https://launchpad.net/ubuntu/+source/hmmer2/2.3.2+dfsg-8/+build/24934576 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux riscv64-qemu-lgw01-072 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 Buildd toolchain package versions: launchpad-buildd_222~591~ubuntu20.04.1 python3-lpbuildd_222~591~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git_1:2.25.1-1ubuntu3.2 dpkg-dev_1.19.7ubuntu3 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Dec 11:43:14 ntpdate[810212]: adjust time server 10.211.37.1 offset 0.003646 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 --image-type chroot /home/buildd/filecache-default/7a8480de4192e7bbb3235935778c40f60366dfdf Creating target for build PACKAGEBUILD-24934576 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 Starting target for build PACKAGEBUILD-24934576 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24934576 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 Updating target for build PACKAGEBUILD-24934576 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 Packages [1302 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe riscv64 Packages [14.1 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5866 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 Packages [100 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 Packages [1259 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [416 kB] Fetched 24.1 MB in 33s (742 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-common binutils-riscv64-linux-gnu ca-certificates coreutils cpp-12 dash debconf dpkg dpkg-dev g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libkmod2 liblz4-1 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils zlib1g 41 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 68.9 MB of archives. After this operation, 46.4 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 coreutils riscv64 9.1-1ubuntu1 [1310 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg riscv64 1.21.12ubuntu2 [1299 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main riscv64 dash riscv64 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [82.4 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libperl5.36 riscv64 5.36.0-6 [4196 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl riscv64 5.36.0-6 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 perl-base riscv64 5.36.0-6 [1649 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 zlib1g riscv64 1:1.2.13.dfsg-1ubuntu3 [54.0 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 sysvinit-utils riscv64 3.05-7ubuntu1 [26.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd-sysv riscv64 252.1-1ubuntu1 [11.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcc1-0 riscv64 12.2.0-10ubuntu1 [42.9 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf-nobfd0 riscv64 2.39.50.20221211-0ubuntu1 [88.1 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libctf0 riscv64 2.39.50.20221211-0ubuntu1 [87.1 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main riscv64 libjansson4 riscv64 2.14-2 [29.0 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-riscv64-linux-gnu riscv64 2.39.50.20221211-0ubuntu1 [825 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libbinutils riscv64 2.39.50.20221211-0ubuntu1 [456 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils-common riscv64 2.39.50.20221211-0ubuntu1 [217 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 binutils riscv64 2.39.50.20221211-0ubuntu1 [3034 B] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgomp1 riscv64 12.2.0-10ubuntu1 [111 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libatomic1 riscv64 12.2.0-10ubuntu1 [7858 B] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libasan8 riscv64 12.2.0-10ubuntu1 [2333 kB] Get:22 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12-base riscv64 12.2.0-10ubuntu1 [19.6 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++6 riscv64 12.2.0-10ubuntu1 [674 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 g++-12 riscv64 12.2.0-10ubuntu1 [9554 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libstdc++-12-dev riscv64 12.2.0-10ubuntu1 [4888 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-12-dev riscv64 12.2.0-10ubuntu1 [2633 kB] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 gcc-12 riscv64 12.2.0-10ubuntu1 [16.3 MB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 cpp-12 riscv64 12.2.0-10ubuntu1 [8287 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libgcc-s1 riscv64 12.2.0-10ubuntu1 [44.1 kB] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 debconf all 1.5.80 [125 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libssl3 riscv64 3.0.5-2ubuntu2 [1437 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libkmod2 riscv64 30+20220905-1ubuntu1 [43.2 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libcap2 riscv64 1:2.63-1 [24.6 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 liblz4-1 riscv64 1.9.4-1 [74.7 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 systemd riscv64 252.1-1ubuntu1 [2807 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd-shared riscv64 252.1-1ubuntu1 [1555 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libsystemd0 riscv64 252.1-1ubuntu1 [298 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libudev1 riscv64 252.1-1ubuntu1 [81.3 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 adduser all 3.129ubuntu1 [59.0 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 openssl riscv64 3.0.5-2ubuntu2 [1140 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main riscv64 ca-certificates all 20211016ubuntu1 [141 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:43 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 linux-libc-dev riscv64 5.19.0-23.24 [1314 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.9 MB in 11s (6030 kB/s) (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_riscv64.