RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux beebe 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Buildd toolchain package versions: launchpad-buildd_121~0.IS.08.04.0 python-lpbuildd_121~0.IS.08.04.0 dpkg-dev_1.17.5ubuntu2. Syncing the system clock with the buildd NTP service... 16 Feb 16:27:25 ntpdate[618]: step time server 10.211.37.1 offset -0.855419 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-5594587', '/home/buildd/filecache-default/ca2901f9e2d4a61999fc5545ea43a99c8419de1b'] Unpacking chroot for build PACKAGEBUILD-5594587 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-5594587'] Mounting chroot for build PACKAGEBUILD-5594587 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-5594587', 'deb http://ftpmaster.internal/ubuntu trusty main universe', 'deb http://ftpmaster.internal/ubuntu trusty-security main universe', 'deb http://ftpmaster.internal/ubuntu trusty-updates main universe', 'deb http://ftpmaster.internal/ubuntu trusty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-5594587 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-5594587', 'arm64'] Updating debian chroot for build PACKAGEBUILD-5594587 Ign http://ftpmaster.internal trusty InRelease Ign http://archive-team.internal trusty InRelease Ign http://ftpmaster.internal trusty-security InRelease Ign http://archive-team.internal trusty Release.gpg Ign http://ftpmaster.internal trusty-updates InRelease Get:1 http://archive-team.internal trusty Release [730 B] Ign http://ftpmaster.internal trusty-proposed InRelease Ign http://archive-team.internal trusty/main arm64 Packages/DiffIndex Get:2 http://ftpmaster.internal trusty Release.gpg [933 B] Get:3 http://ftpmaster.internal trusty-security Release.gpg [933 B] Get:4 http://ftpmaster.internal trusty-updates Release.gpg [933 B] Get:5 http://ftpmaster.internal trusty-proposed Release.gpg [933 B] Get:6 http://ftpmaster.internal trusty Release [58.5 kB] Get:7 http://ftpmaster.internal trusty-security Release [58.5 kB] Ign http://archive-team.internal trusty/main Translation-en Get:8 http://archive-team.internal trusty/main arm64 Packages Get:9 http://ftpmaster.internal trusty-updates Release [58.5 kB] Get:10 http://ftpmaster.internal trusty-proposed Release [58.5 kB] Get:11 http://ftpmaster.internal trusty/main arm64 Packages [1224 kB] Get:12 http://ftpmaster.internal trusty/universe arm64 Packages [5133 kB] Get:13 http://ftpmaster.internal trusty/main Translation-en [760 kB] Get:14 http://ftpmaster.internal trusty/universe Translation-en [4056 kB] Get:15 http://ftpmaster.internal trusty-security/main arm64 Packages [14 B] Get:16 http://ftpmaster.internal trusty-security/universe arm64 Packages [14 B] Get:17 http://ftpmaster.internal trusty-security/main Translation-en [14 B] Get:18 http://ftpmaster.internal trusty-security/universe Translation-en [14 B] Get:19 http://ftpmaster.internal trusty-updates/main arm64 Packages [14 B] Get:20 http://ftpmaster.internal trusty-updates/universe arm64 Packages [14 B] Get:21 http://ftpmaster.internal trusty-updates/main Translation-en [14 B] Get:22 http://ftpmaster.internal trusty-updates/universe Translation-en [14 B] Get:23 http://ftpmaster.internal trusty-proposed/main arm64 Packages [12.9 kB] Get:24 http://ftpmaster.internal trusty-proposed/universe arm64 Packages [62.0 kB] Get:25 http://ftpmaster.internal trusty-proposed/main Translation-en [14.8 kB] Get:26 http://ftpmaster.internal trusty-proposed/universe Translation-en [60.0 kB] Fetched 11.6 MB in 13s (838 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following NEW packages will be installed: gcc-4.9-base libdebconfclient0 libprocps3 The following packages will be upgraded: apt apt-transport-https base-files base-passwd binutils bsdutils cpp cpp-4.8 dpkg dpkg-dev e2fslibs e2fsprogs findutils g++ g++-4.8 gcc gcc-4.8 gcc-4.8-base gnupg gpgv grep gzip ifupdown libapt-pkg4.12 libatomic1 libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcomerr2 libcurl3-gnutls libdbus-1-3 libdpkg-perl libdrm2 libffi6 libgcc-4.8-dev libgcc1 libgmp10 libgomp1 libgssapi-krb5-2 libisl10 libk5crypto3 libkrb5-3 libkrb5support0 liblzma5 libmount1 libncurses5 libncursesw5 libnih-dbus1 libnih1 libpam-modules libpam-modules-bin libpam-runtime libpam0g libplymouth2 libpng12-0 libselinux1 libsqlite3-0 libss2 libstdc++-4.8-dev libstdc++6 libtinfo5 libudev1 libuuid1 linux-libc-dev locales login mount multiarch-support ncurses-base ncurses-bin passwd perl perl-base perl-modules pkg-create-dbgsym pkgbinarymangler plymouth procps sed tar udev upstart util-linux xz-utils 86 upgraded, 3 newly installed, 0 to remove and 0 not upgraded. Need to get 44.1 MB of archives. After this operation, 1074 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main base-files arm64 7.2ubuntu1 [45.1 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main dpkg arm64 1.17.5ubuntu4 [1919 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libc-bin arm64 2.18-0ubuntu6 [1048 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libdbus-1-3 arm64 1.6.18-0ubuntu3 [107 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main libnih-dbus1 arm64 1.0.3-4ubuntu25 [12.2 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libnih1 arm64 1.0.3-4ubuntu25 [40.5 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libselinux1 arm64 2.2.2-1 [47.3 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main libpam0g arm64 1.1.8-1ubuntu2 [50.0 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules-bin arm64 1.1.8-1ubuntu2 [28.0 kB] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libpam-modules arm64 1.1.8-1ubuntu2 [210 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main passwd arm64 1:4.1.5.1-1ubuntu8 [723 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libuuid1 arm64 2.20.1-5.1ubuntu14 [9750 B] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libblkid1 arm64 2.20.1-5.1ubuntu14 [50.4 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main util-linux arm64 2.20.1-5.1ubuntu14 [423 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main libprocps3 arm64 1:3.3.9-1ubuntu2 [26.6 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main libncursesw5 arm64 5.9+20131221-1ubuntu1 [94.4 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libtinfo5 arm64 5.9+20131221-1ubuntu1 [63.4 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libncurses5 arm64 5.9+20131221-1ubuntu1 [74.5 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main procps arm64 1:3.3.9-1ubuntu2 [197 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main udev arm64 204-5ubuntu11 [714 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libudev1 arm64 204-5ubuntu11 [29.1 kB] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main ifupdown arm64 0.7.47.2ubuntu1 [48.9 kB] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main upstart arm64 1.11-0ubuntu3 [319 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main libc6-dev arm64 2.18-0ubuntu6 [1669 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main libc-dev-bin arm64 2.18-0ubuntu6 [60.3 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty/main linux-libc-dev arm64 3.13.0-8.28 [735 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.9-base arm64 4.9-20140213-0ubuntu2 [14.2 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main libgcc1 arm64 1:4.9-20140213-0ubuntu2 [32.3 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main libc6 arm64 2.18-0ubuntu6 [4056 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main e2fslibs arm64 1.42.9-2ubuntu1 [161 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main e2fsprogs arm64 1.42.9-2ubuntu1 [634 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main findutils arm64 4.4.2-7 [251 kB] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main grep arm64 2.16-1 [141 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main gzip arm64 1.6-3ubuntu1 [79.6 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main login arm64 1:4.1.5.1-1ubuntu8 [300 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main mount arm64 2.20.1-5.1ubuntu14 [108 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main ncurses-bin arm64 5.9+20131221-1ubuntu1 [131 kB] Get:38 http://ftpmaster.internal/ubuntu/ trusty/main perl arm64 5.18.2-2 [2219 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/main perl-base arm64 5.18.2-2 [1009 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/main perl-modules all 5.18.2-2 [2696 kB] Get:41 http://ftpmaster.internal/ubuntu/ trusty/main sed arm64 4.2.2-4ubuntu1 [133 kB] Get:42 http://ftpmaster.internal/ubuntu/ trusty/main tar arm64 1.27.1-1 [169 kB] Get:43 http://ftpmaster.internal/ubuntu/ trusty/main libgomp1 arm64 4.8.2-15ubuntu3 [19.1 kB] Get:44 http://ftpmaster.internal/ubuntu/ trusty/main libatomic1 arm64 4.8.2-15ubuntu3 [6074 B] Get:45 http://ftpmaster.internal/ubuntu/ trusty/main libgmp10 arm64 2:5.1.3+dfsg-1ubuntu1 [196 kB] Get:46 http://ftpmaster.internal/ubuntu/ trusty/main libisl10 arm64 0.12.2-1 [319 kB] Get:47 http://ftpmaster.internal/ubuntu/ trusty/main g++-4.8 arm64 4.8.2-15ubuntu3 [5347 kB] Get:48 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8 arm64 4.8.2-15ubuntu3 [3927 kB] Get:49 http://ftpmaster.internal/ubuntu/ trusty/main cpp-4.8 arm64 4.8.2-15ubuntu3 [3525 kB] Get:50 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++-4.8-dev arm64 4.8.2-15ubuntu3 [1048 kB] Get:51 http://ftpmaster.internal/ubuntu/ trusty/main binutils arm64 2.24-2ubuntu3 [1029 kB] Get:52 http://ftpmaster.internal/ubuntu/ trusty/main libgcc-4.8-dev arm64 4.8.2-15ubuntu3 [131 kB] Get:53 http://ftpmaster.internal/ubuntu/ trusty/main gcc-4.8-base arm64 4.8.2-15ubuntu3 [14.7 kB] Get:54 http://ftpmaster.internal/ubuntu/ trusty/main libstdc++6 arm64 4.8.2-15ubuntu3 [230 kB] Get:55 http://ftpmaster.internal/ubuntu/ trusty-proposed/main libapt-pkg4.12 arm64 0.9.15.2ubuntu1 [580 kB] Get:56 http://ftpmaster.internal/ubuntu/ trusty/main gpgv arm64 1.4.16-1ubuntu1 [134 kB] Get:57 http://ftpmaster.internal/ubuntu/ trusty/main gnupg arm64 1.4.16-1ubuntu1 [545 kB] Get:58 http://ftpmaster.internal/ubuntu/ trusty-proposed/main apt arm64 0.9.15.2ubuntu1 [950 kB] Get:59 http://ftpmaster.internal/ubuntu/ trusty/main libdebconfclient0 arm64 0.187ubuntu1 [6390 B] Get:60 http://ftpmaster.internal/ubuntu/ trusty/main base-passwd arm64 3.5.32 [45.6 kB] Get:61 http://ftpmaster.internal/ubuntu/ trusty/main bsdutils arm64 1:2.20.1-5.1ubuntu14 [32.8 kB] Get:62 http://ftpmaster.internal/ubuntu/ trusty/main ncurses-base all 5.9+20131221-1ubuntu1 [16.5 kB] Get:63 http://ftpmaster.internal/ubuntu/ trusty/main libcomerr2 arm64 1.42.9-2ubuntu1 [61.7 kB] Get:64 http://ftpmaster.internal/ubuntu/ trusty/main liblzma5 arm64 5.1.1alpha+20120614-2ubuntu2 [71.6 kB] Get:65 http://ftpmaster.internal/ubuntu/ trusty/main libmount1 arm64 2.20.1-5.1ubuntu14 [46.2 kB] Get:66 http://ftpmaster.internal/ubuntu/ trusty/main libss2 arm64 1.42.9-2ubuntu1 [65.2 kB] Get:67 http://ftpmaster.internal/ubuntu/ trusty/main libffi6 arm64 3.0.13-12 [16.1 kB] Get:68 http://ftpmaster.internal/ubuntu/ trusty/main libsqlite3-0 arm64 3.8.2-1ubuntu2 [284 kB] Get:69 http://ftpmaster.internal/ubuntu/ trusty/main libdrm2 arm64 2.4.52-1 [19.1 kB] Get:70 http://ftpmaster.internal/ubuntu/ trusty/main plymouth arm64 0.8.8-0ubuntu14 [82.2 kB] Get:71 http://ftpmaster.internal/ubuntu/ trusty/main libpng12-0 arm64 1.2.50-1ubuntu1 [105 kB] Get:72 http://ftpmaster.internal/ubuntu/ trusty/main libplymouth2 arm64 0.8.8-0ubuntu14 [61.6 kB] Get:73 http://ftpmaster.internal/ubuntu/ trusty/main libk5crypto3 arm64 1.12+dfsg-2ubuntu1 [72.3 kB] Get:74 http://ftpmaster.internal/ubuntu/ trusty/main libgssapi-krb5-2 arm64 1.12+dfsg-2ubuntu1 [91.2 kB] Get:75 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5-3 arm64 1.12+dfsg-2ubuntu1 [214 kB] Get:76 http://ftpmaster.internal/ubuntu/ trusty/main libkrb5support0 arm64 1.12+dfsg-2ubuntu1 [26.4 kB] Get:77 http://ftpmaster.internal/ubuntu/ trusty/main libcurl3-gnutls arm64 7.35.0-1ubuntu1 [133 kB] Get:78 http://ftpmaster.internal/ubuntu/ trusty/main libpam-runtime all 1.1.8-1ubuntu2 [37.7 kB] Get:79 http://ftpmaster.internal/ubuntu/ trusty/main multiarch-support arm64 2.18-0ubuntu6 [4484 B] Get:80 http://ftpmaster.internal/ubuntu/ trusty/main locales all 2.13+git20120306-10 [2700 kB] Get:81 http://ftpmaster.internal/ubuntu/ trusty-proposed/main apt-transport-https arm64 0.9.15.2ubuntu1 [24.4 kB] Get:82 http://ftpmaster.internal/ubuntu/ trusty/main cpp arm64 4:4.8.2-1ubuntu4 [27.5 kB] Get:83 http://ftpmaster.internal/ubuntu/ trusty/main dpkg-dev all 1.17.5ubuntu4 [726 kB] Get:84 http://ftpmaster.internal/ubuntu/ trusty/main libdpkg-perl all 1.17.5ubuntu4 [179 kB] Get:85 http://ftpmaster.internal/ubuntu/ trusty/main xz-utils arm64 5.1.1alpha+20120614-2ubuntu2 [75.1 kB] Get:86 http://ftpmaster.internal/ubuntu/ trusty/main gcc arm64 4:4.8.2-1ubuntu4 [4996 B] Get:87 http://ftpmaster.internal/ubuntu/ trusty/main g++ arm64 4:4.8.2-1ubuntu4 [1482 B] Get:88 http://ftpmaster.internal/ubuntu/ trusty/main pkg-create-dbgsym all 0.63 [7498 B] Get:89 http://ftpmaster.internal/ubuntu/ trusty/main pkgbinarymangler all 119 [28.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 44.1 MB in 43s (1005 kB/s) (Reading database ... 11899 files and directories currently installed.) Preparing to replace base-files 6.12ubuntu5 (using .../base-files_7.2ubuntu1_arm64.deb) ... Unpacking replacement base-files ... Setting up base-files (7.2ubuntu1) ... Installing new version of config file /etc/debian_version ... (Reading database ... 11899 files and directories currently installed.) Preparing to replace dpkg 1.17.1ubuntu1 (using .../dpkg_1.17.5ubuntu4_arm64.deb) ... Unpacking replacement dpkg ... Setting up dpkg (1.17.5ubuntu4) ... (Reading database ... 11901 files and directories currently installed.) Preparing to unpack .../libc-bin_2.18-0ubuntu6_arm64.deb ... Unpacking libc-bin (2.18-0ubuntu6) over (2.18-0ubuntu2) ... Preparing to unpack .../libc6_2.18-0ubuntu6_arm64.deb ... Unpacking libc6:arm64 (2.18-0ubuntu6) over (2.18-0ubuntu2) ... Preparing to unpack .../libgcc1_1%3a4.9-20140213-0ubuntu2_arm64.deb ... Unpacking libgcc1:arm64 (1:4.9-20140213-0ubuntu2) over (1:4.8.2-10ubuntu2) ... Selecting previously unselected package gcc-4.9-base:arm64. 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Processing triggers for libc-bin (2.18-0ubuntu6) ... (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../libpam0g_1.1.8-1ubuntu2_arm64.deb ... Unpacking libpam0g:arm64 (1.1.8-1ubuntu2) over (1.1.3-10ubuntu1) ... Setting up libpam0g:arm64 (1.1.8-1ubuntu2) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.1.8-1ubuntu2_arm64.deb ... Unpacking libpam-modules-bin (1.1.8-1ubuntu2) over (1.1.3-10ubuntu1) ... Setting up libpam-modules-bin (1.1.8-1ubuntu2) ... (Reading database ... 