https://launchpad.net/ubuntu/+source/htseq/0.11.2-2build1/+build/18725018 RUN: /usr/share/launchpad-buildd/bin/builder-prep Kernel version: Linux lgw01-amd64-006 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:55:01 UTC 2020 x86_64 Buildd toolchain package versions: launchpad-buildd_186 python-lpbuildd_186 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.6~git201906051340.ff11471~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.7 dpkg-dev_1.18.4ubuntu1.6 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 18 Feb 10:59:11 ntpdate[1917]: adjust time server 10.211.37.1 offset -0.000558 sec RUN: /usr/share/launchpad-buildd/bin/in-target unpack-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18725018 --image-type chroot /home/buildd/filecache-default/e96c25c651525abc9f0cabeb95ea71010abf4ecb Creating target for build PACKAGEBUILD-18725018 RUN: /usr/share/launchpad-buildd/bin/in-target mount-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18725018 Starting target for build PACKAGEBUILD-18725018 RUN: /usr/share/launchpad-buildd/bin/in-target override-sources-list --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18725018 'deb http://ftpmaster.internal/ubuntu focal main universe' 'deb http://ftpmaster.internal/ubuntu focal-security main universe' 'deb http://ftpmaster.internal/ubuntu focal-updates main universe' 'deb http://ftpmaster.internal/ubuntu focal-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-18725018 RUN: /usr/share/launchpad-buildd/bin/in-target update-debian-chroot --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18725018 Updating target for build PACKAGEBUILD-18725018 Get:1 http://ftpmaster.internal/ubuntu focal InRelease [255 kB] Get:2 http://ftpmaster.internal/ubuntu focal-security InRelease [79.7 kB] Get:3 http://ftpmaster.internal/ubuntu focal-updates InRelease [79.7 kB] Get:4 http://ftpmaster.internal/ubuntu focal-proposed InRelease [255 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 Packages [998 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main Translation-en [506 kB] Get:7 http://ftpmaster.internal/ubuntu focal/universe amd64 Packages [8652 kB] Get:8 http://ftpmaster.internal/ubuntu focal/universe Translation-en [5155 kB] Get:9 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 Packages [117 kB] Get:10 http://ftpmaster.internal/ubuntu focal-proposed/main Translation-en [47.4 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 Packages [390 kB] Get:12 http://ftpmaster.internal/ubuntu focal-proposed/universe Translation-en [264 kB] Fetched 16.8 MB in 3s (5400 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: gcc-10-base libctf-nobfd0 libctf0 libffi7 libgcc-s1 libhogweed5 libisl22 libnettle7 libperl5.30 libprocps8 perl-modules-5.30 The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils bzip2 cpp-9 debianutils e2fsprogs fdisk findutils g++-9 gcc-9 gcc-9-base gpg gpg-agent gpgconf gpgv grep gzip hostname libacl1 libapparmor1 libapt-pkg5.90 libasan5 libassuan0 libatomic1 libattr1 libaudit-common libaudit1 libbinutils libblkid1 libbz2-1.0 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libcryptsetup12 libdebconfclient0 libdevmapper1.02.1 libext2fs2 libfdisk1 libgcc-9-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libip4tc2 libitm1 libjson-c4 libkmod2 liblockfile-bin liblockfile1 liblsan0 liblz4-1 libmount1 libncurses6 libncursesw6 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre2-8-0 libpng16-16 libquadmath0 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-9-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan0 libubsan1 libudev1 libuuid1 libzstd1 linux-libc-dev login logsave lsb-base mount ncurses-base ncurses-bin openssl passwd perl perl-base procps sensible-utils systemd systemd-sysv sysvinit-utils ubuntu-keyring util-linux 112 upgraded, 11 newly installed, 0 to remove and 0 not upgraded. Need to get 68.4 MB of archives. After this operation, 47.9 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu focal/main amd64 libc6-dev amd64 2.30-0ubuntu3 [2549 kB] Get:2 http://ftpmaster.internal/ubuntu focal/main amd64 libc-dev-bin amd64 2.30-0ubuntu3 [71.8 kB] Get:3 http://ftpmaster.internal/ubuntu focal/main amd64 linux-libc-dev amd64 5.4.0-14.17 [1133 kB] Get:4 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-10-base amd64 10-20200211-1ubuntu1 [18.8 kB] Get:5 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-s1 amd64 10-20200211-1ubuntu1 [41.8 kB] Get:6 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc1 amd64 1:10-20200211-1ubuntu1 [41.7 kB] Get:7 http://ftpmaster.internal/ubuntu focal/main amd64 libc6 amd64 2.30-0ubuntu3 [2725 kB] Get:8 http://ftpmaster.internal/ubuntu focal/main amd64 base-files amd64 11ubuntu2 [60.1 kB] Get:9 http://ftpmaster.internal/ubuntu focal/main amd64 debianutils amd64 4.9.1 [85.8 kB] Get:10 http://ftpmaster.internal/ubuntu focal/main amd64 bash amd64 5.0-5ubuntu1 [639 kB] Get:11 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 bsdutils amd64 1:2.34-0.1ubuntu6 [63.5 kB] Get:12 http://ftpmaster.internal/ubuntu focal/main amd64 findutils amd64 4.7.0-1ubuntu1 [329 kB] Get:13 http://ftpmaster.internal/ubuntu focal/main amd64 grep amd64 3.4-1 [151 kB] Get:14 http://ftpmaster.internal/ubuntu focal/main amd64 gzip amd64 1.10-0ubuntu4 [95.3 kB] Get:15 http://ftpmaster.internal/ubuntu focal/main amd64 hostname amd64 3.23 [11.4 kB] Get:16 http://ftpmaster.internal/ubuntu focal/main amd64 login amd64 1:4.8.1-1ubuntu1 [221 kB] Get:17 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-bin amd64 6.1+20191019-1ubuntu1 [172 kB] Get:18 http://ftpmaster.internal/ubuntu focal/main amd64 perl-modules-5.30 all 5.30.0-9 [2739 kB] Get:19 http://ftpmaster.internal/ubuntu