https://launchpad.net/ubuntu/+source/hmmer2/2.3.2+dfsg-8/+build/24934577 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux bos01-s390x-005 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 21:05:01 UTC 2022 s390x Buildd toolchain package versions: launchpad-buildd_223~593~ubuntu20.04.1 python3-lpbuildd_223~593~ubuntu20.04.1 sbuild_0.79.0-1ubuntu1 git-build-recipe_0.3.6 git_1:2.25.1-1ubuntu3.6 dpkg-dev_1.19.7ubuntu3.2 python3-debian_0.1.36ubuntu1. Syncing the system clock with the buildd NTP service... 13 Dec 11:39:13 ntpdate[1876]: adjust time server 10.211.37.1 offset -0.000325 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24934577 --image-type chroot /home/buildd/filecache-default/468798099027aa5e2ab21f9ad247c5e999aa6222 Creating target for build PACKAGEBUILD-24934577 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24934577 Starting target for build PACKAGEBUILD-24934577 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24934577 'deb http://ftpmaster.internal/ubuntu lunar main universe' 'deb http://ftpmaster.internal/ubuntu lunar-security main universe' 'deb http://ftpmaster.internal/ubuntu lunar-updates main universe' 'deb http://ftpmaster.internal/ubuntu lunar-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-24934577 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24934577 Updating target for build PACKAGEBUILD-24934577 Get:1 http://ftpmaster.internal/ubuntu lunar InRelease [267 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-security InRelease [90.7 kB] Get:3 http://ftpmaster.internal/ubuntu lunar-updates InRelease [90.7 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed InRelease [118 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x Packages [1318 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main Translation-en [510 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/universe s390x Packages [13.9 MB] Get:8 http://ftpmaster.internal/ubuntu lunar/universe Translation-en [5866 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x Packages [104 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main Translation-en [49.0 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x Packages [1264 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/universe Translation-en [416 kB] Fetched 24.0 MB in 10s (2454 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'sudo apt autoremove' to remove them. The following packages will be REMOVED: lsb-base* The following NEW packages will be installed: libjansson4 libperl5.36 perl-modules-5.36 The following packages will be upgraded: adduser binutils binutils-common binutils-s390x-linux-gnu ca-certificates coreutils cpp-12 dash debconf dpkg dpkg-dev g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libbinutils libcap2 libcc1-0 libctf-nobfd0 libctf0 libdpkg-perl libgcc-12-dev libgcc-s1 libgomp1 libitm1 libkmod2 liblz4-1 libssl3 libstdc++-12-dev libstdc++6 libsystemd-shared libsystemd0 libubsan1 libudev1 linux-libc-dev openssl perl perl-base systemd systemd-sysv sysvinit-utils zlib1g 43 upgraded, 3 newly installed, 1 to remove and 0 not upgraded. Need to get 67.4 MB of archives. After this operation, 47.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x coreutils s390x 9.1-1ubuntu1 [1391 kB] Get:2 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x dpkg s390x 1.21.12ubuntu2 [1333 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x dash s390x 0.5.11+git20210903+057cd650a4ed-9ubuntu1 [89.3 kB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-modules-5.36 all 5.36.0-6 [2985 kB] Get:5 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libperl5.36 s390x 5.36.0-6 [4714 kB] Get:6 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl s390x 5.36.0-6 [235 kB] Get:7 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x perl-base s390x 5.36.0-6 [1714 kB] Get:8 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x zlib1g s390x 1:1.2.13.dfsg-1ubuntu3 [65.6 kB] Get:9 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x sysvinit-utils s390x 3.05-7ubuntu1 [26.4 kB] Get:10 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x systemd-sysv s390x 252.1-1ubuntu1 [11.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x debconf all 1.5.80 [125 kB] Get:12 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libssl3 s390x 3.0.5-2ubuntu2 [1565 kB] Get:13 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libkmod2 s390x 30+20220905-1ubuntu1 [48.1 kB] Get:14 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcap2 s390x 1:2.63-1 [27.5 kB] Get:15 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x liblz4-1 s390x 1.9.4-1 [59.9 kB] Get:16 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x systemd s390x 252.1-1ubuntu1 [2853 kB] Get:17 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsystemd-shared s390x 252.1-1ubuntu1 [1655 kB] Get:18 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libsystemd0 s390x 252.1-1ubuntu1 [317 kB] Get:19 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libcc1-0 s390x 12.2.0-10ubuntu1 [45.5 kB] Get:20 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf-nobfd0 s390x 2.39.50.20221211-0ubuntu1 [94.3 kB] Get:21 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libctf0 s390x 2.39.50.20221211-0ubuntu1 [94.2 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libjansson4 s390x 2.14-2 [31.8 kB] Get:23 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-s390x-linux-gnu s390x 2.39.50.20221211-0ubuntu1 [2053 kB] Get:24 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libbinutils s390x 2.39.50.20221211-0ubuntu1 [460 kB] Get:25 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils-common s390x 2.39.50.20221211-0ubuntu1 [225 kB] Get:26 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x binutils s390x 2.39.50.20221211-0ubuntu1 [3102 B] Get:27 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgomp1 s390x 12.2.0-10ubuntu1 [122 kB] Get:28 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libitm1 s390x 12.2.0-10ubuntu1 [29.5 kB] Get:29 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libatomic1 s390x 12.2.0-10ubuntu1 [8942 B] Get:30 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libasan8 s390x 12.2.0-10ubuntu1 [2409 kB] Get:31 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libubsan1 s390x 12.2.0-10ubuntu1 [958 kB] Get:32 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gcc-12-base s390x 12.2.0-10ubuntu1 [19.6 kB] Get:33 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libstdc++6 s390x 12.2.0-10ubuntu1 [728 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x g++-12 s390x 12.2.0-10ubuntu1 [9436 kB] Get:35 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libstdc++-12-dev s390x 12.2.0-10ubuntu1 [2192 kB] Get:36 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgcc-12-dev s390x 12.2.0-10ubuntu1 [853 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x gcc-12 s390x 12.2.0-10ubuntu1 [16.2 MB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x cpp-12 s390x 12.2.0-10ubuntu1 [8165 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libgcc-s1 s390x 12.2.0-10ubuntu1 [28.4 kB] Get:40 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libudev1 s390x 252.1-1ubuntu1 [86.8 kB] Get:41 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x adduser all 3.129ubuntu1 [59.0 kB] Get:42 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x openssl s390x 3.0.5-2ubuntu2 [1164 kB] Get:43 http://ftpmaster.internal/ubuntu lunar/main s390x ca-certificates all 20211016ubuntu1 [141 kB] Get:44 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x dpkg-dev all 1.21.12ubuntu2 [1071 kB] Get:45 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libdpkg-perl all 1.21.12ubuntu2 [242 kB] Get:46 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x linux-libc-dev s390x 5.19.0-23.24 [1339 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 67.4 MB in 29s (2297 kB/s) (Reading database ... 13421 files and directories currently installed.) Preparing to unpack .../coreutils_9.1-1ubuntu1_s390x.deb ... Unpacking coreutils (9.1-1ubuntu1) over (8.32-4.1ubuntu1) ... Setting up coreutils (9.1-1ubuntu1) ... (Reading database ... 