11908 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.1.8-1ubuntu2_arm64.deb ... Unpacking libpam-modules:arm64 (1.1.8-1ubuntu2) over (1.1.3-10ubuntu1) ... Setting up libpam-modules:arm64 (1.1.8-1ubuntu2) ... Installing new version of config file /etc/security/limits.conf ... 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Unpacking libblkid1:arm64 (2.20.1-5.1ubuntu14) over (2.20.1-5.1ubuntu11) ... Setting up libblkid1:arm64 (2.20.1-5.1ubuntu14) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../util-linux_2.20.1-5.1ubuntu14_arm64.deb ... Unpacking util-linux (2.20.1-5.1ubuntu14) over (2.20.1-5.1ubuntu11) ... Setting up util-linux (2.20.1-5.1ubuntu14) ... Installing new version of config file /etc/cron.weekly/fstrim ... Selecting previously unselected package libprocps3:arm64. (Reading database ... 11909 files and directories currently installed.) Preparing to unpack .../libprocps3_1%3a3.3.9-1ubuntu2_arm64.deb ... Unpacking libprocps3:arm64 (1:3.3.9-1ubuntu2) ... Preparing to unpack .../libncursesw5_5.9+20131221-1ubuntu1_arm64.deb ... Unpacking libncursesw5:arm64 (5.9+20131221-1ubuntu1) over (5.9+20130608-1ubuntu1) ... Preparing to unpack .../libtinfo5_5.9+20131221-1ubuntu1_arm64.deb ... 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Removing 'diversion of /bin/udevadm to /bin/udevadm.upgrade by fake-udev' update-initramfs: deferring update (trigger activated) Setting up ifupdown (0.7.47.2ubuntu1) ... Setting up upstart (1.11-0ubuntu3) ... Installing new version of config file /etc/init/rc.conf ... Setting up libc-dev-bin (2.18-0ubuntu6) ... Setting up linux-libc-dev:arm64 (3.13.0-8.28) ... Setting up libc6-dev:arm64 (2.18-0ubuntu6) ... Setting up libgomp1:arm64 (4.8.2-15ubuntu3) ... Setting up libatomic1:arm64 (4.8.2-15ubuntu3) ... Setting up libgmp10:arm64 (2:5.1.3+dfsg-1ubuntu1) ... Setting up libisl10:arm64 (0.12.2-1) ... Setting up cpp-4.8 (4.8.2-15ubuntu3) ... Setting up binutils (2.24-2ubuntu3) ... Setting up libgcc-4.8-dev:arm64 (4.8.2-15ubuntu3) ... Setting up gcc-4.8 (4.8.2-15ubuntu3) ... Setting up libstdc++-4.8-dev:arm64 (4.8.2-15ubuntu3) ... Setting up g++-4.8 (4.8.2-15ubuntu3) ... Setting up libffi6:arm64 (3.0.13-12) ... Setting up libsqlite3-0:arm64 (3.8.2-1ubuntu2) ... 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Setting up libdpkg-perl (1.17.5ubuntu4) ... Setting up dpkg-dev (1.17.5ubuntu4) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... Processing triggers for initramfs-tools (0.103ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-5594587', 'arm64', 'trusty-proposed', '--nolog', '--batch', '--archive=ubuntu', '--dist=trusty-proposed', '--purpose=PRIMARY', '--architecture=arm64', '--comp=universe', 'hmmer2_2.3.2-7ubuntu1.dsc'] Initiating build PACKAGEBUILD-5594587 with 8 jobs across 8 processor cores. Kernel reported to sbuild: 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 Automatic build of hmmer2_2.3.2-7ubuntu1 on beebe by sbuild/arm64 1.170.5 Build started at 20140216-1630 ****************************************************************************** hmmer2_2.3.2-7ubuntu1.dsc exists in cwd ** Using build dependencies supplied by package: Build-Depends: debhelper (>= 8), pvm-dev, autotools-dev, libperl4-corelibs-perl Checking for already installed source dependencies... debhelper: missing pvm-dev: missing autotools-dev: missing libperl4-corelibs-perl: missing Checking for source dependency conflicts... /usr/bin/sudo /usr/bin/apt-get --purge $CHROOT_OPTIONS -q -y install debhelper pvm-dev autotools-dev libperl4-corelibs-perl Reading package lists... Building dependency tree... Reading state information... The following package was automatically installed and is no longer required: libprocps1 Use 'apt-get autoremove' to remove it. The following extra packages will be installed: apparmor-easyprof bsdmainutils dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libedit2 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libpipeline1 libpvm3 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline-dev libreadline6-dev libssl1.0.0 libtinfo-dev libunistring0 libxml2 man-db mime-support openssh-client po-debconf pvm python3 python3-minimal python3.3 python3.3-minimal Suggested packages: wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser ssh-askpass libpam-ssh keychain monkeysphere libmail-box-perl python3-doc python3-tk python3.3-doc binfmt-support Recommended packages: curl wget lynx-cur libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xml-core xauth libmail-sendmail-perl The following NEW packages will be installed: apparmor-easyprof autotools-dev bsdmainutils debhelper dh-apparmor dh-python file gettext gettext-base groff-base intltool-debian libasprintf0c2 libcroco3 libedit2 libexpat1 libglib2.0-0 libmagic1 libmpdec2 libperl4-corelibs-perl libpipeline1 libpvm3 libpython3-stdlib libpython3.3-minimal libpython3.3-stdlib libreadline-dev libreadline6-dev libssl1.0.0 libtinfo-dev libunistring0 libxml2 man-db mime-support openssh-client po-debconf pvm pvm-dev python3 python3-minimal python3.3 python3.3-minimal 0 upgraded, 40 newly installed, 0 to remove and 0 not upgraded. Need to get 11.4 MB of archives. After this operation, 48.8 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu/ trusty/main libexpat1 arm64 2.1.0-4ubuntu1 [56.6 kB] Get:2 http://ftpmaster.internal/ubuntu/ trusty/main libmagic1 arm64 1:5.14-2ubuntu1 [176 kB] Get:3 http://ftpmaster.internal/ubuntu/ trusty/main libssl1.0.0 arm64 1.0.1f-1ubuntu1 [647 kB] Get:4 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-minimal arm64 3.3.4-1 [390 kB] Get:5 http://ftpmaster.internal/ubuntu/ trusty/main mime-support all 3.54ubuntu1 [31.7 kB] Get:6 http://ftpmaster.internal/ubuntu/ trusty/main libmpdec2 arm64 2.4.0-6 [69.4 kB] Get:7 http://ftpmaster.internal/ubuntu/ trusty/main libpython3.3-stdlib arm64 3.3.4-1 [1885 kB] Get:8 http://ftpmaster.internal/ubuntu/ trusty/main python3.3-minimal arm64 3.3.4-1 [1057 kB] Get:9 http://ftpmaster.internal/ubuntu/ trusty/main libasprintf0c2 arm64 0.18.3.1-1ubuntu2 [6604 B] Get:10 http://ftpmaster.internal/ubuntu/ trusty/main libedit2 arm64 3.1-20130712-2 [73.4 kB] Get:11 http://ftpmaster.internal/ubuntu/ trusty/main libglib2.0-0 arm64 2.39.4-0ubuntu1 [854 kB] Get:12 http://ftpmaster.internal/ubuntu/ trusty/main libpipeline1 arm64 1.2.6-2 [20.6 kB] Get:13 http://ftpmaster.internal/ubuntu/ trusty/main libxml2 arm64 2.9.1+dfsg1-3ubuntu3 [458 kB] Get:14 http://ftpmaster.internal/ubuntu/ trusty/main groff-base arm64 1.22.2-5 [1044 kB] Get:15 http://ftpmaster.internal/ubuntu/ trusty/main bsdmainutils arm64 9.0.5ubuntu1 [199 kB] Get:16 http://ftpmaster.internal/ubuntu/ trusty/main man-db arm64 2.6.6-1 [827 kB] Get:17 http://ftpmaster.internal/ubuntu/ trusty/main libcroco3 arm64 0.6.8-2ubuntu1 [65.1 kB] Get:18 http://ftpmaster.internal/ubuntu/ trusty/main libunistring0 arm64 0.9.3-5ubuntu3 [255 kB] Get:19 http://ftpmaster.internal/ubuntu/ trusty/main python3.3 arm64 3.3.4-1 [133 kB] Get:20 http://ftpmaster.internal/ubuntu/ trusty/main python3-minimal arm64 3.3.3-1 [23.5 kB] Get:21 http://ftpmaster.internal/ubuntu/ trusty/main libpython3-stdlib arm64 3.3.3-1 [7114 B] Get:22 http://ftpmaster.internal/ubuntu/ trusty/main python3 arm64 3.3.3-1 [8660 B] Get:23 http://ftpmaster.internal/ubuntu/ trusty/main dh-python all 1.20140128-1ubuntu2 [51.0 kB] Get:24 http://ftpmaster.internal/ubuntu/ trusty/main file arm64 1:5.14-2ubuntu1 [18.7 kB] Get:25 http://ftpmaster.internal/ubuntu/ trusty/main