2-6ubuntu1) over (2.25.2-4ubuntu2) ... Setting up libblkid1:amd64 (2.26.2-6ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10753 files and directories currently installed.) Preparing to unpack .../tzdata_2015e-1_all.deb ... Unpacking tzdata (2015e-1) over (2015b-1) ... Setting up tzdata (2015e-1) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Jul 6 05:13:04 UTC 2015. Universal Time is now: Mon Jul 6 05:13:04 UTC 2015. Run 'dpkg-reconfigure tzdata' if you wish to change it. Selecting previously unselected package libdevmapper1.02.1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10755 files and directories currently installed.) Preparing to unpack .../libdevmapper1.02.1_2%3a1.02.90-2ubuntu1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.90-2ubuntu1) ... Selecting previously unselected package dmsetup. Preparing to unpack .../dmsetup_2%3a1.02.90-2ubuntu1_amd64.deb ... Unpacking dmsetup (2:1.02.90-2ubuntu1) ... Setting up util-linux (2.26.2-6ubuntu1) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.90-2ubuntu1) ... Setting up dmsetup (2:1.02.90-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10769 files and directories currently installed.) Preparing to unpack .../libudev1_221-1ubuntu2_amd64.deb ... Unpacking libudev1:amd64 (221-1ubuntu2) over (219-6ubuntu1) ... Setting up libudev1:amd64 (221-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10769 files and directories currently installed.) Preparing to unpack .../libgpg-error0_1.19-2_amd64.deb ... Unpacking libgpg-error0:amd64 (1.19-2) over (1.17-3ubuntu1) ... Setting up libgpg-error0:amd64 (1.19-2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10769 files and directories currently installed.) Preparing to unpack .../libgcrypt20_1.6.3-2ubuntu1_amd64.deb ... Unpacking libgcrypt20:amd64 (1.6.3-2ubuntu1) over (1.6.2-4ubuntu2) ... Setting up libgcrypt20:amd64 (1.6.3-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libcryptsetup4. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10769 files and directories currently installed.) Preparing to unpack .../libcryptsetup4_2%3a1.6.1-1ubuntu7_amd64.deb ... Unpacking libcryptsetup4 (2:1.6.1-1ubuntu7) ... Setting up libcryptsetup4 (2:1.6.1-1ubuntu7) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libkmod2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10775 files and directories currently installed.) Preparing to unpack .../libkmod2_18-3ubuntu1_amd64.deb ... Unpacking libkmod2:amd64 (18-3ubuntu1) ... Setting up libkmod2:amd64 (18-3ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libseccomp2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10780 files and directories currently installed.) Preparing to unpack .../libseccomp2_2.2.1-2ubuntu1_amd64.deb ... Unpacking libseccomp2:amd64 (2.2.1-2ubuntu1) ... Setting up libseccomp2:amd64 (2.2.1-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10785 files and directories currently installed.) Preparing to unpack .../libsystemd0_221-1ubuntu2_amd64.deb ... Unpacking libsystemd0:amd64 (221-1ubuntu2) over (219-6ubuntu1) ... Setting up libsystemd0:amd64 (221-1ubuntu2) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10785 files and directories currently installed.) Preparing to unpack .../perl_5.20.2-6_amd64.deb ... Unpacking perl (5.20.2-6) over (5.20.2-2) ... Preparing to unpack .../perl-base_5.20.2-6_amd64.deb ... Unpacking perl-base (5.20.2-6) over (5.20.2-2) ... Setting up perl-base (5.20.2-6) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10783 files and directories currently installed.) Preparing to unpack .../perl-modules_5.20.2-6_all.deb ... Unpacking perl-modules (5.20.2-6) over (5.20.2-2) ... Preparing to unpack .../bzip2_1.0.6-8_amd64.deb ... Unpacking bzip2 (1.0.6-8) over (1.0.6-7) ... Preparing to unpack .../libbz2-1.0_1.0.6-8_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.6-8) over (1.0.6-7) ... Setting up libbz2-1.0:amd64 (1.0.6-8) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package adduser. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10783 files and directories currently installed.) Preparing to unpack .../adduser_3.113+nmu3ubuntu4_all.deb ... Unpacking adduser (3.113+nmu3ubuntu4) ... Setting up adduser (3.113+nmu3ubuntu4) ... Selecting previously unselected package udev. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10872 files and directories currently installed.) Preparing to unpack .../udev_221-1ubuntu2_amd64.deb ... Unpacking udev (221-1ubuntu2) ... Setting up udev (221-1ubuntu2) ... A chroot environment has been detected, udev not started. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10992 files and directories currently installed.) Preparing to unpack .../libcap2_1%3a2.24-9_amd64.deb ... Unpacking libcap2:amd64 (1:2.24-9) over (1:2.24-6) ... Setting up libcap2:amd64 (1:2.24-9) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package libcap2-bin. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10992 files and directories currently installed.) Preparing to unpack .../libcap2-bin_1%3a2.24-9_amd64.deb ... Unpacking libcap2-bin (1:2.24-9) ... Setting up libcap2-bin (1:2.24-9) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11006 files and directories currently installed.) Preparing to unpack .../libmount1_2.26.2-6ubuntu1_amd64.deb ... Unpacking libmount1:amd64 (2.26.2-6ubuntu1) over (2.25.2-4ubuntu2) ... Setting up libmount1:amd64 (2.26.2-6ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Selecting previously unselected package systemd. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11006 files and directories currently installed.) Preparing to unpack .../systemd_221-1ubuntu2_amd64.deb ... Unpacking systemd (221-1ubuntu2) ... Setting up systemd (221-1ubuntu2) ... Created symlink from /etc/systemd/system/getty.target.wants/getty@tty1.service to /lib/systemd/system/getty@.service. Created symlink from /etc/systemd/system/multi-user.target.wants/remote-fs.target to /lib/systemd/system/remote-fs.target. 