13421 files and directories currently installed.) Preparing to unpack .../dpkg_1.21.12ubuntu2_s390x.deb ... Unpacking dpkg (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Setting up dpkg (1.21.12ubuntu2) ... (Reading database ... 13421 files and directories currently installed.) Preparing to unpack .../dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1_s390x.deb ... Unpacking dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) over (0.5.11+git20210903+057cd650a4ed-8ubuntu1) ... Setting up dash (0.5.11+git20210903+057cd650a4ed-9ubuntu1) ... (Reading database ... 13421 files and directories currently installed.) Preparing to unpack .../perl_5.36.0-6_s390x.deb ... Unpacking perl (5.36.0-6) over (5.34.0-5ubuntu1) ... Selecting previously unselected package perl-modules-5.36. Preparing to unpack .../perl-modules-5.36_5.36.0-6_all.deb ... Unpacking perl-modules-5.36 (5.36.0-6) ... Selecting previously unselected package libperl5.36:s390x. Preparing to unpack .../libperl5.36_5.36.0-6_s390x.deb ... Unpacking libperl5.36:s390x (5.36.0-6) ... Preparing to unpack .../perl-base_5.36.0-6_s390x.deb ... Unpacking perl-base (5.36.0-6) over (5.34.0-5ubuntu1) ... Setting up perl-base (5.36.0-6) ... (Reading database ... 15345 files and directories currently installed.) Preparing to unpack .../zlib1g_1%3a1.2.13.dfsg-1ubuntu3_s390x.deb ... Unpacking zlib1g:s390x (1:1.2.13.dfsg-1ubuntu3) over (1:1.2.11.dfsg-4.1ubuntu1) ... Setting up zlib1g:s390x (1:1.2.13.dfsg-1ubuntu3) ... dpkg: lsb-base: dependency problems, but removing anyway as you requested: sysvinit-utils depends on lsb-base (>= 11.0.0~). procps depends on lsb-base (>= 3.0-10). (Reading database ... 15345 files and directories currently installed.) Removing lsb-base (11.2ubuntu1) ... (Reading database ... 15337 files and directories currently installed.) Preparing to unpack .../sysvinit-utils_3.05-7ubuntu1_s390x.deb ... Unpacking sysvinit-utils (3.05-7ubuntu1) over (3.04-1ubuntu1) ... Setting up sysvinit-utils (3.05-7ubuntu1) ... (Reading database ... 15340 files and directories currently installed.) Preparing to unpack .../systemd-sysv_252.1-1ubuntu1_s390x.deb ... Unpacking systemd-sysv (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../debconf_1.5.80_all.deb ... Unpacking debconf (1.5.80) over (1.5.79ubuntu1) ... Setting up debconf (1.5.80) ... (Reading database ... 15341 files and directories currently installed.) Preparing to unpack .../libssl3_3.0.5-2ubuntu2_s390x.deb ... Unpacking libssl3:s390x (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../libkmod2_30+20220905-1ubuntu1_s390x.deb ... Unpacking libkmod2:s390x (30+20220905-1ubuntu1) over (30+20220630-3ubuntu1) ... Preparing to unpack .../libcap2_1%3a2.63-1_s390x.deb ... Unpacking libcap2:s390x (1:2.63-1) over (1:2.44-1build3) ... Setting up libcap2:s390x (1:2.63-1) ... (Reading database ... 15343 files and directories currently installed.) Preparing to unpack .../liblz4-1_1.9.4-1_s390x.deb ... Unpacking liblz4-1:s390x (1.9.4-1) over (1.9.3-2build2) ... Setting up liblz4-1:s390x (1.9.4-1) ... Setting up libssl3:s390x (3.0.5-2ubuntu2) ... (Reading database ... 15343 files and directories currently installed.) Preparing to unpack .../systemd_252.1-1ubuntu1_s390x.deb ... Unpacking systemd (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd-shared_252.1-1ubuntu1_s390x.deb ... Unpacking libsystemd-shared:s390x (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Preparing to unpack .../libsystemd0_252.1-1ubuntu1_s390x.deb ... Unpacking libsystemd0:s390x (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libsystemd0:s390x (252.1-1ubuntu1) ... (Reading database ... 15355 files and directories currently installed.) 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Unpacking libubsan1:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../13-gcc-12-base_12.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-12-base:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Setting up gcc-12-base:s390x (12.2.0-10ubuntu1) ... (Reading database ... 15365 files and directories currently installed.) Preparing to unpack .../libstdc++6_12.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++6:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Setting up libstdc++6:s390x (12.2.0-10ubuntu1) ... (Reading database ... 15365 files and directories currently installed.) Preparing to unpack .../0-g++-12_12.2.0-10ubuntu1_s390x.deb ... Unpacking g++-12 (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../1-libstdc++-12-dev_12.2.0-10ubuntu1_s390x.deb ... Unpacking libstdc++-12-dev:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../2-libgcc-12-dev_12.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-12-dev:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../3-gcc-12_12.2.0-10ubuntu1_s390x.deb ... Unpacking gcc-12 (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../4-cpp-12_12.2.0-10ubuntu1_s390x.deb ... Unpacking cpp-12 (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Preparing to unpack .../5-libgcc-s1_12.2.0-10ubuntu1_s390x.deb ... Unpacking libgcc-s1:s390x (12.2.0-10ubuntu1) over (12.2.0-9ubuntu1) ... Setting up libgcc-s1:s390x (12.2.0-10ubuntu1) ... (Reading database ... 15365 files and directories currently installed.) Preparing to unpack .../libudev1_252.1-1ubuntu1_s390x.deb ... Unpacking libudev1:s390x (252.1-1ubuntu1) over (251.4-1ubuntu7) ... Setting up libudev1:s390x (252.1-1ubuntu1) ... (Reading database ... 15366 files and directories currently installed.) Preparing to unpack .../adduser_3.129ubuntu1_all.deb ... moving unchanged adduser.conf to adduser.conf.update-old. New dpkg-conffile will come from the package. Unpacking adduser (3.129ubuntu1) over (3.121ubuntu1) ... Setting up adduser (3.129ubuntu1) ... Installing new version of config file /etc/deluser.conf ... (Reading database ... 15333 files and directories currently installed.) Preparing to unpack .../openssl_3.0.5-2ubuntu2_s390x.deb ... Unpacking openssl (3.0.5-2ubuntu2) over (3.0.5-2ubuntu1) ... Preparing to unpack .../ca-certificates_20211016ubuntu1_all.deb ... Unpacking ca-certificates (20211016ubuntu1) over (20211016) ... Preparing to unpack .../dpkg-dev_1.21.12ubuntu2_all.deb ... Unpacking dpkg-dev (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Preparing to unpack .../libdpkg-perl_1.21.12ubuntu2_all.deb ... Unpacking libdpkg-perl (1.21.12ubuntu2) over (1.21.11ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.19.0-23.24_s390x.deb ... Unpacking linux-libc-dev:s390x (5.19.0-23.24) over (5.19.0-21.21) ... Setting up cpp-12 (12.2.0-10ubuntu1) ... Setting up binutils-common:s390x (2.39.50.20221211-0ubuntu1) ... Setting up linux-libc-dev:s390x (5.19.0-23.24) ... Setting up libctf-nobfd0:s390x (2.39.50.20221211-0ubuntu1) ... Setting up libgomp1:s390x (12.2.0-10ubuntu1) ... Setting up libjansson4:s390x (2.14-2) ... Setting up perl-modules-5.36 (5.36.0-6) ... Setting up libatomic1:s390x (12.2.0-10ubuntu1) ... Setting up libubsan1:s390x (12.2.0-10ubuntu1) ... Setting up libasan8:s390x (12.2.0-10ubuntu1) ... Setting up libbinutils:s390x (2.39.50.20221211-0ubuntu1) ... Setting up openssl (3.0.5-2ubuntu2) ... Setting up libcc1-0:s390x (12.2.0-10ubuntu1) ... Setting up libperl5.36:s390x (5.36.0-6) ... Setting up libitm1:s390x (12.2.0-10ubuntu1) ... Setting up libkmod2:s390x (30+20220905-1ubuntu1) ... Setting up libctf0:s390x (2.39.50.20221211-0ubuntu1) ... Setting up binutils-s390x-linux-gnu (2.39.50.20221211-0ubuntu1) ... Setting up binutils (2.39.50.20221211-0ubuntu1) ... Setting up ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... rehash: warning: skipping ca-certificates.crt,it does not contain exactly one certificate or CRL 0 added, 3 removed; done. Setting up perl (5.36.0-6) ... Setting up libgcc-12-dev:s390x (12.2.0-10ubuntu1) ... Setting up libsystemd-shared:s390x (252.1-1ubuntu1) ... Setting up libdpkg-perl (1.21.12ubuntu2) ... Setting up libstdc++-12-dev:s390x (12.2.0-10ubuntu1) ... Setting up systemd (252.1-1ubuntu1) ... Installing new version of config file /etc/systemd/logind.conf ... Installing new version of config file /etc/systemd/system.conf ... Installing new version of config file /etc/systemd/user.conf ... Initializing machine ID from random generator. Setting up dpkg-dev (1.21.12ubuntu2) ... Setting up gcc-12 (12.2.0-10ubuntu1) ... Setting up g++-12 (12.2.0-10ubuntu1) ... Setting up systemd-sysv (252.1-1ubuntu1) ... Processing triggers for debianutils (5.7-0.4) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... (Reading database ... 