https://launchpad.net/ubuntu/+source/hmmer2/2.3.2+dfsg-8/+build/24934575 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos02-ppc64el-019 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64le Buildd toolchain package versions: launchpad-buildd_224~600~ubuntu20.04.1 python3-lpbuildd_224~600~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Dec 11:34:50 ntpdate[2031]: adjust time server 10.211.37.1 offset -0.009642 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24934575 --image-type chroot /home/buildd/filecache-default/ed25cb74ebdf957e8c5d9aefaa42d03092c4f62f Creating target for build PACKAGEBUILD-24934575 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24934575 Starting target for build PACKAGEBUILD-24934575 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24934575 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24934575 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24934575 Updating target for build PACKAGEBUILD-24934575 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el Packages [1339 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe ppc64el Packages [14.5 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5866 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el Packages [105 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el Packages [1276 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [416 kB] Fetched 24.6 MB in 6s (3950 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-common binutils-powerpc64le-linux-gnu ca-certificates coreutils cpp-12 dash debconf dpkg dpkg-dev g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libitm1 libkmod2 liblsan0 liblz4-1 libquadmath0 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libtsan2 libubsan1 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils zlib1g 46 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 82.2 MB of archives. After this operation, 50.6 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el coreutils ppc64el 9.1-1ubuntu1 [1508 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el dpkg ppc64el 1.21.12ubuntu2 [1424 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el dash ppc64el 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [105 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libperl5.36 ppc64el 5.36.0-6 [4847 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl ppc64el 5.36.0-6 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el perl-base ppc64el 5.36.0-6 [1855 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el zlib1g ppc64el 1:1.2.13.dfsg-1ubuntu3 [70.1 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el sysvinit-utils ppc64el 3.05-7ubuntu1 [27.6 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el systemd-sysv ppc64el 252.1-1ubuntu1 [11.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el debconf all 1.5.80 [125 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libssl3 ppc64el 3.0.5-2ubuntu2 [2127 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libkmod2 ppc64el 30+20220905-1ubuntu1 [59.8 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcap2 ppc64el 1:2.63-1 [32.5 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el liblz4-1 ppc64el 1.9.4-1 [104 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el systemd ppc64el 252.1-1ubuntu1 [3190 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsystemd-shared ppc64el 252.1-1ubuntu1 [1951 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libsystemd0 ppc64el 252.1-1ubuntu1 [405 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libcc1-0 ppc64el 12.2.0-10ubuntu1 [48.9 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libctf-nobfd0 ppc64el 2.39.50.20221211-0ubuntu1 [108 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libctf0 ppc64el 2.39.50.20221211-0ubuntu1 [109 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libjansson4 ppc64el 2.14-2 [40.0 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.39.50.20221211-0ubuntu1 [2443 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libbinutils ppc64el 2.39.50.20221211-0ubuntu1 [724 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils-common ppc64el 2.39.50.20221211-0ubuntu1 [225 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el binutils ppc64el 2.39.50.20221211-0ubuntu1 [3118 B] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgomp1 ppc64el 12.2.0-10ubuntu1 [139 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libitm1 ppc64el 12.2.0-10ubuntu1 [32.5 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libatomic1 ppc64el 12.2.0-10ubuntu1 [10.6 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libasan8 ppc64el 12.2.0-10ubuntu1 [2452 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el liblsan0 ppc64el 12.2.0-10ubuntu1 [1082 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libtsan2 ppc64el 12.2.0-10ubuntu1 [2567 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libubsan1 ppc64el 12.2.0-10ubuntu1 [992 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libquadmath0 ppc64el 12.2.0-10ubuntu1 [155 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gcc-12-base ppc64el 12.2.0-10ubuntu1 [19.6 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libstdc++6 ppc64el 12.2.0-10ubuntu1 [787 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el g++-12 ppc64el 12.2.0-10ubuntu1 [11.4 MB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libstdc++-12-dev ppc64el 12.2.0-10ubuntu1 [2289 