gettext-base arm64 0.18.3.1-1ubuntu2 [45.7 kB] Get:26 http://ftpmaster.internal/ubuntu/ trusty-proposed/main openssh-client arm64 1:6.5p1-4 [519 kB] Get:27 http://ftpmaster.internal/ubuntu/ trusty/main autotools-dev all 20130810.1 [44.3 kB] Get:28 http://ftpmaster.internal/ubuntu/ trusty/main gettext arm64 0.18.3.1-1ubuntu2 [769 kB] Get:29 http://ftpmaster.internal/ubuntu/ trusty/main intltool-debian all 0.35.0+20060710.1 [31.6 kB] Get:30 http://ftpmaster.internal/ubuntu/ trusty/main po-debconf all 1.0.16+nmu2ubuntu1 [210 kB] Get:31 http://ftpmaster.internal/ubuntu/ trusty/main apparmor-easyprof all 2.8.0-0ubuntu38 [20.1 kB] Get:32 http://ftpmaster.internal/ubuntu/ trusty/main dh-apparmor all 2.8.0-0ubuntu38 [7286 B] Get:33 http://ftpmaster.internal/ubuntu/ trusty/main debhelper all 9.20131127ubuntu2 [603 kB] Get:34 http://ftpmaster.internal/ubuntu/ trusty/main libperl4-corelibs-perl all 0.003-1 [43.0 kB] Get:35 http://ftpmaster.internal/ubuntu/ trusty/main libtinfo-dev arm64 5.9+20131221-1ubuntu1 [69.3 kB] Get:36 http://ftpmaster.internal/ubuntu/ trusty/main libreadline6-dev arm64 6.2-9ubuntu1 [258 kB] Get:37 http://ftpmaster.internal/ubuntu/ trusty/main libreadline-dev arm64 6.2-9ubuntu1 [934 B] Get:38 http://ftpmaster.internal/ubuntu/ trusty/universe libpvm3 arm64 3.4.5-12.5ubuntu1 [64.6 kB] Get:39 http://ftpmaster.internal/ubuntu/ trusty/universe pvm arm64 3.4.5-12.5ubuntu1 [133 kB] Get:40 http://ftpmaster.internal/ubuntu/ trusty/universe pvm-dev arm64 3.4.5-12.5ubuntu1 [252 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 11.4 MB in 13s (848 kB/s) Selecting previously unselected package libexpat1:arm64. (Reading database ... 11939 files and directories currently installed.) Preparing to unpack .../libexpat1_2.1.0-4ubuntu1_arm64.deb ... Unpacking libexpat1:arm64 (2.1.0-4ubuntu1) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../libmagic1_1%3a5.14-2ubuntu1_arm64.deb ... Unpacking libmagic1:arm64 (1:5.14-2ubuntu1) ... Selecting previously unselected package libssl1.0.0:arm64. Preparing to unpack .../libssl1.0.0_1.0.1f-1ubuntu1_arm64.deb ... Unpacking libssl1.0.0:arm64 (1.0.1f-1ubuntu1) ... Selecting previously unselected package libpython3.3-minimal:arm64. Preparing to unpack .../libpython3.3-minimal_3.3.4-1_arm64.deb ... Unpacking libpython3.3-minimal:arm64 (3.3.4-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../mime-support_3.54ubuntu1_all.deb ... Unpacking mime-support (3.54ubuntu1) ... Selecting previously unselected package libmpdec2:arm64. Preparing to unpack .../libmpdec2_2.4.0-6_arm64.deb ... 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Setting up mime-support (3.54ubuntu1) ... update-alternatives: using /usr/bin/see to provide /usr/bin/view (view) in auto mode Setting up libmpdec2:arm64 (2.4.0-6) ... Setting up libpython3.3-stdlib:arm64 (3.3.4-1) ... Setting up python3.3-minimal (3.3.4-1) ... Setting up libasprintf0c2:arm64 (0.18.3.1-1ubuntu2) ... Setting up libedit2:arm64 (3.1-20130712-2) ... Setting up libglib2.0-0:arm64 (2.39.4-0ubuntu1) ... No schema files found: doing nothing. Setting up libpipeline1:arm64 (1.2.6-2) ... Setting up libxml2:arm64 (2.9.1+dfsg1-3ubuntu3) ... Setting up groff-base (1.22.2-5) ... Setting up bsdmainutils (9.0.5ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.6.6-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcroco3:arm64 (0.6.8-2ubuntu1) ... Setting up libunistring0:arm64 (0.9.3-5ubuntu3) ... Setting up python3.3 (3.3.4-1) ... Setting up python3-minimal (3.3.3-1) ... Setting up libpython3-stdlib:arm64 (3.3.3-1) ... Setting up file (1:5.14-2ubuntu1) ... Setting up gettext-base (0.18.3.1-1ubuntu2) ... Setting up openssh-client (1:6.5p1-4) ... Setting up autotools-dev (20130810.1) ... Setting up gettext (0.18.3.1-1ubuntu2) ... Setting up intltool-debian (0.35.0+20060710.1) ... Setting up po-debconf (1.0.16+nmu2ubuntu1) ... Setting up libperl4-corelibs-perl (0.003-1) ... Setting up libtinfo-dev:arm64 (5.9+20131221-1ubuntu1) ... Setting up libreadline6-dev:arm64 (6.2-9ubuntu1) ... Setting up libreadline-dev:arm64 (6.2-9ubuntu1) ... Setting up libpvm3 (3.4.5-12.5ubuntu1) ... Setting up pvm (3.4.5-12.5ubuntu1) ... update-alternatives: using /usr/bin/rsh to provide /usr/lib/pvm3/bin/rsh (pvm-rsh) in auto mode Setting up pvm-dev (3.4.5-12.5ubuntu1) ... Setting up python3 (3.3.3-1) ... running python rtupdate hooks for python3.3... running python post-rtupdate hooks for python3.3... Setting up dh-python (1.20140128-1ubuntu2) ... Setting up apparmor-easyprof (2.8.0-0ubuntu38) ... Setting up dh-apparmor (2.8.0-0ubuntu38) ... Setting up debhelper (9.20131127ubuntu2) ... Processing triggers for libc-bin (2.18-0ubuntu6) ... Checking correctness of source dependencies... Toolchain package versions: libc6-dev_2.18-0ubuntu6 make_3.81-8.2ubuntu3 dpkg-dev_1.17.5ubuntu4 gcc-4.8_4.8.2-15ubuntu3 g++-4.8_4.8.2-15ubuntu3 binutils_2.24-2ubuntu3 libstdc++-4.8-dev_4.8.2-15ubuntu3 libstdc++6_4.8.2-15ubuntu3 ------------------------------------------------------------------------------ dpkg-source: warning: -sn is not a valid option for Dpkg::Source::Package::V3::Quilt gpgv: Signature made Sun Feb 16 16:24:07 2014 UTC using RSA key ID 97D73BA5 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./hmmer2_2.3.2-7ubuntu1.dsc dpkg-source: info: extracting hmmer2 in hmmer2-2.3.2 dpkg-source: info: unpacking hmmer2_2.3.2.orig.tar.xz dpkg-source: info: unpacking hmmer2_2.3.2-7ubuntu1.debian.tar.gz dpkg-source: info: applying version2-manpage dpkg-source: info: applying userguidepdf dpkg-buildpackage: source package hmmer2 dpkg-buildpackage: source version 2.3.2-7ubuntu1 dpkg-buildpackage: source distribution trusty dpkg-source --before-build hmmer2-2.3.2 dpkg-buildpackage: host architecture arm64 /usr/bin/fakeroot debian/rules clean dh clean --parallel --with autotools-dev dh_testdir -O--parallel dh_auto_clean -O--parallel dh_autotools-dev_restoreconfig -O--parallel dh_clean -O--parallel debian/rules build-arch dh build-arch --parallel --with autotools-dev dh_testdir -a -O--parallel dh_autotools-dev_updateconfig -a -O--parallel debian/rules override_dh_auto_configure make[1]: Entering directory `/build/buildd/hmmer2-2.3.2' dh_auto_configure -- --enable-threads --enable-lfs --enable-pvm configure: configuring HMMER for your system. configure: This is a full source distribution - using full config checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking whether your make is GNU make... yes, it is. configure: configured for optional LFS, large file support configure: enabled optional PVM (Parallel Virtual Machine) support configure: enabled POSIX multithreading support checking for pthread_setconcurrency... no checking for pthread_attr_setscope... yes checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes configure: creating ./config.status config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating Makefile config.status: creating src/config.h configure: configuring in squid configure: running /bin/bash './configure' --prefix=/usr '--build=aarch64-linux-gnu' '--prefix=/usr' '--includedir=${prefix}/include' '--mandir=${prefix}/share/man' '--infodir=${prefix}/share/info' '--sysconfdir=/etc' '--localstatedir=/var' '--libexecdir=${prefix}/lib/hmmer2' '--disable-maintainer-mode' '--disable-dependency-tracking' '--enable-threads' '--enable-lfs' '--enable-pvm' 'CFLAGS=-g -O2 -Wformat -Werror=format-security' 'CPPFLAGS=-D_FORTIFY_SOURCE=2' 'LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro' 'build_alias=aarch64-linux-gnu' --cache-file=/dev/null --srcdir=. configure: configuring the SQUID library for your system. checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether your make is GNU make... yes, it is. checking whether byte ordering is bigendian... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking how to run the C preprocessor... gcc -E checking for egrep... grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for unsigned short... yes checking size of unsigned short... 2 checking for unsigned int... yes checking size of unsigned int... 4 checking for unsigned long... yes checking size of unsigned long... 8 checking for unsigned long long... yes checking size of unsigned long long... 8 checking for strtoul... yes checking for strtoull... yes checking whether fpos_t is an arithmetic datatype... no. checking for strtoull... (cached) yes checking for ftello... yes checking for fseeko... yes checking for ftello64... yes checking for fseeko64... yes checking for ftell64... no checking for fseek64... no checking for stat64... yes checking for struct stat64... no! checking for off_t... yes checking size of off_t... 8 checking for off64_t... no checking size of off64_t... 0 checking for fpos_t... yes checking size of fpos_t... 16 configure: configured for optional LFS, large file support configure: enabled optional PVM (Parallel Virtual Machine) support configure: creating ./config.status config.status: creating Makefile config.status: creating Testsuite/Makefile config.status: creating squid.h config.status: creating squidconf.h make[1]: Leaving directory `/build/buildd/hmmer2-2.3.2' dh_auto_build -a -O--parallel make[1]: Entering directory `/build/buildd/hmmer2-2.3.2' make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/squid' gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c afetch_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c a2m.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c aligneval.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c alignio.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c clustal.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c cluster.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c dayhoff.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c eps.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c file.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c getopt.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c gki.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c gsi.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c hsregex.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c iupac.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c msa.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c msf.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c phylip.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c revcomp.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c rk.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c selex.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c seqencode.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c shuffle.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sqerror.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sqio.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c squidcore.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sre_ctype.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sre_math.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sre_random.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sre_string.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c ssi.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c stack.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c stockholm.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c stopwatch.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c translate.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c types.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c vectorops.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c weight.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c alistat_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c compalign_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c compstruct_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c revcomp_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c seqsplit_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c seqstat_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sfetch_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c shuffle_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sindex_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c sreformat_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c translate_main.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -I/include -DHAVE_CONFIG_H -c weight_main.c gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o afetch afetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o alistat alistat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o compalign compalign_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o compstruct compstruct_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o revcomp revcomp_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o seqsplit seqsplit_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o seqstat seqstat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o sindex sindex_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o sreformat sreformat_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o translate translate_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm /usr/bin/ar rcv libsquid.a a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o shuffle shuffle_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm a - a2m.o a - aligneval.o a - alignio.o a - clustal.o a - cluster.o a - dayhoff.o a - eps.o a - file.o a - getopt.o a - gki.o a - gsi.o a - hsregex.o a - iupac.o a - msa.o a - msf.o a - phylip.o a - revcomp.o a - rk.o a - selex.o a - seqencode.o a - shuffle.o a - sqerror.o a - sqio.o a - squidcore.o a - sre_ctype.o a - sre_math.o a - sre_random.o a - sre_string.o a - ssi.o a - stack.o a - stockholm.o a - stopwatch.o a - translate.o a - types.o a - vectorops.o a - weight.o ranlib libsquid.a chmod 644 libsquid.a gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o sfetch sfetch_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm gcc -g -O2 -Wformat -Werror=format-security -Wl,-Bsymbolic-functions -Wl,-z,relro -L/lib/ -DHAVE_CONFIG_H -o weight weight_main.o a2m.o aligneval.o alignio.o clustal.o cluster.o dayhoff.o eps.o file.o getopt.o gki.o gsi.o hsregex.o iupac.o msa.o msf.o phylip.o revcomp.o rk.o selex.o seqencode.o shuffle.o sqerror.o sqio.o squidcore.o sre_ctype.o sre_math.o sre_random.o sre_string.o ssi.o stack.o stockholm.o stopwatch.o translate.o types.o vectorops.o weight.o -lpvm3 -lm make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/squid' make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/squid' make[2]: Nothing to be done for `module'. make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/squid' make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/src' gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmalign.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c alphabet.