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_riscv64.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_riscv64.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13557 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-6_riscv64.deb ... Unpacking perl (5.36.0-6) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. 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Setting up perl-modules-5.36 (5.36.0-6) ... Setting up libatomic1:riscv64 (12.2.0-10ubuntu1) ... Setting up libasan8:riscv64 (12.2.0-10ubuntu1) ... Setting up libbinutils:riscv64 (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:riscv64 (12.2.0-10ubuntu1) ... Setting up libperl5.36:riscv64 (5.36.0-6) ... Setting up libkmod2:riscv64 (30+20220905-1ubuntu1) ... Setting up libctf0:riscv64 (2.39.50.20221211-0ubuntu1) ... Setting up binutils-riscv64-linux-gnu (2.39.50.20221211-0ubuntu1) ... Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgcc-12-dev:riscv64 (12.2.0-10ubuntu1) ... Setting up libsystemd-shared:riscv64 (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up libstdc++-12-dev:riscv64 (12.2.0-10ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15476 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24934576 riscv64 lunar-proposed -c chroot:build-PACKAGEBUILD-24934576 --arch=riscv64 --dist=lunar-proposed --nolog hmmer2_2.3.2+dfsg-8.dsc Initiating build PACKAGEBUILD-24934576 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 sbuild (Debian sbuild) 0.79.0 (05 February 2020) on riscv64-qemu-lgw01-072.buildd +==============================================================================+ | hmmer2 2.3.2+dfsg-8 (riscv64) Tue, 13 Dec 2022 11:48:57 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Machine Architecture: riscv64 Host Architecture: riscv64 Build Architecture: riscv64 Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24934576/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-ehAI3n/resolver-C4vGmP' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hmmer2_2.3.2+dfsg-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/hmmer2-ehAI3n/hmmer2-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-ehAI3n' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [413 B] Get:5 copy:/<>/apt_archive ./ Packages [493 B] Fetched 1863 B in 1s (3255 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff biosquid libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After this operation, 66.1 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [714 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main riscv64 libelf1 riscv64 0.188-1 [47.0 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main riscv64 libicu71 riscv64 71.1-3ubuntu1 [10.5 MB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 libxml2 riscv64 2.9.14+dfsg-1.1 [598 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main riscv64 bsdextrautils riscv64 2.38.1-4ubuntu1 [81.6 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic-mgc riscv64 1:5.41-4 [257 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main riscv64 libmagic1 riscv64 1:5.41-4 [88.7 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main riscv64 file riscv64 1:5.41-4 [20.6 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main riscv64 gettext-base riscv64 0.21-10 [38.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main riscv64 libuchardet0 riscv64 0.0.7-1build2 [78.9 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main riscv64 groff-base riscv64 1.22.4-9 [906 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main riscv64 libpipeline1 riscv64 1.5.7-1 [26.8 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main riscv64 man-db riscv64 2.11.1-1 [1178 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main riscv64 m4 riscv64 1.4.19-1 [243 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main riscv64 autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main riscv64 autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main riscv64 automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main riscv64 autopoint all 0.21-10 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main riscv64 libtool all 2.4.7-5 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main riscv64 libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main riscv64 libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main riscv64 libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:26 http://ftpmaster.internal/ubuntu lunar/main riscv64 libdw1 riscv64 0.188-1 [227 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main riscv64 debugedit riscv64 1:5.0-5 [48.8 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main riscv64 dwz riscv64 0.14+20220924-2 [115 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main riscv64 gettext riscv64 0.21-10 [811 