RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-05 3.19.0-37-generic #42~14.04.1-Ubuntu SMP Mon Nov 23 15:13:51 UTC 2015 x86_64 Buildd toolchain package versions: launchpad-buildd_135 python-lpbuildd_135 sbuild_0.65.2-1ubuntu2~ubuntu14.04.1~ppa6 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.04.1 bzr_2.6.0+bzr6593-1ubuntu1.1 dpkg-dev_1.17.5ubuntu5.5 python-debian_0.1.27ubuntu1~ubuntu14.04.1~ppa1. Syncing the system clock with the buildd NTP service... 2 Dec 11:10:43 ntpdate[1652]: adjust time server 10.211.37.1 offset -0.000636 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-8368700', '/home/buildd/filecache-default/8204889cda79fca0b488b979ea0c52fb9d6dbd17'] Unpacking chroot for build PACKAGEBUILD-8368700 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-8368700'] Mounting chroot for build PACKAGEBUILD-8368700 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-8368700', 'deb http://ftpmaster.internal/ubuntu xenial main universe', 'deb http://ftpmaster.internal/ubuntu xenial-security main universe', 'deb http://ftpmaster.internal/ubuntu xenial-updates main universe', 'deb http://ftpmaster.internal/ubuntu xenial-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-8368700 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-8368700', 'amd64'] Updating debian chroot for build PACKAGEBUILD-8368700 Get:1 http://ftpmaster.internal xenial InRelease [218 kB] Get:2 http://ftpmaster.internal xenial-security InRelease [64.4 kB] Get:3 http://ftpmaster.internal xenial-updates InRelease [64.4 kB] Get:4 http://ftpmaster.internal xenial-proposed InRelease [218 kB] Get:5 http://ftpmaster.internal xenial/main amd64 Packages [1450 kB] Get:6 http://ftpmaster.internal xenial/universe amd64 Packages [7033 kB] Get:7 http://ftpmaster.internal xenial/main Translation-en [844 kB] Get:8 http://ftpmaster.internal xenial/universe Translation-en [4722 kB] Get:9 http://ftpmaster.internal xenial-security/main amd64 Packages [28 B] Get:10 http://ftpmaster.internal xenial-security/universe amd64 Packages [28 B] Get:11 http://ftpmaster.internal xenial-security/main Translation-en [28 B] Get:12 http://ftpmaster.internal xenial-security/universe Translation-en [28 B] Get:13 http://ftpmaster.internal xenial-updates/main amd64 Packages [28 B] Get:14 http://ftpmaster.internal xenial-updates/universe amd64 Packages [28 B] Get:15 http://ftpmaster.internal xenial-updates/main Translation-en [28 B] Get:16 http://ftpmaster.internal xenial-updates/universe Translation-en [28 B] Get:17 http://ftpmaster.internal xenial-proposed/main amd64 Packages [79.6 kB] Get:18 http://ftpmaster.internal xenial-proposed/universe amd64 Packages [284 kB] Get:19 http://ftpmaster.internal xenial-proposed/main Translation-en [36.4 kB] Get:20 http://ftpmaster.internal xenial-proposed/universe Translation-en [141 kB] Fetched 15.2 MB in 7s (1911 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'apt-get autoremove' to remove them. The following NEW packages will be installed: libapt-pkg5.0 libisl15 The following packages will be upgraded: advancecomp apt apt-transport-https base-files binutils bsdutils cpp cpp-5 debconf diffutils dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-5 gcc gcc-5 gcc-5-base gnupg gpgv grep hostname init initscripts libapparmor1 libasan2 libatomic1 libaudit-common libaudit1 libblkid1 libcap2 libcap2-bin libcc1-0 libcilkrts5 libcomerr2 libcurl3-gnutls libdbus-1-3 libdebconfclient0 libdpkg-perl libfdisk1 libgcc-5-dev libgcc1 libgcrypt20 libgmp10 libgnutls-deb0-28 libgomp1 libgpg-error0 libgssapi-krb5-2 libidn11 libitm1 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblsan0 libmount1 libmpx0 libpng12-0 libquadmath0 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-5-dev libstdc++6 libsystemd0 libtasn1-6 libtsan0 libubsan0 libudev1 libuuid1 linux-libc-dev lsb-base mount openssl pkg-create-dbgsym systemd systemd-sysv sysv-rc sysvinit-utils tar udev util-linux 89 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 322 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ xenial/main base-files amd64 9.4ubuntu3 [62.0 kB] Get:2 http://ftpmaster.internal/ubuntu/ xenial/main bsdutils amd64 1:2.27.1-1ubuntu3 [51.5 kB] Get:3 http://ftpmaster.internal/ubuntu/ xenial/main diffutils amd64 1:3.3-2 [156 kB] Get:4 http://ftpmaster.internal/ubuntu/ xenial/main dpkg amd64 1.18.3ubuntu1 [2081 kB] Get:5 http://ftpmaster.internal/ubuntu/ xenial/main e2fslibs amd64 1.42.13-1ubuntu1 [188 kB] Get:6 http://ftpmaster.internal/ubuntu/ xenial/main e2fsprogs amd64 1.42.13-1ubuntu1 [771 kB] Get:7 http://ftpmaster.internal/ubuntu/ xenial/main findutils amd64 4.4.2-10 [281 kB] Get:8 http://ftpmaster.internal/ubuntu/ xenial-proposed/main grep amd64 2.22-1 [149 kB] Get:9 http://ftpmaster.internal/ubuntu/ xenial/main hostname amd64 3.16ubuntu2 [11.5 kB] Get:10 http://ftpmaster.internal/ubuntu/ xenial/main init amd64 1.24ubuntu2 [3966 B] Get:11 http://ftpmaster.internal/ubuntu/ xenial/main libsmartcols1 amd64 2.27.1-1ubuntu3 [62.3 kB] Get:12 http://ftpmaster.internal/ubuntu/ xenial/main libuuid1 amd64 2.27.1-1ubuntu3 [14.7 kB] Get:13 http://ftpmaster.internal/ubuntu/ xenial/main libblkid1 amd64 2.27.1-1ubuntu3 [107 kB] Get:14 http://ftpmaster.internal/ubuntu/ xenial/main libfdisk1 amd64 2.27.1-1ubuntu3 [139 kB] Get:15 http://ftpmaster.internal/ubuntu/ xenial/main debconf all 1.5.58ubuntu1 [136 kB] Get:16 http://ftpmaster.internal/ubuntu/ xenial/main sysvinit-utils amd64 2.88dsf-59.2ubuntu3 [25.7 kB] Get:17 http://ftpmaster.internal/ubuntu/ xenial/main sysv-rc all 2.88dsf-59.2ubuntu3 [36.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ xenial/main initscripts amd64 2.88dsf-59.2ubuntu3 [24.8 kB] Get:19 http://ftpmaster.internal/ubuntu/ xenial/main util-linux amd64 2.27.1-1ubuntu3 [847 kB] Get:20 http://ftpmaster.internal/ubuntu/ xenial/main libudev1 amd64 228-2ubuntu1 [56.4 kB] Get:21 http://ftpmaster.internal/ubuntu/ xenial/main udev amd64 228-2ubuntu1 [980 kB] Get:22 http://ftpmaster.internal/ubuntu/ xenial/main libsystemd0 amd64 228-2ubuntu1 [203 kB] Get:23 http://ftpmaster.internal/ubuntu/ xenial/main systemd amd64 228-2ubuntu1 [3491 kB] Get:24 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libselinux1 amd64 2.4-3 [56.0 kB] Get:25 http://ftpmaster.internal/ubuntu/ xenial/main libapparmor1 amd64 2.10-0ubuntu8 [29.1 kB] Get:26 http://ftpmaster.internal/ubuntu/ xenial/main libaudit-common all 1:2.4.4-4ubuntu1 [3892 B] Get:27 http://ftpmaster.internal/ubuntu/ xenial/main libaudit1 amd64 1:2.4.4-4ubuntu1 [36.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ xenial/main libcap2 amd64 1:2.24-12 [12.9 kB] Get:29 http://ftpmaster.internal/ubuntu/ xenial/main libmount1 amd64 2.27.1-1ubuntu3 [114 kB] Get:30 http://ftpmaster.internal/ubuntu/ xenial/main libcap2-bin amd64 1:2.24-12 [20.2 kB] Get:31 http://ftpmaster.internal/ubuntu/ xenial/main lsb-base all 9.20150917ubuntu1 [13.4 kB] Get:32 http://ftpmaster.internal/ubuntu/ xenial/main mount amd64 2.27.1-1ubuntu3 [121 kB] Get:33 http://ftpmaster.internal/ubuntu/ xenial/main tar amd64 1.28-2.1 [209 kB] Get:34 http://ftpmaster.internal/ubuntu/ xenial/main libgomp1 amd64 5.2.1-27ubuntu1 [55.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ xenial/main libitm1 amd64 5.2.1-27ubuntu1 [27.4 kB] Get:36 http://ftpmaster.internal/ubuntu/ xenial/main libatomic1 amd64 5.2.1-27ubuntu1 [8906 B] Get:37 http://ftpmaster.internal/ubuntu/ xenial/main libasan2 amd64 5.2.1-27ubuntu1 [269 kB] Get:38 http://ftpmaster.internal/ubuntu/ xenial/main liblsan0 amd64 5.2.1-27ubuntu1 [109 kB] Get:39 http://ftpmaster.internal/ubuntu/ xenial/main libtsan0 amd64 5.2.1-27ubuntu1 [249 kB] Get:40 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5-base amd64 5.2.1-27ubuntu1 [17.0 kB] Get:41 http://ftpmaster.internal/ubuntu/ xenial/main libgcc1 amd64 1:5.2.1-27ubuntu1 [38.8 kB] Get:42 http://ftpmaster.internal/ubuntu/ xenial/main libubsan0 amd64 5.2.1-27ubuntu1 [100 kB] Get:43 http://ftpmaster.internal/ubuntu/ xenial/main libcilkrts5 amd64 5.2.1-27ubuntu1 [40.