15330 files and directories currently installed.) Purging configuration files for lsb-base (11.2ubuntu1) ... Processing triggers for ca-certificates (20211016ubuntu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-24934577 s390x lunar-proposed -c chroot:build-PACKAGEBUILD-24934577 --arch=s390x --dist=lunar-proposed --nolog hmmer2_2.3.2+dfsg-8.dsc Initiating build PACKAGEBUILD-24934577 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 21:05:01 UTC 2022 s390x sbuild (Debian sbuild) 0.79.0 (05 February 2020) on bos01-s390x-005.buildd +==============================================================================+ | hmmer2 2.3.2+dfsg-8 (s390x) Tue, 13 Dec 2022 11:40:08 +0000 | +==============================================================================+ Package: hmmer2 Version: 2.3.2+dfsg-8 Source Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Machine Architecture: s390x Host Architecture: s390x Build Architecture: s390x Build Type: any I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-24934577/chroot-autobuild' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-uUThG5/resolver-emdNBt' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hmmer2_2.3.2+dfsg-8.dsc exists in .; copying to chroot I: NOTICE: Log filtering will replace 'build/hmmer2-uUThG5/hmmer2-2.3.2+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hmmer2-uUThG5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot Filtered Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename, build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [413 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1862 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.34 perl-modules-5.34 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename Suggested packages: autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff biosquid libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdextrautils debhelper debugedit dh-autoreconf dh-exec dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libdw1 libelf1 libfile-stripnondeterminism-perl libicu71 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libpkgconf3 libsquid-dev libsquid1 libsub-override-perl libtool libuchardet0 libxml2 m4 man-db pkg-config pkgconf pkgconf-bin po-debconf rename sbuild-build-depends-main-dummy 0 upgraded, 41 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB of archives. After this operation, 68.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [710 B] Get:2 http://ftpmaster.internal/ubuntu lunar/main s390x libelf1 s390x 0.188-1 [54.5 kB] Get:3 http://ftpmaster.internal/ubuntu lunar/main s390x libicu71 s390x 71.1-3ubuntu1 [10.5 MB] Get:4 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x libxml2 s390x 2.9.14+dfsg-1.1 [717 kB] Get:5 http://ftpmaster.internal/ubuntu lunar/main s390x bsdextrautils s390x 2.38.1-4ubuntu1 [71.3 kB] Get:6 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic-mgc s390x 1:5.41-4 [258 kB] Get:7 http://ftpmaster.internal/ubuntu lunar/main s390x libmagic1 s390x 1:5.41-4 [84.8 kB] Get:8 http://ftpmaster.internal/ubuntu lunar/main s390x file s390x 1:5.41-4 [21.4 kB] Get:9 http://ftpmaster.internal/ubuntu lunar/main s390x gettext-base s390x 0.21-10 [37.6 kB] Get:10 http://ftpmaster.internal/ubuntu lunar/main s390x libuchardet0 s390x 0.0.7-1build2 [76.4 kB] Get:11 http://ftpmaster.internal/ubuntu lunar/main s390x groff-base s390x 1.22.4-9 [914 kB] Get:12 http://ftpmaster.internal/ubuntu lunar/main s390x libpipeline1 s390x 1.5.7-1 [23.4 kB] Get:13 http://ftpmaster.internal/ubuntu lunar/main s390x man-db s390x 2.11.1-1 [1216 kB] Get:14 http://ftpmaster.internal/ubuntu lunar/main s390x m4 s390x 1.4.19-1 [243 kB] Get:15 http://ftpmaster.internal/ubuntu lunar/main s390x autoconf all 2.71-2 [338 kB] Get:16 http://ftpmaster.internal/ubuntu lunar/main s390x autotools-dev all 20220109.1 [44.9 kB] Get:17 http://ftpmaster.internal/ubuntu lunar/main s390x automake all 1:1.16.5-1.3 [558 kB] Get:18 http://ftpmaster.internal/ubuntu lunar/main s390x autopoint all 0.21-10 [421 kB] Get:19 http://ftpmaster.internal/ubuntu lunar/main s390x libdebhelper-perl all 13.10.1ubuntu1 [67.1 kB] Get:20 http://ftpmaster.internal/ubuntu lunar/main s390x libtool all 2.4.7-5 [166 kB] Get:21 http://ftpmaster.internal/ubuntu lunar/main s390x dh-autoreconf all 20 [16.1 kB] Get:22 http://ftpmaster.internal/ubuntu lunar/main s390x libarchive-zip-perl all 1.68-1 [90.2 kB] Get:23 http://ftpmaster.internal/ubuntu lunar/main s390x libsub-override-perl all 0.09-4 [8706 B] Get:24 http://ftpmaster.internal/ubuntu lunar/main s390x libfile-stripnondeterminism-perl all 1.13.0-2 [18.2 kB] Get:25 http://ftpmaster.internal/ubuntu lunar/main s390x dh-strip-nondeterminism all 1.13.0-2 [5308 B] Get:26 http://ftpmaster.internal/ubuntu lunar/main s390x libdw1 s390x 0.188-1 [245 kB] Get:27 http://ftpmaster.internal/ubuntu lunar/main s390x debugedit s390x 1:5.0-5 [47.5 kB] Get:28 http://ftpmaster.internal/ubuntu lunar/main s390x dwz s390x 0.14+20220924-2 [108 kB] Get:29 http://ftpmaster.internal/ubuntu lunar/main s390x gettext s390x 0.21-10 [851 kB] Get:30 http://ftpmaster.internal/ubuntu lunar/main s390x intltool-debian all 0.35.0+20060710.6 [23.2 kB] Get:31 http://ftpmaster.internal/ubuntu lunar/main s390x po-debconf all 1.0.21+nmu1 [233 kB] Get:32 http://ftpmaster.internal/ubuntu lunar/main s390x debhelper all 13.10.1ubuntu1 [924 kB] Get:33 http://ftpmaster.internal/ubuntu lunar/main s390x libperl4-corelibs-perl all 0.004-3 [37.9 kB] Get:34 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x libpkgconf3 s390x 1.8.0-11 [28.5 kB] Get:35 http://ftpmaster.internal/ubuntu lunar/universe s390x libsquid1 s390x 1.9g+cvs20050121-12 [78.5 kB] Get:36 http://ftpmaster.internal/ubuntu lunar/universe s390x libsquid-dev s390x 1.9g+cvs20050121-12 [151 kB] Get:37 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x pkgconf-bin s390x 1.8.0-11 [20.7 kB] Get:38 http://ftpmaster.internal/ubuntu lunar-proposed/universe s390x pkgconf s390x 1.8.0-11 [16.4 kB] Get:39 http://ftpmaster.internal/ubuntu lunar-proposed/main s390x pkg-config s390x 1.8.0-11 [5414 B] Get:40 http://ftpmaster.internal/ubuntu lunar/universe s390x rename all 1.31-1 [20.1 kB] Get:41 http://ftpmaster.internal/ubuntu lunar/main s390x dh-exec s390x 0.27 [25.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.8 MB in 2s (7675 kB/s) Selecting previously unselected package libelf1:s390x. (Reading database ... 15330 files and directories currently installed.) Preparing to unpack .../00-libelf1_0.188-1_s390x.deb ... Unpacking libelf1:s390x (0.188-1) ... Selecting previously unselected package libicu71:s390x. Preparing to unpack .../01-libicu71_71.1-3ubuntu1_s390x.deb ... Unpacking libicu71:s390x (71.1-3ubuntu1) ... Selecting previously unselected package libxml2:s390x. Preparing to unpack .../02-libxml2_2.9.14+dfsg-1.1_s390x.deb ... Unpacking libxml2:s390x (2.9.14+dfsg-1.1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../03-bsdextrautils_2.38.1-4ubuntu1_s390x.deb ... Unpacking bsdextrautils (2.38.1-4ubuntu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.41-4_s390x.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:s390x. Preparing to unpack .../05-libmagic1_1%3a5.41-4_s390x.deb ... Unpacking libmagic1:s390x (1:5.41-4) ... 