focal/main amd64 libperl5.30 amd64 5.30.0-9 [3950 kB] Get:20 http://ftpmaster.internal/ubuntu focal/main amd64 perl amd64 5.30.0-9 [224 kB] Get:21 http://ftpmaster.internal/ubuntu focal/main amd64 perl-base amd64 5.30.0-9 [1511 kB] Get:22 http://ftpmaster.internal/ubuntu focal/main amd64 bzip2 amd64 1.0.8-2 [34.1 kB] Get:23 http://ftpmaster.internal/ubuntu focal/main amd64 libbz2-1.0 amd64 1.0.8-2 [32.3 kB] Get:24 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libblkid1 amd64 2.34-0.1ubuntu6 [137 kB] Get:25 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libuuid1 amd64 2.34-0.1ubuntu6 [20.4 kB] Get:26 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libfdisk1 amd64 2.34-0.1ubuntu6 [175 kB] Get:27 http://ftpmaster.internal/ubuntu focal/main amd64 libpcre2-8-0 amd64 10.34-7 [197 kB] Get:28 http://ftpmaster.internal/ubuntu focal/main amd64 libselinux1 amd64 3.0-1 [68.7 kB] Get:29 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libmount1 amd64 2.34-0.1ubuntu6 [149 kB] Get:30 http://ftpmaster.internal/ubuntu focal/main amd64 libncurses6 amd64 6.1+20191019-1ubuntu1 [101 kB] Get:31 http://ftpmaster.internal/ubuntu focal/main amd64 libtinfo6 amd64 6.1+20191019-1ubuntu1 [85.9 kB] Get:32 http://ftpmaster.internal/ubuntu focal/main amd64 libncursesw6 amd64 6.1+20191019-1ubuntu1 [132 kB] Get:33 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libsmartcols1 amd64 2.34-0.1ubuntu6 [100 kB] Get:34 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 fdisk amd64 2.34-0.1ubuntu6 [119 kB] Get:35 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 util-linux amd64 2.34-0.1ubuntu6 [1022 kB] Get:36 http://ftpmaster.internal/ubuntu focal/main amd64 libdebconfclient0 amd64 0.251ubuntu1 [6160 B] Get:37 http://ftpmaster.internal/ubuntu focal/main amd64 base-passwd amd64 3.5.47 [47.7 kB] Get:38 http://ftpmaster.internal/ubuntu focal/main amd64 libc-bin amd64 2.30-0ubuntu3 [625 kB] Get:39 http://ftpmaster.internal/ubuntu focal/main amd64 ncurses-base all 6.1+20191019-1ubuntu1 [17.9 kB] Get:40 http://ftpmaster.internal/ubuntu focal/main amd64 lsb-base all 11.1.0ubuntu2 [12.1 kB] Get:41 http://ftpmaster.internal/ubuntu focal/main amd64 sysvinit-utils amd64 2.96-2.1ubuntu1 [20.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 libgpg-error0 amd64 1.37-1 [58.0 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 libgcrypt20 amd64 1.8.5-3ubuntu1 [419 kB] Get:44 http://ftpmaster.internal/ubuntu focal/main amd64 liblz4-1 amd64 1.9.2-2 [55.9 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++6 amd64 10-20200211-1ubuntu1 [502 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 systemd-sysv amd64 244.2-1ubuntu1 [9368 B] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libacl1 amd64 2.2.53-5ubuntu1 [18.7 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libapparmor1 amd64 2.13.3-7ubuntu1 [34.3 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit-common all 1:2.8.5-2ubuntu5 [4076 B] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libcap-ng0 amd64 0.7.9-2.1build1 [11.1 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 libaudit1 amd64 1:2.8.5-2ubuntu5 [39.1 kB] Get:52 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libcap2 amd64 1:2.32-1 [15.9 kB] Get:53 http://ftpmaster.internal/ubuntu focal/main amd64 libudev1 amd64 244.2-1ubuntu1 [77.1 kB] Get:54 http://ftpmaster.internal/ubuntu focal/main amd64 libdevmapper1.02.1 amd64 2:1.02.167-1ubuntu1 [127 kB] Get:55 http://ftpmaster.internal/ubuntu focal/main amd64 libjson-c4 amd64 0.13.1+dfsg-6 [29.2 kB] Get:56 http://ftpmaster.internal/ubuntu focal/main amd64 libssl1.1 amd64 1.1.1d-2ubuntu3 [1316 kB] Get:57 http://ftpmaster.internal/ubuntu focal/main amd64 libcryptsetup12 amd64 2:2.2.2-3ubuntu1 [182 kB] Get:58 http://ftpmaster.internal/ubuntu focal/main amd64 libnettle7 amd64 3.5.1+really3.5.1-2 [114 kB] Get:59 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libgmp10 amd64 2:6.2.0+dfsg-3 [240 kB] Get:60 http://ftpmaster.internal/ubuntu focal/main amd64 libhogweed5 amd64 3.5.1+really3.5.1-2 [138 kB] Get:61 http://ftpmaster.internal/ubuntu focal/main amd64 libffi7 amd64 3.3-3 [19.6 kB] Get:62 http://ftpmaster.internal/ubuntu focal/main amd64 libp11-kit0 amd64 0.23.20-1build1 [188 kB] Get:63 http://ftpmaster.internal/ubuntu focal/main amd64 libtasn1-6 amd64 4.16.0-2 [38.1 kB] Get:64 http://ftpmaster.internal/ubuntu focal/main amd64 libgnutls30 amd64 3.6.11.1-2ubuntu2 [793 kB] Get:65 http://ftpmaster.internal/ubuntu focal/main amd64 libip4tc2 amd64 1.8.4-3ubuntu1 [18.8 kB] Get:66 http://ftpmaster.internal/ubuntu focal/main amd64 libkmod2 amd64 26+20191223-1ubuntu1 [44.3 kB] Get:67 http://ftpmaster.internal/ubuntu focal/main amd64 libpam0g amd64 1.3.1-5ubuntu4 [55.4 kB] Get:68 http://ftpmaster.internal/ubuntu focal/main amd64 libseccomp2 amd64 2.4.2-2ubuntu2 [40.3 kB] Get:69 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 mount amd64 2.34-0.1ubuntu6 [115 kB] Get:70 http://ftpmaster.internal/ubuntu focal/main amd64 systemd amd64 244.2-1ubuntu1 [3682 kB] Get:71 http://ftpmaster.internal/ubuntu focal/main amd64 libsystemd0 amd64 244.2-1ubuntu1 [261 kB] Get:72 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libzstd1 amd64 1.4.4+dfsg-3 [237 kB] Get:73 http://ftpmaster.internal/ubuntu focal/main amd64 libapt-pkg5.90 amd64 1.9.9 [854 kB] Get:74 http://ftpmaster.internal/ubuntu focal/main amd64 gpgv amd64 2.2.17-3ubuntu1 [200 kB] Get:75 http://ftpmaster.internal/ubuntu focal/main amd64 ubuntu-keyring all 2020.02.11.1 [22.3 kB] Get:76 http://ftpmaster.internal/ubuntu focal/main amd64 apt amd64 1.9.9 [1280 kB] Get:77 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules-bin amd64 1.3.1-5ubuntu4 [37.7 kB] Get:78 