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main riscv64 intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main riscv64 po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main riscv64 debhelper all 13.10.1ubuntu1 [924 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main riscv64 libperl4-corelibs-perl all 0.004-3 [37.9 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 libpkgconf3 riscv64 1.8.0-11 [26.1 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libsquid1 riscv64 1.9g+cvs20050121-12 [68.2 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/universe riscv64 libsquid-dev riscv64 1.9g+cvs20050121-12 [225 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 pkgconf-bin riscv64 1.8.0-11 [20.2 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/universe riscv64 pkgconf riscv64 1.8.0-11 [16.4 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main riscv64 pkg-config riscv64 1.8.0-11 [5414 B] Get:40 http://ftpmaster.internal/ubuntu lunar/universe riscv64 rename all 1.31-1 [20.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main riscv64 dh-exec riscv64 0.27 [24.9 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.6 MB in 4s (5179 kB/s) Selecting previously unselected package libelf1:riscv64. (Reading database ... 15476 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-1_riscv64.deb ... Unpacking libelf1:riscv64 (0.188-1) ... Selecting previously unselected package libicu71:riscv64. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_riscv64.deb ... Unpacking libicu71:riscv64 (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:riscv64. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_riscv64.deb ... Unpacking libxml2:riscv64 (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_riscv64.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_riscv64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:riscv64. Preparing to unpack .../05-libmagic1_1%3a5.41-4_riscv64.deb ... 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libperl4-corelibs-perl (0.004-3) ... Setting up libmagic1:riscv64 (1:5.41-4) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up rename (1.31-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.41-4) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:riscv64 (1.8.0-11) ... Setting up autopoint (0.21-10) ... Setting up pkgconf-bin (1.8.0-11) ... Setting up autoconf (2.71-2) ... Setting up libsquid1 (1.9g+cvs20050121-12) ... Setting up libuchardet0:riscv64 (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:riscv64 (0.188-1) ... Setting up libxml2:riscv64 (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:riscv64 (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libsquid-dev (1.9g+cvs20050121-12) ... Setting up pkgconf:riscv64 (1.8.0-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:riscv64 (1.8.0-11) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up dh-exec (0.27) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.13.0-1019-generic #21~20.04.1-Ubuntu SMP Thu Mar 24 22:36:01 UTC 2022 riscv64 (riscv64) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221211-0ubuntu1 binutils-common_2.39.50.20221211-0ubuntu1 binutils-riscv64-linux-gnu_2.39.50.20221211-0ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.80 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.12ubuntu2 dpkg-dev_1.21.12ubuntu2 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-10ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-10ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39.50.20221211-0ubuntu1 libblkid1_2.38.1-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.63-1 libcc1-0_12.2.0-10ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.50.20221211-0ubuntu1 libctf0_2.39.50.20221211-0ubuntu1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.12ubuntu2 libdw1_0.188-1 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10ubuntu1 libgcc-s1_12.2.0-10ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-10ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl4-corelibs-perl_0.004-3 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-11 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libreadline8_8.2-1.2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.0-1 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.1-1ubuntu1 libsystemd0_252.1-1ubuntu1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libuchardet0_0.0.7-1build2 libudev1_252.1-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1ubuntu1 pkg-config_1.8.0-11 pkgbinarymangler_149 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1.2 rename_1.31-1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hmmer2 Binary: hmmer2, hmmer2-doc, libhmmer2-dev Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Laszlo Kajan Homepage: http://hmmer.janelia.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename Package-List: hmmer2 deb science optional arch=any hmmer2-doc deb doc optional arch=all libhmmer2-dev deb libdevel optional arch=any Checksums-Sha1: 7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 6d6d658fa934eb53c22780e16c7899171587dbcc 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 9cfce31a7ad72d780abfd68ddef533c87ae4388dc9e9e7e9680630f25791ad0d 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Files: 4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz a223d42d33db0c92ee26caccbc9a706b 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOV/24RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVhBAAjOZcCVOpWRuw207+UT5tjOryAIKyVFCr 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dpkg-source: info: extracting hmmer2 in /<> dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch dpkg-source: info: applying add-runstatedir-option.