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgcc-12-dev ppc64el 12.2.0-10ubuntu1 [1513 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el gcc-12 ppc64el 12.2.0-10ubuntu1 [19.8 MB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el cpp-12 ppc64el 12.2.0-10ubuntu1 [10.0 MB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libgcc-s1 ppc64el 12.2.0-10ubuntu1 [34.0 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libudev1 ppc64el 252.1-1ubuntu1 [110 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el adduser all 3.129ubuntu1 [59.0 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el openssl ppc64el 3.0.5-2ubuntu2 [1194 kB] Get:46 http://ftpmaster.internal/ubuntu lunar/main ppc64el ca-certificates all 20211016ubuntu1 [141 kB] Get:47 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:48 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:49 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el linux-libc-dev ppc64el 5.19.0-23.24 [1335 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 82.2 MB in 51s (1613 kB/s) (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_ppc64el.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_ppc64el.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_ppc64el.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13577 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-6_ppc64el.deb ... Unpacking perl (5.36.0-6) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. 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Setting up libasan8:ppc64el (12.2.0-10ubuntu1) ... Setting up libtsan2:ppc64el (12.2.0-10ubuntu1) ... Setting up libbinutils:ppc64el (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:ppc64el (12.2.0-10ubuntu1) ... Setting up libperl5.36:ppc64el (5.36.0-6) ... Setting up liblsan0:ppc64el (12.2.0-10ubuntu1) ... Setting up libitm1:ppc64el (12.2.0-10ubuntu1) ... Setting up libkmod2:ppc64el (30+20220905-1ubuntu1) ... Setting up libctf0:ppc64el (2.39.50.20221211-0ubuntu1) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgcc-12-dev:ppc64el (12.2.0-10ubuntu1) ... Setting up libsystemd-shared:ppc64el (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up binutils-powerpc64le-linux-gnu (2.39.50.20221211-0ubuntu1) ... Setting up libstdc++-12-dev:ppc64el (12.2.0-10ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15488 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24934575 ppc64el lunar-proposed -c chroot:build-PACKAGEBUILD-24934575 --arch=ppc64el --dist=lunar-proposed --nolog hmmer2_2.3.2+dfsg-8.dsc Initiating build PACKAGEBUILD-24934575 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64le sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos02-ppc64el-019.buildd +==============================================================================+ | hmmer2 2.3.2+dfsg-8 (ppc64el) Tue, 13 Dec 2022 11:36:03 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24934575/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-BY5ZwP/resolver-qNOxcH' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hmmer2_2.3.2+dfsg-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/hmmer2-BY5ZwP/hmmer2-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-BY5ZwP' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [413 B] Get:5 copy:/<>/apt_archive ./ Packages [494 B] Fetched 1864 B in 0s (159 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff biosquid libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 19.7 MB of archives. After this operation, 74.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [714 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main ppc64el libelf1 ppc64el 0.188-1 [61.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main ppc64el libicu71 ppc64el 71.1-3ubuntu1 [10.9 MB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el libxml2 ppc64el 2.9.14+dfsg-1.1 [820 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main ppc64el bsdextrautils ppc64el 2.38.1-4ubuntu1 [76.4 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic-mgc ppc64el 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main ppc64el libmagic1 ppc64el 1:5.41-4 [103 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main ppc64el file ppc64el 1:5.41-4 [22.6 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext-base ppc64el 0.21-10 [41.8 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main ppc64el libuchardet0 ppc64el 0.0.7-1build2 [80.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main ppc64el groff-base ppc64el 1.22.4-9 [1004 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main ppc64el libpipeline1 ppc64el 1.5.7-1 [25.8 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main ppc64el man-db ppc64el 2.11.1-1 [1257 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main ppc64el m4 ppc64el 1.4.19-1 [275 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main ppc64el autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main ppc64el autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main ppc64el automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main ppc64el autopoint all 0.21-10 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main ppc64el libtool all 2.4.7-5 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main ppc64el libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main ppc64el libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main ppc64el libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:26 http://ftpmaster.internal/ubuntu lunar/main ppc64el libdw1 ppc64el 0.188-1 [282 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main ppc64el debugedit ppc64el 1:5.0-5 [51.1 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main ppc64el dwz ppc64el 0.14+20220924-2 [139 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main ppc64el gettext ppc64el 0.21-10 [971 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main ppc64el intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main ppc64el po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main ppc64el debhelper all 13.10.1ubuntu1 [924 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main ppc64el libperl4-corelibs-perl all 0.004-3 [37.9 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el libpkgconf3 ppc64el 1.8.0-11 [35.1 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libsquid1 ppc64el 1.9g+cvs20050121-12 [93.0 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/universe ppc64el libsquid-dev ppc64el 1.9g+cvs20050121-12 [166 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el pkgconf-bin ppc64el 1.8.0-11 [22.0 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/universe ppc64el pkgconf ppc64el 1.8.0-11 [16.4 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main ppc64el pkg-config ppc64el 1.8.0-11 [5414 B] Get:40 http://ftpmaster.internal/ubuntu lunar/universe ppc64el rename all 1.31-1 [20.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main ppc64el dh-exec ppc64el 0.27 [26.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 19.7 MB in 19s (1015 kB/s) Selecting previously unselected package libelf1:ppc64el. (Reading database ... 15488 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-1_ppc64el.deb ... Unpacking libelf1:ppc64el (0.188-1) ... Selecting previously unselected package libicu71:ppc64el. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_ppc64el.deb ... Unpacking libicu71:ppc64el (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:ppc64el. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_ppc64el.deb ... Unpacking libxml2:ppc64el (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_ppc64el.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_ppc64el.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:ppc64el. Preparing to unpack .../05-libmagic1_1%3a5.41-4_ppc64el.deb ... Unpacking libmagic1:ppc64el (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.41-4_ppc64el.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.21-10_ppc64el.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:ppc64el. Preparing to unpack .../08-libuchardet0_0.0.7-1build2_ppc64el.deb ... Unpacking libuchardet0:ppc64el (0.0.7-1build2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.22.4-9_ppc64el.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package libpipeline1:ppc64el. Preparing to unpack .../10-libpipeline1_1.5.7-1_ppc64el.deb ... Unpacking libpipeline1:ppc64el (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.11.1-1_ppc64el.deb ... Unpacking man-db (2.11.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-1_ppc64el.deb ... Unpacking m4 (1.4.19-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.10.1ubuntu1_all.deb ... Unpacking libdebhelper-perl (13.10.1ubuntu1) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.13.0-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.13.0-2_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-2) ... Selecting previously unselected package libdw1:ppc64el. Preparing to unpack .../24-libdw1_0.188-1_ppc64el.deb ... Unpacking libdw1:ppc64el (0.188-1) ... Selecting previously unselected package debugedit. Preparing to unpack .../25-debugedit_1%3a5.0-5_ppc64el.deb ... Unpacking debugedit (1:5.0-5) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.14+20220924-2_ppc64el.deb ... Unpacking dwz (0.14+20220924-2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-10_ppc64el.deb ... Unpacking gettext (0.21-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. 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Selecting previously unselected package pkgconf:ppc64el. Preparing to unpack .../36-pkgconf_1.8.0-11_ppc64el.deb ... Unpacking pkgconf:ppc64el (1.8.0-11) ... Selecting previously unselected package pkg-config:ppc64el. Preparing to unpack .../37-pkg-config_1.8.0-11_ppc64el.deb ... Unpacking pkg-config:ppc64el (1.8.0-11) ... Selecting previously unselected package rename. Preparing to unpack .../38-rename_1.31-1_all.deb ... Unpacking rename (1.31-1) ... Selecting previously unselected package dh-exec. Preparing to unpack .../39-dh-exec_0.27_ppc64el.deb ... Unpacking dh-exec (0.27) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../40-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:ppc64el (1.5.7-1) ... Setting up libicu71:ppc64el (71.1-3ubuntu1) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libperl4-corelibs-perl (0.004-3) ... Setting up libmagic1:ppc64el (1:5.41-4) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up rename (1.31-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.41-4) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:ppc64el (1.8.0-11) ... Setting up autopoint (0.21-10) ... Setting up pkgconf-bin (1.8.0-11) ... Setting up autoconf (2.71-2) ... Setting up libsquid1 (1.9g+cvs20050121-12) ... Setting up libuchardet0:ppc64el (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:ppc64el (0.188-1) ... Setting up libxml2:ppc64el (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:ppc64el (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libsquid-dev (1.9g+cvs20050121-12) ... Setting up pkgconf:ppc64el (1.8.0-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:ppc64el (1.8.0-11) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up dh-exec (0.27) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64el (ppc64le) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221211-0ubuntu1 binutils-common_2.39.50.20221211-0ubuntu1 binutils-powerpc64le-linux-gnu_2.39.50.20221211-0ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.80 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.12ubuntu2 dpkg-dev_1.21.12ubuntu2 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-10ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-10ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39.50.20221211-0ubuntu1 libblkid1_2.38.1-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.63-1 libcc1-0_12.2.0-10ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.50.20221211-0ubuntu1 libctf0_2.39.50.20221211-0ubuntu1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.12ubuntu2 libdw1_0.188-1 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10ubuntu1 libgcc-s1_12.2.0-10ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-10ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-10ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblsan0_12.2.0-10ubuntu1 liblz4-1_1.9.4-1 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl4-corelibs-perl_0.004-3 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-11 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libquadmath0_12.2.0-10ubuntu1 libreadline8_8.2-1.2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.0-1 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.1-1ubuntu1 libsystemd0_252.1-1ubuntu1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan2_12.2.0-10ubuntu1 libubsan1_12.2.0-10ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.1-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1ubuntu1 pkg-config_1.8.0-11 pkgbinarymangler_149 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1.2 rename_1.31-1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hmmer2 Binary: hmmer2, hmmer2-doc, libhmmer2-dev Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Laszlo Kajan Homepage: http://hmmer.janelia.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename Package-List: hmmer2 deb science optional arch=any hmmer2-doc deb doc optional arch=all libhmmer2-dev deb libdevel optional arch=any Checksums-Sha1: 7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 6d6d658fa934eb53c22780e16c7899171587dbcc 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 9cfce31a7ad72d780abfd68ddef533c87ae4388dc9e9e7e9680630f25791ad0d 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Files: 4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz a223d42d33db0c92ee26caccbc9a706b 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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No public key dpkg-source: warning: cannot verify inline signature for ./hmmer2_2.3.2+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting hmmer2 in /<> dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch dpkg-source: info: applying add-runstatedir-option.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24934575 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24934575 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24934575 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e configure_not_used ] ; then mv configure_not_used configure; fi rm -f configure.ac make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cp -a debian/missing-sources/configure.ac . mv configure configure_not_used dh_autoreconf configure.ac:111: warning: underquoted definition of CHECK_GNU_MAKE configure.ac:111: run info Automake 'Extending aclocal' configure.ac:111: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:153: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:153: the top level configure.ac:479: warning: The macro `AC_LANG_C' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level configure.ac:479: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm ./configure --build=powerpc64le-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/powerpc64le-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-lfs configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking build system type... powerpc64le-unknown-linux-gnu checking host system type... powerpc64le-unknown-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... yes checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/src' gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c core_algorithms.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c debug.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c display.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emit.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emulation.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c fast_algorithms.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c histogram.c histogram.c: In function ‘ExtremeValueSetHistogram’: histogram.c:725:23: warning: implicit declaration of function ‘IncompleteGamma’ [-Wimplicit-function-declaration] 725 | h->chip = (float) IncompleteGamma((double)(nbins-1-ndegrees)/2., | ^~~~~~~~~~~~~~~ gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmio.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c mathsupport.c mathsupport.c: In function ‘Logp_cvec’: mathsupport.c:229:15: warning: implicit declaration of function ‘Gammln’ [-Wimplicit-function-declaration] 229 | lnp += Gammln(alpha[x] + cvec[x]); | ^~~~~~ gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c masks.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c misc.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c modelmakers.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan7.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan9.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c postprob.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c prior.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c pvm.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c threads.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c tophits.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c trace.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmbuild.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmcalibrate.c hmmcalibrate.c: In function ‘workpool_start’: hmmcalibrate.c:646:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 646 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmconvert.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmemit.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmfetch.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmindex.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmpfam.c hmmpfam.c: In function ‘workpool_start’: hmmpfam.c:1032:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1032 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmsearch.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm hmmsearch.c: In function ‘workpool_start’: hmmsearch.c:1021:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1021 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/testsuite' gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c evd_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c masks_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c parsingviterbi_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c tophits_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c trace_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c viterbi_exercise.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c weeviterbi_test.c gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o alignalign_test -L../src alignalign_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o evd_test -L../src evd_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o masks_test -L../src masks_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o parsingviterbi_test -L../src parsingviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o tophits_test -L../src tophits_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o trace_test -L../src trace_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o viterbi_exercise -L../src viterbi_exercise.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O3 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o weeviterbi_test -L../src weeviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[2]: Entering directory '/<>' (cd testsuite; make check) make[3]: Entering directory '/<>/testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Running test suite exercises. Warning: some tests may take several minutes to complete. ./sqc 2 exercises.sqc . ../src exercise 1 [ hmmalign] ... ok. exercise 2 [ hmmalign/h] ... ok. exercise 3 [ hmmalign/m] ... ok. exercise 4 [ hmmalign/o] ... ok. exercise 5 [ hmmalign/q] ... ok. exercise 6 [ hmmalign/informat] ... ok. exercise 7 [ hmmalign/selex] ... ok. exercise 8 [ hmmalign/a2m] ... ok. exercise 9 [ hmmalign/clustal] ... ok. exercise 10 [ hmmalign/msf] ... ok. exercise 11 [ hmmalign/phylip] ... ok. exercise 12 [ hmmalign/oneline] ... ok. exercise 13 [ hmmalign/withali] ... ok. exercise 14 [ hmmalign/mapali] ... ok. exercise 15 [ hmmbuild] ... ok. exercise 16 [ hmmbuild/h] ... ok. exercise 17 [ hmmbuild/F] ... ok. exercise 18 [ hmmbuild/n] ... ok. exercise 19 [ hmmbuild/o] ... ok. exercise 20 [ hmmbuild/A] ... ok. exercise 21 [ hmmbuild/f] ... ok. exercise 22 [ hmmbuild/g] ... ok. exercise 23 [ hmmbuild/s] ... ok. exercise 24 [ hmmbuild/fast] ... ok. exercise 25 [ hmmbuild/hand] ... ok. exercise 26 [ hmmbuild/null] ... ok. exercise 27 [ hmmbuild/pam] ... ok. exercise 28 [ hmmbuild/prior] ... ok. exercise 29 [ hmmbuild/wblosum] ... ok. exercise 30 [ hmmbuild/wgsc] ... ok. exercise 31 [ hmmbuild/wme] ... ok. exercise 32 [ hmmbuild/wpb] ... ok. exercise 33 [ hmmbuild/wvoronoi] ... ok. exercise 34 [ hmmbuild/wnone] ... ok. exercise 35 [ hmmbuild/noeff] ... ok. exercise 36 [ hmmbuild/pbswitch] ... ok. exercise 37 [ hmmbuild/amino] ... ok. exercise 38 [ hmmbuild/nucleic] ... ok. exercise 39 [ hmmbuild/archpri] ... ok. exercise 40 [ hmmbuild/binary] ... ok. exercise 41 [ hmmbuild/cfile] ... ok. exercise 42 [ hmmbuild/gapmax] ... ok. exercise 43 [ hmmbuild/idlevel] ... ok. exercise 44 [ hmmbuild/informat] ... ok. exercise 45 [ hmmbuild/pamwgt] ... ok. exercise 46 [ hmmbuild/swentry] ... ok. exercise 47 [ hmmbuild/swexit] ... ok. exercise 48 [ hmmbuild/verbose] ... ok. exercise 49 [ hmmcalibrate] ... ok. exercise 50 [ hmmcalibrate/h] ... ok. exercise 51 [ hmmcalibrate/fixed] ... ok. exercise 52 [ hmmcalibrate/mean] ... ok. exercise 53 [ hmmcalibrate/hist] ... ok. exercise 54 [ hmmcalibrate/num] ... ok. exercise 55 [ hmmcalibrate/sd] ... ok. exercise 56 [ hmmcalibrate/seed] ... ok. exercise 57 [ hmmconvert] ... ok. exercise 58 [ hmmconvert/h] ... ok. exercise 59 [ hmmconvert/F] ... ok. exercise 60 [ hmmconvert/a] ... ok. exercise 61 [ hmmconvert/A] ... ok. exercise 62 [ hmmconvert/b] ... ok. exercise 63 [ hmmconvert/p] ... ok. exercise 64 [ hmmconvert/P] ... ok. exercise 65 [ hmmemit] ... ok. exercise 66 [ hmmemit/a] ... ok. exercise 67 [ hmmemit/c] ... ok. exercise 68 [ hmmemit/h] ... ok. exercise 69 [ hmmemit/n] ... ok. exercise 70 [ hmmemit/o] ... ok. exercise 71 [ hmmemit/q] ... ok. exercise 72 [ hmmemit/seed] ... ok. exercise 73 [ hmmindex] ... ok. exercise 74 [ hmmindex/h] ... ok. exercise 75 [ hmmfetch] ... ok. exercise 76 [ hmmfetch/h] ... ok. exercise 77 [ hmmfetch/n] ... ok. exercise 78 [ hmmpfam] ... ok. exercise 79 [ hmmpfam/h] ... ok. exercise 80 [ hmmpfam/n] ... ok. exercise 81 [ hmmpfam/A] ... ok. exercise 82 [ hmmpfam/E] ... ok. exercise 83 [ hmmpfam/T] ... ok. exercise 84 [ hmmpfam/Z] ... ok. exercise 85 [ hmmpfam/acc] ... ok. exercise 86 [ hmmpfam/compat] ... ok. exercise 87 [ hmmpfam/cut_ga] ... ok. exercise 88 [ hmmpfam/cut_nc] ... ok. exercise 89 [ hmmpfam/cut_tc] ... ok. exercise 90 [ hmmpfam/domE] ... ok. exercise 91 [ hmmpfam/domT] ... ok. exercise 92 [ hmmpfam/forward] ... ok. exercise 93 [ hmmpfam/informat] ... ok. exercise 94 [ hmmpfam/null2] ... ok. exercise 95 [ hmmpfam/xnu] ... ok. exercise 96 [ hmmsearch] ... ok. exercise 97 [ hmmsearch/h] ... ok. exercise 98 [ hmmsearch/A] ... ok. exercise 99 [ hmmsearch/E] ... ok. exercise 100 [ hmmsearch/T] ... ok. exercise 101 [ hmmsearch/Z] ... ok. exercise 102 [ hmmsearch/compat] ... ok. exercise 103 [ hmmsearch/cut_ga] ... ok. exercise 104 [ hmmsearch/cut_nc] ... ok. exercise 105 [ hmmsearch/cut_tc] ... ok. exercise 106 [ hmmsearch/domE] ... ok. exercise 107 [ hmmsearch/domT] ... ok. exercise 108 [ hmmsearch/forward] ... ok. exercise 109 [ hmmsearch/informat] ... ok. exercise 110 [ hmmsearch/null2] ... ok. exercise 111 [ hmmsearch/xnu] ... ok. exercise 112 [ align_align] ... ok. exercise 113 [ evd] ... ok. exercise 114 [ masks] ... ok. exercise 115 [ parsingv] ... ok. exercise 116 [ tophits] ... ok. exercise 117 [ trace] ... ok. exercise 118 [ viterbi] ... ok. exercise 119 [ weeviterbi] ... ok. exercise 120 [ test1/conversion] ... ok. All 120 exercises at level <= 2 passed. System information: Tue Dec 13 11:36:50 UTC 2022 Linux bos02-ppc64el-019 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 20:20:15 UTC 2022 ppc64le ppc64le ppc64le GNU/Linux make[3]: Leaving directory '/<>/testsuite' make[2]: Leaving directory '/<>' rm -f testsuite/*.ssi cd testsuite && make clean make[2]: Entering directory '/<>/testsuite' rm -f *.o *~ Makefile.bak core alignalign_test evd_test masks_test parsingviterbi_test tophits_test trace_test viterbi_exercise weeviterbi_test TAGS gmon.out make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/<>/debian/tmp make -j4 install DESTDIR=/<>/hmmer2-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/<>/hmmer2-2.3.2\+dfsg/debian/tmp make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/bin mkdir -p /<>/debian/tmp/share/man/man1 for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch ; do\ cp src/$file /<>/debian/tmp/bin/;\ done for file in hmmer hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch; do\ cp documentation/man/$file.man /<>/debian/tmp/share/man/man1/$file.1;\ done make[2]: Leaving directory '/<>' # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1: rename 's/^hmm/hmm2/;' /<>/debian/tmp/bin/* cd /<>/debian/tmp/bin; rename 's/^hmm/hmm2/;' * cd /<>/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * mv /<>/debian/tmp/share/man/man1/hmm2er.1 /<>/debian/tmp/share/man/man1/hmmer2.1 # lkajan: resolve man page hypen issue: sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' /<>/debian/tmp/share/man/man1/* make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k NOTES make[1]: Leaving directory '/<>' debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/hmmer2/usr/share/doc/hmmer2/examples; sed -i "s#hmm#hmm2#g" testsuite/exercises.sqc cp -a testsuite/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/; mkdir /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; cp -a tutorial/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; sed -i "s#../tut#./tut#g" /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/exercises.sqc find /<>/debian/hmmer2/usr/share/doc/hmmer2/examples -name 'Makefile' | xargs sed -i "s^/<>^.