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Preparing to unpack .../ca-certificates_20150426_all.deb ... Unpacking ca-certificates (20150426) over (20141019) ... Preparing to unpack .../dpkg-dev_1.17.25ubuntu1_all.deb ... Unpacking dpkg-dev (1.17.25ubuntu1) over (1.17.24ubuntu1) ... Preparing to unpack .../libdpkg-perl_1.17.25ubuntu1_all.deb ... Unpacking libdpkg-perl (1.17.25ubuntu1) over (1.17.24ubuntu1) ... Preparing to unpack .../patch_2.7.5-1_amd64.deb ... Unpacking patch (2.7.5-1) over (2.7.4-2) ... Preparing to unpack .../linux-libc-dev_3.19.0-22.22_amd64.deb ... Unpacking linux-libc-dev:amd64 (3.19.0-22.22) over (3.19.0-11.11) ... Preparing to unpack .../pkg-create-dbgsym_0.69_all.deb ... Unpacking pkg-create-dbgsym (0.69) over (0.65) ... Setting up perl-modules (5.20.2-6) ... Setting up perl (5.20.2-6) ... Setting up bzip2 (1.0.6-8) ... Setting up libp11-kit0:amd64 (0.23.1-2) ... Setting up libroken18-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libasn1-8-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libhcrypto4-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libheimbase1-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libwind0-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libhx509-5-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libsqlite3-0:amd64 (3.8.10.2-1) ... Setting up libkrb5-26-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libheimntlm0-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libgssapi3-heimdal:amd64 (1.6~rc2+dfsg-10) ... Setting up libnettle6:amd64 (3.1.1-3) ... Setting up libhogweed4:amd64 (3.1.1-3) ... Setting up libtasn1-6:amd64 (4.5-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.15-5ubuntu1) ... Setting up libldap-2.4-2:amd64 (2.4.40+dfsg-1ubuntu2) ... Setting up libisl13:amd64 (0.14-2) ... Setting up libcloog-isl4:amd64 (0.18.3-1) ... Setting up libmpfr4:amd64 (3.1.3-1) ... Setting up gcc-4.9-base:amd64 (4.9.3-1ubuntu1) ... Setting up cpp-4.9 (4.9.3-1ubuntu1) ... Setting up binutils (2.25-9ubuntu1) ... Setting up libgomp1:amd64 (5.1.1-12ubuntu1) ... Setting up libitm1:amd64 (5.1.1-12ubuntu1) ... Setting up libatomic1:amd64 (5.1.1-12ubuntu1) ... Setting up libasan1:amd64 (4.9.3-1ubuntu1) ... Setting up liblsan0:amd64 (5.1.1-12ubuntu1) ... Setting up libtsan0:amd64 (5.1.1-12ubuntu1) ... Setting up libubsan0:amd64 (5.1.1-12ubuntu1) ... Setting up libcilkrts5:amd64 (5.1.1-12ubuntu1) ... Setting up libquadmath0:amd64 (5.1.1-12ubuntu1) ... Setting up libgcc-4.9-dev:amd64 (4.9.3-1ubuntu1) ... Setting up gcc-4.9 (4.9.3-1ubuntu1) ... Setting up libstdc++-4.9-dev:amd64 (4.9.3-1ubuntu1) ... Setting up g++-4.9 (4.9.3-1ubuntu1) ... Setting up libssl1.0.0:amd64 (1.0.2c-1ubuntu1) ... Checking for services that may need to be restarted...done. Checking for services that may need to be restarted...done. Setting up libkrb5support0:amd64 (1.13.2+dfsg-2) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-2) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-2) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-2) ... Setting up librtmp1:amd64 (2.4+20150115.gita107cef-1build1) ... Setting up libcurl3-gnutls:amd64 (7.43.0-1ubuntu1) ... Setting up apt-transport-https (1.0.9.10ubuntu1) ... Setting up openssl (1.0.2c-1ubuntu1) ... Setting up ca-certificates (20150426) ... Setting up libdpkg-perl (1.17.25ubuntu1) ... Setting up patch (2.7.5-1) ... Setting up dpkg-dev (1.17.25ubuntu1) ... Setting up linux-libc-dev:amd64 (3.19.0-22.22) ... Setting up pkg-create-dbgsym (0.69) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Processing triggers for ca-certificates (20150426) ... Updating certificates in /etc/ssl/certs... 13 added, 6 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-7623748', 'amd64', 'wily-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=wily-proposed', '--purge=never', '--nolog', '-A', 'hmmer_3.1b2-1.dsc'] Initiating build PACKAGEBUILD-7623748 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.2.0-68-generic #102-Ubuntu SMP Tue Aug 12 22:02:15 UTC 2014 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on tipua.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ hmmer 3.1b2-1 (amd64) 06 Jul 2015 05:13 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: hmmer Version: 3.1b2-1 Source Version: 3.1b2-1 Distribution: wily-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/hmmer-njdAcJ/hmmer-3.1b2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/hmmer-njdAcJ' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-7623748/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── hmmer_3.1b2-1.dsc exists in .; copying to chroot Check architectures ─────────────────── sh: 1: gcc: not found sbuild: warning: Couldn't determine gcc system type, falling back to default (native compilation) Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-g1GFXt/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed2 libnettle4 Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/818 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed Authentication warning overridden. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), autotools-dev dpkg-deb: building package `sbuild-build-depends-hmmer-dummy' in `/«BUILDDIR»/resolver-ioJ3M5/apt_archive/sbuild-build-depends-hmmer-dummy.deb'. Ign file: ./ InRelease Ign file: ./ Release.gpg Get:1 file: ./ Release [2119 B] Ign file: ./ Translation-en Reading package lists... Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install hmmer build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libhogweed2 libnettle4 Use 'apt-get autoremove' to remove them. The following extra packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libicu52 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican wordlist whois vacation dh-make apparmor-easyprof gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-apparmor file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libglib2.0-0 libicu52 libmagic1 libpipeline1 libunistring0 libxml2 man-db po-debconf sbuild-build-depends-hmmer-dummy 0 upgraded, 20 newly installed, 0 to remove and 0 not upgraded. Need to get 13.4 MB/13.4 MB of archives. After this operation, 52.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-hmmer-dummy Authentication warning overridden. Get:1 http://ftpmaster.internal/ubuntu/ wily/main libasprintf0c2 amd64 0.19.4-1ubuntu1 [6668 B] Get:2 http://ftpmaster.internal/ubuntu/ wily/main libpipeline1 amd64 1.4.0-1 [25.2 kB] Get:3 http://ftpmaster.internal/ubuntu/ wily/main libicu52 amd64 52.1-9 [6782 kB] Get:4 http://ftpmaster.internal/ubuntu/ wily/main libxml2 amd64 2.9.2+dfsg1-3 [714 kB] Get:5 http://ftpmaster.internal/ubuntu/ wily/main groff-base amd64 1.22.3-1 [1183 kB] Get:6 http://ftpmaster.internal/ubuntu/ wily/main bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:7 http://ftpmaster.internal/ubuntu/ wily/main man-db amd64 2.7.0.2-5 [863 kB] Get:8 http://ftpmaster.internal/ubuntu/ wily/main libglib2.0-0 amd64 2.45.3-1 [1109 kB] Get:9 http://ftpmaster.internal/ubuntu/ wily/main libcroco3 amd64 0.6.8-3 [83.2 kB] Get:10 http://ftpmaster.internal/ubuntu/ wily/main libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:11 http://ftpmaster.internal/ubuntu/ wily/main libmagic1 amd64 1:5.22+15-2ubuntu1 [211 kB] Get:12 http://ftpmaster.internal/ubuntu/ wily/main file amd64 1:5.22+15-2ubuntu1 [20.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ wily/main gettext-base amd64 0.19.4-1ubuntu1 [48.7 kB] Get:14 http://ftpmaster.internal/ubuntu/ wily/main autotools-dev all 20140911.1 [39.6 kB] Get:15 http://ftpmaster.internal/ubuntu/ wily/main gettext amd64 0.19.4-1ubuntu1 [854 kB] Get:16 http://ftpmaster.internal/ubuntu/ wily/main intltool-debian all 0.35.0+20060710.2 [24.5 kB] Get:17 http://ftpmaster.internal/ubuntu/ wily/main po-debconf all 1.0.18 [234 kB] Get:18 http://ftpmaster.internal/ubuntu/ wily/main dh-apparmor all 2.9.2-0ubuntu1 [11.