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Selecting previously unselected package pkg-config:s390x. Preparing to unpack .../37-pkg-config_1.8.0-11_s390x.deb ... Unpacking pkg-config:s390x (1.8.0-11) ... Selecting previously unselected package rename. Preparing to unpack .../38-rename_1.31-1_all.deb ... Unpacking rename (1.31-1) ... Selecting previously unselected package dh-exec. Preparing to unpack .../39-dh-exec_0.27_s390x.deb ... Unpacking dh-exec (0.27) ... Selecting previously unselected package sbuild-build-depends-main-dummy. Preparing to unpack .../40-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ... Setting up libpipeline1:s390x (1.5.7-1) ... Setting up libicu71:s390x (71.1-3ubuntu1) ... Setting up bsdextrautils (2.38.1-4ubuntu1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.10.1ubuntu1) ... Setting up libperl4-corelibs-perl (0.004-3) ... Setting up libmagic1:s390x (1:5.41-4) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up rename (1.31-1) ... update-alternatives: using /usr/bin/file-rename to provide /usr/bin/rename (rename) in auto mode Setting up file (1:5.41-4) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:s390x (1.8.0-11) ... Setting up autopoint (0.21-10) ... Setting up pkgconf-bin (1.8.0-11) ... Setting up autoconf (2.71-2) ... Setting up libsquid1 (1.9g+cvs20050121-12) ... Setting up libuchardet0:s390x (0.0.7-1build2) ... Setting up libsub-override-perl (0.09-4) ... Setting up libelf1:s390x (0.188-1) ... Setting up libxml2:s390x (2.9.14+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up libdw1:s390x (0.188-1) ... Setting up gettext (0.21-10) ... Setting up libtool (2.4.7-5) ... Setting up libsquid-dev (1.9g+cvs20050121-12) ... Setting up pkgconf:s390x (1.8.0-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up pkg-config:s390x (1.8.0-11) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up debugedit (1:5.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up debhelper (13.10.1ubuntu1) ... Setting up dh-exec (0.27) ... Setting up sbuild-build-depends-main-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.36-0ubuntu4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 21:05:01 UTC 2022 s390x (s390x) Toolchain package versions: binutils_2.39.50.20221211-0ubuntu1 dpkg-dev_1.21.12ubuntu2 g++-12_12.2.0-10ubuntu1 gcc-12_12.2.0-10ubuntu1 libc6-dev_2.36-0ubuntu4 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 linux-libc-dev_5.19.0-23.24 Package versions: adduser_3.129ubuntu1 advancecomp_2.4-1 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3ubuntu1 base-passwd_3.6.1 bash_5.2-1ubuntu2 binutils_2.39.50.20221211-0ubuntu1 binutils-common_2.39.50.20221211-0ubuntu1 binutils-s390x-linux-gnu_2.39.50.20221211-0ubuntu1 bsdextrautils_2.38.1-4ubuntu1 bsdutils_1:2.38.1-4ubuntu1 build-essential_12.9ubuntu3 bzip2_1.0.8-5build1 ca-certificates_20211016ubuntu1 coreutils_9.1-1ubuntu1 cpp_4:12.2.0-1ubuntu1 cpp-12_12.2.0-10ubuntu1 dash_0.5.11+git20210903+057cd650a4ed-9ubuntu1 debconf_1.5.80 debhelper_13.10.1ubuntu1 debianutils_5.7-0.4 debugedit_1:5.0-5 dh-autoreconf_20 dh-exec_0.27 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.12ubuntu2 dpkg-dev_1.21.12ubuntu2 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1ubuntu1 fakeroot_1.30.1-1ubuntu1 file_1:5.41-4 findutils_4.9.0-3ubuntu1 g++_4:12.2.0-1ubuntu1 g++-12_12.2.0-10ubuntu1 gcc_4:12.2.0-1ubuntu1 gcc-12_12.2.0-10ubuntu1 gcc-12-base_12.2.0-10ubuntu1 gettext_0.21-10 gettext-base_0.21-10 gpg_2.2.40-1ubuntu1 gpg-agent_2.2.40-1ubuntu1 gpgconf_2.2.40-1ubuntu1 gpgv_2.2.40-1ubuntu1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1ubuntu1 hostname_3.23ubuntu2 init_1.65.2 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapparmor1_3.0.7-1ubuntu4 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan8_12.2.0-10ubuntu1 libassuan0_2.5.5-5 libatomic1_12.2.0-10ubuntu1 libattr1_1:2.5.1-3 libaudit-common_1:3.0.7-1ubuntu2 libaudit1_1:3.0.7-1ubuntu2 libbinutils_2.39.50.20221211-0ubuntu1 libblkid1_2.38.1-4ubuntu1 libbz2-1.0_1.0.8-5build1 libc-bin_2.36-0ubuntu4 libc-dev-bin_2.36-0ubuntu4 libc6_2.36-0ubuntu4 libc6-dev_2.36-0ubuntu4 libcap-ng0_0.8.3-1build1 libcap2_1:2.63-1 libcc1-0_12.2.0-10ubuntu1 libcom-err2_1.46.6~rc1-1ubuntu1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libcryptsetup12_2:2.5.0-6ubuntu3 libctf-nobfd0_2.39.50.20221211-0ubuntu1 libctf0_2.39.50.20221211-0ubuntu1 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264ubuntu1 libdebhelper-perl_13.10.1ubuntu1 libdevmapper1.02.1_2:1.02.185-1ubuntu1 libdpkg-perl_1.21.12ubuntu2 libdw1_0.188-1 libelf1_0.188-1 libext2fs2_1.46.6~rc1-1ubuntu1 libfakeroot_1.30.1-1ubuntu1 libfdisk1_2.38.1-4ubuntu1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.0-2 libgcc-12-dev_12.2.0-10ubuntu1 libgcc-s1_12.2.0-10ubuntu1 libgcrypt20_1.10.1-2ubuntu1 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1ubuntu1 libgnutls30_3.7.7-2ubuntu2 libgomp1_12.2.0-10ubuntu1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libicu71_71.1-3ubuntu1 libidn2-0_2.3.3-1build1 libip4tc2_1.8.7-1ubuntu7 libisl23_0.25-1 libitm1_12.2.0-10ubuntu1 libjansson4_2.14-2 libjson-c5_0.16-2 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkmod2_30+20220905-1ubuntu1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 liblockfile-bin_1.17-1build2 liblockfile1_1.17-1build2 liblz4-1_1.9.4-1 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4ubuntu1 libmpc3_1.2.1-2build1 libmpfr6_4.1.0-3build3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnpth0_1.6-3build2 libnsl-dev_1.3.0-2build2 libnsl2_1.3.0-2build2 libp11-kit0_0.24.1-1ubuntu2 libpam-modules_1.5.2-5ubuntu1 libpam-modules-bin_1.5.2-5ubuntu1 libpam-runtime_1.5.2-5ubuntu1 libpam0g_1.5.2-5ubuntu1 libpcre2-8-0_10.40-1ubuntu1 libpcre3_2:8.39-14 libperl4-corelibs-perl_0.004-3 libperl5.34_5.34.0-5ubuntu1 libperl5.36_5.36.0-6 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-11 libpng16-16_1.6.39-2 libprocps8_2:3.3.17-7ubuntu1 libreadline8_8.2-1.2 libseccomp2_2.5.4-1ubuntu2 libselinux1_3.4-1build1 libsemanage-common_3.4-1build1 libsemanage2_3.4-1build1 libsepol2_3.4-2 libsmartcols1_2.38.1-4ubuntu1 libsqlite3-0_3.40.0-1 libsquid-dev_1.9g+cvs20050121-12 libsquid1_1.9g+cvs20050121-12 libss2_1.46.6~rc1-1ubuntu1 libssl3_3.0.5-2ubuntu2 libstdc++-12-dev_12.2.0-10ubuntu1 libstdc++6_12.2.0-10ubuntu1 libsub-override-perl_0.09-4 libsystemd-shared_252.1-1ubuntu1 libsystemd0_252.1-1ubuntu1 libtasn1-6_4.19.0-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-10ubuntu1 libuchardet0_0.0.7-1build2 libudev1_252.1-1ubuntu1 libunistring2_1.0-2 libuuid1_2.38.1-4ubuntu1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.0-23.24 lockfile-progs_0.1.19build1 login_1:4.13+dfsg1-1ubuntu1 logsave_1.46.6~rc1-1ubuntu1 lto-disabled-list_36 m4_1.4.19-1 make_4.3-4.1build1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4ubuntu1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 openssl_3.0.5-2ubuntu2 optipng_0.7.7-2build1 passwd_1:4.13+dfsg1-1ubuntu1 patch_2.7.6-7build2 perl_5.36.0-6 perl-base_5.36.0-6 perl-modules-5.34_5.34.0-5ubuntu1 perl-modules-5.36_5.36.0-6 pinentry-curses_1.2.1-1ubuntu1 pkg-config_1.8.0-11 pkgbinarymangler_149 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 policyrcd-script-zg2_0.1-3.1 procps_2:3.3.17-7ubuntu1 readline-common_8.2-1.2 rename_1.31-1 rpcsvc-proto_1.4.2-0ubuntu6 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1ubuntu2 sensible-utils_0.0.17 systemd_252.1-1ubuntu1 systemd-sysv_252.1-1ubuntu1 sysvinit-utils_3.05-7ubuntu1 tar_1.34+dfsg-1.1 tzdata_2022g-0ubuntu2 ubuntu-keyring_2021.03.26 usrmerge_33ubuntu1 util-linux_2.38.1-4ubuntu1 util-linux-extra_2.38.1-4ubuntu1 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hmmer2 Binary: hmmer2, hmmer2-doc, libhmmer2-dev Architecture: any all Version: 2.3.2+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Laszlo Kajan Homepage: http://hmmer.janelia.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/hmmer2 Vcs-Git: https://salsa.debian.org/med-team/hmmer2.git Testsuite: autopkgtest Testsuite-Triggers: build-essential, libperl4-corelibs-perl, libsquid-dev, pkg-config Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, libsquid-dev, pkg-config, dh-exec, rename Package-List: hmmer2 deb science optional arch=any hmmer2-doc deb doc optional arch=all libhmmer2-dev deb libdevel optional arch=any Checksums-Sha1: 7467176def6174e90edd239558b6fcc2cb8033df 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 6d6d658fa934eb53c22780e16c7899171587dbcc 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Checksums-Sha256: f9cd50acc23743648cb7de020c249bce396c3d07e0afe7e5418620cffa07bb44 331828 hmmer2_2.3.2+dfsg.orig.tar.xz 9cfce31a7ad72d780abfd68ddef533c87ae4388dc9e9e7e9680630f25791ad0d 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz Files: 4f8c9fd7c7de00fb8cfab499931ee4ba 331828 hmmer2_2.3.2+dfsg.orig.tar.xz a223d42d33db0c92ee26caccbc9a706b 19968 hmmer2_2.3.2+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOV/24RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHVhBAAjOZcCVOpWRuw207+UT5tjOryAIKyVFCr 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dpkg-source: info: extracting hmmer2 in /<> dpkg-source: info: unpacking hmmer2_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-source: info: applying spelling.patch dpkg-source: info: applying use_debian_packaged_biosquid.patch dpkg-source: info: applying build_libhmmer.a_with-fPIC.patch dpkg-source: info: applying add-runstatedir-option.