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-modules amd64 1.3.1-5ubuntu4 [250 kB] Get:79 http://ftpmaster.internal/ubuntu focal/main amd64 logsave amd64 1.45.5-2ubuntu1 [10.2 kB] Get:80 http://ftpmaster.internal/ubuntu focal/main amd64 libext2fs2 amd64 1.45.5-2ubuntu1 [183 kB] Get:81 http://ftpmaster.internal/ubuntu focal/main amd64 e2fsprogs amd64 1.45.5-2ubuntu1 [527 kB] Get:82 http://ftpmaster.internal/ubuntu focal/main amd64 libattr1 amd64 1:2.4.48-5 [12.7 kB] Get:83 http://ftpmaster.internal/ubuntu focal/main amd64 libpam-runtime all 1.3.1-5ubuntu4 [37.3 kB] Get:84 http://ftpmaster.internal/ubuntu focal/main amd64 libsepol1 amd64 3.0-1 [252 kB] Get:85 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage-common all 3.0-1 [9880 B] Get:86 http://ftpmaster.internal/ubuntu focal/main amd64 libsemanage1 amd64 3.0-1 [85.3 kB] Get:87 http://ftpmaster.internal/ubuntu focal/main amd64 passwd amd64 1:4.8.1-1ubuntu1 [797 kB] Get:88 http://ftpmaster.internal/ubuntu focal/main amd64 libgomp1 amd64 10-20200211-1ubuntu1 [101 kB] Get:89 http://ftpmaster.internal/ubuntu focal/main amd64 libitm1 amd64 10-20200211-1ubuntu1 [26.3 kB] Get:90 http://ftpmaster.internal/ubuntu focal/main amd64 libatomic1 amd64 10-20200211-1ubuntu1 [9308 B] Get:91 http://ftpmaster.internal/ubuntu focal/main amd64 libasan5 amd64 9.2.1-28ubuntu1 [395 kB] Get:92 http://ftpmaster.internal/ubuntu focal/main amd64 liblsan0 amd64 10-20200211-1ubuntu1 [145 kB] Get:93 http://ftpmaster.internal/ubuntu focal/main amd64 libtsan0 amd64 10-20200211-1ubuntu1 [320 kB] Get:94 http://ftpmaster.internal/ubuntu focal/main amd64 libubsan1 amd64 10-20200211-1ubuntu1 [137 kB] Get:95 http://ftpmaster.internal/ubuntu focal/main amd64 libquadmath0 amd64 10-20200211-1ubuntu1 [147 kB] Get:96 http://ftpmaster.internal/ubuntu focal/main amd64 g++-9 amd64 9.2.1-28ubuntu1 [8396 kB] Get:97 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9 amd64 9.2.1-28ubuntu1 [8222 kB] Get:98 http://ftpmaster.internal/ubuntu focal/main amd64 libstdc++-9-dev amd64 9.2.1-28ubuntu1 [1709 kB] Get:99 http://ftpmaster.internal/ubuntu focal/main amd64 libgcc-9-dev amd64 9.2.1-28ubuntu1 [2358 kB] Get:100 http://ftpmaster.internal/ubuntu focal/main amd64 libisl22 amd64 0.22-2 [592 kB] Get:101 http://ftpmaster.internal/ubuntu focal/main amd64 libcc1-0 amd64 10-20200211-1ubuntu1 [41.2 kB] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-x86-64-linux-gnu amd64 2.34-1ubuntu1 [1613 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 libbinutils amd64 2.34-1ubuntu1 [474 kB] Get:104 http://ftpmaster.internal/ubuntu focal/main amd64 binutils amd64 2.34-1ubuntu1 [3384 B] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 binutils-common amd64 2.34-1ubuntu1 [206 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 libctf-nobfd0 amd64 2.34-1ubuntu1 [46.7 kB] Get:107 http://ftpmaster.internal/ubuntu focal/main amd64 libctf0 amd64 2.34-1ubuntu1 [46.7 kB] Get:108 http://ftpmaster.internal/ubuntu focal/main amd64 cpp-9 amd64 9.2.1-28ubuntu1 [7489 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 gcc-9-base amd64 9.2.1-28ubuntu1 [19.0 kB] Get:110 http://ftpmaster.internal/ubuntu focal/main amd64 libcom-err2 amd64 1.45.5-2ubuntu1 [9544 B] Get:111 http://ftpmaster.internal/ubuntu focal/main amd64 libss2 amd64 1.45.5-2ubuntu1 [11.3 kB] Get:112 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 libprocps8 amd64 2:3.3.16-1ubuntu1 [33.3 kB] Get:113 http://ftpmaster.internal/ubuntu focal-proposed/main amd64 procps amd64 2:3.3.16-1ubuntu1 [233 kB] Get:114 http://ftpmaster.internal/ubuntu focal/main amd64 sensible-utils all 0.0.12+nmu1 [15.0 kB] Get:115 http://ftpmaster.internal/ubuntu focal/main amd64 libsqlite3-0 amd64 3.31.1-1ubuntu1 [548 kB] Get:116 http://ftpmaster.internal/ubuntu focal/main amd64 openssl amd64 1.1.1d-2ubuntu3 [617 kB] Get:117 http://ftpmaster.internal/ubuntu focal/main amd64 libpng16-16 amd64 1.6.37-2 [179 kB] Get:118 http://ftpmaster.internal/ubuntu focal/main amd64 libassuan0 amd64 2.5.3-7ubuntu2 [35.7 kB] Get:119 http://ftpmaster.internal/ubuntu focal/main amd64 gpg amd64 2.2.17-3ubuntu1 [479 kB] Get:120 http://ftpmaster.internal/ubuntu focal/main amd64 gpgconf amd64 2.2.17-3ubuntu1 [124 kB] Get:121 http://ftpmaster.internal/ubuntu focal/main amd64 gpg-agent amd64 2.2.17-3ubuntu1 [232 kB] Get:122 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile-bin amd64 1.16-1.1 [11.7 kB] Get:123 http://ftpmaster.internal/ubuntu focal/main amd64 liblockfile1 amd64 1.16-1.1 [6680 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 68.4 MB in 2s (44.1 MB/s) (Reading database ... 12741 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.30-0ubuntu3_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../libc-dev-bin_2.30-0ubuntu3_amd64.deb ... Unpacking libc-dev-bin (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Preparing to unpack .../linux-libc-dev_5.4.0-14.17_amd64.deb ... Unpacking linux-libc-dev:amd64 (5.4.0-14.17) over (5.3.0-18.19) ... Selecting previously unselected package gcc-10-base:amd64. Preparing to unpack .../gcc-10-base_10-20200211-1ubuntu1_amd64.deb ... Unpacking gcc-10-base:amd64 (10-20200211-1ubuntu1) ... Setting up gcc-10-base:amd64 (10-20200211-1ubuntu1) ... Selecting previously unselected package libgcc-s1:amd64. (Reading database ... 12751 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10-20200211-1ubuntu1_amd64.deb ... Unpacking libgcc-s1:amd64 (10-20200211-1ubuntu1) ... Replacing files in old package libgcc1:amd64 (1:9.2.1-9ubuntu2) ... Setting up libgcc-s1:amd64 (10-20200211-1ubuntu1) ... (Reading database ... 12753 files and directories currently installed.) Preparing to unpack .../libgcc1_1%3a10-20200211-1ubuntu1_amd64.deb ... Unpacking libgcc1 (1:10-20200211-1ubuntu1) over (1:9.2.1-9ubuntu2) ... Setting up libgcc1 (1:10-20200211-1ubuntu1) ... (Reading database ... 