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ wily/main debhelper all 9.20150507ubuntu1 [737 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.4 MB in 0s (21.3 MB/s) Selecting previously unselected package libasprintf0c2:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11739 files and directories currently installed.) Preparing to unpack .../libasprintf0c2_0.19.4-1ubuntu1_amd64.deb ... Unpacking libasprintf0c2:amd64 (0.19.4-1ubuntu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.0-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.0-1) ... Selecting previously unselected package libicu52:amd64. Preparing to unpack .../libicu52_52.1-9_amd64.deb ... Unpacking libicu52:amd64 (52.1-9) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+dfsg1-3_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+dfsg1-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-1_amd64.deb ... Unpacking groff-base (1.22.3-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.0.2-5_amd64.deb ... Unpacking man-db (2.7.0.2-5) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.45.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.45.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.8-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.8-3) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.22+15-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.22+15-2ubuntu1_amd64.deb ... Unpacking file (1:5.22+15-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu1_amd64.deb ... Unpacking gettext-base (0.19.4-1ubuntu1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20140911.1_all.deb ... Unpacking autotools-dev (20140911.1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu1_amd64.deb ... Unpacking gettext (0.19.4-1ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.2_all.deb ... Unpacking intltool-debian (0.35.0+20060710.2) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package dh-apparmor. Preparing to unpack .../dh-apparmor_2.9.2-0ubuntu1_all.deb ... Unpacking dh-apparmor (2.9.2-0ubuntu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20150507ubuntu1_all.deb ... Unpacking debhelper (9.20150507ubuntu1) ... Selecting previously unselected package sbuild-build-depends-hmmer-dummy. Preparing to unpack .../sbuild-build-depends-hmmer-dummy.deb ... Unpacking sbuild-build-depends-hmmer-dummy (0.invalid.0) ... Setting up libasprintf0c2:amd64 (0.19.4-1ubuntu1) ... Setting up libpipeline1:amd64 (1.4.0-1) ... Setting up libicu52:amd64 (52.1-9) ... Setting up libxml2:amd64 (2.9.2+dfsg1-3) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libglib2.0-0:amd64 (2.45.3-1) ... No schema files found: doing nothing. Setting up libcroco3:amd64 (0.6.8-3) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.22+15-2ubuntu1) ... Setting up file (1:5.22+15-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu1) ... Setting up autotools-dev (20140911.1) ... Setting up gettext (0.19.4-1ubuntu1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up dh-apparmor (2.9.2-0ubuntu1) ... Setting up debhelper (9.20150507ubuntu1) ... Setting up sbuild-build-depends-hmmer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.2.0-68-generic amd64 (x86_64) Toolchain package versions: binutils_2.25-9ubuntu1 dpkg-dev_1.17.25ubuntu1 g++-4.9_4.9.3-1ubuntu1 gcc-4.9_4.9.3-1ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-4.9-dev_4.9.3-1ubuntu1 libstdc++6_5.1.1-12ubuntu1 linux-libc-dev_3.19.0-22.22 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.19-1 apt_1.0.9.10ubuntu1 apt-transport-https_1.0.9.10ubuntu1 autotools-dev_20140911.1 base-files_7.2ubuntu10 base-passwd_3.5.37 bash_4.3-11ubuntu3 binutils_2.25-9ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.26.2-6ubuntu1 build-essential_11.6ubuntu6 bzip2_1.0.6-8 ca-certificates_20150426 coreutils_8.23-3ubuntu1 cpp_4:4.9.2-2ubuntu2 cpp-4.9_4.9.3-1ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.55ubuntu2 debhelper_9.20150507ubuntu1 debianutils_4.5.1 dh-apparmor_2.9.2-0ubuntu1 diffutils_1:3.3-1 dmsetup_2:1.02.90-2ubuntu1 dpkg_1.17.25ubuntu1 dpkg-dev_1.17.25ubuntu1 e2fslibs_1.42.12-1ubuntu2 e2fsprogs_1.42.12-1ubuntu2 fakeroot_1.20.2-1ubuntu1 file_1:5.22+15-2ubuntu1 findutils_4.4.2-9build1 g++_4:4.9.2-2ubuntu2 g++-4.9_4.9.3-1ubuntu1 gcc_4:4.9.2-2ubuntu2 gcc-4.9_4.9.3-1ubuntu1 gcc-4.9-base_4.9.3-1ubuntu1 gcc-5-base_5.1.1-12ubuntu1 gettext_0.19.4-1ubuntu1 gettext-base_0.19.4-1ubuntu1 gnupg_1.4.18-7ubuntu1 gpgv_1.4.18-7ubuntu1 grep_2.21-2 groff-base_1.22.3-1 gzip_1.6-4ubuntu1 hostname_3.15ubuntu2 init_1.23ubuntu3 initscripts_2.88dsf-59.2ubuntu1 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapparmor1_2.9.2-0ubuntu1 libapt-pkg4.12_1.0.9.10ubuntu1 libasan1_4.9.3-1ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10 libasprintf0c2_0.19.4-1ubuntu1 libatomic1_5.1.1-12ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.3.7-1ubuntu2 libaudit1_1:2.3.7-1ubuntu2 libblkid1_2.26.2-6ubuntu1 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-9 libcap2-bin_1:2.24-9 libcilkrts5_5.1.1-12ubuntu1 libcloog-isl4_0.18.3-1 libcomerr2_1.42.12-1ubuntu2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.1-1ubuntu7 libcurl3-gnutls_7.43.0-1ubuntu1 libdb5.3_5.3.28-9 libdbus-1-3_1.8.12-1ubuntu5 libdebconfclient0_0.192ubuntu1 libdevmapper1.02.1_2:1.02.90-2ubuntu1 libdpkg-perl_1.17.25ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.26.2-6ubuntu1 libffi6_3.2.1-2 libgcc-4.9-dev_4.9.3-1ubuntu1 libgcc1_1:5.1.1-12ubuntu1 libgcrypt20_1.6.3-2ubuntu1 libgdbm3_1.8.3-13.1 libglib2.0-0_2.45.3-1 libgmp10_2:6.0.0+dfsg-6ubuntu1 libgnutls-deb0-28_3.3.15-5ubuntu1 libgomp1_5.1.1-12ubuntu1 libgpg-error0_1.19-2 libgssapi-krb5-2_1.13.2+dfsg-2 libgssapi3-heimdal_1.6~rc2+dfsg-10 libhcrypto4-heimdal_1.6~rc2+dfsg-10 libheimbase1-heimdal_1.6~rc2+dfsg-10 libheimntlm0-heimdal_1.6~rc2+dfsg-10 libhogweed2_2.7.1-5 libhogweed4_3.1.1-3 libhx509-5-heimdal_1.6~rc2+dfsg-10 libicu52_52.1-9 libidn11_1.28-1ubuntu2 libisl13_0.14-2 libitm1_5.1.1-12ubuntu1 libk5crypto3_1.13.2+dfsg-2 libkeyutils1_1.5.9-5ubuntu1 libkmod2_18-3ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10 libkrb5-3_1.13.2+dfsg-2 libkrb5support0_1.13.2+dfsg-2 libldap-2.4-2_2.4.40+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.1.1-12ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.22+15-2ubuntu1 libmount1_2.26.2-6ubuntu1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle4_2.7.1-5 libnettle6_3.1.1-3 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-2 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-3.3ubuntu1 libpipeline1_1.4.0-1 libpng12-0_1.2.51-0ubuntu3 libprocps3_1:3.3.9-1ubuntu8 libquadmath0_5.1.1-12ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libseccomp2_2.2.1-2ubuntu1 libselinux1_2.3-2 libsemanage-common_2.3-1build1 libsemanage1_2.3-1build1 libsepol1_2.3-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.26.2-6ubuntu1 libsqlite3-0_3.8.10.2-1 libss2_1.42.12-1ubuntu2 