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ xenial/main libmpx0 amd64 5.2.1-27ubuntu1 [9738 B] Get:45 http://ftpmaster.internal/ubuntu/ xenial/main libquadmath0 amd64 5.2.1-27ubuntu1 [131 kB] Get:46 http://ftpmaster.internal/ubuntu/ xenial/main libisl15 amd64 0.15-3 [514 kB] Get:47 http://ftpmaster.internal/ubuntu/ xenial/main cpp-5 amd64 5.2.1-27ubuntu1 [26.4 MB] Get:48 http://ftpmaster.internal/ubuntu/ xenial/main libcc1-0 amd64 5.2.1-27ubuntu1 [30.9 kB] Get:49 http://ftpmaster.internal/ubuntu/ xenial/main binutils amd64 2.25.90.20151125-2ubuntu1 [2310 kB] Get:50 http://ftpmaster.internal/ubuntu/ xenial/main g++-5 amd64 5.2.1-27ubuntu1 [28.1 MB] Get:51 http://ftpmaster.internal/ubuntu/ xenial/main gcc-5 amd64 5.2.1-27ubuntu1 [26.6 MB] Get:52 http://ftpmaster.internal/ubuntu/ xenial/main libgcc-5-dev amd64 5.2.1-27ubuntu1 [2230 kB] Get:53 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++-5-dev amd64 5.2.1-27ubuntu1 [1423 kB] Get:54 http://ftpmaster.internal/ubuntu/ xenial/main libstdc++6 amd64 5.2.1-27ubuntu1 [393 kB] Get:55 http://ftpmaster.internal/ubuntu/ xenial/main libgmp10 amd64 2:6.1.0+dfsg-2 [240 kB] Get:56 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libapt-pkg5.0 amd64 1.1.3 [676 kB] Get:57 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt amd64 1.1.3 [961 kB] Get:58 http://ftpmaster.internal/ubuntu/ xenial/main gpgv amd64 1.4.19-6ubuntu1 [165 kB] Get:59 http://ftpmaster.internal/ubuntu/ xenial/main gnupg amd64 1.4.19-6ubuntu1 [626 kB] Get:60 http://ftpmaster.internal/ubuntu/ xenial/main systemd-sysv amd64 228-2ubuntu1 [14.9 kB] Get:61 http://ftpmaster.internal/ubuntu/ xenial/main libcomerr2 amd64 1.42.13-1ubuntu1 [65.7 kB] Get:62 http://ftpmaster.internal/ubuntu/ xenial/main libdebconfclient0 amd64 0.198ubuntu1 [6368 B] Get:63 http://ftpmaster.internal/ubuntu/ xenial/main libgpg-error0 amd64 1.20-1 [32.8 kB] Get:64 http://ftpmaster.internal/ubuntu/ xenial/main libgcrypt20 amd64 1.6.4-3 [336 kB] Get:65 http://ftpmaster.internal/ubuntu/ xenial/main libsepol1 amd64 2.4-2 [186 kB] Get:66 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage-common all 2.4-3 [6744 B] Get:67 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsemanage1 amd64 2.4-3 [79.3 kB] Get:68 http://ftpmaster.internal/ubuntu/ xenial/main libss2 amd64 1.42.13-1ubuntu1 [70.0 kB] Get:69 http://ftpmaster.internal/ubuntu/ xenial/main libtasn1-6 amd64 4.7-2 [43.1 kB] Get:70 http://ftpmaster.internal/ubuntu/ xenial/main libgnutls-deb0-28 amd64 3.3.18-1ubuntu1 [520 kB] Get:71 http://ftpmaster.internal/ubuntu/ xenial/main libpng12-0 amd64 1.2.54-1 [116 kB] Get:72 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libsqlite3-0 amd64 3.9.2-1 [395 kB] Get:73 http://ftpmaster.internal/ubuntu/ xenial/main libssl1.0.0 amd64 1.0.2d-0ubuntu2 [1079 kB] Get:74 http://ftpmaster.internal/ubuntu/ xenial/main libgssapi-krb5-2 amd64 1.13.2+dfsg-4 [120 kB] Get:75 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5-3 amd64 1.13.2+dfsg-4 [274 kB] Get:76 http://ftpmaster.internal/ubuntu/ xenial/main libkrb5support0 amd64 1.13.2+dfsg-4 [30.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ xenial/main libk5crypto3 amd64 1.13.2+dfsg-4 [81.3 kB] Get:78 http://ftpmaster.internal/ubuntu/ xenial-proposed/main libkeyutils1 amd64 1.5.9-8 [9824 B] Get:79 http://ftpmaster.internal/ubuntu/ xenial/main libidn11 amd64 1.32-3ubuntu1 [45.5 kB] Get:80 http://ftpmaster.internal/ubuntu/ xenial/main libcurl3-gnutls amd64 7.45.0-1ubuntu1 [183 kB] Get:81 http://ftpmaster.internal/ubuntu/ xenial-proposed/main apt-transport-https amd64 1.1.3 [25.3 kB] Get:82 http://ftpmaster.internal/ubuntu/ xenial/main libdbus-1-3 amd64 1.10.4-1ubuntu2 [161 kB] Get:83 http://ftpmaster.internal/ubuntu/ xenial/main openssl amd64 1.0.2d-0ubuntu2 [511 kB] Get:84 http://ftpmaster.internal/ubuntu/ xenial/main advancecomp amd64 1.20-1 [160 kB] Get:85 http://ftpmaster.internal/ubuntu/ xenial/main cpp amd64 4:5.2.1-13ubuntu8 [27.5 kB] Get:86 http://ftpmaster.internal/ubuntu/ xenial/main dpkg-dev all 1.18.3ubuntu1 [583 kB] Get:87 http://ftpmaster.internal/ubuntu/ xenial/main libdpkg-perl all 1.18.3ubuntu1 [195 kB] Get:88 http://ftpmaster.internal/ubuntu/ xenial/main gcc amd64 4:5.2.1-13ubuntu8 [5168 B] Get:89 http://ftpmaster.internal/ubuntu/ xenial/main g++ amd64 4:5.2.1-13ubuntu8 [1498 B] Get:90 http://ftpmaster.internal/ubuntu/ xenial-proposed/main linux-libc-dev amd64 4.3.0-0.9 [814 kB] Get:91 http://ftpmaster.internal/ubuntu/ xenial/main pkg-create-dbgsym all 0.70 [9046 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 35s (3095 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11690 files and directories currently installed.) Preparing to unpack .../base-files_9.4ubuntu3_amd64.deb ... Unpacking base-files (9.4ubuntu3) over (7.2ubuntu11) ... Setting up base-files (9.4ubuntu3) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Updating /etc/profile to current default. Updating /etc/nsswitch.conf to current default. Updating /root/.profile to current default. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11692 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.27.1-1ubuntu3_amd64.deb ... Unpacking bsdutils (1:2.27.1-1ubuntu3) over (1:2.26.2-6ubuntu3) ... Setting up bsdutils (1:2.27.1-1ubuntu3) ... (Reading database ... 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Preparing to unpack .../libdpkg-perl_1.18.3ubuntu1_all.deb ... Unpacking libdpkg-perl (1.18.3ubuntu1) over (1.18.2ubuntu5) ... Preparing to unpack .../gcc_4%3a5.2.1-13ubuntu8_amd64.deb ... Removing old gcc doc directory. Unpacking gcc (4:5.2.1-13ubuntu8) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../g++_4%3a5.2.1-13ubuntu8_amd64.deb ... Unpacking g++ (4:5.2.1-13ubuntu8) over (4:5.2.1-3ubuntu1) ... Preparing to unpack .../linux-libc-dev_4.3.0-0.9_amd64.deb ... Unpacking linux-libc-dev:amd64 (4.3.0-0.9) over (4.2.0-16.19) ... Preparing to unpack .../pkg-create-dbgsym_0.70_all.deb ... Unpacking pkg-create-dbgsym (0.70) over (0.69) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up udev (228-2ubuntu1) ... Installing new version of config file /etc/init.d/udev ... addgroup: The group `input' already exists as a system group. Exiting. virtio network devices detected, disabling predictable interface names in /etc/systemd/network/50-virtio-kernel-names.link Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of restart. Setting up libgomp1:amd64 (5.2.1-27ubuntu1) ... Setting up libitm1:amd64 (5.2.1-27ubuntu1) ... Setting up libatomic1:amd64 (5.2.1-27ubuntu1) ... Setting up libasan2:amd64 (5.2.1-27ubuntu1) ... Setting up liblsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libtsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libubsan0:amd64 (5.2.1-27ubuntu1) ... Setting up libcilkrts5:amd64 (5.2.1-27ubuntu1) ... Setting up libmpx0:amd64 (5.2.1-27ubuntu1) ... Setting up libquadmath0:amd64 (5.2.1-27ubuntu1) ... Setting up libgmp10:amd64 (2:6.1.0+dfsg-2) ... Setting up libisl15:amd64 (0.15-3) ... Setting up cpp-5 (5.2.1-27ubuntu1) ... Setting up libcc1-0:amd64 (5.2.1-27ubuntu1) ... Setting up binutils (2.25.90.20151125-2ubuntu1) ... Setting up libgcc-5-dev:amd64 (5.2.1-27ubuntu1) ... Setting up gcc-5 (5.2.1-27ubuntu1) ... Setting up libstdc++-5-dev:amd64 (5.2.1-27ubuntu1) ... Setting up g++-5 (5.2.1-27ubuntu1) ... Setting up apt (1.1.3) ... Installing new version of config file /etc/apt/apt.conf.d/01-vendor-ubuntu ... Installing new version of config file /etc/apt/apt.conf.d/01autoremove ... Installing new version of config file /etc/cron.daily/apt ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... usermod: no changes Setting up libtasn1-6:amd64 (4.7-2) ... Setting up libgnutls-deb0-28:amd64 (3.3.18-1ubuntu1) ... Setting up libpng12-0:amd64 (1.2.54-1) ... Setting up libsqlite3-0:amd64 (3.9.2-1) ... Setting up libssl1.0.0:amd64 (1.0.2d-0ubuntu2) ... Setting up libkrb5support0:amd64 (1.13.2+dfsg-4) ... Setting up libk5crypto3:amd64 (1.13.2+dfsg-4) ... Setting up libkeyutils1:amd64 (1.5.9-8) ... Setting up libkrb5-3:amd64 (1.13.2+dfsg-4) ... Setting up libgssapi-krb5-2:amd64 (1.13.2+dfsg-4) ... Setting up libidn11:amd64 (1.32-3ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.45.0-1ubuntu1) ... Setting up apt-transport-https (1.1.3) ... Setting up libdbus-1-3:amd64 (1.10.4-1ubuntu2) ... Setting up openssl (1.0.2d-0ubuntu2) ... Setting up advancecomp (1.20-1) ... Setting up cpp (4:5.2.1-13ubuntu8) ... Setting up libdpkg-perl (1.18.3ubuntu1) ... Setting up dpkg-dev (1.18.3ubuntu1) ... Setting up gcc (4:5.2.1-13ubuntu8) ... Setting up g++ (4:5.2.1-13ubuntu8) ... Setting up linux-libc-dev:amd64 (4.3.0-0.9) ... Setting up pkg-create-dbgsym (0.70) ... Processing triggers for systemd (228-2ubuntu1) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-8368700', 'amd64', 'xenial-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=xenial-proposed', '--purge=never', '--nolog', '-A', 'hmmer_3.1b2-2.dsc'] Initiating build PACKAGEBUILD-8368700 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 3.19.0-37-generic #42~14.04.1-Ubuntu SMP Mon Nov 23 15:13:51 UTC 2015 x86_64 sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on lgw01-05.buildd ╔══════════════════════════════════════════════════════════════════════════════╗ ║ hmmer 3.1b2-2 (amd64) 02 Dec 2015 11:12 ║ ╚══════════════════════════════════════════════════════════════════════════════╝ Package: hmmer Version: 3.1b2-2 Source Version: 3.1b2-2 Distribution: xenial-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/hmmer-bGI5Yb/hmmer-3.1b2' with '«PKGBUILDDIR»' I: NOTICE: Log filtering will replace 'build/hmmer-bGI5Yb' with '«BUILDDIR»' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-8368700/chroot-autobuild' with '«CHROOT»' ┌──────────────────────────────────────────────────────────────────────────────┐ │ Fetch source files │ └──────────────────────────────────────────────────────────────────────────────┘ Local sources ───────────── hmmer_3.1b2-2.dsc exists in .; copying to chroot Check architectures ─────────────────── Check dependencies ────────────────── Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-n3YNWt/apt_archive/sbuild-build-depends-core-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Sources [208 B] Ign:4 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Sources Get:5 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Packages [524 B] Ign:5 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Sources [208 B] Get:5 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Packages [524 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install core build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 0 B/770 B of archives. After this operation, 0 B of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-core-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-n3YNWt/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11718 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:5.2), g++ (>= 4:5.2), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), autotools-dev dpkg-deb: building package 'sbuild-build-depends-hmmer-dummy' in '/«BUILDDIR»/resolver-y9iXaZ/apt_archive/sbuild-build-depends-hmmer-dummy.deb'. Get:1 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ InRelease Ign:1 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ InRelease Get:2 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Release [2119 B] Get:2 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Release [2119 B] Get:3 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Release.gpg Ign:3 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Release.gpg Get:4 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Sources [427 B] Ign:4 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Sources Get:5 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Packages [686 B] Ign:5 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Packages Get:4 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Sources [427 B] Get:5 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Packages [686 B] Reading package lists... W: The repository 'file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ Release' is not signed. Reading package lists... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Install hmmer build dependencies (apt-based resolver) │ └──────────────────────────────────────────────────────────────────────────────┘ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libapt-pkg4.16 libisl13 udev Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf Suggested packages: wamerican | wordlist whois vacation dh-make gettext-doc groff less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs xml-core libmail-sendmail-perl The following NEW packages will be installed: autotools-dev bsdmainutils debhelper dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasprintf0v5 libcroco3 libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1 libpipeline1 libtimedate-perl libunistring0 libxml2 man-db po-debconf sbuild-build-depends-hmmer-dummy 0 upgraded, 23 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB/14.3 MB of archives. After this operation, 56.4 MB of additional disk space will be used. WARNING: The following packages cannot be authenticated! sbuild-build-depends-hmmer-dummy Authentication warning overridden. Get:1 file:/«BUILDDIR»/resolver-y9iXaZ/apt_archive ./ sbuild-build-depends-hmmer-dummy 0.invalid.0 [934 B] Get:2 http://ftpmaster.internal/ubuntu xenial/main amd64 libasprintf0v5 amd64 0.19.4-1ubuntu3 [6676 B] Get:3 http://ftpmaster.internal/ubuntu xenial/main amd64 groff-base amd64 1.22.3-4 [1143 kB] Get:4 http://ftpmaster.internal/ubuntu xenial/main amd64 bsdmainutils amd64 9.0.6ubuntu1 [175 kB] Get:5 http://ftpmaster.internal/ubuntu xenial/main amd64 libpipeline1 amd64 1.4.1-1 [24.9 kB] Get:6 http://ftpmaster.internal/ubuntu xenial/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:7 http://ftpmaster.internal/ubuntu xenial/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:8 http://ftpmaster.internal/ubuntu xenial/main amd64 libmagic1 amd64 1:5.25-2ubuntu1 [216 kB] Get:9 http://ftpmaster.internal/ubuntu xenial/main amd64 file amd64 1:5.25-2ubuntu1 [21.2 kB] Get:10 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext-base amd64 0.19.4-1ubuntu3 [48.3 kB] Get:11 http://ftpmaster.internal/ubuntu xenial/main amd64 libglib2.0-0 amd64 2.47.3-3 [1114 kB] Get:12 http://ftpmaster.internal/ubuntu xenial/main amd64 libicu55 amd64 55.1-6ubuntu1 [7643 kB] Get:13 http://ftpmaster.internal/ubuntu xenial/main amd64 libxml2 amd64 2.9.2+zdfsg1-4ubuntu1 [695 kB] Get:14 http://ftpmaster.internal/ubuntu xenial/main amd64 autotools-dev all 20150820.1 [39.8 kB] Get:15 http://ftpmaster.internal/ubuntu xenial/main amd64 libcroco3 amd64 0.6.9-1 [82.0 kB] Get:16 http://ftpmaster.internal/ubuntu xenial/main amd64 gettext amd64 0.19.4-1ubuntu3 [857 kB] Get:17 http://ftpmaster.internal/ubuntu xenial/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:18 http://ftpmaster.internal/ubuntu xenial/main amd64 po-debconf all 1.0.18 [234 kB] Get:19 http://ftpmaster.internal/ubuntu xenial/main amd64 libarchive-zip-perl all 1.53-1 [87.0 kB] Get:20 http://ftpmaster.internal/ubuntu xenial/main amd64 libfile-stripnondeterminism-perl all 0.014-1 [10.1 kB] Get:21 http://ftpmaster.internal/ubuntu xenial/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:22 http://ftpmaster.internal/ubuntu xenial/main amd64 dh-strip-nondeterminism all 0.014-1 [5596 B] Get:23 http://ftpmaster.internal/ubuntu xenial/main amd64 debhelper all 9.20151126ubuntu1 [741 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 0s (36.7 MB/s) Selecting previously unselected package libasprintf0v5:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11718 files and directories currently installed.) Preparing to unpack .../libasprintf0v5_0.19.4-1ubuntu3_amd64.deb ... Unpacking libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Selecting previously unselected package groff-base. Preparing to unpack .../groff-base_1.22.3-4_amd64.deb ... Unpacking groff-base (1.22.3-4) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../bsdmainutils_9.0.6ubuntu1_amd64.deb ... Unpacking bsdmainutils (9.0.6ubuntu1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../libpipeline1_1.4.1-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.4.1-1) ... Selecting previously unselected package man-db. Preparing to unpack .../man-db_2.7.5-1_amd64.deb ... Unpacking man-db (2.7.5-1) ... Selecting previously unselected package libunistring0:amd64. Preparing to unpack .../libunistring0_0.9.3-5.2ubuntu1_amd64.deb ... Unpacking libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../libmagic1_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.25-2ubuntu1) ... Selecting previously unselected package file. Preparing to unpack .../file_1%3a5.25-2ubuntu1_amd64.deb ... Unpacking file (1:5.25-2ubuntu1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../gettext-base_0.19.4-1ubuntu3_amd64.deb ... Unpacking gettext-base (0.19.4-1ubuntu3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../libglib2.0-0_2.47.3-3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.47.3-3) ... Selecting previously unselected package libicu55:amd64. Preparing to unpack .../libicu55_55.1-6ubuntu1_amd64.deb ... Unpacking libicu55:amd64 (55.1-6ubuntu1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../libxml2_2.9.2+zdfsg1-4ubuntu1_amd64.deb ... Unpacking libxml2:amd64 (2.9.2+zdfsg1-4ubuntu1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../autotools-dev_20150820.1_all.deb ... Unpacking autotools-dev (20150820.1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../libcroco3_0.6.9-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.9-1) ... Selecting previously unselected package gettext. Preparing to unpack .../gettext_0.19.4-1ubuntu3_amd64.deb ... Unpacking gettext (0.19.4-1ubuntu3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. Preparing to unpack .../po-debconf_1.0.18_all.deb ... Unpacking po-debconf (1.0.18) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../libarchive-zip-perl_1.53-1_all.deb ... Unpacking libarchive-zip-perl (1.53-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../libfile-stripnondeterminism-perl_0.014-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (0.014-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../dh-strip-nondeterminism_0.014-1_all.deb ... Unpacking dh-strip-nondeterminism (0.014-1) ... Selecting previously unselected package debhelper. Preparing to unpack .../debhelper_9.20151126ubuntu1_all.deb ... Unpacking