12754 files and directories currently installed.) Preparing to unpack .../libc6_2.30-0ubuntu3_amd64.deb ... Unpacking libc6:amd64 (2.30-0ubuntu3) over (2.30-0ubuntu2) ... Setting up libc6:amd64 (2.30-0ubuntu3) ... (Reading database ... 12754 files and directories currently installed.) Preparing to unpack .../base-files_11ubuntu2_amd64.deb ... Unpacking base-files (11ubuntu2) over (10.2ubuntu7) ... Setting up base-files (11ubuntu2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... 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RUN: /usr/share/launchpad-buildd/bin/sbuild-package PACKAGEBUILD-18725018 amd64 focal-proposed -c chroot:build-PACKAGEBUILD-18725018 --arch=amd64 --dist=focal-proposed --nolog -A htseq_0.11.2-2build1.dsc Initiating build PACKAGEBUILD-18725018 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-173-generic #203-Ubuntu SMP Wed Jan 15 02:55:01 UTC 2020 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-006.buildd +==============================================================================+ | htseq 0.11.2-2build1 (amd64) 18 Feb 2020 10:59 | +==============================================================================+ Package: htseq Version: 0.11.2-2build1 Source Version: 0.11.2-2build1 Distribution: focal-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/htseq-s1Dipr/htseq-0.11.2' with '<>' I: NOTICE: Log filtering will replace 'build/htseq-s1Dipr' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-18725018/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- htseq_0.11.2-2build1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-ae6nQ8/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-ae6nQ8/apt_archive ./ InRelease Get:2 copy:/<>/resolver-ae6nQ8/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-ae6nQ8/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-ae6nQ8/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-ae6nQ8/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (242 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-ae6nQ8/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 14676 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-debian, python3-setuptools, python3-all-dev, python3-numpy, python3-matplotlib, python3-pysam, swig, cython3 dpkg-deb: building package 'sbuild-build-depends-htseq-dummy' in '/<>/resolver-CL2MsF/apt_archive/sbuild-build-depends-htseq-dummy.deb'. Ign:1 copy:/<>/resolver-CL2MsF/apt_archive ./ InRelease Get:2 copy:/<>/resolver-CL2MsF/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-CL2MsF/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-CL2MsF/apt_archive ./ Sources [265 B] Get:5 copy:/<>/resolver-CL2MsF/apt_archive ./ Packages [588 B] Fetched 2972 B in 0s (250 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install htseq build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libffi6 libhogweed4 libisl21 libnettle6 libperl5.28 perl-modules-5.28 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu65 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-chardet python3-cycler python3-dateutil python3-debian python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-pysam python3-setuptools python3-six python3.7 python3.7-minimal python3.8 python3.8-dev python3.8-minimal swig swig3.0 ttf-bitstream-vera zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation cython-doc dh-make gettext-doc libasprintf-dev libgettextpo-dev groff krb5-doc krb5-user libjs-jquery-ui-docs libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-scipy python3-sip python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft gfortran python-numpy-doc python3-pytest python3-numpy-dbg python-pyparsing-doc python-setuptools-doc python3.7-venv python3.7-doc binfmt-support python3.8-venv python3.8-doc swig-doc swig-examples swig3.0-examples swig3.0-doc Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs javascript-common krb5-locales publicsuffix libsasl2-modules libltdl-dev libmail-sendmail-perl python3-apt python3-pil python3-tk The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils cython3 debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasn1-8-heimdal libblas3 libbrotli1 libbsd0 libcroco3 libcurl3-gnutls libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhts3 libhx509-5-heimdal libicu65 libjs-jquery libjs-jquery-ui libk5crypto3 libkeyutils1 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblapack3 libldap-2.4-2 libldap-common libmagic-mgc libmagic1 libmpdec2 libnghttp2-14 libpipeline1 libpsl5 libpython3-all-dev libpython3-dev libpython3-stdlib libpython3.7-minimal libpython3.7-stdlib libpython3.8 libpython3.8-dev libpython3.8-minimal libpython3.8-stdlib libroken18-heimdal librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libssh-4 libsub-override-perl libtool libuchardet0 libwind0-heimdal libxml2 m4 man-db mime-support po-debconf python-matplotlib-data python3 python3-all python3-all-dev python3-chardet python3-cycler python3-dateutil python3-debian python3-dev python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal python3-numpy python3-pkg-resources python3-pyparsing python3-pysam python3-setuptools python3-six python3.7 python3.7-minimal python3.8 python3.8-dev python3.8-minimal sbuild-build-depends-htseq-dummy swig swig3.0 ttf-bitstream-vera zlib1g-dev 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. Need to get 59.1 MB of archives. After this operation, 245 MB of additional disk space will be used. 