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c core_algorithms.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c debug.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c display.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c emit.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c emulation.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c fast_algorithms.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c histogram.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmio.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c mathsupport.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c masks.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c misc.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c modelmakers.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c plan7.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c plan9.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c postprob.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c prior.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c pvm.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c threads.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c tophits.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c trace.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmbuild.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmcalibrate.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmconvert.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmemit.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmfetch.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmindex.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmpfam.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmsearch.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmcalibrate-pvm.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmpfam-pvm.c gcc -g -O2 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -pthread -I../squid -I/include -c hmmsearch-pvm.c gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmalign hmmalign.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmbuild hmmbuild.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmcalibrate hmmcalibrate.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmconvert hmmconvert.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmemit hmmemit.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmfetch hmmfetch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmindex hmmindex.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmpfam hmmpfam.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmsearch hmmsearch.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmcalibrate-pvm hmmcalibrate-pvm.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmpfam-pvm hmmpfam-pvm.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -L../squid -L/lib/ -o hmmsearch-pvm hmmsearch-pvm.o alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o -lpvm3 -lsquid -lm make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/src' make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/src' /usr/bin/ar rcv libhmmer.a alphabet.o core_algorithms.o debug.o display.o emit.o emulation.o fast_algorithms.o histogram.o hmmio.o mathsupport.o masks.o misc.o modelmakers.o plan7.o plan9.o postprob.o prior.o pvm.o threads.o tophits.o trace.o a - alphabet.o a - core_algorithms.o a - debug.o a - display.o a - emit.o a - emulation.o a - fast_algorithms.o a - histogram.o a - hmmio.o a - mathsupport.o a - masks.o a - misc.o a - modelmakers.o a - plan7.o a - plan9.o a - postprob.o a - prior.o a - pvm.o a - threads.o a - tophits.o a - trace.o ranlib libhmmer.a chmod 644 libhmmer.a make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/src' make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/testsuite' gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c alignalign_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c evd_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c masks_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c parsingviterbi_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c tophits_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c trace_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c viterbi_exercise.c gcc -g -O2 -Wformat -Werror=format-security -pthread -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../squid -I../src -c weeviterbi_test.c gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o masks_test -L../squid -L../src masks_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o trace_test -L../squid -L../src trace_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o parsingviterbi_test -L../squid -L../src parsingviterbi_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o weeviterbi_test -L../squid -L../src weeviterbi_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o viterbi_exercise -L../squid -L../src viterbi_exercise.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o tophits_test -L../squid -L../src tophits_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o alignalign_test -L../squid -L../src alignalign_test.o -lhmmer -lsquid -lm gcc -g -O2 -Wformat -Werror=format-security -pthread -Wl,-Bsymbolic-functions -Wl,-z,relro -DHAVE_CONFIG_H -o evd_test -L../squid -L../src evd_test.o -lhmmer -lsquid -lm make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/testsuite' make[1]: Leaving directory `/build/buildd/hmmer2-2.3.2' dh_auto_test -a -O--parallel make[1]: Entering directory `/build/buildd/hmmer2-2.3.2' (cd testsuite; make check) make[2]: Entering directory `/build/buildd/hmmer2-2.3.2/testsuite' make[2]: warning: jobserver unavailable: using -j1. Add `+' to parent make rule. Running test suite exercises. Warning: some tests may take several minutes to complete. ./sqc 2 exercises.sqc . ../src exercise 1 [ hmmalign] ... ok. exercise 2 [ hmmalign/h] ... ok. exercise 3 [ hmmalign/m] ... ok. exercise 4 [ hmmalign/o] ... ok. exercise 5 [ hmmalign/q] ... ok. exercise 6 [ hmmalign/informat] ... ok. exercise 7 [ hmmalign/selex] ... ok. exercise 8 [ hmmalign/a2m] ... ok. exercise 9 [ hmmalign/clustal] ... ok. exercise 10 [ hmmalign/msf] ... ok. exercise 11 [ hmmalign/phylip] ... ok. exercise 12 [ hmmalign/oneline] ... ok. exercise 13 [ hmmalign/withali] ... ok. exercise 14 [ hmmalign/mapali] ... ok. exercise 15 [ hmmbuild] ... ok. exercise 16 [ hmmbuild/h] ... ok. exercise 17 [ hmmbuild/F] ... ok. exercise 18 [ hmmbuild/n] ... ok. exercise 19 [ hmmbuild/o] ... ok. exercise 20 [ hmmbuild/A] ... ok. exercise 21 [ hmmbuild/f] ... ok. exercise 22 [ hmmbuild/g] ... ok. exercise 23 [ hmmbuild/s] ... ok. exercise 24 [ hmmbuild/fast] ... ok. exercise 25 [ hmmbuild/hand] ... ok. exercise 26 [ hmmbuild/null] ... ok. exercise 27 [ hmmbuild/pam] ... ok. exercise 28 [ hmmbuild/prior] ... ok. exercise 29 [ hmmbuild/wblosum] ... ok. exercise 30 [ hmmbuild/wgsc] ... ok. exercise 31 [ hmmbuild/wme] ... ok. exercise 32 [ hmmbuild/wpb] ... ok. exercise 33 [ hmmbuild/wvoronoi] ... ok. exercise 34 [ hmmbuild/wnone] ... ok. exercise 35 [ hmmbuild/noeff] ... ok. exercise 36 [ hmmbuild/pbswitch] ... ok. exercise 37 [ hmmbuild/amino] ... ok. exercise 38 [ hmmbuild/nucleic] ... ok. exercise 39 [ hmmbuild/archpri] ... ok. exercise 40 [ hmmbuild/binary] ... ok. exercise 41 [ hmmbuild/cfile] ... ok. exercise 42 [ hmmbuild/gapmax] ... ok. exercise 43 [ hmmbuild/idlevel] ... ok. exercise 44 [ hmmbuild/informat] ... ok. exercise 