libssl1.0.0_1.0.2c-1ubuntu1 libstdc++-4.9-dev_4.9.3-1ubuntu1 libstdc++6_5.1.1-12ubuntu1 libsystemd0_221-1ubuntu2 libtasn1-6_4.5-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtsan0_5.1.1-12ubuntu1 libubsan0_5.1.1-12ubuntu1 libudev1_221-1ubuntu2 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-5 libuuid1_2.26.2-6ubuntu1 libwind0-heimdal_1.6~rc2+dfsg-10 libxml2_2.9.2+dfsg1-3 linux-libc-dev_3.19.0-22.22 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu6 lsb-base_4.1+Debian11ubuntu8 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17ubuntu2 mount_2.26.2-6ubuntu1 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2c-1ubuntu1 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu6 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.69 pkgbinarymangler_121 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hmmer-dummy_0.invalid.0 sed_4.2.2-4ubuntu1 sensible-utils_0.0.9 systemd_221-1ubuntu2 systemd-sysv_221-1ubuntu2 sysv-rc_2.88dsf-59.2ubuntu1 sysvinit-utils_2.88dsf-59.2ubuntu1 tar_1.27.1-2 tzdata_2015e-1 ubuntu-keyring_2012.05.19 udev_221-1ubuntu2 util-linux_2.26.2-6ubuntu1 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu1 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Sun Jul 5 20:48:14 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./hmmer_3.1b2-1.dsc dpkg-source: info: extracting hmmer in hmmer-3.1b2 dpkg-source: info: unpacking hmmer_3.1b2.orig.tar.gz dpkg-source: info: unpacking hmmer_3.1b2-1.debian.tar.xz dpkg-source: info: applying debian-changes-3.0-1 dpkg-source: info: applying debian-changes-3.0-2.1 Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── HOME=/home/buildd LANG=C LANGUAGE=en_GB: LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package hmmer dpkg-buildpackage: source version 3.1b2-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build hmmer-3.1b2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autotools-dev_restoreconfig dh_clean debian/rules build dh build --with autotools_dev dh_testdir dh_autotools-dev_updateconfig debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: Configuring HMMER for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu configure: Full HMMER source distribution - using full configuration checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking for a BSD-compatible install... /usr/bin/install -c checking how to run the C preprocessor... gcc -E checking for C compiler vendor... (cached) gnu checking for gcc option to accept ISO C99... -std=gnu99 checking for gcc -std=gnu99 option to accept ISO Standard C... (cached) -std=gnu99 checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether you have a GNU make... yes, you do; and we assume you will use it! checking for a sed that does not truncate output... /bin/sed checking for gcc -std=gnu99 option to produce PIC... -fPIC checking whether C compiler accepts -msse2... yes checking compiler support for sse2 cast functions... yes checking whether SSE2 is supported... yes checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes configure: Activating Intel/AMD SSE optimized DP implementation checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for stat... yes checking for fstat... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/Makefile config.status: creating libdivsufsort/Makefile config.status: creating Makefile config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_sse to src/impl configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking HMMER configuration: compiler: gcc -std=gnu99 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -fPIC host: x86_64-pc-linux-gnu linker: -Wl,-Bsymbolic-functions -Wl,-z,relro libraries: DP implementation: sse make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' SUBDIR easel make[2]: Entering directory '/«PKGBUILDDIR»/easel' CC easel.o CC esl_alphabet.o CC esl_buffer.o CC esl_cluster.o CC esl_composition.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_getopts.o CC esl_gev.o CC esl_gumbel.o CC esl_histogram.o CC esl_hmm.o CC esl_hyperexp.o CC esl_keyhash.o CC esl_mem.o CC esl_minimizer.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_clustal.o CC esl_msafile_phylip.o CC esl_msafile_psiblast.o CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_random.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_sse.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_threads.o CC esl_translate.o CC esl_tree.o CC esl_vectorops.o CC esl_vmx.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o AR libeasel.a SUBDIR miniapps make[3]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' CC esl-afetch.o GEN esl-afetch CC esl-alimanip.o GEN esl-alimanip CC esl-alimap.o GEN esl-alimap CC esl-alimask.o GEN esl-alimask CC esl-alimerge.o GEN esl-alimerge CC esl-alipid.o GEN esl-alipid CC esl-alistat.o GEN esl-alistat CC esl-cluster.o GEN esl-cluster CC esl-compalign.o GEN esl-compalign CC esl-compstruct.o GEN esl-compstruct CC esl-construct.o GEN esl-construct CC esl-histplot.o GEN esl-histplot CC esl-mask.o GEN esl-mask CC esl-reformat.o GEN esl-reformat CC esl-selectn.o GEN esl-selectn CC esl-seqrange.o GEN esl-seqrange CC esl-seqstat.o GEN esl-seqstat CC esl-sfetch.o GEN esl-sfetch CC esl-shuffle.o GEN esl-shuffle CC esl-ssdraw.o GEN esl-ssdraw CC esl-stranslate.o GEN esl-stranslate CC esl-weight.o GEN esl-weight make[3]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' make[2]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR libdivsufsort make[2]: Entering directory '/«PKGBUILDDIR»/libdivsufsort' CC divsufsort.o AR libdivsufsort.a make[2]: Leaving directory '/«PKGBUILDDIR»/libdivsufsort' SUBDIR src make[2]: Entering directory '/«PKGBUILDDIR»/src' CC alimask.o CC build.o CC cachedb.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o CC generic_fwdback.o CC generic_fwdback_chk.o CC generic_fwdback_banded.o CC generic_null2.o CC generic_msv.o CC generic_optacc.o CC generic_stotrace.o CC generic_viterbi.o CC generic_vtrace.o CC h2_io.o CC heatmap.o CC hmmlogo.o CC hmmdmstr.o In file included from /usr/include/string.h:639:0, from hmmdmstr.c:13: In function 'strncat', inlined from 'clientside_loop' at hmmdmstr.c:1405:5: /usr/include/x86_64-linux-gnu/bits/string3.h:156:3: warning: call to __builtin___strncat_chk might overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ CC hmmdwrkr.o CC hmmdutils.o CC hmmer.o CC logsum.o CC modelconfig.o CC modelstats.o CC mpisupport.o CC seqmodel.o CC tracealign.o CC p7_alidisplay.o CC p7_bg.o CC p7_builder.o CC p7_domaindef.o CC p7_gbands.o CC p7_gmx.o CC p7_gmxb.o CC p7_gmxchk.o CC p7_hmm.o CC p7_hmmcache.o CC p7_hmmfile.o CC p7_hmmwindow.o CC p7_null3.o CC p7_pipeline.o CC p7_prior.o CC p7_profile.o CC p7_spensemble.o CC p7_tophits.o CC p7_trace.o CC p7_scoredata.o CC hmmpgmd2msa.o CC fm_alphabet.o CC fm_general.o CC fm_sse.o CC fm_ssv.o AR libhmmer-src.stamp SUBDIR impl_sse make[3]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' CC