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amd64 autotools-dev all 20180224.1 [39.6 kB] Get:42 http://ftpmaster.internal/ubuntu focal/main amd64 automake all 1:1.16.1-4ubuntu6 [522 kB] Get:43 http://ftpmaster.internal/ubuntu focal/main amd64 autopoint all 0.19.8.1-10 [412 kB] Get:44 http://ftpmaster.internal/ubuntu focal/universe amd64 cython3 amd64 0.29.14-0.1ubuntu2 [2078 kB] Get:45 http://ftpmaster.internal/ubuntu focal/main amd64 libtool all 2.4.6-13 [161 kB] Get:46 http://ftpmaster.internal/ubuntu focal/main amd64 dh-autoreconf all 19 [16.1 kB] Get:47 http://ftpmaster.internal/ubuntu focal/main amd64 libdebhelper-perl all 12.9ubuntu1 [62.0 kB] Get:48 http://ftpmaster.internal/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-1 [90.4 kB] Get:49 http://ftpmaster.internal/ubuntu focal/main amd64 libsub-override-perl all 0.09-2 [9532 B] Get:50 http://ftpmaster.internal/ubuntu focal/main amd64 libfile-stripnondeterminism-perl all 1.6.3-2 [16.0 kB] Get:51 http://ftpmaster.internal/ubuntu focal/main amd64 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python3-chardet all 3.0.4-4build1 [80.4 kB] Get:101 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python3-cycler all 0.10.0-3 [8132 B] Get:102 http://ftpmaster.internal/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] Get:103 http://ftpmaster.internal/ubuntu focal/main amd64 python3-debian all 0.1.36build1 [65.0 kB] Get:104 http://ftpmaster.internal/ubuntu focal-proposed/universe amd64 python3-kiwisolver amd64 1.0.1-3 [259 kB] Get:105 http://ftpmaster.internal/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] Get:106 http://ftpmaster.internal/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu2 [3414 kB] Get:107 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu2 [4550 kB] Get:108 http://ftpmaster.internal/ubuntu focal/universe amd64 python3-pysam amd64 0.15.4+ds-1 [2774 kB] Get:109 http://ftpmaster.internal/ubuntu focal/main amd64 python3-setuptools all 44.0.0-1 [257 kB] Get:110 http://ftpmaster.internal/ubuntu focal/universe amd64 swig3.0 amd64 3.0.12-2.2 [1110 kB] Get:111 http://ftpmaster.internal/ubuntu focal/universe amd64 swig amd64 3.0.12-2.2 [6464 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 59.1 MB in 3s (20.7 MB/s) Selecting previously unselected package libpython3.8-minimal:amd64. 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Setting up libnghttp2-14:amd64 (1.40.0-1) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up libdeflate0 (1.5-3) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up libldap-common (2.4.49+dfsg-1ubuntu1) ... Setting up libpython3.7-minimal:amd64 (3.7.6-1ubuntu2) ... Setting up libkrb5support0:amd64 (1.17-6ubuntu4) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-2) ... Setting up autotools-dev (20180224.1) ... Setting up libblas3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libexpat1-dev:amd64 (2.2.9-1) ... Setting up libfreetype6:amd64 (2.10.1-2) ... Setting up swig3.0 (3.0.12-2.2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.17-6ubuntu4) ... Setting up python3.7-minimal (3.7.6-1ubuntu2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2) ... Setting up libgfortran5:amd64 (10-20200211-1ubuntu1) ... Setting up libroken18-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1ubuntu3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libkrb5-3:amd64 (1.17-6ubuntu4) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libjs-jquery (3.3.1~dfsg-3) ... Setting up libpython3.8-stdlib:amd64 (3.8.2~rc1-1ubuntu1) ... Setting up python3.8 (3.8.2~rc1-1ubuntu1) ... Setting up python-matplotlib-data (3.1.2-1ubuntu2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1build1) ... Setting up libxml2:amd64 (2.9.10+dfsg-1ubuntu1) ... Setting up libpython3-stdlib:amd64 (3.8.0-3ubuntu1) ... Setting up libheimbase1-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libfile-stripnondeterminism-perl (1.6.3-2) ... Setting up libpython3.7-stdlib:amd64 (3.7.6-1ubuntu2) ... Setting up liblapack3:amd64 (3.9.0-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up swig (3.0.12-2.2) ... Setting up libtool (2.4.6-13) ... Setting up libasn1-8-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up m4 (1.4.18-4) ... Setting up python3 (3.8.0-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libhcrypto4-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-six (1.14.0-2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libwind0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libjs-jquery-ui (1.12.1+dfsg-5) ... Setting up python3-pyparsing (2.4.6-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8:amd64 (3.8.2~rc1-1ubuntu1) ... Setting up python3-cycler (0.10.0-3) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-6ubuntu4) ... Setting up cython3 (0.29.14-0.1ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libssh-4:amd64 (0.9.3-2ubuntu1) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.6.3-2) ... Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up python3-dateutil (2.7.3-3ubuntu1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-lib2to3 (3.8.0-1) ... Setting up python3-pkg-resources (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up automake (1:1.16.1-4ubuntu6) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3-distutils (3.8.0-1) ... Setting up dh-python (4.20191017ubuntu5) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.7 (3.7.6-1ubuntu2) ... Setting up gettext (0.19.8.1-10) ... Setting up python3-setuptools (44.0.0-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libhx509-5-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-all (3.8.0-3ubuntu1) ... Setting up man-db (2.9.0-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up python3-chardet (3.0.4-4build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3.8-dev:amd64 (3.8.2~rc1-1ubuntu1) ... Setting up python3-debian (0.1.36build1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3-kiwisolver (1.0.1-3) ... Setting up python3-numpy (1:1.17.4-5ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up python3.8-dev (3.8.2~rc1-1ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up python3-matplotlib (3.1.2-1ubuntu2) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up libpython3-dev:amd64 (3.8.0-3ubuntu1) ... Setting up po-debconf (1.0.21) ... Setting up libheimntlm0-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (7.7.0+dfsg-1) ... Setting up libpython3-all-dev:amd64 (3.8.0-3ubuntu1) ... Setting up python3-dev (3.8.0-3ubuntu1) ... Setting up python3-all-dev (3.8.0-3ubuntu1) ... Setting up libldap-2.4-2:amd64 (2.4.49+dfsg-1ubuntu1) ... Setting up libcurl3-gnutls:amd64 (7.67.0-2ubuntu1) ... Setting up libhts3:amd64 (1.10.2-3) ... Setting up python3-pysam (0.15.4+ds-1) ... /usr/lib/python3.8/subprocess.py:838: RuntimeWarning: line buffering (buffering=1) isn't supported in binary mode, the default buffer size will be used self.stdin = io.open(p2cwrite, 'wb', bufsize) Setting up debhelper (12.9ubuntu1) ... Setting up sbuild-build-depends-htseq-dummy (0.invalid.0) ... Setting up dh-autoreconf (19) ... Processing triggers for libc-bin (2.30-0ubuntu3) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-173-generic amd64 (x86_64) Toolchain package versions: binutils_2.34-1ubuntu1 dpkg-dev_1.19.7ubuntu2 g++-9_9.2.1-28ubuntu1 gcc-9_9.2.1-28ubuntu1 libc6-dev_2.30-0ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 linux-libc-dev_5.4.0-14.17 Package versions: adduser_3.118ubuntu1 advancecomp_2.1-2.1 apt_1.9.9 autoconf_2.69-11.1 automake_1:1.16.1-4ubuntu6 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11ubuntu2 base-passwd_3.5.47 bash_5.0-5ubuntu1 binutils_2.34-1ubuntu1 binutils-common_2.34-1ubuntu1 binutils-x86-64-linux-gnu_2.34-1ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.34-0.1ubuntu6 build-essential_12.8ubuntu1 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3ubuntu2 cpp_4:9.2.1-3.1ubuntu1 cpp-9_9.2.1-28ubuntu1 cython3_0.29.14-0.1ubuntu2 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.9ubuntu1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20191017ubuntu5 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dpkg_1.19.7ubuntu2 dpkg-dev_1.19.7ubuntu2 dwz_0.13-5 e2fsprogs_1.45.5-2ubuntu1 fakeroot_1.24-1 fdisk_2.34-0.1ubuntu6 file_1:5.38-4 findutils_4.7.0-1ubuntu1 fonts-lyx_2.3.4.2-2 g++_4:9.2.1-3.1ubuntu1 g++-9_9.2.1-28ubuntu1 gcc_4:9.2.1-3.1ubuntu1 gcc-10-base_10-20200211-1ubuntu1 gcc-9_9.2.1-28ubuntu1 gcc-9-base_9.2.1-28ubuntu1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpg_2.2.17-3ubuntu1 gpg-agent_2.2.17-3ubuntu1 gpgconf_2.2.17-3ubuntu1 gpgv_2.2.17-3ubuntu1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-0ubuntu4 hostname_3.23 init_1.57 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5ubuntu1 libapparmor1_2.13.3-7ubuntu1 libapt-pkg5.90_1.9.9 libarchive-zip-perl_1.67-1 libargon2-1_0~20171227-0.2 libasan5_9.2.1-28ubuntu1 libasn1-8-heimdal_7.7.0+dfsg-1 libassuan0_2.5.3-7ubuntu2 libatomic1_10-20200211-1ubuntu1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2ubuntu5 libaudit1_1:2.8.5-2ubuntu5 libbinutils_2.34-1ubuntu1 libblas3_3.9.0-1 libblkid1_2.34-0.1ubuntu6 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-0ubuntu3 libc-dev-bin_2.30-0ubuntu3 libc6_2.30-0ubuntu3 libc6-dev_2.30-0ubuntu3 libcap-ng0_0.7.9-2.1build1 libcap2_1:2.32-1 libcc1-0_10-20200211-1ubuntu1 libcom-err2_1.45.5-2ubuntu1 libcroco3_0.6.13-1 libcryptsetup12_2:2.2.2-3ubuntu1 libctf-nobfd0_2.34-1ubuntu1 libctf0_2.34-1ubuntu1 libcurl3-gnutls_7.67.0-2ubuntu1 libdb5.3_5.3.28+dfsg1-0.6ubuntu1 libdebconfclient0_0.251ubuntu1 libdebhelper-perl_12.9ubuntu1 libdeflate0_1.5-3 libdevmapper1.02.1_2:1.02.167-1ubuntu1 libdpkg-perl_1.19.7ubuntu2 libelf1_0.176-1.1build1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.5-2ubuntu1 libfakeroot_1.24-1 libfdisk1_2.34-0.1ubuntu6 libffi6_3.2.1-9 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-28ubuntu1 libgcc-s1_10-20200211-1ubuntu1 libgcc1_1:10-20200211-1ubuntu1 libgcrypt20_1.8.5-3ubuntu1 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10-20200211-1ubuntu1 libglib2.0-0_2.63.3-3 libgmp10_2:6.2.0+dfsg-3 libgnutls30_3.6.11.1-2ubuntu2 libgomp1_10-20200211-1ubuntu1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-6ubuntu4 libgssapi3-heimdal_7.7.0+dfsg-1 libhcrypto4-heimdal_7.7.0+dfsg-1 libheimbase1-heimdal_7.7.0+dfsg-1 libheimntlm0-heimdal_7.7.0+dfsg-1 libhogweed4_3.4.1-1 libhogweed5_3.5.1+really3.5.1-2 libhts3_1.10.2-3 libhx509-5-heimdal_7.7.0+dfsg-1 libicu65_65.1-1ubuntu1 libidn2-0_2.2.0-2 libip4tc2_1.8.4-3ubuntu1 libisl21_0.21-2 libisl22_0.22-2 libitm1_10-20200211-1ubuntu1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libjson-c4_0.13.1+dfsg-6 libk5crypto3_1.17-6ubuntu4 libkeyutils1_1.6-6ubuntu1 libkmod2_26+20191223-1ubuntu1 libkrb5-26-heimdal_7.7.0+dfsg-1 libkrb5-3_1.17-6ubuntu4 libkrb5support0_1.17-6ubuntu4 liblapack3_3.9.0-1 libldap-2.4-2_2.4.49+dfsg-1ubuntu1 libldap-common_2.4.49+dfsg-1ubuntu1 liblockfile-bin_1.16-1.1 liblockfile1_1.16-1.1 liblsan0_10-20200211-1ubuntu1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1ubuntu6 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncurses6_6.1+20191019-1ubuntu1 libncursesw6_6.1+20191019-1ubuntu1 libnettle6_3.4.1-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1 libnpth0_1.6-1 libp11-kit0_0.23.20-1build1 libpam-modules_1.3.1-5ubuntu4 libpam-modules-bin_1.3.1-5ubuntu4 libpam-runtime_1.3.1-5ubuntu4 libpam0g_1.3.1-5ubuntu4 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.28_5.28.1-6build1 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2build1 libpng16-16_1.6.37-2 libprocps7_2:3.3.15-2ubuntu3 libprocps8_2:3.3.16-1ubuntu1 libpsl5_0.20.2-2 libpython3-all-dev_3.8.0-3ubuntu1 libpython3-dev_3.8.0-3ubuntu1 libpython3-stdlib_3.8.0-3ubuntu1 libpython3.7-minimal_3.7.6-1ubuntu2 libpython3.7-stdlib_3.7.6-1ubuntu2 libpython3.8_3.8.2~rc1-1ubuntu1 libpython3.8-dev_3.8.2~rc1-1ubuntu1 libpython3.8-minimal_3.8.2~rc1-1ubuntu1 libpython3.8-stdlib_3.8.2~rc1-1ubuntu1 libquadmath0_10-20200211-1ubuntu1 libreadline8_8.0-3 libroken18-heimdal_7.7.