^g" make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/hmmer2/usr/bin/hmm2calibrate: Unknown DWARF DW_FORM_0x1f20 c67d156232b3f86209c1eb88343b8f7861d0e02f debugedit: debian/hmmer2/usr/bin/hmm2index: Unknown DWARF DW_FORM_0x1f20 4f3287fcec35a3f7aa97930aae77a13c463c2675 debugedit: debian/hmmer2/usr/bin/hmm2align: Unknown DWARF DW_FORM_0x1f20 1eef2280daa79fcf8ba8f65851da1eef7d38f77a debugedit: debian/hmmer2/usr/bin/hmm2build: Unknown DWARF DW_FORM_0x1f20 ceba98a5eb884ca0210733c2cb15538fe3c54b06 debugedit: debian/hmmer2/usr/bin/hmm2fetch: Unknown DWARF DW_FORM_0x1f20 cc48b46f19c25c61ab7646488f94792b1d004504 debugedit: debian/hmmer2/usr/bin/hmm2convert: Unknown DWARF DW_FORM_0x1f20 0c225022b8c09d46dd0d4c5e8fdcd03eaa81858b debugedit: debian/hmmer2/usr/bin/hmm2pfam: Unknown DWARF DW_FORM_0x1f20 7b074e90dee5fc3b2796994c357e9f006e6a5191 debugedit: debian/hmmer2/usr/bin/hmm2emit: Unknown DWARF DW_FORM_0x1f20 9232e90feb7b6feeb7eb943ca52c859e28df1076 debugedit: debian/hmmer2/usr/bin/hmm2search: Unknown DWARF DW_FORM_0x1f20 001f2e240a14eab2f818bf5f74266b5f053e7b97 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libhmmer2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing hmmer2 (in debian/hmmer2); do_strip: , oemstrip: pkgstriptranslations: processing libhmmer2-dev (in debian/libhmmer2-dev); do_strip: , oemstrip: pkgstriptranslations: processing hmmer2-dbgsym (in debian/.debhelper/hmmer2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer2/DEBIAN/control, package hmmer2, directory debian/hmmer2 pkgstripfiles: processing control file: debian/libhmmer2-dev/DEBIAN/control, package libhmmer2-dev, directory debian/libhmmer2-dev .. removing usr/share/doc/libhmmer2-dev/changelog.gz .. removing usr/share/doc/hmmer2/changelog.gz INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... pkgstripfiles: Running PNG optimization (using 4 cpus) for package hmmer2 ... pkgstripfiles: processing control file: debian/.debhelper/hmmer2/dbgsym-root/DEBIAN/control, package hmmer2-dbgsym, directory debian/.debhelper/hmmer2/dbgsym-root dpkg-deb: building package 'hmmer2-dbgsym' in 'debian/.debhelper/scratch-space/build-hmmer2/hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.deb'. pkgstripfiles: No PNG files. dpkg-deb: building package 'hmmer2' in '../hmmer2_2.3.2+dfsg-8_ppc64el.deb'. Renaming hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.deb to hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb pkgstripfiles: Running PNG optimization (using 4 cpus) for package libhmmer2-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhmmer2-dev' in '../libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb'. dpkg-genbuildinfo --build=any -O../hmmer2_2.3.2+dfsg-8_ppc64el.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../hmmer2_2.3.2+dfsg-8_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-13T11:36:55Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_ppc64el.changes: ------------------------------------ Format: 1.8 Date: Sun, 11 Dec 2022 16:58:23 +0100 Source: hmmer2 Binary: hmmer2 libhmmer2-dev Built-For-Profiles: noudeb Architecture: ppc64el Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hmmer2 - profile hidden Markov models for protein sequence analysis libhmmer2-dev - profile hidden Markov models for protein sequence analysis (devel Closes: 1025739 Changes: hmmer2 (2.3.2+dfsg-8) unstable; urgency=medium . * Provide configure.ac as source for configure Closes: #1025739 * Fix watchfile to detect new versions on github * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 6e08019373794fc1543350f08a62287fb03fc368 650644 hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb de1420b28bba8fe85c8b1a0c7cba4970951ff3a4 6272 hmmer2_2.3.2+dfsg-8_ppc64el.buildinfo 598509b19452ac74222397a04ae0f7861f0e667d 348342 hmmer2_2.3.2+dfsg-8_ppc64el.deb 79e69b4f7e5321272d5305e47de6e29ccd4b1ce5 128642 libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb Checksums-Sha256: 855b92abf8628fdb5f9694af130e8e5979321e2c0c09ec875cce2da62c3ebc10 650644 hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb c88775efd8093382a32312dcdbcbf29d5ae465f22af4e2d5e76e9046dc5c9cd7 6272 hmmer2_2.3.2+dfsg-8_ppc64el.buildinfo c588d992ca70fbadd9d83688673a2b82343d62411f2bfc9eb69d4240f0572704 348342 hmmer2_2.3.2+dfsg-8_ppc64el.deb 0954a11a30164d897443b59bc02aaf351c17db8af9c9e646ac79127a385cea22 128642 libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb Files: 2867988aa4799c735a0fbdb0a10867b7 650644 debug optional hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb 70c064e3b53767316495fa8ca69eb209 6272 science optional hmmer2_2.3.2+dfsg-8_ppc64el.buildinfo ba685b7c8292e6d821d18668362181a8 348342 science optional hmmer2_2.3.2+dfsg-8_ppc64el.deb 1433c2e41cb9a26315f662fb2bee977c 128642 libdevel optional libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb /<>/hmmer2_2.3.2+dfsg-8_ppc64el.changes.new could not be renamed to /<>/hmmer2_2.3.2+dfsg-8_ppc64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer2 Binary: hmmer2 hmmer2-dbgsym libhmmer2-dev Architecture: ppc64el Version: 2.3.2+dfsg-8 Checksums-Md5: 2867988aa4799c735a0fbdb0a10867b7 650644 hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb ba685b7c8292e6d821d18668362181a8 348342 hmmer2_2.3.2+dfsg-8_ppc64el.deb 1433c2e41cb9a26315f662fb2bee977c 128642 libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb Checksums-Sha1: 6e08019373794fc1543350f08a62287fb03fc368 650644 hmmer2-dbgsym_2.3.2+dfsg-8_ppc64el.ddeb 598509b19452ac74222397a04ae0f7861f0e667d 348342 hmmer2_2.3.2+dfsg-8_ppc64el.deb 79e69b4f7e5321272d5305e47de6e29ccd4b1ce5 128642 libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb Checksums-Sha256: 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9.1-1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.80), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-exec (= 0.27), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-1), dpkg (= 1.21.12ubuntu2), dpkg-dev (= 1.21.12ubuntu2), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-10ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-10ubuntu1), gcc-12-base (= 12.2.0-10ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-10ubuntu1), libatomic1 (= 12.2.0-10ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 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rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.2.9-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu3) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1670774303" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_ppc64el.deb ------------------------------- new Debian package, version 2.0. size 348342 bytes: control archive=2534 bytes. 