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-24934577 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-24934577 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-24934577 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- Command: dpkg-buildpackage -us -uc -mLaunchpad Build Daemon -B -rfakeroot dpkg-buildpackage: info: source package hmmer2 dpkg-buildpackage: info: source version 2.3.2+dfsg-8 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/<>' if [ -e configure_not_used ] ; then mv configure_not_used configure; fi rm -f configure.ac make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cp -a debian/missing-sources/configure.ac . mv configure configure_not_used dh_autoreconf configure.ac:111: warning: underquoted definition of CHECK_GNU_MAKE configure.ac:111: run info Automake 'Extending aclocal' configure.ac:111: or see https://www.gnu.org/software/automake/manual/automake.html#Extending-aclocal configure.ac:153: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:153: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... configure.ac:153: the top level configure.ac:479: warning: The macro `AC_LANG_C' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/c.m4:72: AC_LANG_C is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level configure.ac:479: warning: The macro `AC_TRY_LINK' is obsolete. configure.ac:479: You should run autoupdate. ./lib/autoconf/general.m4:2920: AC_TRY_LINK is expanded from... configure.ac:281: ACX_PTHREAD is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:1534: AC_ARG_ENABLE is expanded from... configure.ac:479: the top level make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-threads --enable-lfs # --enable-pvm ./configure --build=s390x-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-threads --enable-lfs configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking build system type... s390x-ibm-linux-gnu checking host system type... s390x-ibm-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... yes checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: WARNING: 'Makefile.in' seems to ignore the --datarootdir setting config.status: creating src/config.h # avoid duplicated definition of PACKAGE_NAME (basically conflicting with biosquid when used together) sed -i -e '/^#define PACKAGE_NAME /i #ifndef PACKAGE_NAME' \ -e '/^#define PACKAGE_NAME /a #endif' \ -e '/^#define PACKAGE_VERSION /i #ifndef PACKAGE_VERSION' \ -e '/^#define PACKAGE_VERSION /a #endif' \ -e '/^#define _LARGEFILE_SOURCE /i #ifndef _LARGEFILE_SOURCE' \ -e '/^#define _LARGEFILE_SOURCE /a #endif' \ -e '/^#define _LARGEFILE64_SOURCE /i #ifndef _LARGEFILE64_SOURCE' \ -e '/^#define _LARGEFILE64_SOURCE /a #endif' \ -e '/^#define VERSION /i #ifndef VERSION' \ -e '/^#define VERSION /a #endif' \ src/config.h make[1]: Leaving directory '/<>' dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make[2]: Entering directory '/<>/src' gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmalign.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c alphabet.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c core_algorithms.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c debug.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c display.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emit.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c emulation.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c fast_algorithms.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c histogram.c histogram.c: In function ‘ExtremeValueSetHistogram’: histogram.c:725:23: warning: implicit declaration of function ‘IncompleteGamma’ [-Wimplicit-function-declaration] 725 | h->chip = (float) IncompleteGamma((double)(nbins-1-ndegrees)/2., | ^~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmio.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c mathsupport.c mathsupport.c: In function ‘Logp_cvec’: mathsupport.c:229:15: warning: implicit declaration of function ‘Gammln’ [-Wimplicit-function-declaration] 229 | lnp += Gammln(alpha[x] + cvec[x]); | ^~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c masks.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c misc.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c modelmakers.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan7.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c plan9.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c postprob.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c prior.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c pvm.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c threads.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c tophits.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c trace.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmbuild.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmcalibrate.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmconvert.c hmmcalibrate.c: In function ‘workpool_start’: hmmcalibrate.c:646:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 646 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmemit.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmfetch.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmindex.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmpfam.c hmmpfam.c: In function ‘workpool_start’: hmmpfam.c:1032:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1032 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -c hmmsearch.c hmmsearch.c: In function ‘workpool_start’: hmmsearch.c:1021:3: warning: implicit declaration of function ‘pthread_setconcurrency’ [-Wimplicit-function-declaration] 1021 | pthread_setconcurrency(num_threads+1); | ^~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory '/<>/src' make[2]: Entering directory '/<>/testsuite' gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c alignalign_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c evd_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c masks_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c parsingviterbi_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c tophits_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c trace_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c viterbi_exercise.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H `pkg-config --cflags libsquid` -I../src -c weeviterbi_test.c gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o alignalign_test -L../src alignalign_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o evd_test -L../src evd_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o masks_test -L../src masks_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o parsingviterbi_test -L../src parsingviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o tophits_test -L../src tophits_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o trace_test -L../src trace_test.