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-2build1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.2-2ubuntu2 libselinux1_3.0-1 libsemanage-common_3.0-1 libsemanage1_3.0-1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1ubuntu6 libsqlite3-0_3.31.1-1ubuntu1 libss2_1.45.5-2ubuntu1 libssh-4_0.9.3-2ubuntu1 libssl1.1_1.1.1d-2ubuntu3 libstdc++-9-dev_9.2.1-28ubuntu1 libstdc++6_10-20200211-1ubuntu1 libsub-override-perl_0.09-2 libsystemd0_244.2-1ubuntu1 libtasn1-6_4.16.0-2 libtinfo6_6.1+20191019-1ubuntu1 libtool_2.4.6-13 libtsan0_10-20200211-1ubuntu1 libubsan1_10-20200211-1ubuntu1 libuchardet0_0.0.6-3 libudev1_244.2-1ubuntu1 libunistring2_0.9.10-2 libuuid1_2.34-0.1ubuntu6 libwind0-heimdal_7.7.0+dfsg-1 libxml2_2.9.10+dfsg-1ubuntu1 libzstd1_1.4.4+dfsg-3 linux-libc-dev_5.4.0-14.17 lockfile-progs_0.1.18 login_1:4.8.1-1ubuntu1 logsave_1.45.5-2ubuntu1 lsb-base_11.1.0ubuntu2 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17ubuntu3 mime-support_3.64ubuntu1 mount_2.34-0.1ubuntu6 ncurses-base_6.1+20191019-1ubuntu1 ncurses-bin_6.1+20191019-1ubuntu1 openssl_1.1.1d-2ubuntu3 optipng_0.7.7-1 passwd_1:4.8.1-1ubuntu1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.28_5.28.1-6build1 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkgbinarymangler_144 po-debconf_1.0.21 policyrcd-script-zg2_0.1-3 procps_2:3.3.16-1ubuntu1 python-matplotlib-data_3.1.2-1ubuntu2 python3_3.8.0-3ubuntu1 python3-all_3.8.0-3ubuntu1 python3-all-dev_3.8.0-3ubuntu1 python3-chardet_3.0.4-4build1 python3-cycler_0.10.0-3 python3-dateutil_2.7.3-3ubuntu1 python3-debian_0.1.36build1 python3-dev_3.8.0-3ubuntu1 python3-distutils_3.8.0-1 python3-kiwisolver_1.0.1-3 python3-lib2to3_3.8.0-1 python3-matplotlib_3.1.2-1ubuntu2 python3-minimal_3.8.0-3ubuntu1 python3-numpy_1:1.17.4-5ubuntu2 python3-pkg-resources_44.0.0-1 python3-pyparsing_2.4.6-1 python3-pysam_0.15.4+ds-1 python3-setuptools_44.0.0-1 python3-six_1.14.0-2 python3.7_3.7.6-1ubuntu2 python3.7-minimal_3.7.6-1ubuntu2 python3.8_3.8.2~rc1-1ubuntu1 python3.8-dev_3.8.2~rc1-1ubuntu1 python3.8-minimal_3.8.2~rc1-1ubuntu1 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htseq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_3.0.12-2.2 swig3.0_3.0.12-2.2 systemd_244.2-1ubuntu1 systemd-sysv_244.2-1ubuntu1 sysvinit-utils_2.96-2.1ubuntu1 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 ubuntu-keyring_2020.02.11.1 util-linux_2.34-0.1ubuntu6 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1ubuntu3 zlib1g-dev_1:1.2.11.dfsg-1ubuntu3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Tue Feb 18 09:14:42 2020 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htseq_0.11.2-2build1.dsc dpkg-source: info: extracting htseq in htseq-0.11.2 dpkg-source: info: unpacking htseq_0.11.2.orig.tar.gz dpkg-source: info: unpacking htseq_0.11.2-2build1.debian.tar.xz Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-18725018 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-18725018 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-18725018 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package htseq dpkg-buildpackage: info: source version 0.11.2-2build1 dpkg-buildpackage: info: source distribution focal dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean I: pybuild base:217: python3.8 setup.py clean symlinking folders for python3 running clean removing '/<>/.pybuild/cpython3_3.8_htseq/build' (and everything under it) 'build/bdist.linux-x86_64' does not exist -- can't clean it 'build/scripts-3.8' does not exist -- can't clean it # setup.py creates some symlinks in clean target # remove these links to keep source tree clean for link in 'src' 'HTSeq' 'doc' 'scripts' 'test' ; do \ if [ -L ${link} ] ; then rm ${link} ; fi \ done make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python3.8 setup.py config symlinking folders for python3 running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py build symlinking folders for python3 running build running build_py running preprocess cythonizing /bin/sh: 1: cython: not found Cython not found, but transpiled file found SWIGging correcting SWIG for python3 /bin/sh: 1: 2to3: not found SWIG not found, but transpiled files found moving swigged .py module done creating /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq copying HTSeq/__init__.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq copying HTSeq/_HTSeq_internal.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq copying HTSeq/StepVector.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq copying HTSeq/_version.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq creating /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts copying HTSeq/scripts/__init__.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts copying HTSeq/scripts/qa.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts copying HTSeq/scripts/count.