debhelper (9.20151126ubuntu1) ... Selecting previously unselected package sbuild-build-depends-hmmer-dummy. Preparing to unpack .../sbuild-build-depends-hmmer-dummy.deb ... Unpacking sbuild-build-depends-hmmer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... Setting up libasprintf0v5:amd64 (0.19.4-1ubuntu3) ... Setting up groff-base (1.22.3-4) ... Setting up bsdmainutils (9.0.6ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libpipeline1:amd64 (1.4.1-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libmagic1:amd64 (1:5.25-2ubuntu1) ... Setting up file (1:5.25-2ubuntu1) ... Setting up gettext-base (0.19.4-1ubuntu3) ... Setting up libglib2.0-0:amd64 (2.47.3-3) ... No schema files found: doing nothing. Setting up libicu55:amd64 (55.1-6ubuntu1) ... Setting up libxml2:amd64 (2.9.2+zdfsg1-4ubuntu1) ... Setting up autotools-dev (20150820.1) ... Setting up libcroco3:amd64 (0.6.9-1) ... Setting up gettext (0.19.4-1ubuntu3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up po-debconf (1.0.18) ... Setting up libarchive-zip-perl (1.53-1) ... Setting up libfile-stripnondeterminism-perl (0.014-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up dh-strip-nondeterminism (0.014-1) ... Setting up debhelper (9.20151126ubuntu1) ... Setting up sbuild-build-depends-hmmer-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.21-0ubuntu4) ... ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build environment │ └──────────────────────────────────────────────────────────────────────────────┘ Kernel: Linux 3.19.0-37-generic amd64 (x86_64) Toolchain package versions: binutils_2.25.90.20151125-2ubuntu1 dpkg-dev_1.18.3ubuntu1 g++-5_5.2.1-27ubuntu1 gcc-5_5.2.1-27ubuntu1 libc6-dev_2.21-0ubuntu4 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 linux-libc-dev_4.3.0-0.9 Package versions: adduser_3.113+nmu3ubuntu4 advancecomp_1.20-1 apt_1.1.3 apt-transport-https_1.1.3 autotools-dev_20150820.1 base-files_9.4ubuntu3 base-passwd_3.5.38 bash_4.3-14ubuntu1 binutils_2.25.90.20151125-2ubuntu1 bsdmainutils_9.0.6ubuntu1 bsdutils_1:2.27.1-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8 ca-certificates_20150426ubuntu1 coreutils_8.23-4ubuntu2 cpp_4:5.2.1-13ubuntu8 cpp-5_5.2.1-27ubuntu1 dash_0.5.7-4ubuntu2 debconf_1.5.58ubuntu1 debhelper_9.20151126ubuntu1 debianutils_4.5.1 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.99-1ubuntu1 dpkg_1.18.3ubuntu1 dpkg-dev_1.18.3ubuntu1 e2fslibs_1.42.13-1ubuntu1 e2fsprogs_1.42.13-1ubuntu1 fakeroot_1.20.2-1ubuntu1 file_1:5.25-2ubuntu1 findutils_4.4.2-10 g++_4:5.2.1-13ubuntu8 g++-5_5.2.1-27ubuntu1 gcc_4:5.2.1-13ubuntu8 gcc-5_5.2.1-27ubuntu1 gcc-5-base_5.2.1-27ubuntu1 gettext_0.19.4-1ubuntu3 gettext-base_0.19.4-1ubuntu3 gnupg_1.4.19-6ubuntu1 gpgv_1.4.19-6ubuntu1 grep_2.22-1 groff-base_1.22.3-4 gzip_1.6-4ubuntu1 hostname_3.16ubuntu2 init_1.24ubuntu2 initscripts_2.88dsf-59.2ubuntu3 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-2 libapparmor1_2.10-0ubuntu8 libapt-pkg4.16_1.0.10.2ubuntu1 libapt-pkg5.0_1.1.3 libarchive-zip-perl_1.53-1 libasan2_5.2.1-27ubuntu1 libasn1-8-heimdal_1.6~rc2+dfsg-10ubuntu1 libasprintf0v5_0.19.4-1ubuntu3 libatomic1_5.2.1-27ubuntu1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4ubuntu1 libaudit1_1:2.4.4-4ubuntu1 libblkid1_2.27.1-1ubuntu3 libbz2-1.0_1.0.6-8 libc-bin_2.21-0ubuntu4 libc-dev-bin_2.21-0ubuntu4 libc6_2.21-0ubuntu4 libc6-dev_2.21-0ubuntu4 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-27ubuntu1 libcilkrts5_5.2.1-27ubuntu1 libcomerr2_1.42.13-1ubuntu1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5ubuntu2 libcurl3-gnutls_7.45.0-1ubuntu1 libdb5.3_5.3.28-11 libdbus-1-3_1.10.4-1ubuntu2 libdebconfclient0_0.198ubuntu1 libdevmapper1.02.1_2:1.02.99-1ubuntu1 libdpkg-perl_1.18.3ubuntu1 libfakeroot_1.20.2-1ubuntu1 libfdisk1_2.27.1-1ubuntu3 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgcc-5-dev_5.2.1-27ubuntu1 libgcc1_1:5.2.1-27ubuntu1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.47.3-3 libgmp10_2:6.1.0+dfsg-2 libgnutls-deb0-28_3.3.18-1ubuntu1 libgomp1_5.2.1-27ubuntu1 libgpg-error0_1.20-1 libgssapi-krb5-2_1.13.2+dfsg-4 libgssapi3-heimdal_1.6~rc2+dfsg-10ubuntu1 libhcrypto4-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimbase1-heimdal_1.6~rc2+dfsg-10ubuntu1 libheimntlm0-heimdal_1.6~rc2+dfsg-10ubuntu1 libhogweed4_3.1.1-4 libhx509-5-heimdal_1.6~rc2+dfsg-10ubuntu1 libicu55_55.1-6ubuntu1 libidn11_1.32-3ubuntu1 libisl13_0.14-2 libisl15_0.15-3 libitm1_5.2.1-27ubuntu1 libk5crypto3_1.13.2+dfsg-4 libkeyutils1_1.5.9-8 libkmod2_21-1ubuntu1 libkrb5-26-heimdal_1.6~rc2+dfsg-10ubuntu1 libkrb5-3_1.13.2+dfsg-4 libkrb5support0_1.13.2+dfsg-4 libldap-2.4-2_2.4.41+dfsg-1ubuntu2 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_5.2.1-27ubuntu1 liblzma5_5.1.1alpha+20120614-2ubuntu2 libmagic1_1:5.25-2ubuntu1 libmount1_2.27.1-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libmpx0_5.2.1-27ubuntu1 libncurses5_5.9+20150516-2ubuntu1 libncursesw5_5.9+20150516-2ubuntu1 libnettle6_3.1.1-4 libnih-dbus1_1.0.3-4ubuntu27 libnih1_1.0.3-4ubuntu27 libp11-kit0_0.23.1-3 libpam-modules_1.1.8-3.1ubuntu3 libpam-modules-bin_1.1.8-3.1ubuntu3 libpam-runtime_1.1.8-3.1ubuntu3 libpam0g_1.1.8-3.1ubuntu3 libpcre3_2:8.35-7.1ubuntu1 libpipeline1_1.4.1-1 libpng12-0_1.2.54-1 libprocps3_1:3.3.9-1ubuntu8 libquadmath0_5.2.1-27ubuntu1 libreadline6_6.3-8ubuntu1 libroken18-heimdal_1.6~rc2+dfsg-10ubuntu1 librtmp1_2.4+20150115.gita107cef-1build1 libsasl2-2_2.1.26.dfsg1-14 libsasl2-modules-db_2.1.26.dfsg1-14 libseccomp2_2.2.3-2ubuntu1 libselinux1_2.4-3 libsemanage-common_2.4-3 libsemanage1_2.4-3 libsepol1_2.4-2 libslang2_2.3.0-2ubuntu1 libsmartcols1_2.27.1-1ubuntu3 libsqlite3-0_3.9.2-1 libss2_1.42.13-1ubuntu1 libssl1.0.0_1.0.2d-0ubuntu2 libstdc++-5-dev_5.2.1-27ubuntu1 libstdc++6_5.2.1-27ubuntu1 libsystemd0_228-2ubuntu1 libtasn1-6_4.7-2 libtimedate-perl_2.3000-2 libtinfo5_5.9+20150516-2ubuntu1 libtsan0_5.2.1-27ubuntu1 libubsan0_5.2.1-27ubuntu1 libudev1_228-2ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1ubuntu3 libwind0-heimdal_1.6~rc2+dfsg-10ubuntu1 libxml2_2.9.2+zdfsg1-4ubuntu1 linux-libc-dev_4.3.0-0.9 lockfile-progs_0.1.17 login_1:4.1.5.1-1.1ubuntu7 lsb-base_9.20150917ubuntu1 make_4.0-8.2 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mount_2.27.1-1ubuntu3 multiarch-support_2.21-0ubuntu4 ncurses-base_5.9+20150516-2ubuntu1 ncurses-bin_5.9+20150516-2ubuntu1 openssl_1.0.2d-0ubuntu2 optipng_0.7.5-1 passwd_1:4.1.5.1-1.1ubuntu7 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-create-dbgsym_0.70 pkgbinarymangler_122 po-debconf_1.0.18 policyrcd-script-zg2_0.1-2 procps_1:3.3.9-1ubuntu8 readline-common_6.3-8ubuntu1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hmmer-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 systemd_228-2ubuntu1 systemd-sysv_228-2ubuntu1 sysv-rc_2.88dsf-59.2ubuntu3 sysvinit-utils_2.88dsf-59.2ubuntu3 tar_1.28-2.1 tzdata_2015g-1 ubuntu-keyring_2012.05.19 udev_228-2ubuntu1 util-linux_2.27.1-1ubuntu3 xz-utils_5.1.1alpha+20120614-2ubuntu2 zlib1g_1:1.2.8.dfsg-2ubuntu4 ┌──────────────────────────────────────────────────────────────────────────────┐ │ Build │ └──────────────────────────────────────────────────────────────────────────────┘ Unpack source ───────────── gpgv: Signature made Wed Dec 2 07:33:21 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./hmmer_3.1b2-2.dsc dpkg-source: info: extracting hmmer in hmmer-3.1b2 dpkg-source: info: unpacking hmmer_3.1b2.orig.tar.gz dpkg-source: info: unpacking hmmer_3.1b2-2.debian.tar.xz dpkg-source: info: applying debian-changes-3.0-1 dpkg-source: info: applying debian-changes-3.0-2.1 Check disc space ──────────────── Sufficient free space for build User Environment ──────────────── DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/«PKGBUILDDIR» SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /«CHROOT» su buildd -s /bin/sh -c cd '/«PKGBUILDDIR»' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ───────────────── dpkg-buildpackage: source package hmmer dpkg-buildpackage: source version 3.1b2-2 dpkg-buildpackage: source distribution unstable dpkg-source --before-build hmmer-3.1b2 dpkg-buildpackage: host architecture amd64 fakeroot debian/rules clean dh clean --with autotools_dev dh_testdir debian/rules override_dh_auto_clean make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_clean rm -f testsuite/esltmp* rm -f easel/testsuite/esltmp* rm -f tutorial/MADE1.hmm.h3? make[1]: Leaving directory '/«PKGBUILDDIR»' dh_autotools-dev_restoreconfig dh_clean debian/rules build dh build --with autotools_dev dh_testdir dh_autotools-dev_updateconfig debian/rules override_dh_auto_configure make[1]: Entering directory '/«PKGBUILDDIR»' dh_auto_configure -- --enable-threads --enable-sse ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-sse configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: Configuring HMMER for your system. checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu configure: Full HMMER source distribution - using full configuration checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking for a BSD-compatible install... /usr/bin/install -c checking how to run the C preprocessor... gcc -E checking for C compiler vendor... (cached) gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether you have a GNU make... yes, you do; and we assume you will use it! checking for a sed that does not truncate output... /bin/sed checking for gcc option to produce PIC... -fPIC checking whether C compiler accepts -msse2... yes checking compiler support for sse2 cast functions... yes checking whether SSE2 is supported... yes checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes configure: Activating Intel/AMD SSE optimized DP implementation checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for stat... yes checking for fstat... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no configure: creating ./config.status config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating profmark/Makefile config.status: creating src/impl_sse/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/Makefile config.status: creating libdivsufsort/Makefile config.status: creating Makefile config.status: creating src/p7_config.h config.status: creating easel/esl_config.h config.status: creating libdivsufsort/divsufsort.h config.status: linking src/impl_sse to src/impl configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking HMMER configuration: compiler: gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -fPIC host: x86_64-pc-linux-gnu linker: -Wl,-Bsymbolic-functions -Wl,-z,relro libraries: DP implementation: sse make[1]: Leaving directory '/«PKGBUILDDIR»' dh_auto_build make -j1 make[1]: Entering directory '/«PKGBUILDDIR»' SUBDIR easel make[2]: Entering directory '/«PKGBUILDDIR»/easel' CC easel.o CC esl_alphabet.o CC esl_buffer.o CC esl_cluster.o CC esl_composition.o CC esl_dirichlet.o CC esl_distance.o CC esl_dmatrix.o CC esl_exponential.o CC esl_fileparser.o CC esl_gamma.o CC esl_getopts.o CC esl_gev.o CC esl_gumbel.o CC esl_histogram.o CC esl_hmm.o CC esl_hyperexp.o CC esl_keyhash.o CC esl_mem.o CC esl_minimizer.o CC esl_mixgev.o CC esl_mpi.o CC esl_msa.o CC esl_msacluster.o CC esl_msafile.o CC esl_msafile2.o CC esl_msafile_a2m.o CC esl_msafile_afa.o CC esl_msafile_clustal.o CC esl_msafile_phylip.o CC esl_msafile_psiblast.o CC esl_msafile_selex.o CC esl_msafile_stockholm.o CC esl_msashuffle.o CC esl_msaweight.o CC esl_normal.o CC esl_paml.o CC esl_random.o CC esl_randomseq.o CC esl_ratematrix.o CC esl_recorder.o CC esl_regexp.o CC esl_rootfinder.o CC esl_scorematrix.o CC esl_sq.o CC esl_sqio.o CC esl_sqio_ascii.o CC esl_sqio_ncbi.o CC esl_sse.o CC esl_ssi.o CC esl_stack.o CC esl_stats.o CC esl_stopwatch.o CC esl_stretchexp.o CC esl_threads.o CC esl_translate.o CC esl_tree.o CC esl_vectorops.o CC esl_vmx.o CC esl_weibull.o CC esl_workqueue.o CC esl_wuss.o AR libeasel.a SUBDIR miniapps make[3]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' CC esl-afetch.o GEN esl-afetch CC esl-alimanip.o GEN esl-alimanip CC esl-alimap.o GEN esl-alimap CC esl-alimask.o GEN esl-alimask CC esl-alimerge.o GEN esl-alimerge CC esl-alipid.o GEN esl-alipid CC esl-alistat.o GEN esl-alistat CC esl-cluster.o GEN esl-cluster CC esl-compalign.o GEN esl-compalign CC esl-compstruct.o GEN esl-compstruct CC esl-construct.o GEN esl-construct CC esl-histplot.o GEN esl-histplot CC esl-mask.o GEN esl-mask CC esl-reformat.o GEN esl-reformat CC esl-selectn.o GEN esl-selectn CC esl-seqrange.o GEN esl-seqrange CC esl-seqstat.o GEN esl-seqstat CC esl-sfetch.o GEN esl-sfetch CC esl-shuffle.o GEN esl-shuffle CC esl-ssdraw.o GEN esl-ssdraw CC esl-stranslate.o GEN esl-stranslate CC esl-weight.o GEN esl-weight make[3]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' make[2]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR libdivsufsort make[2]: Entering directory '/«PKGBUILDDIR»/libdivsufsort' CC divsufsort.o AR libdivsufsort.a make[2]: Leaving directory '/«PKGBUILDDIR»/libdivsufsort' SUBDIR src make[2]: Entering directory '/«PKGBUILDDIR»/src' CC alimask.o CC build.o CC cachedb.o CC emit.o CC errors.o CC evalues.o CC eweight.o CC generic_decoding.o CC generic_fwdback.o CC generic_fwdback_chk.o CC generic_fwdback_banded.o CC generic_null2.o CC generic_msv.o CC generic_optacc.o CC generic_stotrace.o CC generic_viterbi.o CC generic_vtrace.o CC h2_io.o CC heatmap.o CC hmmlogo.o CC hmmdmstr.o In file included from /usr/include/string.h:639:0, from hmmdmstr.c:13: In function 'strncat', inlined from 'clientside_loop' at hmmdmstr.c:1405:5: /usr/include/x86_64-linux-gnu/bits/string3.h:156:10: warning: call to __builtin___strncat_chk might overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ CC hmmdwrkr.o CC hmmdutils.o CC hmmer.o CC logsum.o CC modelconfig.o CC modelstats.o CC mpisupport.o CC seqmodel.o CC tracealign.o CC p7_alidisplay.o CC p7_bg.o CC p7_builder.o CC p7_domaindef.o CC p7_gbands.o CC p7_gmx.o CC p7_gmxb.o CC p7_gmxchk.o CC p7_hmm.o CC p7_hmmcache.o CC p7_hmmfile.o CC p7_hmmwindow.o CC p7_null3.o CC p7_pipeline.o CC p7_prior.o CC p7_profile.o CC p7_spensemble.o CC p7_tophits.o CC p7_trace.o CC p7_scoredata.o CC hmmpgmd2msa.o CC fm_alphabet.o CC fm_general.o CC fm_sse.o CC fm_ssv.o AR libhmmer-src.stamp SUBDIR impl_sse make[3]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' CC decoding.o CC fwdback.o CC io.o CC ssvfilter.o CC msvfilter.o CC null2.o CC optacc.o CC stotrace.o CC vitfilter.o CC p7_omx.o CC p7_oprofile.o CC mpi.o AR libhmmer-impl.stamp make[3]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' GEN alimask CC hmmalign.o GEN hmmalign CC hmmbuild.o GEN hmmbuild CC hmmconvert.o GEN hmmconvert CC hmmemit.o GEN hmmemit CC hmmfetch.o GEN hmmfetch GEN hmmlogo CC hmmpress.o GEN hmmpress CC hmmscan.o GEN hmmscan CC hmmsearch.o GEN hmmsearch CC hmmsim.o GEN hmmsim CC hmmstat.o GEN hmmstat CC jackhmmer.o GEN jackhmmer CC phmmer.o GEN phmmer CC nhmmer.o GEN nhmmer CC nhmmscan.o GEN nhmmscan CC hmmpgmd.o GEN hmmpgmd CC hmmc2.o In file included from /usr/include/string.h:639:0, from hmmc2.c:10: In function 'strncat', inlined from 'main' at hmmc2.c:364:7: /usr/include/x86_64-linux-gnu/bits/string3.h:156:10: warning: call to __builtin___strncat_chk might overflow destination buffer return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest)); ^ GEN hmmc2 CC makehmmerdb.o GEN makehmmerdb CC hmmerfm-exactmatch.o GEN hmmerfm-exactmatch make[2]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR profmark make[2]: Entering directory '/«PKGBUILDDIR»/profmark' CC create-profmark.o GEN create-profmark CC rocplot.o GEN rocplot make[2]: Leaving directory '/«PKGBUILDDIR»/profmark' make[1]: Leaving directory '/«PKGBUILDDIR»' debian/rules override_dh_auto_test make[1]: Entering directory '/«PKGBUILDDIR»' make check make[2]: Entering directory '/«PKGBUILDDIR»' SUBDIR easel make[3]: Entering directory '/«PKGBUILDDIR»/easel' GEN easel_utest GEN esl_alphabet_utest GEN esl_buffer_utest GEN esl_cluster_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_dmatrix_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_getopts_utest GEN esl_gumbel_utest GEN esl_histogram_utest GEN esl_hyperexp_utest GEN esl_keyhash_utest GEN esl_mem_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_random_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_sse_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest SUBDIR miniapps make[4]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' make[3]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR libdivsufsort make[3]: Entering directory '/«PKGBUILDDIR»/libdivsufsort' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/«PKGBUILDDIR»/libdivsufsort' SUBDIR src make[3]: Entering directory '/«PKGBUILDDIR»/src' SUBDIR impl_sse make[4]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' GEN build_utest GEN generic_fwdback_utest GEN generic_fwdback_chk_utest GEN generic_msv_utest GEN generic_stotrace_utest GEN generic_viterbi_utest GEN hmmer_utest GEN logsum_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest CC itest_brute.o GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' GEN decoding_utest GEN fwdback_utest GEN io_utest GEN msvfilter_utest GEN null2_utest GEN optacc_utest GEN stotrace_utest GEN vitfilter_utest make[4]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' make[3]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR easel make[3]: Entering directory '/«PKGBUILDDIR»/easel' SUBDIR miniapps make[4]: Entering directory '/«PKGBUILDDIR»/easel/miniapps' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/«PKGBUILDDIR»/easel/miniapps' SUBDIR testsuite make[4]: Entering directory '/«PKGBUILDDIR»/easel/testsuite' Running Easel test suite... exercise 1 [ alphabet-utest] ... ok. exercise 