45 [ hmmbuild/pamwgt] ... ok. exercise 46 [ hmmbuild/swentry] ... ok. exercise 47 [ hmmbuild/swexit] ... ok. exercise 48 [ hmmbuild/verbose] ... ok. exercise 49 [ hmmcalibrate] ... ok. exercise 50 [ hmmcalibrate/h] ... ok. exercise 51 [ hmmcalibrate/fixed] ... ok. exercise 52 [ hmmcalibrate/mean] ... ok. exercise 53 [ hmmcalibrate/hist] ... ok. exercise 54 [ hmmcalibrate/num] ... ok. exercise 55 [ hmmcalibrate/sd] ... ok. exercise 56 [ hmmcalibrate/seed] ... ok. exercise 57 [ hmmconvert] ... ok. exercise 58 [ hmmconvert/h] ... ok. exercise 59 [ hmmconvert/F] ... ok. exercise 60 [ hmmconvert/a] ... ok. exercise 61 [ hmmconvert/A] ... ok. exercise 62 [ hmmconvert/b] ... ok. exercise 63 [ hmmconvert/p] ... ok. exercise 64 [ hmmconvert/P] ... ok. exercise 65 [ hmmemit] ... ok. exercise 66 [ hmmemit/a] ... ok. exercise 67 [ hmmemit/c] ... ok. exercise 68 [ hmmemit/h] ... ok. exercise 69 [ hmmemit/n] ... ok. exercise 70 [ hmmemit/o] ... ok. exercise 71 [ hmmemit/q] ... ok. exercise 72 [ hmmemit/seed] ... ok. exercise 73 [ hmmindex] ... ok. exercise 74 [ hmmindex/h] ... ok. exercise 75 [ hmmfetch] ... ok. exercise 76 [ hmmfetch/h] ... ok. exercise 77 [ hmmfetch/n] ... ok. exercise 78 [ hmmpfam] ... ok. exercise 79 [ hmmpfam/h] ... ok. exercise 80 [ hmmpfam/n] ... ok. exercise 81 [ hmmpfam/A] ... ok. exercise 82 [ hmmpfam/E] ... ok. exercise 83 [ hmmpfam/T] ... ok. exercise 84 [ hmmpfam/Z] ... ok. exercise 85 [ hmmpfam/acc] ... ok. exercise 86 [ hmmpfam/compat] ... ok. exercise 87 [ hmmpfam/cut_ga] ... ok. exercise 88 [ hmmpfam/cut_nc] ... ok. exercise 89 [ hmmpfam/cut_tc] ... ok. exercise 90 [ hmmpfam/domE] ... ok. exercise 91 [ hmmpfam/domT] ... ok. exercise 92 [ hmmpfam/forward] ... ok. exercise 93 [ hmmpfam/informat] ... ok. exercise 94 [ hmmpfam/null2] ... ok. exercise 95 [ hmmpfam/xnu] ... ok. exercise 96 [ hmmsearch] ... ok. exercise 97 [ hmmsearch/h] ... ok. exercise 98 [ hmmsearch/A] ... ok. exercise 99 [ hmmsearch/E] ... ok. exercise 100 [ hmmsearch/T] ... ok. exercise 101 [ hmmsearch/Z] ... ok. exercise 102 [ hmmsearch/compat] ... ok. exercise 103 [ hmmsearch/cut_ga] ... ok. exercise 104 [ hmmsearch/cut_nc] ... ok. exercise 105 [ hmmsearch/cut_tc] ... ok. exercise 106 [ hmmsearch/domE] ... ok. exercise 107 [ hmmsearch/domT] ... ok. exercise 108 [ hmmsearch/forward] ... ok. exercise 109 [ hmmsearch/informat] ... ok. exercise 110 [ hmmsearch/null2] ... ok. exercise 111 [ hmmsearch/xnu] ... ok. exercise 112 [ align_align] ... ok. exercise 113 [ evd] ... ok. exercise 114 [ masks] ... ok. exercise 115 [ parsingv] ... ok. exercise 116 [ tophits] ... ok. exercise 117 [ trace] ... ok. exercise 118 [ viterbi] ... ok. exercise 119 [ weeviterbi] ... ok. exercise 120 [ test1/conversion] ... ok. All 120 exercises at level <= 2 passed. System information: Sun Feb 16 16:31:55 UTC 2014 Linux beebe 3.8.0-2-mustang #12-Ubuntu SMP Thu Jan 9 09:48:54 UTC 2014 aarch64 aarch64 aarch64 GNU/Linux make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2/testsuite' make[1]: Leaving directory `/build/buildd/hmmer2-2.3.2' /usr/bin/fakeroot debian/rules binary-arch dh binary-arch --parallel --with autotools-dev dh_testroot -a -O--parallel dh_prep -a -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory `/build/buildd/hmmer2-2.3.2' dh_auto_install -- prefix=/build/buildd/hmmer2-2.3.2/debian/tmp make[2]: Entering directory `/build/buildd/hmmer2-2.3.2' mkdir -p /build/buildd/hmmer2-2.3.2/debian/tmp/bin mkdir -p /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1 for file in hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch hmmcalibrate-pvm hmmpfam-pvm hmmsearch-pvm; do\ cp src/$file /build/buildd/hmmer2-2.3.2/debian/tmp/bin/;\ done for file in hmmer hmmalign hmmbuild hmmcalibrate hmmconvert hmmemit hmmfetch hmmindex hmmpfam hmmsearch; do\ cp documentation/man/$file.man /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1/$file.1;\ done make[2]: Leaving directory `/build/buildd/hmmer2-2.3.2' # lkajan: rename binaries and man pages like this: s/hmm/hmm2/ - except hmmer.1, rename that to hmmer2.1: rename 's/^hmm/hmm2/;' /build/buildd/hmmer2-2.3.2/debian/tmp/bin/* cd /build/buildd/hmmer2-2.3.2/debian/tmp/bin; rename 's/^hmm/hmm2/;' * cd /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1; rename 's/^hmm/hmm2/;' * mv /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1/hmm2er.1 /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1/hmmer2.1 # lkajan: resolve man page hypen issue: sed -i -e 's/--/\\-\\-/g;s/-\([[:alpha:]]\)\b/\\-\1/g;' /build/buildd/hmmer2-2.3.2/debian/tmp/share/man/man1/* make[1]: Leaving directory `/build/buildd/hmmer2-2.3.2' dh_install -a -O--parallel dh_installdocs -a -O--parallel debian/rules override_dh_installchangelogs make[1]: Entering directory `/build/buildd/hmmer2-2.3.2' dh_installchangelogs -k 00README make[1]: Leaving directory `/build/buildd/hmmer2-2.3.2' dh_installman -a -O--parallel dh_perl -a -O--parallel dh_link -a -O--parallel dh_compress -a -O--parallel dh_fixperms -a -O--parallel dh_strip -a -O--parallel dh_strip debug symbol extraction: not enabling -a because /CurrentlyBuilding exists dh_strip debug symbol extraction: all non-arch-all packages for this build platform arm64: hmmer2 hmmer2-pvm dh_strip debug symbol extraction: packages to act on: hmmer2 hmmer2-pvm dh_strip debug symbol extraction: ignored packages: dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: warning: '/build/buildd/hmmer2-2.3.2/debian/hmmer2-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `hmmer2-dbgsym' in `../hmmer2-dbgsym_2.3.2-7ubuntu1_arm64.ddeb'. dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: building ddeb package dpkg-deb: warning: '/build/buildd/hmmer2-2.3.2/debian/hmmer2-pvm-dbgsym/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `hmmer2-pvm-dbgsym' in `../hmmer2-pvm-dbgsym_2.3.2-7ubuntu1_arm64.ddeb'. dh_makeshlibs -a -O--parallel dh_shlibdeps -a -O--parallel dh_installdeb -a -O--parallel dh_gencontrol -a -O--parallel dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -a -O--parallel dh_builddeb -a -O--parallel INFO: pkgstriptranslations version 119 pkgstriptranslations: processing hmmer2 (in debian/hmmer2); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/hmmer2/DEBIAN/control, package hmmer2, directory debian/hmmer2 .. removing usr/share/doc/hmmer2/changelog.gz pkgstripfiles: Truncating usr/share/doc/hmmer2/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package hmmer2 took 0 s dpkg-deb: warning: 'debian/hmmer2/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `hmmer2' in `../hmmer2_2.3.2-7ubuntu1_arm64.deb'. INFO: pkgstriptranslations version 119 pkgstriptranslations: processing hmmer2-pvm (in debian/hmmer2-pvm); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/hmmer2-pvm/DEBIAN/control, package hmmer2-pvm, directory debian/hmmer2-pvm .. removing usr/share/doc/hmmer2-pvm/changelog.gz pkgstripfiles: Truncating usr/share/doc/hmmer2-pvm/changelog.Debian.gz to topmost ten records pkgstripfiles: PNG optimization for package hmmer2-pvm took 0 s dpkg-deb: warning: 'debian/hmmer2-pvm/DEBIAN/control' contains user-defined field 'Original-Maintainer' dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package `hmmer2-pvm' in `../hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb'. dpkg-genchanges -B -mUbuntu Build Daemon >../hmmer2_2.3.2-7ubuntu1_arm64.changes dpkg-genchanges: arch-specific upload - not including arch-independent packages dpkg-genchanges: binary-only upload - not including any source code dpkg-source --after-build hmmer2-2.3.2 dpkg-buildpackage: binary only upload (no source included) ****************************************************************************** Build finished at 20140216-1632 Publishing debug debs. chroot-autobuild/build/buildd/hmmer2_2.3.2-7ubuntu1_arm64.deb: new debian package, version 2.0. size 229980 bytes: control archive=1395 bytes. 