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=8 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24934576 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24934576 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24934576 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e configure_not_used ] ; then mv configure_not_used configure; fi rm -f configure.ac make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cp -a debian/missing-sources/configure.ac . mv configure configure_not_used dh_autoreconf configure.ac:111: warning: underquoted definition of CHECK_GNU_MAKE configure.ac:111: run info Automake 'Extending aclocal' configure.ac:111: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:153: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:153: the top level configure.ac:479: warning: The macro `AC_LANG_C' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level configure.ac:479: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm ./configure --build=riscv64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/riscv64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-lfs configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking build system type... riscv64-unknown-linux-gnu checking host system type... riscv64-unknown-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... yes checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/<>' dh_auto_build -a make -j8 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/src' gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c core_algorithms.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c debug.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c display.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emit.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emulation.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c fast_algorithms.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c histogram.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmio.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c mathsupport.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c masks.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c misc.c histogram.c: In function ‘ExtremeValueSetHistogram’: histogram.c:725:23: warning: implicit declaration of function ‘IncompleteGamma’ [-Wimplicit-function-declaration] 725 | h->chip = (float) IncompleteGamma((double)(nbins-1-ndegrees)/2., | ^~~~~~~~~~~~~~~ mathsupport.c: In function ‘Logp_cvec’: mathsupport.c:229:15: warning: implicit declaration of function ‘Gammln’ [-Wimplicit-function-declaration] 229 | lnp += Gammln(alpha[x] + cvec[x]); | ^~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c modelmakers.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan7.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan9.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c postprob.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c prior.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c pvm.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c threads.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c tophits.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c trace.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmbuild.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmcalibrate.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmconvert.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmemit.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmfetch.c hmmcalibrate.c: In function ‘workpool_start’: hmmcalibrate.c:646:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 646 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmindex.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmpfam.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmsearch.c hmmpfam.c: In function ‘workpool_start’: hmmpfam.c:1032:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1032 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ hmmsearch.c: In function ‘workpool_start’: hmmsearch.c:1021:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1021 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/testsuite' gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c evd_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c masks_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c parsingviterbi_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c tophits_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c trace_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c viterbi_exercise.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c weeviterbi_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o masks_test -L../src masks_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o alignalign_test -L../src alignalign_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o tophits_test -L../src tophits_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o trace_test -L../src trace_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o weeviterbi_test -L../src weeviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o parsingviterbi_test -L../src parsingviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o viterbi_exercise -L../src viterbi_exercise.