2 [ buffer-utest] ... ok. exercise 3 [ cluster-utest] ... ok. exercise 4 [ dirichlet-utest] ... ok. exercise 5 [ distance-utest] ... ok. exercise 6 [ dmatrix-utest] ... ok. exercise 7 [ easel-utest] ... ok. exercise 8 [ exponential-utest] ... ok. exercise 9 [ fileparser-utest] ... ok. exercise 10 [ gamma-utest] ... ok. exercise 11 [ getopts-utest] ... ok. exercise 12 [ gumbel-utest] ... ok. exercise 13 [ histogram-utest] ... ok. exercise 14 [ hyperexp-utest] ... ok. exercise 15 [ keyhash-utest] ... ok. exercise 16 [ mem-utest] ... ok. exercise 17 [ msa-utest] ... ok. exercise 18 [ msafile] ... ok. exercise 19 [ msafile2] ... ok. exercise 20 [ msafile-a2m] ... ok. exercise 21 [ msafile-afa] ... ok. exercise 22 [ msafile-clustal] ... ok. exercise 23 [ msafile-phylip] ... ok. exercise 24 [ msafile-psiblast] ... ok. exercise 25 [ msafile-selex] ... ok. exercise 26 [ msafile-stockholm] ... ok. exercise 27 [ msacluster-utest] ... ok. exercise 28 [ msaweight-utest] ... ok. exercise 29 [ random-utest] ... ok. exercise 30 [ randomseq-utest] ... ok. exercise 31 [ ratematrix-utest] ... ok. exercise 32 [ recorder-utest] ... ok. exercise 33 [ regexp-utest] ... ok. exercise 34 [ rootfinder-utest] ... ok. exercise 35 [ scorematrix-utest] ... ok. exercise 36 [ sq-utest] ... ok. exercise 37 [ sqio-utest] ... ok. exercise 38 [ sse-utest] ... ok. exercise 39 [ ssi-utest] ... ok. exercise 40 [ stack-utest] ... ok. exercise 41 [ stats-utest] ... ok. exercise 42 [ stretchexp-utest] ... ok. exercise 43 [ tree-utest] ... ok. exercise 44 [ vectorops-utest] ... ok. exercise 45 [ weibull-utest] ... ok. exercise 46 [ wuss-utest] ... ok. exercise 47 [ e2] ... ok. exercise 48 [ degen-residues] ... ok. exercise 49 [ ncbi-indices] ... ok. exercise 50 [ blank-gf] ... ok. exercise 51 [ esl-afetch] ... ok. exercise 52 [ esl-alimanip] ... ok. exercise 53 [ esl-alimap] ... ok. exercise 54 [ esl-alimask] ... ok. exercise 55 [ esl-alimerge] ... ok. exercise 56 [ esl-alistat] ... ok. exercise 57 [ esl-compalign] ... ok. exercise 58 [ esl-construct] ... ok. exercise 59 [ esl-mask] ... ok. exercise 60 [ esl-seqrange] ... ok. exercise 61 [ esl-shuffle] ... ok. exercise 62 [ esl-ssdraw] ... ok. All 62 exercises at level <= 2 passed. System information: Wed Dec 2 11:14:27 UTC 2015 Linux lgw01-05 3.19.0-37-generic #42~14.04.1-Ubuntu SMP Mon Nov 23 15:13:51 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux make[4]: Leaving directory '/«PKGBUILDDIR»/easel/testsuite' make[3]: Leaving directory '/«PKGBUILDDIR»/easel' SUBDIR testsuite make[3]: Entering directory '/«PKGBUILDDIR»/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ logsum] ... ok. exercise 8 [ modelconfig] ... ok. exercise 9 [ seqmodel] ... ok. exercise 10 [ p7_alidisplay] ... ok. exercise 11 [ p7_bg] ... ok. exercise 12 [ p7_gmx] ... ok. exercise 13 [ p7_hmm] ... ok. exercise 14 [ p7_hmmfile] ... ok. exercise 15 [ p7_profile] ... ok. exercise 16 [ p7_tophits] ... ok. exercise 17 [ p7_trace] ... ok. exercise 18 [ p7_scoredata] ... ok. exercise 19 [ decoding] ... ok. exercise 20 [ fwdback] ... ok. exercise 21 [ io] ... ok. exercise 22 [ msvfilter] ... ok. exercise 23 [ null2] ... ok. exercise 24 [ optacc] ... ok. exercise 25 [ stotrace] ... ok. exercise 26 [ vitfilter] ... ok. exercise 27 [ hmmalign] ... ok. exercise 28 [ hmmalign/-h] ... ok. exercise 29 [ hmmalign/-o] ... ok. exercise 30 [ hmmalign/--mapali] ... ok. exercise 31 [ hmmalign/--trim] ... ok. exercise 32 [ hmmalign/--amino] ... ok. exercise 33 [ hmmalign/--informat] ... ok. exercise 34 [ hmmalign/--outformat] ... ok. exercise 35 [ build] ... ok. exercise 36 [ build/-h] ... ok. exercise 37 [ build/-n] ... ok. exercise 38 [ build/-o] ... ok. exercise 39 [ build/-O] ... ok. exercise 40 [ build/--amino] ... ok. exercise 41 [ build/--dna] ... ok. exercise 42 [ build/--rna] ... ok. exercise 43 [ build/--fast] ... ok. exercise 44 [ build/--hand] ... ok. exercise 45 [ build/--symfrac] ... ok. exercise 46 [ build/--fragthresh] ... ok. exercise 47 [ build/--wpb] ... ok. exercise 48 [ build/--wgsc] ... ok. exercise 49 [ build/--wblosum] ... ok. exercise 50 [ build/--wnone] ... ok. exercise 51 [ build/--wid] ... ok. exercise 52 [ build/--eent] ... ok. exercise 53 [ build/--eclust] ... ok. exercise 54 [ build/--enone] ... ok. exercise 55 [ build/--eset] ... ok. exercise 56 [ build/--ere] ... ok. exercise 57 [ build/--esigma] ... ok. exercise 58 [ build/--eid] ... ok. exercise 59 [ build/--pnone] ... ok. exercise 60 [ build/--plaplace] ... ok. exercise 61 [ build/--EmL] ... ok. exercise 62 [ build/--EmN] ... ok. exercise 63 [ build/--EvL] ... ok. exercise 64 [ build/--EvN] ... ok. exercise 65 [ build/--EfL] ... ok. exercise 66 [ build/--EfN] ... ok. exercise 67 [ build/--Eft] ... ok. exercise 68 [ build/--informat] ... ok. exercise 69 [ build/--seed] ... ok. exercise 70 [ hmmemit] ... ok. exercise 71 [ hmmemit/-h] ... ok. exercise 72 [ hmmemit/-c] ... ok. exercise 73 [ hmmemit/-o] ... ok. exercise 74 [ hmmemit/-p] ... ok. exercise 75 [ hmmemit/-N] ... ok. exercise 76 [ hmmemit/-L] ... ok. exercise 77 [ hmmemit/--local] ... ok. exercise 78 [ hmmemit/--unilocal] ... ok. exercise 79 [ hmmemit/--glocal] ... ok. exercise 80 [ hmmemit/--uniglocal] ... ok. exercise 81 [ search] ... ok. exercise 82 [ search/-h] ... ok. exercise 83 [ search/-o] ... ok. exercise 84 [ search/-A] ... ok. exercise 85 [ search/--tblout] ... ok. exercise 86 [ search/--domtblout] ... ok. exercise 87 [ search/--pfamtblout] ... ok. exercise 88 [ search/--acc] ... ok. exercise 89 [ search/--noali] ... ok. exercise 90 [ search/--notextw] ... ok. exercise 91 [ search/--textw] ... ok. exercise 92 [ search/-E] ... ok. exercise 93 [ search/-T] ... ok. exercise 94 [ search/--domE] ... ok. exercise 95 [ search/--domT] ... ok. exercise 96 [ search/--incE] ... ok. exercise 97 [ search/--incT] ... ok. exercise 98 [ search/--incdomE] ... ok. exercise 99 [ search/--incdomT] ... ok. exercise 100 [ search/--cut_ga] ... ok. exercise 101 [ search/--cut_nc] ... ok. exercise 102 [ search/--cut_tc] ... ok. exercise 103 [ search/--max] ... ok. exercise 104 [ search/--F1] ... ok. exercise 105 [ search/--F2] ... ok. exercise 106 [ search/--F3] ... ok. exercise 107 [ search/--nobias] ... ok. exercise 108 [ search/--nonull2] ... ok. exercise 109 [ search/-Z] ... ok. exercise 110 [ search/--domZ] ... ok. exercise 111 [ search/--seed] ... ok. exercise 112 [ search/--tformat] ... ok. exercise 113 [ jackhmmer] ... ok. exercise 114 [ j/-h] ... ok. exercise 115 [ j/-N] ... ok. exercise 116 [ j/-o] ... ok. exercise 117 [ j/-A] ... ok. exercise 118 [ j/--tblout] ... ok. exercise 119 [ j/--domtblout] ... ok. exercise 120 [ j/--chkhmm] ... ok. exercise 121 [ j/--chkali] ... ok. exercise 122 [ j/--acc] ... ok. exercise 123 [ j/--noali] ... ok. exercise 124 [ j/--notextw] ... ok. exercise 125 [ j/--textw] ... ok. exercise 126 [ j/--popen] ... ok. exercise 127 [ j/--pextend] ... ok. exercise 128 [ j/--mxfile] ... ok. exercise 129 [ j/-E] ... ok. exercise 130 [ j/-T] ... ok. exercise 131 [ j/--domE] ... ok. exercise 132 [ j/--domT] ... ok. exercise 133 [ j/--incE] ... ok. exercise 134 [ j/--incT] ... ok. exercise 135 [ j/--incdomE] ... ok. exercise 136 [ j/--incdomT] ... ok. exercise 137 [ j/--max] ... ok. exercise 138 [ j/--F1] ... ok. exercise 139 [ j/--F2] ... ok. exercise 140 [ j/--F3] ... ok. exercise 141 [ j/--nobias] ... ok. exercise 142 [ j/--EmL] ... ok. exercise 143 [ j/--EmN] ... ok. exercise 144 [ j/--EvL] ... ok. exercise 145 [ j/--EvN] ... ok. exercise 146 [ j/--EfL] ... ok. exercise 147 [ j/--EfN] ... ok. exercise 148 [ j/--Eft] ... ok. exercise 149 [ j/--nonull2] ... ok. exercise 150 [ j/-Z] ... ok. exercise 151 [ j/--domZ] ... ok. exercise 152 [ j/--seed] ... ok. exercise 153 [ j/--qformat] ... ok. exercise 154 [ j/--tformat] ... ok. exercise 155 [ phmmer] ... ok. exercise 156 [ phmmer/-h] ... ok. exercise 157 [ phmmer/-o] ... ok. exercise 158 [ phmmer/-A] ... ok. exercise 159 [ phmmer/--tblout] ... ok. exercise 160 [ phmmer/--domtblout] ... ok. exercise 161 [ phmmer/--pfamtblout] ... ok. exercise 162 [ phmmer/--acc] ... ok. exercise 163 [ phmmer/--noali] ... ok. exercise 164 [ phmmer/--notextw] ... ok. exercise 165 [ phmmer/--textw] ... ok. exercise 166 [ phmmer/--popen] ... ok. exercise 167 [ phmmer/--pextend] ... ok. exercise 168 [ phmmer/--mxfile] ... ok. exercise 169 [ phmmer/-E] ... ok. exercise 170 [ phmmer/-T] ... ok. exercise 171 [ phmmer/--domE] ... ok. exercise 172 [ phmmer/--domT] ... ok. exercise 173 [ phmmer/--incE] ... ok. exercise 174 [ phmmer/--incT] ... ok. exercise 175 [ phmmer/--incdomE] ... ok. exercise 176 [ phmmer/--incdomT] ... ok. exercise 177 [ phmmer/--max] ... ok. exercise 178 [ phmmer/--F1] ... ok. exercise 179 [ phmmer/--F2] ... ok. exercise 180 [ phmmer/--F3] ... ok. exercise 181 [ phmmer/--nobias] ... ok. exercise 182 [ phmmer/--EmL] ... ok. exercise 183 [ phmmer/--EmN] ... ok. exercise 184 [ phmmer/--EvL] ... ok. exercise 185 [ phmmer/--EvN] ... ok. exercise 186 [ phmmer/--EfL] ... ok. exercise 187 [ phmmer/--EfN] ... ok. exercise 188 [ phmmer/--Eft] ... ok. exercise 189 [ phmmer/--nonull2] ... ok. exercise 190 [ phmmer/-Z] ... ok. exercise 191 [ phmmer/--domZ] ... ok. exercise 192 [ phmmer/--seed] ... ok. exercise 193 [ phmmer/--qformat] ... ok. exercise 194 [ phmmer/--tformat] ... ok. exercise 195 [ nhmmer] ... ok. exercise 196 [ nhmmer/-h] ... ok. exercise 197 [ nhmmer/-o] ... ok. exercise 198 [ nhmmer/-A] ... ok. exercise 199 [ nhmmer/--tblout] ... ok. exercise 200 [ nhmmer/--dfamtblout] ... ok. exercise 201 [ nhmmer/--acc] ... ok. exercise 202 [ nhmmer/--noali] ... ok. exercise 203 [ nhmmer/--notextw] ... ok. exercise 204 [ nhmmer/--textw] ... ok. exercise 205 [ nhmmer/-E] ... ok. exercise 206 [ nhmmer/-T] ... ok. exercise 207 [ nhmmer/--incE] ... ok. exercise 208 [ nhmmer/--incT] ... ok. exercise 209 [ nhmmer/--max] ... ok. exercise 210 [ nhmmer/--F1] ... ok. exercise 211 [ nhmmer/--F2] ... ok. exercise 212 [ nhmmer/--F3] ... ok. exercise 213 [ nhmmer/--nobias] ... ok. exercise 214 [ nhmmer/--nonull2] ... ok. exercise 215 [ nhmmer/-Z] ... ok. exercise 216 [ nhmmer/--seed] ... ok. exercise 217 [ nhmmscan] ... ok. exercise 218 [ nhmmscan/-h] ... ok. exercise 219 [ nhmmscan/-o] ... ok. exercise 220 [ nhmmscan/--tblout] ... ok. exercise 221 [nhmmscan/--dfamtblout] ... ok. exercise 222 [ nhmmscan/--acc] ... ok. exercise 223 [ nhmmscan/--noali] ... ok. exercise 224 [ nhmmscan/--notextw] ... ok. exercise 225 [ nhmmscan/--textw] ... ok. exercise 226 [ nhmmscan/-E] ... ok. exercise 227 [ nhmmscan/-T] ... ok. exercise 228 [ nhmmscan/--incE] ... ok. exercise 229 [ nhmmscan/--incT] ... ok. exercise 230 [ nhmmscan/--max] ... ok. exercise 231 [ nhmmscan/--F1] ... ok. exercise 232 [ nhmmscan/--F2] ... ok. exercise 233 [ nhmmscan/--F3] ... ok. exercise 234 [ nhmmscan/--nobias] ... ok. exercise 235 [ nhmmscan/--nonull2] ... ok. exercise 236 [ nhmmscan/-Z] ... ok. exercise 237 [ nhmmscan/--seed] ... ok. exercise 238 [ hmmbuild_variation] ... ok. exercise 239 [ hmmscan_variation] ... ok. exercise 240 [ hmmsearch_variation] ... ok. exercise 241 [ phmmer_variation] ... ok. exercise 242 [ mapali] ... ok. exercise 243 [ fragments] ... ok. exercise 244 [ nonresidues] ... ok. exercise 245 [ opt-annotation] ... ok. exercise 246 [ dup-names] ... ok. exercise 247 [ mapali-again] ... ok. exercise 248 [ delete-corruption] ... ok. exercise 249 [ msa-integrity] ... ok. exercise 250 [ hmmemit-consensus] ... ok. exercise 251 [ hmmconvert] ... ok. exercise 252 [ stdin_pipes] ... ok. exercise 253 [ nhmmer_generic] ... ok. exercise 254 [ hmmpgmd_ga] ... ok. exercise 255 [ brute-itest] ... ok. exercise 256 [ hmmpress-itest] ... ok. exercise 257 [ h39] ... ok. exercise 258 [ h45] ... ok. exercise 259 [ h50] ... ok. exercise 260 [ h82] ... ok. All 260 exercises at level <= 2 passed. System information: Wed Dec 2 11:14:45 UTC 2015 Linux lgw01-05 3.19.0-37-generic #42~14.04.1-Ubuntu SMP Mon Nov 23 15:13:51 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux make[3]: Leaving directory '/«PKGBUILDDIR»/testsuite' make[2]: Leaving directory '/«PKGBUILDDIR»' make[1]: Leaving directory '/«PKGBUILDDIR»' fakeroot debian/rules binary dh binary --with autotools_dev dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/«PKGBUILDDIR»/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/«PKGBUILDDIR»' /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/bin /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/include /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1 /usr/bin/install -c -d /«PKGBUILDDIR»/debian/tmp/usr/share/doc/hmmer SUBDIR src make[2]: Entering directory '/«PKGBUILDDIR»/src' SUBDIR impl_sse make[3]: Entering directory '/«PKGBUILDDIR»/src/impl_sse' for file in impl_sse.h; do \ /usr/bin/install -c -m 0644 ./$file /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ done make[3]: Leaving directory '/«PKGBUILDDIR»/src/impl_sse' for file in alimask hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer phmmer nhmmer nhmmscan hmmpgmd hmmc2 makehmmerdb hmmerfm-exactmatch; do \ /usr/bin/install -c -m 0755 $file /«PKGBUILDDIR»/debian/tmp/usr/bin/ ;\ done /usr/bin/install -c -m 0755 libhmmer.a /«PKGBUILDDIR»/debian/tmp/usr/lib/x86_64-linux-gnu/ for file in hmmer.h cachedb.h p7_gbands.h p7_gmxb.h p7_gmxchk.h p7_hmmcache.h; do \ /usr/bin/install -c -m 0644 ./$file /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ done /usr/bin/install -c -m 0644 p7_config.h /«PKGBUILDDIR»/debian/tmp/usr/include/ ;\ make[2]: Leaving directory '/«PKGBUILDDIR»/src' SUBDIR documentation make[2]: Entering directory '/«PKGBUILDDIR»/documentation' SUBDIR man make[3]: Entering directory '/«PKGBUILDDIR»/documentation/man' for file in hmmer hmmalign hmmbuild hmmconvert hmmemit hmmfetch hmmlogo hmmpgmd hmmpress hmmscan hmmsearch hmmsim hmmstat jackhmmer makehmmerdb phmmer nhmmer nhmmscan alimask; do \ /usr/bin/install -c -m 0755 ./$file.man /«PKGBUILDDIR»/debian/tmp/usr/share/man/man1/${file}.1 ;\ done make[3]: Leaving directory '/«PKGBUILDDIR»/documentation/man' make[2]: Leaving directory '/«PKGBUILDDIR»/documentation' make[1]: Leaving directory '/«PKGBUILDDIR»' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/«PKGBUILDDIR»' dh_compress -Xtutorial/ make[1]: Leaving directory '/«PKGBUILDDIR»' dh_fixperms dh_strip dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: hmmer dh_strip debug symbol extraction: packages to act on: hmmer dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: -is is deprecated; it is without effect dpkg-gencontrol: warning: -ip is deprecated; it is without effect dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: Depends field of package hmmer-doc: unknown substitution variable ${shlibs:Depends} dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: hmmer dh_gencontrol debug symbol wrapper: packages to act on: hmmer dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package hmmer (pkgdir debian/hmmer, ddeb package dir debian/hmmer-dbgsym) dh_gencontrol debug symbol wrapper: building hmmer-dbgsym_3.1b2-2_amd64.ddeb dpkg-deb: building package 'hmmer-dbgsym' in '../hmmer-dbgsym_3.1b2-2_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile hmmer-dbgsym_3.1b2-2_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums dh_builddeb INFO: pkgstriptranslations version 122 pkgstriptranslations: processing hmmer (in debian/hmmer); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer/DEBIAN/control, package hmmer, directory debian/hmmer pkgstripfiles: Truncating usr/share/doc/hmmer/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package hmmer took 0 s dpkg-deb: building package 'hmmer' in '../hmmer_3.1b2-2_amd64.deb'. INFO: pkgstriptranslations version 122 pkgstriptranslations: processing hmmer-doc (in debian/hmmer-doc); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer-doc/DEBIAN/control, package hmmer-doc, directory debian/hmmer-doc pkgstripfiles: Truncating usr/share/doc/hmmer-doc/changelog.Debian.gz to topmost ten records pkgstripfiles: Disabled PNG optimization for -doc package hmmer-doc (to save build time) dpkg-deb: building package 'hmmer-doc' in '../hmmer-doc_3.1b2-2_all.deb'. dpkg-genchanges -b -mLaunchpad Build Daemon >../hmmer_3.1b2-2_amd64.changes dpkg-genchanges: binary-only upload (no source code included) dpkg-source --after-build hmmer-3.1b2 dpkg-buildpackage: binary-only upload (no source included) ──────────────────────────────────────────────────────────────────────────────── Build finished at 20151202-1115 Finished ──────── I: Built successfully ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build Chroot │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Changes │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer_3.1b2-2_amd64.changes: ──────────────────────────── Format: 1.8 Date: Wed, 02 Dec 2015 08:21:42 +0100 Source: hmmer Binary: hmmer hmmer-doc Architecture: amd64 all Version: 3.1b2-2 Distribution: xenial-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hmmer - profile hidden Markov models for protein sequence analysis hmmer-doc - profile hidden Markov models for protein sequence analysis (docs) Closes: 806675 Changes: hmmer (3.1b2-2) unstable; urgency=medium . * debian/control: Fix contact address * restrict architectures to Intel architectures Closes: #806675 Checksums-Sha1: 62fe9c72adc55480ccb533bd13e558ec7dc2f2c0 3608982 hmmer-dbgsym_3.1b2-2_amd64.ddeb 87c98edafc751b1a67447597d860187e1c6e084b 993350 hmmer-doc_3.1b2-2_all.deb 8b4170d8a0a19d7aea1ac76725d624ad5cdfa0c1 1136992 hmmer_3.1b2-2_amd64.deb Checksums-Sha256: af9e9a61b409da8d22ae532a1a139d016d1276d53245848f79f7e956ab9d5c90 3608982 hmmer-dbgsym_3.1b2-2_amd64.ddeb 8441e9338c22faed0e016e9a0616dc699010bbb6e161f6ed199d4067e3faaba3 993350 hmmer-doc_3.1b2-2_all.deb 58cdc25f82d2732d42f496efbf528a286963f9ff99eae49c96b53efb13674e4e 1136992 hmmer_3.1b2-2_amd64.deb Files: 93bc82b1dd032c271fcf1a55e5d3ed0d 3608982 science extra hmmer-dbgsym_3.1b2-2_amd64.ddeb d0a1672ab38a7ddb0c0fdcc2b3144aff 993350 doc optional hmmer-doc_3.1b2-2_all.deb 5c1cdd2efeb497595a69f62f6c45993d 1136992 science optional hmmer_3.1b2-2_amd64.deb ┌──────────────────────────────────────────────────────────────────────────────┐ │ Package contents │ └──────────────────────────────────────────────────────────────────────────────┘ hmmer-doc_3.1b2-2_all.deb ───────────────────────── new debian package, version 2.0. size 993350 bytes: control archive=1550 bytes. 