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o viterbi_exercise -L../src viterbi_exercise.o -lhmmer `pkg-config --libs libsquid` -lm gcc -g -O2 -ffile-prefix-map=/<>=. -fdebug-prefix-map=/<>=/usr/src/hmmer2-2.3.2+dfsg-8 -flto=auto -ffat-lto-objects -flto=auto -ffat-lto-objects -fstack-protector-strong -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -flto=auto -ffat-lto-objects -flto=auto -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -o weeviterbi_test -L../src weeviterbi_test.o -lhmmer `pkg-config --libs libsquid` -lm make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' dh_auto_test make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1 make[2]: Entering directory '/<>' (cd testsuite; make check) make[3]: Entering directory '/<>/testsuite' make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. Running test suite exercises. Warning: some tests may take several minutes to complete. ./sqc 2 exercises.sqc . ../src exercise 1 [ hmmalign] ... ok. exercise 2 [ hmmalign/h] ... ok. exercise 3 [ hmmalign/m] ... ok. exercise 4 [ hmmalign/o] ... ok. exercise 5 [ hmmalign/q] ... ok. exercise 6 [ hmmalign/informat] ... ok. exercise 7 [ hmmalign/selex] ... ok. exercise 8 [ hmmalign/a2m] ... ok. exercise 9 [ hmmalign/clustal] ... ok. exercise 10 [ hmmalign/msf] ... ok. exercise 11 [ hmmalign/phylip] ... ok. exercise 12 [ hmmalign/oneline] ... ok. exercise 13 [ hmmalign/withali] ... ok. exercise 14 [ hmmalign/mapali] ... ok. exercise 15 [ hmmbuild] ... ok. exercise 16 [ hmmbuild/h] ... ok. exercise 17 [ hmmbuild/F] ... ok. exercise 18 [ hmmbuild/n] ... ok. exercise 19 [ hmmbuild/o] ... ok. exercise 20 [ hmmbuild/A] ... ok. exercise 21 [ hmmbuild/f] ... ok. exercise 22 [ hmmbuild/g] ... ok. exercise 23 [ hmmbuild/s] ... ok. exercise 24 [ hmmbuild/fast] ... ok. exercise 25 [ hmmbuild/hand] ... ok. exercise 26 [ hmmbuild/null] ... ok. exercise 27 [ hmmbuild/pam] ... ok. exercise 28 [ hmmbuild/prior] ... ok. exercise 29 [ hmmbuild/wblosum] ... ok. exercise 30 [ hmmbuild/wgsc] ... ok. exercise 31 [ hmmbuild/wme] ... ok. exercise 32 [ hmmbuild/wpb] ... ok. exercise 33 [ hmmbuild/wvoronoi] ... ok. exercise 34 [ hmmbuild/wnone] ... ok. exercise 35 [ hmmbuild/noeff] ... ok. exercise 36 [ hmmbuild/pbswitch] ... ok. exercise 37 [ hmmbuild/amino] ... ok. exercise 38 [ hmmbuild/nucleic] ... ok. exercise 39 [ hmmbuild/archpri] ... ok. exercise 40 [ hmmbuild/binary] ... ok. exercise 41 [ hmmbuild/cfile] ... ok. exercise 42 [ hmmbuild/gapmax] ... ok. exercise 43 [ hmmbuild/idlevel] ... ok. exercise 44 [ hmmbuild/informat] ... ok. exercise 45 [ hmmbuild/pamwgt] ... ok. exercise 46 [ hmmbuild/swentry] ... ok. exercise 47 [ hmmbuild/swexit] ... ok. exercise 48 [ hmmbuild/verbose] ... ok. exercise 49 [ hmmcalibrate] ... ok. exercise 50 [ hmmcalibrate/h] ... ok. exercise 51 [ hmmcalibrate/fixed] ... ok. exercise 52 [ hmmcalibrate/mean] ... ok. exercise 53 [ hmmcalibrate/hist] ... ok. exercise 54 [ hmmcalibrate/num] ... ok. exercise 55 [ hmmcalibrate/sd] ... ok. exercise 56 [ hmmcalibrate/seed] ... ok. exercise 57 [ hmmconvert] ... ok. exercise 58 [ hmmconvert/h] ... ok. exercise 59 [ hmmconvert/F] ... ok. exercise 60 [ hmmconvert/a] ... ok. exercise 61 [ hmmconvert/A] ... ok. exercise 62 [ hmmconvert/b] ... ok. exercise 63 [ hmmconvert/p] ... ok. exercise 64 [ hmmconvert/P] ... ok. exercise 65 [ hmmemit] ... ok. exercise 66 [ hmmemit/a] ... ok. exercise 67 [ hmmemit/c] ... ok. exercise 68 [ hmmemit/h] ... ok. exercise 69 [ hmmemit/n] ... ok. exercise 70 [ hmmemit/o] ... ok. exercise 71 [ hmmemit/q] ... ok. exercise 72 [ hmmemit/seed] ... ok. exercise 73 [ hmmindex] ... ok. exercise 74 [ hmmindex/h] ... ok. exercise 75 [ hmmfetch] ... ok. exercise 76 [ hmmfetch/h] ... ok. exercise 77 [ hmmfetch/n] ... ok. exercise 78 [ hmmpfam] ... ok. exercise 79 [ hmmpfam/h] ... ok. exercise 80 [ hmmpfam/n] ... ok. exercise 81 [ hmmpfam/A] ... ok. exercise 82 [ hmmpfam/E] ... ok. exercise 83 [ hmmpfam/T] ... ok. exercise 84 [ hmmpfam/Z] ... ok. exercise 85 [ hmmpfam/acc] ... ok. exercise 86 [ hmmpfam/compat] ... ok. exercise 87 [ hmmpfam/cut_ga] ... ok. exercise 88 [ hmmpfam/cut_nc] ... ok. exercise 89 [ hmmpfam/cut_tc] ... ok. exercise 90 [ hmmpfam/domE] ... ok. exercise 91 [ hmmpfam/domT] ... ok. exercise 92 [ hmmpfam/forward] ... ok. exercise 93 [ hmmpfam/informat] ... ok. exercise 94 [ hmmpfam/null2] ... ok. exercise 95 [ hmmpfam/xnu] ... ok. exercise 96 [ hmmsearch] ... ok. exercise 97 [ hmmsearch/h] ... ok. exercise 98 [ hmmsearch/A] ... ok. exercise 99 [ hmmsearch/E] ... ok. exercise 100 [ hmmsearch/T] ... ok. exercise 101 [ hmmsearch/Z] ... ok. exercise 102 [ hmmsearch/compat] ... ok. exercise 103 [ hmmsearch/cut_ga] ... ok. exercise 104 [ hmmsearch/cut_nc] ... ok. exercise 105 [ hmmsearch/cut_tc] ... ok. exercise 106 [ hmmsearch/domE] ... ok. exercise 107 [ hmmsearch/domT] ... ok. exercise 108 [ hmmsearch/forward] ... ok. exercise 109 [ hmmsearch/informat] ... ok. exercise 110 [ hmmsearch/null2] ... ok. exercise 111 [ hmmsearch/xnu] ... ok. exercise 112 [ align_align] ... ok. exercise 113 [ evd] ... ok. exercise 114 [ masks] ... ok. exercise 115 [ parsingv] ... ok. exercise 116 [ tophits] ... ok. exercise 117 [ trace] ... ok. exercise 118 [ viterbi] ... ok. exercise 119 [ weeviterbi] ... ok. exercise 120 [ test1/conversion] ... ok. All 120 exercises at level <= 2 passed. System information: Tue Dec 13 11:40:37 UTC 2022 Linux bos01-s390x-005 5.4.0-135-generic #152-Ubuntu SMP Wed Nov 23 21:05:01 UTC 2022 s390x s390x s390x GNU/Linux make[3]: Leaving directory '/<>/testsuite' make[2]: Leaving directory '/<>' rm -f testsuite/*.ssi cd testsuite && make clean make[2]: Entering directory '/<>/testsuite' rm -f *.o *~ Makefile.bak core alignalign_test evd_test masks_test parsingviterbi_test tophits_test trace_test viterbi_exercise weeviterbi_test TAGS gmon.out make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- prefix=/<>/debian/tmp make -j4 install DESTDIR=/<>/hmmer2-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/<>/hmmer2-2.3.2\+dfsg/debian/tmp make[2]: Entering directory '/<>' mkdir -p /<>/debian/tmp/bin mkdir -p /<>/debian/tmp/share/man/man1 for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch ; do\ cp src/$file /<>/debian/tmp/bin/;\ done for file in hmmer hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch; do\ cp documentation/man/$file.man /<>/debian/tmp/share/man/man1/$file.1;\ done make[2]: Leaving directory '/<>' # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1: rename 's/^hmm/hmm2/;' /<>/debian/tmp/bin/* cd /<>/debian/tmp/bin; rename 's/^hmm/hmm2/;' * cd /<>/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * mv /<>/debian/tmp/share/man/man1/hmm2er.1 /<>/debian/tmp/share/man/man1/hmmer2.1 # lkajan: resolve man page hypen issue: sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' /<>/debian/tmp/share/man/man1/* make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs -k NOTES make[1]: Leaving directory '/<>' debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/hmmer2/usr/share/doc/hmmer2/examples; sed -i "s#hmm#hmm2#g" testsuite/exercises.sqc cp -a testsuite/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/; mkdir /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; cp -a tutorial/* /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/tutorial; sed -i "s#../tut#./tut#g" /<>/debian/hmmer2/usr/share/doc/hmmer2/examples/exercises.sqc find /<>/debian/hmmer2/usr/share/doc/hmmer2/examples -name 'Makefile' | xargs sed -i "s^/<>^.^g" make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a debugedit: debian/hmmer2/usr/bin/hmm2calibrate: Unknown DWARF DW_FORM_0x1f20 d8a78d5b25f34c2d73da623dada74985810e6b75 debugedit: debian/hmmer2/usr/bin/hmm2fetch: Unknown DWARF DW_FORM_0x1f20 296a3a74ffc5699d2cc7c7ba600d0a21082ffa75 debugedit: debian/hmmer2/usr/bin/hmm2build: Unknown DWARF DW_FORM_0x1f20 8eacf38fe6f6bc0d7de49d2e44474cf61c388d6c debugedit: debian/hmmer2/usr/bin/hmm2pfam: Unknown DWARF DW_FORM_0x1f20 971abd08bc4a91523a7a022c8554b585c61aa4de debugedit: debian/hmmer2/usr/bin/hmm2index: Unknown DWARF DW_FORM_0x1f20 8f0d3b68bda9b2bbe9d1ea2f8df64c9c81a9983a debugedit: debian/hmmer2/usr/bin/hmm2search: Unknown DWARF DW_FORM_0x1f20 4b3f080f0310c30a904acb05052121199fbe2170 debugedit: debian/hmmer2/usr/bin/hmm2align: Unknown DWARF DW_FORM_0x1f20 fd60b81ee54533a62d3813c75739e01f4297c164 debugedit: debian/hmmer2/usr/bin/hmm2emit: Unknown DWARF DW_FORM_0x1f20 8ad3bc32f89cd38c4608ac8913d5a3668984b171 debugedit: debian/hmmer2/usr/bin/hmm2convert: Unknown DWARF DW_FORM_0x1f20 420c756014830747feb61ac76331bce1334106c7 dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libhmmer2-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 INFO: pkgstriptranslations version 149 pkgstriptranslations: processing hmmer2 (in debian/hmmer2); do_strip: , oemstrip: pkgstriptranslations: processing libhmmer2-dev (in debian/libhmmer2-dev); do_strip: , oemstrip: pkgstriptranslations: processing hmmer2-dbgsym (in debian/.debhelper/hmmer2/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/libhmmer2-dev/DEBIAN/control, package libhmmer2-dev, directory debian/libhmmer2-dev .. removing usr/share/doc/libhmmer2-dev/changelog.gz INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... pkgstripfiles: processing control file: debian/.debhelper/hmmer2/dbgsym-root/DEBIAN/control, package hmmer2-dbgsym, directory debian/.debhelper/hmmer2/dbgsym-root dpkg-deb: building package 'hmmer2-dbgsym' in 'debian/.debhelper/scratch-space/build-hmmer2/hmmer2-dbgsym_2.3.2+dfsg-8_s390x.deb'. Renaming hmmer2-dbgsym_2.3.2+dfsg-8_s390x.deb to hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... INFO: pkgstripfiles: waiting for lock (libhmmer2-dev) ... pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hmmer2/DEBIAN/control, package hmmer2, directory debian/hmmer2 .. removing usr/share/doc/hmmer2/changelog.gz pkgstripfiles: Running PNG optimization (using 4 cpus) for package hmmer2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hmmer2' in '../hmmer2_2.3.2+dfsg-8_s390x.