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o evd_test -L../src evd_test.o -lhmmer `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/<>/debian/tmp make -j8 install DESTDIR=/<>/hmmer2-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/<>/hmmer2-2.3.2\+dfsg/debian/tmp make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/bin mkdir -p /<>/debian/tmp/share/man/man1 for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch ; do\ cp src/$file /<>/debian/tmp/bin/;\ done for file in hmmer hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch; do\ cp documentation/man/$file.man /<>/debian/tmp/share/man/man1/$file.1;\ done make[2]: Leaving directory '/<>' # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1: rename 's/^hmm/hmm2/;' /<>/debian/tmp/bin/* cd /<>/debian/tmp/bin; rename 's/^hmm/hmm2/;' * cd /<>/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * mv /<>/debian/tmp/share/man/man1/hmm2er.1 /<>/debian/tmp/share/man/man1/hmmer2.1 # lkajan: resolve man page hypen issue: sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' /<>/debian/tmp/share/man/man1/* make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k NOTES make[1]: Leaving directory '/<>' debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/hmmer2/usr/share/doc/hmmer2/examples; sed -i "s#hmm#hmm2#g" testsuite/exercises.sqc cp -a testsuite/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/; mkdir /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; cp -a tutorial/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; sed -i "s#../tut#./tut#g" /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/exercises.sqc find /<>/debian/hmmer2/usr/share/doc/hmmer2/examples -name 'Makefile' | xargs sed -i "s^/<>^.^g" make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/hmmer2/usr/bin/hmm2calibrate: Unknown DWARF DW_FORM_0x1f21 f2fad7d3fdf5c6d39fbb5f570b7c444ac41822ed debugedit: debian/hmmer2/usr/bin/hmm2emit: Unknown DWARF DW_FORM_0x1f21 f354aa3a60000578cec457f5dc18162225e395dd debugedit: debian/hmmer2/usr/bin/hmm2fetch: Unknown DWARF DW_FORM_0x1f20 15f14b733a74a77861151c65d09918ac2aa3d497 debugedit: debian/hmmer2/usr/bin/hmm2pfam: Unknown DWARF DW_FORM_0x1f20 3a355acf571ae0b1fbbd3967456b709687c80c5f debugedit: debian/hmmer2/usr/bin/hmm2align: Unknown DWARF DW_FORM_0x1f21 66f7d68828a17cbfae9198e59acbf490af145f88 debugedit: debian/hmmer2/usr/bin/hmm2build: Unknown DWARF DW_FORM_0x1f20 4a724533cb8c3be8aedd36fc56c996e66e945d8c debugedit: debian/hmmer2/usr/bin/hmm2search: Unknown DWARF DW_FORM_0x1f20 4a3e7f0f002c963fddd7f66657910cba07763ff1 debugedit: debian/hmmer2/usr/bin/hmm2index: Unknown DWARF DW_FORM_0x1f21 6be7a5b9d9743524e919a23ad13f4cfcd4b3ba44 debugedit: debian/hmmer2/usr/bin/hmm2convert: Unknown DWARF DW_FORM_0x1f20 74bf67ca1e24114ef6eed5d53781fbe8f98b6b21 debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/masks_test: Unknown DWARF DW_FORM_0x1f21 8df77754ca7c90bdc5e5e5f17209a470a0ba332f debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/evd_test: Unknown DWARF DW_FORM_0x1f20 b1afb05e5dc9094c5988f995b355cbb7197fc0d3 debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/parsingviterbi_test: Unknown DWARF DW_FORM_0x1f20 048a18662486ecb34db154fa19c3c8450223e89a debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/tophits_test: Unknown DWARF DW_FORM_0x1f21 ec43b61f86ae4b4fa4d411e7937af8b0b3ae462e debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/alignalign_test: Unknown DWARF DW_FORM_0x1f20 731c2d8e34a8e8ff72fcdc227a40fceb268235ad debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/trace_test: Unknown DWARF DW_FORM_0x1f20 d2adb904558b89c32cf12a7009a5d3ae71795079 debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/viterbi_exercise: Unknown DWARF DW_FORM_0x1f20 0c82400da65f321548ca57ff8d452d38b320053f debugedit: debian/hmmer2/usr/share/doc/hmmer2/examples/weeviterbi_test: Unknown DWARF DW_FORM_0x1f20 4aa4100b6aeab6017aaba01fbabf525e0411f32f dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libhmmer2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing hmmer2 (in debian/hmmer2); do_strip: , oemstrip: pkgstriptranslations: processing libhmmer2-dev (in debian/libhmmer2-dev); do_strip: , oemstrip: pkgstriptranslations: processing hmmer2-dbgsym (in debian/.debhelper/hmmer2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libhmmer2-dev/DEBIAN/control, package libhmmer2-dev, directory debian/libhmmer2-dev pkgstripfiles: processing control file: debian/hmmer2/DEBIAN/control, package hmmer2, directory debian/hmmer2 .. removing usr/share/doc/libhmmer2-dev/changelog.gz .. removing usr/share/doc/hmmer2/changelog.gz INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... pkgstripfiles: Running PNG optimization (using 8 cpus) for package hmmer2 ... pkgstripfiles: processing control file: debian/.debhelper/hmmer2/dbgsym-root/DEBIAN/control, package hmmer2-dbgsym, directory debian/.debhelper/hmmer2/dbgsym-root pkgstripfiles: No PNG files. dpkg-deb: building package 'hmmer2-dbgsym' in 'debian/.debhelper/scratch-space/build-hmmer2/hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.deb'. dpkg-deb: building package 'hmmer2' in '../hmmer2_2.3.2+dfsg-8_riscv64.deb'. pkgstripfiles: Running PNG optimization (using 8 cpus) for package libhmmer2-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhmmer2-dev' in '../libhmmer2-dev_2.3.2+dfsg-8_riscv64.deb'. Renaming hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.deb to hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.ddeb dpkg-genbuildinfo --build=any -O../hmmer2_2.3.2+dfsg-8_riscv64.