946 bytes, 22 lines control 2247 bytes, 29 lines md5sums Package: hmmer-doc Source: hmmer Version: 3.1b2-2 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 5732 Recommends: hmmer (>= 3.1b2-2), evince | pdf-viewer Section: doc Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (docs) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains documents and example files for the hmmer package. drwxr-xr-x root/root 0 2015-12-02 11:14 ./ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc-base/ -rw-r--r-- root/root 576 2013-09-12 09:00 ./usr/share/doc-base/hmmer drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/ -rw-r--r-- root/root 500281 2015-03-04 01:49 ./usr/share/doc/hmmer-doc/Userguide.pdf.gz -rw-r--r-- root/root 1412 2015-12-02 11:15 ./usr/share/doc/hmmer-doc/changelog.Debian.gz -rw-r--r-- root/root 3389 2015-12-01 21:27 ./usr/share/doc/hmmer-doc/copyright drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/tutorial/ -rw-r--r-- root/root 2 2015-02-26 12:26 ./usr/share/doc/hmmer-doc/tutorial/.dropbox.attr -rw-r--r-- root/root 15586 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/7LESS_DROME -rw-r--r-- root/root 183 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/HBB_HUMAN -rw-r--r-- root/root 14842 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm -rw-r--r-- root/root 7943 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3f -rw-r--r-- root/root 168 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3i -rw-r--r-- root/root 5557 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3m -rw-r--r-- root/root 13016 2015-12-02 11:14 ./usr/share/doc/hmmer-doc/tutorial/MADE1.hmm.h3p -rw-r--r-- root/root 6960 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.out -rw-r--r-- root/root 2491467 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/MADE1.sto -rw-r--r-- root/root 121484 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/Pkinase.hmm -rw-r--r-- root/root 94724 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/Pkinase.sto -rw-r--r-- root/root 335532 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/dna_target.fa -rw-r--r-- root/root 41100 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.hmm -rw-r--r-- root/root 7518 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.out -rw-r--r-- root/root 29746 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/fn3.sto -rw-r--r-- root/root 70298 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.hmm -rw-r--r-- root/root 1575896 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.out -rw-r--r-- root/root 863 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins4.sto -rw-r--r-- root/root 7210 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/globins45.fa -rw-r--r-- root/root 232394 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam -rw-r--r-- root/root 54792 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3f -rw-r--r-- root/root 247 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3i -rw-r--r-- root/root 96927 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3m -rw-r--r-- root/root 113765 2015-02-26 12:46 ./usr/share/doc/hmmer-doc/tutorial/minifam.h3p hmmer_3.1b2-2_amd64.deb ─────────────────────── new debian package, version 2.0. size 1136992 bytes: control archive=1812 bytes. 857 bytes, 20 lines control 2493 bytes, 42 lines md5sums Package: hmmer Version: 3.1b2-2 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 11613 Depends: libc6 (>= 2.15) Suggests: hmmer-doc (>= 3.1b2-2) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2015-12-02 11:14 ./ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/bin/ -rwxr-xr-x root/root 299992 2015-12-02 11:14 ./usr/bin/alimask -rwxr-xr-x root/root 643000 2015-12-02 11:14 ./usr/bin/hmmalign -rwxr-xr-x root/root 725384 2015-12-02 11:14 ./usr/bin/hmmbuild -rwxr-xr-x root/root 648280 2015-12-02 11:14 ./usr/bin/hmmc2 -rwxr-xr-x root/root 396760 2015-12-02 11:14 ./usr/bin/hmmconvert -rwxr-xr-x root/root 643480 2015-12-02 11:14 ./usr/bin/hmmemit -rwxr-xr-x root/root 97432 2015-12-02 11:14 ./usr/bin/hmmerfm-exactmatch -rwxr-xr-x root/root 405144 2015-12-02 11:14 ./usr/bin/hmmfetch -rwxr-xr-x root/root 396760 2015-12-02 11:14 ./usr/bin/hmmlogo -rwxr-xr-x root/root 934864 2015-12-02 11:14 ./usr/bin/hmmpgmd -rwxr-xr-x root/root 408816 2015-12-02 11:14 ./usr/bin/hmmpress -rwxr-xr-x root/root 771888 2015-12-02 11:14 ./usr/bin/hmmscan -rwxr-xr-x root/root 776224 2015-12-02 11:14 ./usr/bin/hmmsearch -rwxr-xr-x root/root 428072 2015-12-02 11:14 ./usr/bin/hmmsim -rwxr-xr-x root/root 397000 2015-12-02 11:14 ./usr/bin/hmmstat -rwxr-xr-x root/root 903184 2015-12-02 11:14 ./usr/bin/jackhmmer -rwxr-xr-x root/root 372456 2015-12-02 11:14 ./usr/bin/makehmmerdb -rwxr-xr-x root/root 911056 2015-12-02 11:14 ./usr/bin/nhmmer -rwxr-xr-x root/root 776544 2015-12-02 11:14 ./usr/bin/nhmmscan -rwxr-xr-x root/root 852624 2015-12-02 11:14 ./usr/bin/phmmer drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/doc/hmmer/ -rw-r--r-- root/root 491 2013-09-12 09:00 ./usr/share/doc/hmmer/README.Debian -rw-r--r-- root/root 1410 2015-12-02 11:15 ./usr/share/doc/hmmer/changelog.Debian.gz -rw-r--r-- root/root 3389 2015-12-01 21:27 ./usr/share/doc/hmmer/copyright drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/man/ drwxr-xr-x root/root 0 2015-12-02 11:14 ./usr/share/man/man1/ -rw-r--r-- root/root 3560 2015-12-02 11:14 ./usr/share/man/man1/alimask.1.gz -rw-r--r-- root/root 1577 2015-12-02 11:14 ./usr/share/man/man1/hmmalign.1.gz -rw-r--r-- root/root 5121 2015-12-02 11:14 ./usr/share/man/man1/hmmbuild.1.gz -rw-r--r-- root/root 1044 2015-12-02 11:14 ./usr/share/man/man1/hmmconvert.1.gz -rw-r--r-- root/root 2272 2015-12-02 11:14 ./usr/share/man/man1/hmmemit.1.gz -rw-r--r-- root/root 2234 2015-12-02 11:14 ./usr/share/man/man1/hmmer.1.gz -rw-r--r-- root/root 1768 2015-12-02 11:14 ./usr/share/man/man1/hmmfetch.1.gz -rw-r--r-- root/root 1146 2015-12-02 11:14 ./usr/share/man/man1/hmmlogo.1.gz -rw-r--r-- root/root 2312 2015-12-02 11:14 ./usr/share/man/man1/hmmpgmd.1.gz -rw-r--r-- root/root 997 2015-12-02 11:14 ./usr/share/man/man1/hmmpress.1.gz -rw-r--r-- root/root 4559 2015-12-02 11:14 ./usr/share/man/man1/hmmscan.1.gz -rw-r--r-- root/root 4482 2015-12-02 11:14 ./usr/share/man/man1/hmmsearch.1.gz -rw-r--r-- root/root 5264 2015-12-02 11:14 ./usr/share/man/man1/hmmsim.1.gz -rw-r--r-- root/root 1419 2015-12-02 11:14 ./usr/share/man/man1/hmmstat.1.gz -rw-r--r-- root/root 7695 2015-12-02 11:14 ./usr/share/man/man1/jackhmmer.1.gz -rw-r--r-- root/root 1843 2015-12-02 11:14 ./usr/share/man/man1/makehmmerdb.1.gz -rw-r--r-- root/root 6398 2015-12-02 11:14 ./usr/share/man/man1/nhmmer.1.gz -rw-r--r-- root/root 4845 2015-12-02 11:14 ./usr/share/man/man1/nhmmscan.1.gz -rw-r--r-- root/root 4907 2015-12-02 11:14 ./usr/share/man/man1/phmmer.1.gz ┌──────────────────────────────────────────────────────────────────────────────┐ │ Post Build │ └──────────────────────────────────────────────────────────────────────────────┘ ┌──────────────────────────────────────────────────────────────────────────────┐ │ Cleanup │ └──────────────────────────────────────────────────────────────────────────────┘ Not removing build depends: as requested Keeping session: ┌──────────────────────────────────────────────────────────────────────────────┐ │ Summary │ └──────────────────────────────────────────────────────────────────────────────┘ Build Architecture: amd64 Build-Space: 270124 Build-Time: 195 Distribution: xenial-proposed Host Architecture: amd64 Install-Time: 10 Job: hmmer_3.1b2-2.dsc Machine Architecture: amd64 Package: hmmer Package-Time: 206 Source-Version: 3.1b2-2 Space: 270124 Status: successful Version: 3.1b2-2 ──────────────────────────────────────────────────────────────────────────────── Finished at 20151202-1115 Build needed 00:03:26, 270124k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-8368700'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-8368700/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-8368700'] Unmounting chroot for build PACKAGEBUILD-8368700... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-8368700'] Removing build PACKAGEBUILD-8368700