934 bytes, 21 lines control 1498 bytes, 24 lines md5sums Package: hmmer2 Version: 2.3.2-7ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 2142 Depends: libc6 (>= 2.17), libpvm3 Recommends: biosquid Suggests: hmmer2-doc (>= 2.3.2-7ubuntu1), hmmer2-pvm (>= 2.3.2-7ubuntu1) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: profile hidden Markov models for protein sequence analysis HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb: new debian package, version 2.0. size 118614 bytes: control archive=981 bytes. 972 bytes, 23 lines control 462 bytes, 7 lines md5sums Package: hmmer2-pvm Source: hmmer2 Version: 2.3.2-7ubuntu1 Architecture: arm64 Maintainer: Ubuntu Developers Installed-Size: 713 Depends: libc6 (>= 2.17), libpvm3, pvm Suggests: hmmer2-doc (>= 2.3.2-7ubuntu1) Section: science Priority: optional Homepage: http://hmmer.janelia.org/ Description: HMMER programs with PVM (Parallel Virtual Machine) support HMMER is an implementation of profile hidden Markov model methods for sensitive searches of biological sequence databases using multiple sequence alignments as queries. . Given a multiple sequence alignment as input, HMMER builds a statistical model called a "hidden Markov model" which can then be used as a query into a sequence database to find (and/or align) additional homologues of the sequence family. . This package contains HMMER programs compiled with PVM support. Original-Maintainer: Debian Med Packaging Team chroot-autobuild/build/buildd/hmmer2_2.3.2-7ubuntu1_arm64.deb: drwxr-xr-x root/root 0 2014-02-16 16:32 ./ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/ drwxr-xr-x root/root 0 2014-02-16 16:32 ./usr/bin/ -rwxr-xr-x root/root 240128 2014-02-16 16:32 ./usr/bin/hmm2search -rwxr-xr-x root/root 253824 2014-02-16 16:32 ./usr/bin/hmm2build -rwxr-xr-x root/root 231008 2014-02-16 16:32 ./usr/bin/hmm2convert -rwxr-xr-x root/root 231232 2014-02-16 16:32 ./usr/bin/hmm2align -rwxr-xr-x root/root 230640 2014-02-16 16:32 ./usr/bin/hmm2fetch -rwxr-xr-x root/root 230552 2014-02-16 16:32 ./usr/bin/hmm2index -rwxr-xr-x root/root 230928 2014-02-16 16:32 ./usr/bin/hmm2emit -rwxr-xr-x root/root 240328 2014-02-16 16:32 ./usr/bin/hmm2pfam -rwxr-xr-x root/root 239496 2014-02-16 16:32 ./usr/bin/hmm2calibrate drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-16 16:32 ./usr/share/doc/hmmer2/ -rw-r--r-- root/root 1256 2012-07-09 15:33 ./usr/share/doc/hmmer2/copyright -rw-r--r-- root/root 2161 2014-02-16 16:31 ./usr/share/doc/hmmer2/NOTES.gz -rw-r--r-- root/root 1980 2014-02-16 16:32 ./usr/share/doc/hmmer2/changelog.Debian.gz -rw-r--r-- root/root 615 2012-07-09 15:33 ./usr/share/doc/hmmer2/README.Debian -rw-r--r-- root/root 344 2012-07-06 17:16 ./usr/share/doc/hmmer2/NEWS.Debian.gz drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/man/man1/ -rw-r--r-- root/root 3046 2014-02-16 16:31 ./usr/share/man/man1/hmm2search.1.gz -rw-r--r-- root/root 1703 2014-02-16 16:31 ./usr/share/man/man1/hmm2calibrate.1.gz -rw-r--r-- root/root 1113 2014-02-16 16:31 ./usr/share/man/man1/hmm2convert.1.gz -rw-r--r-- root/root 1691 2014-02-16 16:31 ./usr/share/man/man1/hmmer2.1.gz -rw-r--r-- root/root 1748 2014-02-16 16:31 ./usr/share/man/man1/hmm2align.1.gz -rw-r--r-- root/root 945 2014-02-16 16:31 ./usr/share/man/man1/hmm2fetch.1.gz -rw-r--r-- root/root 1364 2014-02-16 16:31 ./usr/share/man/man1/hmm2emit.1.gz -rw-r--r-- root/root 752 2014-02-16 16:31 ./usr/share/man/man1/hmm2index.1.gz -rw-r--r-- root/root 3395 2014-02-16 16:31 ./usr/share/man/man1/hmm2pfam.1.gz -rw-r--r-- root/root 4764 2014-02-16 16:31 ./usr/share/man/man1/hmm2build.1.gz lrwxrwxrwx root/root 0 2014-02-16 16:31 ./usr/share/doc/hmmer2/00README.gz -> changelog.gz chroot-autobuild/build/buildd/hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb: drwxr-xr-x root/root 0 2014-02-16 16:32 ./ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/ drwxr-xr-x root/root 0 2014-02-16 16:32 ./usr/bin/ -rwxr-xr-x root/root 226320 2014-02-16 16:32 ./usr/bin/hmm2search-pvm -rwxr-xr-x root/root 230432 2014-02-16 16:32 ./usr/bin/hmm2calibrate-pvm -rwxr-xr-x root/root 230416 2014-02-16 16:32 ./usr/bin/hmm2pfam-pvm drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2014-02-16 16:32 ./usr/share/doc/hmmer2-pvm/ -rw-r--r-- root/root 1256 2012-07-09 15:33 ./usr/share/doc/hmmer2-pvm/copyright -rw-r--r-- root/root 1982 2014-02-16 16:32 ./usr/share/doc/hmmer2-pvm/changelog.Debian.gz -rw-r--r-- root/root 347 2012-08-07 16:51 ./usr/share/doc/hmmer2-pvm/README.Debian drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/man/ drwxr-xr-x root/root 0 2014-02-16 16:31 ./usr/share/man/man1/ -rw-r--r-- root/root 419 2014-02-16 16:31 ./usr/share/man/man1/hmmer2-pvm.1.gz lrwxrwxrwx root/root 0 2014-02-16 16:31 ./usr/share/doc/hmmer2-pvm/00README.gz -> changelog.gz lrwxrwxrwx root/root 0 2014-02-16 16:31 ./usr/share/man/man1/hmm2search-pvm.1.gz -> hmmer2-pvm.1.gz lrwxrwxrwx root/root 0 2014-02-16 16:31 ./usr/share/man/man1/hmm2calibrate-pvm.1.gz -> hmmer2-pvm.1.gz lrwxrwxrwx root/root 0 2014-02-16 16:31 ./usr/share/man/man1/hmm2pfam-pvm.1.gz -> hmmer2-pvm.1.gz hmmer2_2.3.2-7ubuntu1_arm64.changes: Format: 1.8 Date: Sun, 16 Feb 2014 11:23:45 -0500 Source: hmmer2 Binary: hmmer2 hmmer2-pvm hmmer2-doc Architecture: arm64 Version: 2.3.2-7ubuntu1 Distribution: trusty-proposed Urgency: low Maintainer: Ubuntu Build Daemon Changed-By: Daniel T Chen Description: hmmer2 - profile hidden Markov models for protein sequence analysis hmmer2-doc - profile hidden Markov models for protein sequence analysis (docs) hmmer2-pvm - HMMER programs with PVM (Parallel Virtual Machine) support Changes: hmmer2 (2.3.2-7ubuntu1) trusty; urgency=low . * Use autotools-dev for arm64. Checksums-Sha1: a19267ad40b6fa48670e2a40819e521428291cb1 229980 hmmer2_2.3.2-7ubuntu1_arm64.deb 4a061a215683acb95490435137fe8702a872bcc2 118614 hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb Checksums-Sha256: fecb389491248d540ef08ed08b134d73d0ed29ae58dd53df3081f6bc28be7c4a 229980 hmmer2_2.3.2-7ubuntu1_arm64.deb eba57af73504a5f6a9ee10206f1a65232a7685c8ee74b7359524184155c8d1f6 118614 hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb Files: 3a6c35f0cf257a3e8586eacf922bb405 229980 science optional hmmer2_2.3.2-7ubuntu1_arm64.deb 40749f7fef912faf59ef436bcde3f245 118614 science optional hmmer2-pvm_2.3.2-7ubuntu1_arm64.deb Original-Maintainer: Debian Med Packaging Team ****************************************************************************** Built successfully ****************************************************************************** Finished at 20140216-1632 Build needed 00:00:57, 54276k disk space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-5594587'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-5594587/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-5594587'] Unmounting chroot for build PACKAGEBUILD-5594587... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-5594587'] Removing build PACKAGEBUILD-5594587