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../hmmer2_2.3.2+dfsg-8_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-13T11:54:58Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_riscv64.changes: ------------------------------------ Format: 1.8 Date: Sun, 11 Dec 2022 16:58:23 +0100 Source: hmmer2 Binary: hmmer2 libhmmer2-dev Built-For-Profiles: noudeb Architecture: riscv64 Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hmmer2 - profile hidden Markov models for protein sequence analysis libhmmer2-dev - profile hidden Markov models for protein sequence analysis (devel Closes: 1025739 Changes: hmmer2 (2.3.2+dfsg-8) unstable; urgency=medium . * Provide configure.ac as source for configure Closes: #1025739 * Fix watchfile to detect new versions on github * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: bd0dcdf7c97f76e6e9a77301fb49b5d6de1f6408 1912314 hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.ddeb c217c8755b275ee0e6c9b899564bab1aa424c8ae 6082 hmmer2_2.3.2+dfsg-8_riscv64.buildinfo 8b8e449fc5533f757f6b3d1ab62579998542b73f 451828 hmmer2_2.3.2+dfsg-8_riscv64.deb e0730584fa3643aa0973a35ffd576e76295ae160 204316 libhmmer2-dev_2.3.2+dfsg-8_riscv64.deb Checksums-Sha256: abd0747ceb6815135920c008ce122b3e60ab8078df59fada210fd58503d3d1b8 1912314 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+------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer2 Binary: hmmer2 hmmer2-dbgsym libhmmer2-dev Architecture: riscv64 Version: 2.3.2+dfsg-8 Checksums-Md5: 5188c67e92db16465b8585aaf15a5a02 1912314 hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.ddeb ab259c92ca61c8cae54ef14b71bebb24 451828 hmmer2_2.3.2+dfsg-8_riscv64.deb 2168ca24c408569d25cd4cd9abe9c995 204316 libhmmer2-dev_2.3.2+dfsg-8_riscv64.deb Checksums-Sha1: bd0dcdf7c97f76e6e9a77301fb49b5d6de1f6408 1912314 hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.ddeb 8b8e449fc5533f757f6b3d1ab62579998542b73f 451828 hmmer2_2.3.2+dfsg-8_riscv64.deb e0730584fa3643aa0973a35ffd576e76295ae160 204316 libhmmer2-dev_2.3.2+dfsg-8_riscv64.deb Checksums-Sha256: abd0747ceb6815135920c008ce122b3e60ab8078df59fada210fd58503d3d1b8 1912314 hmmer2-dbgsym_2.3.2+dfsg-8_riscv64.ddeb 95390d6ef61827df4b8fbb247bc8dfd20ac3fef69683785b1b6e02c9afeb1aff 451828 hmmer2_2.3.2+dfsg-8_riscv64.deb 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SOURCE_DATE_EPOCH="1670774303" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_riscv64.deb ------------------------------- new Debian package, version 2.0. size 451828 bytes: control archive=2883 bytes. 924 bytes, 21 lines control 6359 bytes, 85 lines md5sums Package: hmmer2 Version: 2.3.2+dfsg-8 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2833 Depends: libc6 (>= 2.34), libsquid1 (>= 1.9g+cvs20050121) Recommends: biosquid Suggests: hmmer2-doc (>= 2.3.2+dfsg-8) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/bin/ -rwxr-xr-x root/root 122936 2022-12-11 15:58 ./usr/bin/hmm2align -rwxr-xr-x root/root 133272 2022-12-11 15:58 ./usr/bin/hmm2build -rwxr-xr-x root/root 127008 2022-12-11 15:58 ./usr/bin/hmm2calibrate -rwxr-xr-x root/root 122616 2022-12-11 15:58 ./usr/bin/hmm2convert -rwxr-xr-x root/root 122568 2022-12-11 15:58 ./usr/bin/hmm2emit -rwxr-xr-x root/root 122240 2022-12-11 15:58 ./usr/bin/hmm2fetch -rwxr-xr-x root/root 122208 2022-12-11 15:58 ./usr/bin/hmm2index -rwxr-xr-x root/root 127832 2022-12-11 15:58 ./usr/bin/hmm2pfam -rwxr-xr-x root/root 127632 2022-12-11 15:58 ./usr/bin/hmm2search drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmindex -> ../../bin/hmm2index lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmpfam -> ../../bin/hmm2pfam drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/ -rw-r--r-- root/root 2293 2022-12-11 15:58 ./usr/share/doc/hmmer2/00README -rw-r--r-- root/root 344 2022-12-11 15:58 ./usr/share/doc/hmmer2/NEWS.Debian.gz lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/NOTES.gz -> changelog.gz -rw-r--r-- root/root 615 2022-12-11 15:58 ./usr/share/doc/hmmer2/README.Debian -rw-r--r-- root/root 578 2022-12-11 15:58 ./usr/share/doc/hmmer2/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/hmmer2/copyright drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/ -rw-r--r-- root/root 1874 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/Makefile -rw-r--r-- root/root 1725 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/Makefile.in -rw-r--r-- root/root 392 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.fa -rw-r--r-- root/root 126 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nfa -rw-r--r-- root/root 168 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nslx -rw-r--r-- root/root 2122 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pam -rw-r--r-- root/root 2816 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pri -rw-r--r-- root/root 297 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.slx -rw-r--r-- root/root 3271 