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package libhmmer2-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhmmer2-dev' in '../libhmmer2-dev_2.3.2+dfsg-8_s390x.deb'. dpkg-genbuildinfo --build=any -O../hmmer2_2.3.2+dfsg-8_s390x.buildinfo dpkg-genchanges --build=any -mLaunchpad Build Daemon -O../hmmer2_2.3.2+dfsg-8_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-13T11:40:46Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_s390x.changes: ---------------------------------- Format: 1.8 Date: Sun, 11 Dec 2022 16:58:23 +0100 Source: hmmer2 Binary: hmmer2 libhmmer2-dev Built-For-Profiles: noudeb Architecture: s390x Version: 2.3.2+dfsg-8 Distribution: lunar-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hmmer2 - profile hidden Markov models for protein sequence analysis libhmmer2-dev - profile hidden Markov models for protein sequence analysis (devel Closes: 1025739 Changes: hmmer2 (2.3.2+dfsg-8) unstable; urgency=medium . * Provide configure.ac as source for configure Closes: #1025739 * Fix watchfile to detect new versions on github * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 1b14bf3020334877d9bc7d9aafd66385f2e5849b 566440 hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb dd29e8f960cbf5ffc50dc9e0d160b22a0cefeafc 6144 hmmer2_2.3.2+dfsg-8_s390x.buildinfo 24969b9309b8d3f194bb3b91aa03bf90daa420fc 306996 hmmer2_2.3.2+dfsg-8_s390x.deb b42513fbeb643f7a27cdf0818542b622e3e9a6aa 101976 libhmmer2-dev_2.3.2+dfsg-8_s390x.deb Checksums-Sha256: 4c65c4fa36a636338f74be0f7b3c6286e05e1cdaf97c208b89e77cd70165bf99 566440 hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb 0173ec35558adeefd5c48256409204e7a6f52e34d0e7dd89c6e5598e22afc463 6144 hmmer2_2.3.2+dfsg-8_s390x.buildinfo 1137e105d3f410a973a9b9034809c1211836f3412491ef90ead4585933b3f51d 306996 hmmer2_2.3.2+dfsg-8_s390x.deb af2fe8b5f1f1035f58b91640f8ef53895b36ffc4532b688e2ba01d1fb45a4fb6 101976 libhmmer2-dev_2.3.2+dfsg-8_s390x.deb Files: 74fbb1cb7f0fdc4f3f1fd5adf6ef6741 566440 debug optional hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb 0c8c977a6aa835aeab2ccd9344de605f 6144 science optional hmmer2_2.3.2+dfsg-8_s390x.buildinfo 755bd22cbe9637a29e084ca6e5d428ad 306996 science optional hmmer2_2.3.2+dfsg-8_s390x.deb 8af54a7fed2037e19d114fe1544153bf 101976 libdevel optional libhmmer2-dev_2.3.2+dfsg-8_s390x.deb /<>/hmmer2_2.3.2+dfsg-8_s390x.changes.new could not be renamed to /<>/hmmer2_2.3.2+dfsg-8_s390x.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: hmmer2 Binary: hmmer2 hmmer2-dbgsym libhmmer2-dev Architecture: s390x Version: 2.3.2+dfsg-8 Checksums-Md5: 74fbb1cb7f0fdc4f3f1fd5adf6ef6741 566440 hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb 755bd22cbe9637a29e084ca6e5d428ad 306996 hmmer2_2.3.2+dfsg-8_s390x.deb 8af54a7fed2037e19d114fe1544153bf 101976 libhmmer2-dev_2.3.2+dfsg-8_s390x.deb Checksums-Sha1: 1b14bf3020334877d9bc7d9aafd66385f2e5849b 566440 hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb 24969b9309b8d3f194bb3b91aa03bf90daa420fc 306996 hmmer2_2.3.2+dfsg-8_s390x.deb b42513fbeb643f7a27cdf0818542b622e3e9a6aa 101976 libhmmer2-dev_2.3.2+dfsg-8_s390x.deb Checksums-Sha256: 4c65c4fa36a636338f74be0f7b3c6286e05e1cdaf97c208b89e77cd70165bf99 566440 hmmer2-dbgsym_2.3.2+dfsg-8_s390x.ddeb 1137e105d3f410a973a9b9034809c1211836f3412491ef90ead4585933b3f51d 306996 hmmer2_2.3.2+dfsg-8_s390x.deb af2fe8b5f1f1035f58b91640f8ef53895b36ffc4532b688e2ba01d1fb45a4fb6 101976 libhmmer2-dev_2.3.2+dfsg-8_s390x.deb Build-Origin: Ubuntu Build-Architecture: s390x Build-Date: Tue, 13 Dec 2022 11:40:45 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs usr-local-has-programs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3ubuntu1), base-passwd (= 3.6.1), bash (= 5.2-1ubuntu2), binutils (= 2.39.50.20221211-0ubuntu1), binutils-common (= 2.39.50.20221211-0ubuntu1), binutils-s390x-linux-gnu (= 2.39.50.20221211-0ubuntu1), bsdextrautils (= 2.38.1-4ubuntu1), bsdutils (= 1:2.38.1-4ubuntu1), build-essential (= 12.9ubuntu3), bzip2 (= 1.0.8-5build1), coreutils (= 9.1-1ubuntu1), cpp (= 4:12.2.0-1ubuntu1), cpp-12 (= 12.2.0-10ubuntu1), dash (= 0.5.11+git20210903+057cd650a4ed-9ubuntu1), debconf (= 1.5.80), debhelper (= 13.10.1ubuntu1), debianutils (= 5.7-0.4), debugedit (= 1:5.0-5), dh-autoreconf (= 20), dh-exec (= 0.27), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-1), dpkg (= 1.21.12ubuntu2), dpkg-dev (= 1.21.12ubuntu2), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3ubuntu1), g++ (= 4:12.2.0-1ubuntu1), g++-12 (= 12.2.0-10ubuntu1), gcc (= 4:12.2.0-1ubuntu1), gcc-12 (= 12.2.0-10ubuntu1), gcc-12-base (= 12.2.0-10ubuntu1), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1ubuntu1), hostname (= 3.23ubuntu2), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-10ubuntu1), libatomic1 (= 12.2.0-10ubuntu1), libattr1 (= 1:2.5.1-3), libaudit-common (= 1:3.0.7-1ubuntu2), libaudit1 (= 1:3.0.7-1ubuntu2), libbinutils (= 2.39.50.20221211-0ubuntu1), libblkid1 (= 2.38.1-4ubuntu1), libbz2-1.0 (= 1.0.8-5build1), libc-bin (= 2.36-0ubuntu4), libc-dev-bin (= 2.36-0ubuntu4), libc6 (= 2.36-0ubuntu4), libc6-dev (= 2.36-0ubuntu4), libcap-ng0 (= 0.8.3-1build1), libcap2 (= 1:2.63-1), libcc1-0 (= 12.2.0-10ubuntu1), libcom-err2 (= 1.46.6~rc1-1ubuntu1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39.50.20221211-0ubuntu1), libctf0 (= 2.39.50.20221211-0ubuntu1), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264ubuntu1), libdebhelper-perl (= 13.10.1ubuntu1), libdpkg-perl (= 1.21.12ubuntu2), libdw1 (= 0.188-1), libelf1 (= 0.188-1), libfile-stripnondeterminism-perl (= 1.13.0-2), libgcc-12-dev (= 12.2.0-10ubuntu1), libgcc-s1 (= 12.2.0-10ubuntu1), libgcrypt20 (= 1.10.1-2ubuntu1), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1ubuntu1), libgomp1 (= 12.2.0-10ubuntu1), libgpg-error0 (= 1.46-1), libgssapi-krb5-2 (= 1.20.1-1), libicu71 (= 71.1-3ubuntu1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-10ubuntu1), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.9-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4ubuntu1), libmpc3 (= 1.2.1-2build1), libmpfr6 (= 4.1.0-3build3), libnsl-dev (= 1.3.0-2build2), libnsl2 (= 1.3.0-2build2), libpam-modules (= 1.5.2-5ubuntu1), libpam-modules-bin (= 1.5.2-5ubuntu1), libpam-runtime (= 1.5.2-5ubuntu1), libpam0g (= 1.5.2-5ubuntu1), libpcre2-8-0 (= 10.40-1ubuntu1), libperl4-corelibs-perl (= 0.004-3), libperl5.36 (= 5.36.0-6), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.0-11), libseccomp2 (= 2.5.4-1ubuntu2), libselinux1 (= 3.4-1build1), libsmartcols1 (= 2.38.1-4ubuntu1), libsquid-dev (= 1.9g+cvs20050121-12), libsquid1 (= 1.9g+cvs20050121-12), libssl3 (= 3.0.5-2ubuntu2), libstdc++-12-dev (= 12.2.0-10ubuntu1), libstdc++6 (= 12.2.0-10ubuntu1), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.1-1ubuntu1), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libubsan1 (= 12.2.0-10ubuntu1), libuchardet0 (= 0.0.7-1build2), libudev1 (= 252.1-1ubuntu1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4ubuntu1), libxml2 (= 2.9.14+dfsg-1.1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.0-23.24), login (= 1:4.13+dfsg1-1ubuntu1), lto-disabled-list (= 36), m4 (= 1.4.19-1), make (= 4.3-4.1build1), man-db (= 2.11.1-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7build2), perl (= 5.36.0-6), perl-base (= 5.36.0-6), perl-modules-5.36 (= 5.36.0-6), pkg-config (= 1.8.0-11), pkgconf (= 1.8.0-11), pkgconf-bin (= 1.8.0-11), po-debconf (= 1.0.21+nmu1), rename (= 1.31-1), rpcsvc-proto (= 1.4.2-0ubuntu6), sed (= 4.8-1ubuntu2), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7ubuntu1), tar (= 1.34+dfsg-1.1), usrmerge (= 33ubuntu1), util-linux (= 2.38.1-4ubuntu1), util-linux-extra (= 2.38.1-4ubuntu1), xz-utils (= 5.2.9-0.0), zlib1g (= 1:1.2.13.dfsg-1ubuntu3) Environment: DEB_BUILD_OPTIONS="parallel=4" DEB_BUILD_PROFILES="noudeb" LANG="C.