924 bytes, 21 lines control 5093 bytes, 69 lines md5sums Package: hmmer2 Version: 2.3.2+dfsg-8 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1685 Depends: libc6 (>= 2.34), libsquid1 (>= 1.9g+cvs20050121) Recommends: biosquid Suggests: hmmer2-doc (>= 2.3.2+dfsg-8) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/bin/ -rwxr-xr-x root/root 134256 2022-12-11 15:58 ./usr/bin/hmm2align -rwxr-xr-x root/root 136368 2022-12-11 15:58 ./usr/bin/hmm2build -rwxr-xr-x root/root 134192 2022-12-11 15:58 ./usr/bin/hmm2calibrate -rwxr-xr-x root/root 134048 2022-12-11 15:58 ./usr/bin/hmm2convert -rwxr-xr-x root/root 133968 2022-12-11 15:58 ./usr/bin/hmm2emit -rwxr-xr-x root/root 68144 2022-12-11 15:58 ./usr/bin/hmm2fetch -rwxr-xr-x root/root 68048 2022-12-11 15:58 ./usr/bin/hmm2index -rwxr-xr-x root/root 135072 2022-12-11 15:58 ./usr/bin/hmm2pfam -rwxr-xr-x root/root 134864 2022-12-11 15:58 ./usr/bin/hmm2search drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmindex -> ../../bin/hmm2index lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmpfam -> ../../bin/hmm2pfam drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/ -rw-r--r-- root/root 2293 2022-12-11 15:58 ./usr/share/doc/hmmer2/00README -rw-r--r-- root/root 344 2022-12-11 15:58 ./usr/share/doc/hmmer2/NEWS.Debian.gz lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/NOTES.gz -> changelog.gz -rw-r--r-- root/root 615 2022-12-11 15:58 ./usr/share/doc/hmmer2/README.Debian -rw-r--r-- root/root 578 2022-12-11 15:58 ./usr/share/doc/hmmer2/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/hmmer2/copyright drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/ -rw-r--r-- 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./usr/share/doc/hmmer2/examples/weeviterbi_test.c -rw-r--r-- root/root 27073 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.hmm -rw-r--r-- root/root 535 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.seq drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/man1/ -rw-r--r-- root/root 1748 2022-12-11 15:58 ./usr/share/man/man1/hmm2align.1.gz -rw-r--r-- root/root 4765 2022-12-11 15:58 ./usr/share/man/man1/hmm2build.1.gz -rw-r--r-- root/root 1703 2022-12-11 15:58 ./usr/share/man/man1/hmm2calibrate.1.gz -rw-r--r-- root/root 1113 2022-12-11 15:58 ./usr/share/man/man1/hmm2convert.1.gz -rw-r--r-- root/root 1364 2022-12-11 15:58 ./usr/share/man/man1/hmm2emit.1.gz -rw-r--r-- root/root 945 2022-12-11 15:58 ./usr/share/man/man1/hmm2fetch.1.gz -rw-r--r-- root/root 752 2022-12-11 15:58 ./usr/share/man/man1/hmm2index.1.gz -rw-r--r-- root/root 3395 2022-12-11 15:58 ./usr/share/man/man1/hmm2pfam.1.gz -rw-r--r-- root/root 3046 2022-12-11 15:58 ./usr/share/man/man1/hmm2search.1.gz -rw-r--r-- root/root 1691 2022-12-11 15:58 ./usr/share/man/man1/hmmer2.1.gz libhmmer2-dev_2.3.2+dfsg-8_ppc64el.deb -------------------------------------- new Debian package, version 2.0. size 128642 bytes: control archive=1005 bytes. 955 bytes, 23 lines control 629 bytes, 9 lines md5sums Package: libhmmer2-dev Source: hmmer2 Version: 2.3.2+dfsg-8 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 419 Section: libdevel Priority: optional Multi-Arch: same Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (devel) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains header files and static library that can be used to link against libhmmer. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/hmmer2/ -rw-r--r-- root/root 4524 2022-12-11 15:58 ./usr/include/hmmer2/config.h -rw-r--r-- root/root 16093 2022-12-11 15:58 ./usr/include/hmmer2/funcs.h -rw-r--r-- root/root 1201 2003-10-04 19:01 ./usr/include/hmmer2/globals.h -rw-r--r-- root/root 1733 2003-10-04 19:01 ./usr/include/hmmer2/postprob.h -rw-r--r-- root/root 24821 2003-10-04 19:01 ./usr/include/hmmer2/structs.h drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/powerpc64le-linux-gnu/ -rw-r--r-- root/root 357912 2022-12-11 15:58 ./usr/lib/powerpc64le-linux-gnu/libhmmer.a drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/ -rw-r--r-- root/root 262 2022-12-11 15:58 ./usr/lib/powerpc64le-linux-gnu/pkgconfig/libhmmer2.pc drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/NOTES.gz -> changelog.gz -rw-r--r-- root/root 582 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build Type: any Build-Space: 20236 Build-Time: 27 Distribution: lunar-proposed Host Architecture: ppc64el Install-Time: 24 Job: hmmer2_2.3.2+dfsg-8.dsc Machine Architecture: ppc64el Package: hmmer2 Package-Time: 52 Source-Version: 2.3.2+dfsg-8 Space: 20236 Status: successful Version: 2.3.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2022-12-13T11:36:55Z Build needed 00:00:52, 20236k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=ppc64el PACKAGEBUILD-24934575 Scanning for processes to kill in build PACKAGEBUILD-24934575