decoding.o CC fwdback.o CC io.o CC ssvfilter.o CC msvfilter.o CC null2.o CC optacc.o CC stotrace.o CC vitfilter.o CC p7_omx.o CC p7_oprofile.o CC mpi.o AR libhmmer-impl.stamp make[3]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' GEN alimask CC hmmalign.o GEN hmmalign CC hmmbuild.o GEN hmmbuild CC hmmconvert.o GEN hmmconvert CC hmmemit.o GEN hmmemit CC hmmfetch.o GEN hmmfetch GEN hmmlogo CC hmmpress.o GEN hmmpress CC hmmscan.o GEN hmmscan CC hmmsearch.o GEN hmmsearch CC hmmsim.o GEN hmmsim CC hmmstat.o GEN hmmstat CC jackhmmer.o GEN jackhmmer CC phmmer.o GEN phmmer CC nhmmer.o GEN nhmmer CC nhmmscan.o GEN nhmmscan CC hmmpgmd.o GEN hmmpgmd CC hmmc2.o In file included from /usr/include/string.h:639:0, from hmmc2.c:10: In function 'strncat', inlined from 'main' at hmmc2.c:364:7: /usr/include/x86_64-linux-gnu/bits/string3.h:156:3: warning: call to __builtin___strncat_chk might overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ GEN hmmc2 CC makehmmerdb.o GEN makehmmerdb CC hmmerfm-exactmatch.o GEN hmmerfm-exactmatch make[2]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR profmark make[2]: Entering directory '/«PKGBUILDDIR»/profmark' CC create-profmark.o GEN create-profmark CC rocplot.o GEN rocplot make[2]: Leaving directory '/«PKGBUILDDIR»/profmark' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' make check make[2]: Entering directory '/«PKGBUILDDIR»' SUBDIR easel make[3]: Entering directory '/«PKGBUILDDIR»/easel' GEN easel_utest GEN esl_alphabet_utest GEN esl_buffer_utest GEN esl_cluster_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_getopts_utest GEN esl_gumbel_utest GEN esl_histogram_utest GEN esl_hyperexp_utest GEN esl_keyhash_utest GEN esl_mem_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_random_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_sse_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest SUBDIR miniapps make[4]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' make[3]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR libdivsufsort make[3]: Entering directory '/«PKGBUILDDIR»/libdivsufsort' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/libdivsufsort' SUBDIR src make[3]: Entering directory '/«PKGBUILDDIR»/src' SUBDIR impl_sse make[4]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' GEN build_utest GEN generic_fwdback_utest GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_stotrace_utest GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest CC itest_brute.o GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' GEN decoding_utest GEN fwdback_utest GEN io_utest GEN msvfilter_utest GEN null2_utest GEN optacc_utest GEN stotrace_utest GEN vitfilter_utest make[4]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' make[3]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR easel make[3]: Entering directory '/«PKGBUILDDIR»/easel' SUBDIR miniapps make[4]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' SUBDIR testsuite make[4]: Entering directory '/«PKGBUILDDIR»/easel/testsuite' Running Easel test suite... exercise 1 [ alphabet-utest] ... ok. exercise 2 [ buffer-utest] ... ok. exercise 3 [ cluster-utest] ... ok. exercise 4 [ dirichlet-utest] ... ok. exercise 5 [ distance-utest] ... ok. exercise 6 [ dmatrix-utest] ... ok. exercise 7 [ easel-utest] ... ok. exercise 8 [ exponential-utest] ... ok. exercise 9 [ fileparser-utest] ... ok. exercise 10 [ gamma-utest] ... ok. exercise 11 [ getopts-utest] ... ok. exercise 12 [ gumbel-utest] ... ok. exercise 13 [ histogram-utest] ... ok. exercise 14 [ hyperexp-utest] ... ok. exercise 15 [ keyhash-utest] ... ok. exercise 16 [ mem-utest] ... ok. exercise 17 [ msa-utest] ... ok. exercise 18 [ msafile] ... ok. exercise 19 [ msafile2] ... ok. exercise 20 [ msafile-a2m] ... ok. exercise 21 [ msafile-afa] ... ok. exercise 22 [ msafile-clustal] ... ok. exercise 23 [ msafile-phylip] ... ok. exercise 24 [ msafile-psiblast] ... ok. exercise 25 [ msafile-selex] ... ok. exercise 26 [ msafile-stockholm] ... ok. exercise 27 [ msacluster-utest] ... ok. exercise 28 [ msaweight-utest] ... ok. exercise 29 [ random-utest] ... ok. exercise 30 [ randomseq-utest] ... ok. exercise 31 [ ratematrix-utest] ... ok. exercise 32 [ recorder-utest] ... ok. exercise 33 [ regexp-utest] ... ok. exercise 34 [ rootfinder-utest] ... ok. exercise 35 [ scorematrix-utest] ... ok. exercise 36 [ sq-utest] ... ok. exercise 37 [ sqio-utest] ... ok. exercise 38 [ sse-utest] ... ok. exercise 39 [ ssi-utest] ... ok. exercise 40 [ stack-utest] ... ok. exercise 41 [ stats-utest] ... ok. exercise 42 [ stretchexp-utest] ... ok. exercise 43 [ tree-utest] ... ok. exercise 44 [ vectorops-utest] ... ok. exercise 45 [ weibull-utest] ... ok. exercise 46 [ wuss-utest] ... ok. exercise 47 [ e2] ... ok. exercise 48 [ degen-residues] ... ok. exercise 49 [ ncbi-indices] ... ok. exercise 50 [ blank-gf] ... ok. exercise 51 [ esl-afetch] ... ok. exercise 52 [ esl-alimanip] ... ok. exercise 53 [ esl-alimap] ... ok. exercise 54 [ esl-alimask] ... ok. exercise 55 [ esl-alimerge] ... ok. exercise 56 [ esl-alistat] ... ok. exercise 57 [ esl-compalign] ... ok. exercise 58 [ esl-construct] ... ok. exercise 59 [ esl-mask] ... ok. exercise 60 [ esl-seqrange] ... ok. exercise 61 [ esl-shuffle] ... ok. exercise 62 [ esl-ssdraw] ... ok. All 62 exercises at level <= 2 passed. System information: Mon Jul 6 05:15:45 UTC 2015 Linux tipua 3.2.0-68-generic #102-Ubuntu SMP Tue Aug 12 22:02:15 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux make[4]: Leaving directory '/«PKGBUILDDIR»/easel/testsuite' make[3]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR testsuite make[3]: Entering directory '/«PKGBUILDDIR»/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ logsum] ... ok. exercise 8 [ modelconfig] ... ok. exercise 9 [ seqmodel] ... ok. exercise 10 [ p7_alidisplay] ... ok. exercise 11 [ p7_bg] ... ok. exercise 12 [ p7_gmx] ... ok. exercise 13 [ p7_hmm] ... ok. exercise 14 [ p7_hmmfile] ... ok. exercise 15 [ p7_profile] ... ok. exercise 16 [ p7_tophits] ... ok. exercise 17 [ p7_trace] ... ok. exercise 18 [ p7_scoredata] ... ok. exercise 19 [ decoding] ... ok. exercise 20 [ fwdback] ... ok. exercise 21 [ io] ... ok. exercise 22 [ msvfilter] ... ok. exercise 23 [ null2] ... ok. exercise 24 [ optacc] ... ok. exercise 25 [ stotrace] ... ok. exercise 26 [ vitfilter] ... ok. exercise 27 [ hmmalign] ... ok. exercise 28 [ hmmalign/-h] ... ok. exercise 29 [ hmmalign/-o] ... ok. exercise 30 [ hmmalign/--mapali] ... ok. exercise 31 [ hmmalign/--trim] ... ok. exercise 32 [ hmmalign/--amino] ... ok. exercise 33 [ hmmalign/--informat] ... ok. exercise 34 [ hmmalign/--outformat] ... ok. exercise 35 [ build] ... ok. exercise 36 [ build/-h] ... ok. exercise 37 [ build/-n] ... ok. exercise 38 [ build/-o] ... ok. exercise 39 [ build/-O] ... ok. exercise 40 [ build/--amino] ... ok. exercise 41 [ build/--dna] ... ok. exercise 42 [ build/--rna] ... ok. exercise 43 [ build/--fast] ... ok. exercise 44 [ build/--hand] ... ok. exercise 45 [ build/--symfrac] ... ok. exercise 46 [ build/--fragthresh] ... ok. exercise 47 [ build/--wpb] ... ok. exercise 48 [ build/--wgsc] ... ok. exercise 49 [ build/--wblosum] ... ok. exercise 50 [ build/--wnone] ... ok. exercise 51 [ build/--wid] ... ok. exercise 52 [ build/--eent] ... ok. exercise 53 [ build/--eclust] ... ok. exercise 54 [ build/--enone] ... ok. exercise 55 [ build/--eset] ... ok. exercise 56 [ build/--ere] ... ok. exercise 57 [ build/--esigma] ... ok. exercise 58 [ build/--eid] ... ok. exercise 59 [ build/--pnone] ... ok. exercise 60 [ build/--plaplace] ... ok. exercise 61 [ build/--EmL] ... ok. exercise 62 [ build/--EmN] ... ok. exercise 63 [ build/--EvL] ... ok. exercise 64 [ build/--EvN] ... ok. exercise 65 [ build/--EfL] ... ok. exercise 66 [ build/--EfN] ... ok. exercise 67 [ build/--Eft] ... ok. exercise 68 [ build/--informat] ... ok. exercise 69 [ build/--seed] ... ok. exercise 70 [ hmmemit] ... ok. exercise 71 [ hmmemit/-h] ... ok. exercise 72 [ hmmemit/-c] ... ok. exercise 73 [ hmmemit/-o] ... ok. exercise 74 [ hmmemit/-p] ... ok. exercise 75 [ hmmemit/-N] ... ok. exercise 76 [ hmmemit/-L] ... ok. exercise 77 [ hmmemit/--local] ... ok. exercise 78 [ hmmemit/--unilocal] ... ok. exercise 79 [ hmmemit/--glocal] ... ok. exercise 80 [ hmmemit/--uniglocal] ... ok. exercise 81 [ search] ... ok. exercise 82 [ search/-h] ... ok. exercise 83 [ search/-o] ... ok. exercise 84 [ search/-A] ... ok. exercise 85 [ search/--tblout] ... ok. exercise 86 [ search/--domtblout] ... ok. exercise 87 [ search/--pfamtblout] ... ok. exercise 88 [ search/--acc] ... ok. exercise 89 [ search/--noali] ... ok. exercise 90 [ search/--notextw] ... ok. exercise 91 [ search/--textw] ... ok. exercise 92 [ search/-E] ... ok. exercise 93 [ search/-T] ... ok. exercise 94 [ search/--domE] ... ok. exercise 95 [ search/--domT] ... ok. exercise 96 [ search/--incE] ... ok. exercise 97 [ search/--incT] ... ok. exercise 98 [ search/--incdomE] ... ok. exercise 99 [ search/--incdomT] ... ok. exercise 100 [ search/--cut_ga] ... ok. exercise 101 [ search/--cut_nc] ... ok. exercise 102 [ search/--cut_tc] ... ok. exercise 103 [ search/--max] ... ok. exercise 104 [ search/--F1] ... ok. exercise 105 [ search/--F2] ... ok. exercise 106 [ search/--F3] ... ok. exercise 107 [ search/--nobias] ... ok. exercise 108 [ search/--nonull2] ... ok. exercise 109 [ search/-Z] ... ok. exercise 110 [ search/--domZ] ... ok. exercise 111 [ search/--seed] ... ok. exercise 112 [ search/--tformat] ... ok. exercise 113 [ jackhmmer] ... ok. exercise 114 [ j/-h] ... ok. exercise 115 [ j/-N] ... ok. exercise 116 [ j/-o] ... ok. exercise 117 [ j/-A] ... ok. exercise 118 [ j/--tblout] ... ok. exercise 119 [ j/--domtblout] ... ok. exercise 120 [ j/--chkhmm] ... ok. exercise 121 [ j/--chkali] ... ok. exercise 122 [ j/--acc] ... ok. exercise 123 [ j/--noali] ... ok. exercise 124 [ j/--notextw] ... ok. exercise 125 [ j/--textw] ... ok. exercise 126 [ j/--popen] ... ok. exercise 127 [ j/--pextend] ... ok. exercise 128 [ j/--mxfile] ... ok. exercise 129 [ j/-E] ... ok. exercise 130 [ j/-T] ... ok. exercise 131 [ j/--domE] ... ok. exercise 132 [ j/--domT] ... ok. exercise 133 [ j/--incE] ... ok. exercise 134 [ j/--incT] ... ok. exercise 135 [ j/--incdomE] ... ok. exercise 136 [ j/--incdomT] ... ok. exercise 137 [ j/--max] ... ok. exercise 138 [ j/--F1] ... ok. exercise 139 [ j/--F2] ... ok. exercise 140 [ j/--F3] ... ok. exercise 141 [ j/--nobias] ... ok. exercise 142 [ j/--EmL] ... ok. exercise 143 [ j/--EmN] ... ok. exercise 144 [ j/--EvL] ... ok. exercise 145 [ j/--EvN] ... ok. exercise 146 [ j/--EfL] ... ok. exercise 147 [ j/--EfN] ... ok. exercise 148 [ j/--Eft] ... ok. exercise 149 [ j/--nonull2] ... ok. exercise 150 [ j/-Z] ... ok. exercise 151 [ j/--domZ] ... ok. exercise 152 [ j/--seed] ... ok. exercise 153 [ j/--qformat] ... ok. exercise 154 [ j/--tformat] ... ok. exercise 155 [ phmmer] ... ok. exercise 156 [ phmmer/-h] ... ok. exercise 157 [ phmmer/-o] ... ok. exercise 158 [ phmmer/-A] ... ok. exercise 159 [ phmmer/--tblout] ... ok. exercise 160 [ phmmer/--domtblout] ... ok. exercise 161 [ phmmer/--pfamtblout] ... ok. exercise 162 [ phmmer/--acc] ... ok. exercise 163 [ phmmer/--noali] ... ok. exercise 164 [ phmmer/--notextw] ... ok. exercise 165 [ phmmer/--textw] ... ok. exercise 166 [ phmmer/--popen] ... ok. exercise 167 [ phmmer/--pextend] ... ok. exercise 168 [ phmmer/--mxfile] ... ok. exercise 169 [ phmmer/-E] ... ok. exercise 170 [ phmmer/-T] ... ok. exercise 171 [ phmmer/--domE] ... ok. exercise 172 [ phmmer/--domT] ... ok. exercise 173 [ phmmer/--incE] ... ok. exercise 174 [ phmmer/--incT] ... ok. exercise 175 [ phmmer/--incdomE] ... ok. exercise 176 [ phmmer/--incdomT] ... ok. exercise 177 [ phmmer/--max] ... ok. exercise 178 [ phmmer/--F1] ... ok. exercise 179 [ phmmer/--F2] ... ok. exercise 180 [ phmmer/--F3] ... ok. exercise 181 [ phmmer/--nobias] ... ok. exercise 182 [ phmmer/--EmL] ... ok. exercise 183 [ phmmer/--EmN] ... ok. exercise 184 [ phmmer/--EvL] ... ok. exercise 185 [ phmmer/--EvN] ... ok. exercise 186 [ phmmer/--EfL] ... ok. exercise 187 [ phmmer/--EfN] ... ok. exercise 188 [ phmmer/--Eft] ... ok. exercise 189 [ phmmer/--nonull2] ... ok. exercise 190 [ phmmer/-Z] ... ok. exercise 191 [ phmmer/--domZ] ... ok. exercise 192 [ phmmer/--seed] ... ok. exercise 193 [ phmmer/--qformat] ... ok. exercise 194 [ phmmer/--tformat] ... ok. exercise 195 [ nhmmer] ... ok. exercise 196 [ nhmmer/-h] ... ok. exercise 197 [ nhmmer/-o] ... ok. exercise 198 [ nhmmer/-A] ... ok. exercise 199 [ nhmmer/--tblout] ... ok. exercise 200 [ nhmmer/--dfamtblout] ... ok. exercise 201 [ nhmmer/--acc] ... ok. exercise 202 [ nhmmer/--noali] ... ok. exercise 203 [ nhmmer/--notextw] ... ok. exercise 204 [ nhmmer/--textw] ... ok. exercise 205 [ nhmmer/-E] ... ok. exercise 206 [ nhmmer/-T] ... ok. exercise 207 [ nhmmer/--incE] ... ok. exercise 208 [ nhmmer/--incT] ... ok. exercise 209 [ nhmmer/--max] ... ok. exercise 210 [ nhmmer/--F1] ... ok. exercise 211 [ nhmmer/--F2] ... ok. exercise 212 [ nhmmer/--F3] ... ok. exercise 213 [ nhmmer/--nobias] ... ok. exercise 214 [ nhmmer/--nonull2] ... ok. exercise 215 [ nhmmer/-Z] ... ok. exercise 216 [ nhmmer/--seed] ... ok. exercise 217 [ nhmmscan] ... ok. exercise 218 [ nhmmscan/-h] ... ok. exercise 219 [ nhmmscan/-o] ... ok. exercise 220 [ nhmmscan/--tblout] ... ok. exercise 221 [nhmmscan/--dfamtblout] ... ok. exercise 222 [ nhmmscan/--acc] ... ok. exercise 223 [ nhmmscan/--noali] ... ok. exercise 224 [ nhmmscan/--notextw] ... ok. exercise 225 [ nhmmscan/--textw] ... ok. exercise 226 [ nhmmscan/-E] ... ok. exercise 227 [ nhmmscan/-T] ... ok. exercise 228 [ nhmmscan/--incE] ... ok. exercise 229 [ nhmmscan/--incT] ... ok. exercise 230 [ nhmmscan/--max] ... ok. exercise 231 [ nhmmscan/--F1] ... ok. exercise 232 [ nhmmscan/--F2] ... ok. exercise 233 [ nhmmscan/--F3] ... ok. exercise 234 [ nhmmscan/--nobias] ... ok. exercise 235 [ nhmmscan/--nonull2] ... ok. exercise 236 [ nhmmscan/-Z] ... ok. exercise 237 [ nhmmscan/--seed] ... ok. exercise 238 [ hmmbuild_variation] ... ok. exercise 239 [ hmmscan_variation] ... ok. exercise 240 [ hmmsearch_variation] ... ok. exercise 241 [ phmmer_variation] ... ok. exercise 242 [ mapali] ... ok. exercise 243 [ fragments] ... ok. exercise 244 [ nonresidues] ... ok. exercise 245 [ opt-annotation] ... ok. exercise 246 [ dup-names] ... ok. exercise 247 [ mapali-again] ... ok. exercise 248 [ delete-corruption] ... ok. exercise 249 [ msa-integrity] ... ok. exercise 250 [ hmmemit-consensus] ... ok. exercise 251 [ hmmconvert] ... ok. exercise 252 [ stdin_pipes] ... ok. exercise 253 [ nhmmer_generic] ... ok. exercise 254 [ hmmpgmd_ga] ... ok. exercise 255 [ brute-itest] ... ok. exercise 256 [ hmmpress-itest] ... ok. exercise 257 [ h39] ... ok. exercise 258 [ h45] ... ok. exercise 259 [ h50] ... ok. exercise 260 [ h82] ... ok. All 260 exercises at level <= 2 passed. System information: Mon Jul 6 05:16:04 UTC 2015 Linux tipua 3.2.0-68-generic #102-Ubuntu SMP Tue Aug 12 22:02:15 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux make[3]: Leaving directory '/«PKGBUILDDIR»/testsuite' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autotools_dev dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/bin /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/include /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/share/doc/hmmer SUBDIR src make[2]: Entering directory '/«PKGBUILDDIR»/src' SUBDIR impl_sse make[3]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' for file in impl_sse.h; do \ /usr/bin/install -c -m 0644 ./$file /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ done make[3]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan hmmpgmd hmmc2 makehmmerdb hmmerfm-exactmatch; do \ /usr/bin/install -c -m 0755 $file /«PKGBUILDDIR»/debian/tmp/usr/bin/ ;\ done /usr/bin/install -c -m 0755 libhmmer.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/ for file in hmmer.h cachedb.h p7_gbands.h p7_gmxb.h p7_gmxchk.h p7_hmmcache.h; do \ /usr/bin/install -c -m 0644 ./$file /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ done /usr/bin/install -c -m 0644 p7_config.h /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ make[2]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR documentation make[2]: Entering directory '/«PKGBUILDDIR»/documentation' SUBDIR man make[3]: Entering directory '/«PKGBUILDDIR»/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0755 ./$file.man /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[3]: Leaving directory '/«PKGBUILDDIR»/documentation/man' make[2]: Leaving directory '/«PKGBUILDDIR»/documentation' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link debian/rules override_dh_compress make[1]: Entering directory '/«PKGBUILDDIR»' dh_compress -Xtutorial/ make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms dh_strip dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: hmmer dh_strip debug symbol extraction: packages to act on: hmmer dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package hmmer-doc: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: hmmer dh_gencontrol debug symbol wrapper: packages to act on: hmmer dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package hmmer (pkgdir debian/hmmer, ddeb package dir debian/hmmer-dbgsym) dh_gencontrol debug symbol wrapper: building hmmer-dbgsym_3.1b2-1_amd64.ddeb dpkg-deb: building package `hmmer-dbgsym' in `../hmmer-dbgsym_3.1b2-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile hmmer-dbgsym_3.1b2-1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 121 pkgstriptranslations: processing hmmer (in debian/hmmer); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer/DEBIAN/control, package hmmer, directory debian/hmmer pkgstripfiles: Truncating usr/share/doc/hmmer/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package hmmer took 0 s dpkg-deb: building package `hmmer' in `../hmmer_3.1b2-1_amd64.deb'. INFO: pkgstriptranslations version 121 pkgstriptranslations: processing hmmer-doc (in debian/hmmer-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer-doc/DEBIAN/control, package hmmer-doc, directory debian/hmmer-doc pkgstripfiles: Truncating usr/share/doc/hmmer-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package hmmer-doc (to save build time) dpkg-deb: building package `hmmer-doc' in `../hmmer-doc_3.1b2-1_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../hmmer_3.1b2-1_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build hmmer-3.1b2 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20150706-0516 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer_3.1b2-1_amd64.changes: ──────────────────────────── Format: 1.8 Date: Sun, 05 Jul 2015 22:45:41 +0200 Source: hmmer Binary: hmmer hmmer-doc Architecture: amd64 all Version: 3.1b2-1 Distribution: wily-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) Changes: hmmer (3.1b2-1) unstable; urgency=medium . * New upstream version (adapted patches) * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control Checksums-Sha1: 4c350028bd9511066cab2c53c6cfbfe639626f2c 1140664 hmmer_3.1b2-1_amd64.deb e9ec0f6af6fd6b8a57ab38fc4a6f18e996ce7337 993030 hmmer-doc_3.1b2-1_all.deb c90d11fad9920e2b2e378cd52d46def453a3e6de 4114622 hmmer-dbgsym_3.1b2-1_amd64.ddeb Checksums-Sha256: cf52a28c68c24b5c65bfbae902d40b3294900be64fec8a7ebf9d70278bad0e63 1140664 hmmer_3.1b2-1_amd64.deb 28368d67ef790cfc40cda7076b19873823f6038f397ff3ffc6abcb6210b5512d 993030 hmmer-doc_3.1b2-1_all.deb a2d3aaf86100e98d878789e0d457f82834d1cdfa0fde4f235675598c03b72228 4114622 hmmer-dbgsym_3.1b2-1_amd64.ddeb Files: 551a298d1fb122581bbb6b9f6be000a5 1140664 science optional hmmer_3.1b2-1_amd64.deb 3af3f34bf7109b1399a23288004c5075 993030 doc optional hmmer-doc_3.1b2-1_all.deb 78ac196e5ee1c6450c29efd7ddd9fcfc 4114622 science extra hmmer-dbgsym_3.1b2-1_amd64.ddeb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer_3.1b2-1_amd64.deb ─────────────────────── new debian package, version 2.0. size 1140664 bytes: control archive= 1904 bytes. 