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1670774303" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hmmer2_2.3.2+dfsg-8_s390x.deb ----------------------------- new Debian package, version 2.0. size 306996 bytes: control archive=2529 bytes. 922 bytes, 21 lines control 5093 bytes, 69 lines md5sums Package: hmmer2 Version: 2.3.2+dfsg-8 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 1246 Depends: libc6 (>= 2.34), libsquid1 (>= 1.9g+cvs20050121) Recommends: biosquid Suggests: hmmer2-doc (>= 2.3.2+dfsg-8) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/bin/ -rwxr-xr-x root/root 80832 2022-12-11 15:58 ./usr/bin/hmm2align -rwxr-xr-x root/root 78840 2022-12-11 15:58 ./usr/bin/hmm2build -rwxr-xr-x root/root 76648 2022-12-11 15:58 ./usr/bin/hmm2calibrate -rwxr-xr-x root/root 56032 2022-12-11 15:58 ./usr/bin/hmm2convert -rwxr-xr-x root/root 60048 2022-12-11 15:58 ./usr/bin/hmm2emit -rwxr-xr-x root/root 43376 2022-12-11 15:58 ./usr/bin/hmm2fetch -rwxr-xr-x root/root 43288 2022-12-11 15:58 ./usr/bin/hmm2index -rwxr-xr-x root/root 93920 2022-12-11 15:58 ./usr/bin/hmm2pfam -rwxr-xr-x root/root 97816 2022-12-11 15:58 ./usr/bin/hmm2search drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmindex -> ../../bin/hmm2index lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/lib/hmmer2/hmmpfam -> ../../bin/hmm2pfam drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/ -rw-r--r-- root/root 2293 2022-12-11 15:58 ./usr/share/doc/hmmer2/00README -rw-r--r-- root/root 344 2022-12-11 15:58 ./usr/share/doc/hmmer2/NEWS.Debian.gz lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/NOTES.gz -> changelog.gz -rw-r--r-- root/root 615 2022-12-11 15:58 ./usr/share/doc/hmmer2/README.Debian -rw-r--r-- root/root 578 2022-12-11 15:58 ./usr/share/doc/hmmer2/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/hmmer2/copyright drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/ -rw-r--r-- root/root 1972 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/Makefile -rw-r--r-- root/root 1725 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/Makefile.in -rw-r--r-- root/root 392 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.fa -rw-r--r-- root/root 126 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nfa -rw-r--r-- root/root 168 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.nslx -rw-r--r-- root/root 2122 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pam -rw-r--r-- root/root 2816 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.pri -rw-r--r-- root/root 297 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.slx -rw-r--r-- root/root 3271 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/Optiontests.sto -rw-r--r-- root/root 2684 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/README -rw-r--r-- root/root 7729 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/alignalign_test.c -rw-r--r-- root/root 9913 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/evd_test.c -rw-r--r-- root/root 592 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/exercises-pvm.sqc -rw-r--r-- root/root 548 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/exercises-threaded.sqc -rw-r--r-- root/root 10522 2022-12-11 15:58 ./usr/share/doc/hmmer2/examples/exercises.sqc -rw-r--r-- root/root 1611 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fitting_test.c -rw-r--r-- root/root 16930 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3-bin -rw-r--r-- root/root 16930 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3-bin-swap -rw-r--r-- root/root 31906 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.hmm -rw-r--r-- root/root 20514 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/fn3.seed -rw-r--r-- root/root 3926 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/masks_test.c -rw-r--r-- root/root 5491 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/parsingviterbi_test.c -rwxr-xr-x root/root 17674 2003-10-04 19:01 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./usr/share/doc/hmmer2/examples/weeviterbi_test.c -rw-r--r-- root/root 27073 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.hmm -rw-r--r-- root/root 535 2003-10-04 19:01 ./usr/share/doc/hmmer2/examples/weeviterbi_test.seq drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/man/man1/ -rw-r--r-- root/root 1748 2022-12-11 15:58 ./usr/share/man/man1/hmm2align.1.gz -rw-r--r-- root/root 4765 2022-12-11 15:58 ./usr/share/man/man1/hmm2build.1.gz -rw-r--r-- root/root 1703 2022-12-11 15:58 ./usr/share/man/man1/hmm2calibrate.1.gz -rw-r--r-- root/root 1113 2022-12-11 15:58 ./usr/share/man/man1/hmm2convert.1.gz -rw-r--r-- root/root 1364 2022-12-11 15:58 ./usr/share/man/man1/hmm2emit.1.gz -rw-r--r-- root/root 945 2022-12-11 15:58 ./usr/share/man/man1/hmm2fetch.1.gz -rw-r--r-- root/root 752 2022-12-11 15:58 ./usr/share/man/man1/hmm2index.1.gz -rw-r--r-- root/root 3395 2022-12-11 15:58 ./usr/share/man/man1/hmm2pfam.1.gz -rw-r--r-- root/root 3046 2022-12-11 15:58 ./usr/share/man/man1/hmm2search.1.gz -rw-r--r-- root/root 1691 2022-12-11 15:58 ./usr/share/man/man1/hmmer2.1.gz libhmmer2-dev_2.3.2+dfsg-8_s390x.deb ------------------------------------ new Debian package, version 2.0. size 101976 bytes: control archive=994 bytes. 953 bytes, 23 lines control 617 bytes, 9 lines md5sums Package: libhmmer2-dev Source: hmmer2 Version: 2.3.2+dfsg-8 Architecture: s390x Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 353 Section: libdevel Priority: optional Multi-Arch: same Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis (devel) HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains header files and static library that can be used to link against libhmmer. drwxr-xr-x root/root 0 2022-12-11 15:58 ./ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/include/hmmer2/ -rw-r--r-- root/root 4524 2022-12-11 15:58 ./usr/include/hmmer2/config.h -rw-r--r-- root/root 16093 2022-12-11 15:58 ./usr/include/hmmer2/funcs.h -rw-r--r-- root/root 1201 2003-10-04 19:01 ./usr/include/hmmer2/globals.h -rw-r--r-- root/root 1733 2003-10-04 19:01 ./usr/include/hmmer2/postprob.h -rw-r--r-- root/root 24821 2003-10-04 19:01 ./usr/include/hmmer2/structs.h drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 290024 2022-12-11 15:58 ./usr/lib/s390x-linux-gnu/libhmmer.a drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 262 2022-12-11 15:58 ./usr/lib/s390x-linux-gnu/pkgconfig/libhmmer2.pc drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/ lrwxrwxrwx root/root 0 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/NOTES.gz -> changelog.gz -rw-r--r-- root/root 582 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/changelog.Debian.gz -rw-r--r-- root/root 1411 2022-12-11 15:58 ./usr/share/doc/libhmmer2-dev/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: s390x Build Type: any Build-Space: 18364 Build-Time: 31 Distribution: lunar-proposed Host Architecture: s390x Install-Time: 7 Job: hmmer2_2.3.2+dfsg-8.dsc Machine Architecture: s390x Package: hmmer2 Package-Time: 38 Source-Version: 2.3.2+dfsg-8 Space: 18364 Status: successful Version: 2.3.2+dfsg-8 -------------------------------------------------------------------------------- Finished at 2022-12-13T11:40:46Z Build needed 00:00:38, 18364k disk space Adding user buildd to group lxd RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=lunar --arch=s390x PACKAGEBUILD-24934577 Scanning for processes to kill in build PACKAGEBUILD-24934577