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.sto -rw-r--r-- root/root 2684 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/README -rwxr-xr-x root/root 97720 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/alignalign_test -rw-r--r-- root/root 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2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.hmm -rw-r--r-- root/root 20514 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.seed -rwxr-xr-x root/root 60672 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/masks_test -rw-r--r-- root/root 3926 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/masks_test.c -rw-r--r-- root/root 53696 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/masks_test.o -rwxr-xr-x root/root 97600 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/parsingviterbi_test -rw-r--r-- root/root 5491 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/parsingviterbi_test.c -rw-r--r-- root/root 64952 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/parsingviterbi_test.o -rwxr-xr-x root/root 17674 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/sqc -rwxr-xr-x root/root 876 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/test1-conversion.pl -rw-r--r-- root/root 27349 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/titin.fa -rwxr-xr-x root/root 15128 2022-12-11 15:58 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./usr/share/doc/hmmer2/examples/viterbi_exercise -rw-r--r-- root/root 5363 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/viterbi_exercise.c -rw-r--r-- root/root 58448 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/viterbi_exercise.o -rwxr-xr-x root/root 97712 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/weeviterbi_test -rw-r--r-- root/root 5202 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.c -rw-r--r-- root/root 27073 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.hmm -rw-r--r-- root/root 62096 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/weeviterbi_test.o -rw-r--r-- root/root 535 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.seq drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/man1/ -rw-r--r-- root/root 1748 2022-12-11 15:58 ./usr/share/man/man1/hmm2align.1.gz -rw-r--r-- root/root 4765 2022-12-11 15:58 ./usr/share/man/man1/hmm2build.1.gz -rw-r--r-- root/root 1703 2022-12-11 15:58 ./usr/share/man/man1/hmm2calibrate.1.gz -rw-r--r-- root/root 1113 2022-12-11 15:58 ./usr/share/man/man1/hmm2convert.1.gz -rw-r--r-- root/root 1364 2022-12-11 15:58 ./usr/share/man/man1/hmm2emit.1.gz -rw-r--r-- root/root 945 2022-12-11 15:58 ./usr/share/man/man1/hmm2fetch.1.gz -rw-r--r-- root/root 752 2022-12-11 15:58 ./usr/share/man/man1/hmm2index.1.gz -rw-r--r-- root/root 3395 2022-12-11 15:58 ./usr/share/man/man1/hmm2pfam.1.gz -rw-r--r-- root/root 3046 2022-12-11 15:58 ./usr/share/man/man1/hmm2search.1.gz -rw-r--r-- root/root 1691 2022-12-11 15:58 ./usr/share/man/man1/hmmer2.1.gz libhmmer2-dev_2.3.2+dfsg-8_riscv64.deb -------------------------------------- new Debian package, version 2.0. size 204316 bytes: control archive=1002 bytes. 956 bytes, 23 lines control 621 bytes, 9 lines md5sums Package: libhmmer2-dev Source: hmmer2 Version: 2.3.2+dfsg-8 Architecture: riscv64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1407 Section: libdevel Priority: optional Multi-Arch: same Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (devel) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains header files and static library that can be used to link against libhmmer. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/hmmer2/ -rw-r--r-- root/root 4524 2022-12-11 15:58 ./usr/include/hmmer2/config.h -rw-r--r-- root/root 16093 2022-12-11 15:58 ./usr/include/hmmer2/funcs.h -rw-r--r-- root/root 1201 2003-10-04 19:01 ./usr/include/hmmer2/globals.h -rw-r--r-- root/root 1733 2003-10-04 19:01 ./usr/include/hmmer2/postprob.h -rw-r--r-- root/root 24821 2003-10-04 19:01 ./usr/include/hmmer2/structs.h drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/riscv64-linux-gnu/ -rw-r--r-- root/root 1369128 2022-12-11 15:58 ./usr/lib/riscv64-linux-gnu/libhmmer.a drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/riscv64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 262 2022-12-11 15:58 ./usr/lib/riscv64-linux-gnu/pkgconfig/libhmmer2.pc drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/NOTES.gz -> changelog.gz -rw-r--r-- root/root 582 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: riscv64 Build Type: any Build-Space: 38476 Build-Time: 243 Distribution: lunar-proposed Host Architecture: riscv64 Install-Time: 96 Job: hmmer2_2.3.2+dfsg-8.dsc Machine Architecture: riscv64 Package: hmmer2 Package-Time: 361 Source-Version: 2.3.2+dfsg-8 Space: 38476 Status: successful Version: 2.3.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2022-12-13T11:54:58Z Build needed 00:06:01, 38476k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 Scanning for processes to kill in build PACKAGEBUILD-24934576 RUN: /usr/share/launchpad-buildd/bin/in-target umount-chroot --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 Stopping target for build PACKAGEBUILD-24934576 RUN: /usr/share/launchpad-buildd/bin/in-target remove-build --backend=chroot --series=lunar --arch=riscv64 PACKAGEBUILD-24934576 Removing build PACKAGEBUILD-24934576