857 bytes, 20 lines control 2493 bytes, 42 lines md5sums Package: hmmer Version: 3.1b2-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 11581 Depends: libc6 (>= 2.15) Suggests: hmmer-doc (>= 3.1b2-1) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2015-07-06 05:16 ./ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/bin/ -rwxr-xr-x root/root 299960 2015-07-06 05:16 ./usr/bin/alimask -rwxr-xr-x root/root 638832 2015-07-06 05:16 ./usr/bin/hmmalign -rwxr-xr-x root/root 725352 2015-07-06 05:16 ./usr/bin/hmmbuild -rwxr-xr-x root/root 648272 2015-07-06 05:16 ./usr/bin/hmmc2 -rwxr-xr-x root/root 396720 2015-07-06 05:16 ./usr/bin/hmmconvert -rwxr-xr-x root/root 639312 2015-07-06 05:16 ./usr/bin/hmmemit -rwxr-xr-x root/root 97400 2015-07-06 05:16 ./usr/bin/hmmerfm-exactmatch -rwxr-xr-x root/root 405168 2015-07-06 05:16 ./usr/bin/hmmfetch -rwxr-xr-x root/root 396720 2015-07-06 05:16 ./usr/bin/hmmlogo -rwxr-xr-x root/root 930792 2015-07-06 05:16 ./usr/bin/hmmpgmd -rwxr-xr-x root/root 408776 2015-07-06 05:16 ./usr/bin/hmmpress -rwxr-xr-x root/root 767720 2015-07-06 05:16 ./usr/bin/hmmscan -rwxr-xr-x root/root 772056 2015-07-06 05:16 ./usr/bin/hmmsearch -rwxr-xr-x root/root 428032 2015-07-06 05:16 ./usr/bin/hmmsim -rwxr-xr-x root/root 396960 2015-07-06 05:16 ./usr/bin/hmmstat -rwxr-xr-x root/root 899048 2015-07-06 05:16 ./usr/bin/jackhmmer -rwxr-xr-x root/root 372456 2015-07-06 05:16 ./usr/bin/makehmmerdb -rwxr-xr-x root/root 906984 2015-07-06 05:16 ./usr/bin/nhmmer -rwxr-xr-x root/root 772376 2015-07-06 05:16 ./usr/bin/nhmmscan -rwxr-xr-x root/root 848488 2015-07-06 05:16 ./usr/bin/phmmer drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc/hmmer/ -rw-r--r-- root/root 491 2013-09-12 09:00 ./usr/share/doc/hmmer/README.Debian -rw-r--r-- root/root 1543 2015-07-06 05:16 ./usr/share/doc/hmmer/changelog.Debian.gz -rw-r--r-- root/root 3390 2013-09-12 09:00 ./usr/share/doc/hmmer/copyright drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/man/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/man/man1/ -rw-r--r-- root/root 3560 2015-07-06 05:16 ./usr/share/man/man1/alimask.1.gz -rw-r--r-- root/root 1577 2015-07-06 05:16 ./usr/share/man/man1/hmmalign.1.gz -rw-r--r-- root/root 5121 2015-07-06 05:16 ./usr/share/man/man1/hmmbuild.1.gz -rw-r--r-- root/root 1044 2015-07-06 05:16 ./usr/share/man/man1/hmmconvert.1.gz -rw-r--r-- root/root 2272 2015-07-06 05:16 ./usr/share/man/man1/hmmemit.1.gz -rw-r--r-- root/root 2234 2015-07-06 05:16 ./usr/share/man/man1/hmmer.1.gz -rw-r--r-- root/root 1768 2015-07-06 05:16 ./usr/share/man/man1/hmmfetch.1.gz -rw-r--r-- root/root 1146 2015-07-06 05:16 ./usr/share/man/man1/hmmlogo.1.gz -rw-r--r-- root/root 2312 2015-07-06 05:16 ./usr/share/man/man1/hmmpgmd.1.gz -rw-r--r-- root/root 997 2015-07-06 05:16 ./usr/share/man/man1/hmmpress.1.gz -rw-r--r-- root/root 4559 2015-07-06 05:16 ./usr/share/man/man1/hmmscan.1.gz -rw-r--r-- root/root 4482 2015-07-06 05:16 ./usr/share/man/man1/hmmsearch.1.gz -rw-r--r-- root/root 5264 2015-07-06 05:16 ./usr/share/man/man1/hmmsim.1.gz -rw-r--r-- root/root 1419 2015-07-06 05:16 ./usr/share/man/man1/hmmstat.1.gz -rw-r--r-- root/root 7695 2015-07-06 05:16 ./usr/share/man/man1/jackhmmer.1.gz -rw-r--r-- root/root 1843 2015-07-06 05:16 ./usr/share/man/man1/makehmmerdb.1.gz -rw-r--r-- root/root 6398 2015-07-06 05:16 ./usr/share/man/man1/nhmmer.1.gz -rw-r--r-- root/root 4845 2015-07-06 05:16 ./usr/share/man/man1/nhmmscan.1.gz -rw-r--r-- root/root 4907 2015-07-06 05:16 ./usr/share/man/man1/phmmer.1.gz hmmer-doc_3.1b2-1_all.deb ───────────────────────── new debian package, version 2.0. size 993030 bytes: control archive= 1646 bytes. 946 bytes, 22 lines control 2247 bytes, 29 lines md5sums Package: hmmer-doc Source: hmmer Version: 3.1b2-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5741 Recommends: hmmer (>= 3.1b2-1), evince | pdf-viewer Section: doc Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (docs) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains documents and example files for the hmmer package. drwxr-xr-x root/root 0 2015-07-06 05:16 ./ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc-base/ -rw-r--r-- root/root 576 2013-09-12 09:00 ./usr/share/doc-base/hmmer drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc/hmmer-doc/ -rw-r--r-- root/root 500281 2015-03-04 01:49 ./usr/share/doc/hmmer-doc/Userguide.pdf.gz -rw-r--r-- root/root 1545 2015-07-06 05:16 ./usr/share/doc/hmmer-doc/changelog.Debian.gz -rw-r--r-- root/root 3390 2013-09-12 09:00 ./usr/share/doc/hmmer-doc/copyright drwxr-xr-x root/root 0 2015-07-06 05:16 ./usr/share/doc/hmmer-doc/tutorial/ -rw-r--r-- root/root 2 2015-02-26 12:26 ./usr/share/doc/hmmer-doc/tutorial/.dropbox.attr -rw-r--r-- root/root 15586 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/7LESS_DROME -rw-r--r-- root/root 183 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/HBB_HUMAN -rw-r--r-- root/root 14842 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm -rw-r--r-- root/root 7943 2015-07-06 05:15 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3f -rw-r--r-- root/root 168 2015-07-06 05:15 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3i -rw-r--r-- root/root 5557 2015-07-06 05:15 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3m -rw-r--r-- root/root 13016 2015-07-06 05:15 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3p -rw-r--r-- root/root 6960 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.out -rw-r--r-- root/root 2491467 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.sto -rw-r--r-- root/root 121484 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/Pkinase.hmm -rw-r--r-- root/root 94724 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/Pkinase.sto -rw-r--r-- root/root 335532 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/dna_target.fa -rw-r--r-- root/root 41100 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.hmm -rw-r--r-- root/root 7518 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.out -rw-r--r-- root/root 29746 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.sto -rw-r--r-- root/root 70298 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.hmm -rw-r--r-- root/root 1575896 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.out -rw-r--r-- root/root 863 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.sto -rw-r--r-- root/root 7210 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins45.fa -rw-r--r-- root/root 232394 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam -rw-r--r-- root/root 54792 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3f -rw-r--r-- root/root 247 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3i -rw-r--r-- root/root 96927 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3m -rw-r--r-- root/root 113765 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3p ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 294704 Build-Time: 192 Distribution: wily-proposed Host Architecture: amd64 Install-Time: 10 Job: hmmer_3.1b2-1.dsc Machine Architecture: amd64 Package: hmmer Package-Time: 202 Source-Version: 3.1b2-1 Space: 294704 Status: successful Version: 3.1b2-1 ──────────────────────────────────────────────────────────────────────────────── Finished at 20150706-0516 Build needed 00:03:22, 294704k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-7623748'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-7623748/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-7623748'] Unmounting chroot for build PACKAGEBUILD-7623748... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-7623748'] Removing build PACKAGEBUILD-7623748