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts running build_ext building 'HTSeq._HTSeq' extension creating build creating build/temp.linux-x86_64-3.8 creating build/temp.linux-x86_64-3.8/src x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.8 -c src/_HTSeq.c -o build/temp.linux-x86_64-3.8/src/_HTSeq.o -w x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/src/_HTSeq.o -o /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-x86_64-linux-gnu.so building 'HTSeq._StepVector' extension x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.8 -c src/StepVector_wrap.cxx -o build/temp.linux-x86_64-3.8/src/StepVector_wrap.o -w x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-x86_64-3.8/src/StepVector_wrap.o -o /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.8 copying and adjusting scripts/htseq-qa -> build/scripts-3.8 copying and adjusting scripts/htseq-count -> build/scripts-3.8 changing mode of build/scripts-3.8/htseq-qa from 644 to 755 changing mode of build/scripts-3.8/htseq-count from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /<>/.pybuild/cpython3_3.8_htseq/build; python3.8 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/debian/python3-htseq symlinking folders for python3 running install running build running build_py running preprocess cythonizing /bin/sh: 1: cython: not found Cython not found, but transpiled file found SWIGging correcting SWIG for python3 /bin/sh: 1: 2to3: not found SWIG not found, but transpiled files found moving swigged .py module done copying HTSeq/StepVector.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq copying HTSeq/_version.py -> /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq running build_ext running build_scripts running install_lib creating /<>/debian/python3-htseq/usr creating /<>/debian/python3-htseq/usr/lib creating /<>/debian/python3-htseq/usr/lib/python3.8 creating /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages creating /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq_internal.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq creating /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/count.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/qa.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts creating /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/scripts/__init__.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_version.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_StepVector.cpython-38-x86_64-linux-gnu.so -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/_HTSeq.cpython-38-x86_64-linux-gnu.so -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq creating /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/__init__.cpython-38.pyc -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/StepVector.cpython-38.pyc -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_HTSeq_internal.cpython-38.pyc -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__pycache__/_version.cpython-38.pyc -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__pycache__ copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/__init__.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq copying /<>/.pybuild/cpython3_3.8_htseq/build/HTSeq/StepVector.py -> /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_HTSeq_internal.py to _HTSeq_internal.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/count.py to count.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/qa.py to qa.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/scripts/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/_version.py to _version.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/__init__.py to __init__.cpython-38.pyc byte-compiling /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq/StepVector.py to StepVector.cpython-38.pyc running install_egg_info running egg_info writing HTSeq.egg-info/PKG-INFO writing dependency_links to HTSeq.egg-info/dependency_links.txt writing requirements to HTSeq.egg-info/requires.txt writing top-level names to HTSeq.egg-info/top_level.txt reading manifest file 'HTSeq.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.md' warning: no previously-included files found matching 'todo.txt' no previously-included directories found matching 'example_data' no previously-included directories found matching 'doc' no previously-included directories found matching 'test' writing manifest file 'HTSeq.egg-info/SOURCES.txt' Copying HTSeq.egg-info to /<>/debian/python3-htseq/usr/lib/python3.8/dist-packages/HTSeq-0.11.2.egg-info Skipping SOURCES.txt running install_scripts creating /<>/debian/python3-htseq/usr/bin copying build/scripts-3.8/htseq-qa -> /<>/debian/python3-htseq/usr/bin copying build/scripts-3.8/htseq-count -> /<>/debian/python3-htseq/usr/bin changing mode of /<>/debian/python3-htseq/usr/bin/htseq-qa to 755 changing mode of /<>/debian/python3-htseq/usr/bin/htseq-count to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-htseq/usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-38-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-htseq: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild INFO: pkgstriptranslations version 144 INFO: pkgstriptranslations version 144 pkgstriptranslations: processing python3-htseq (in debian/python3-htseq); do_strip: , oemstrip: pkgstriptranslations: processing python3-htseq-dbgsym (in debian/.debhelper/python3-htseq/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/python3-htseq/DEBIAN/control, package python3-htseq, directory debian/python3-htseq pkgstripfiles: processing control file: debian/.debhelper/python3-htseq/dbgsym-root/DEBIAN/control, package python3-htseq-dbgsym, directory debian/.debhelper/python3-htseq/dbgsym-root dpkg-deb: building package 'python3-htseq-dbgsym' in 'debian/.debhelper/scratch-space/build-python3-htseq/python3-htseq-dbgsym_0.11.2-2build1_amd64.deb'. pkgstripfiles: Truncating usr/share/doc/python3-htseq/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package python3-htseq ... pkgstripfiles: No PNG files. dpkg-deb: building package 'python3-htseq' in '../python3-htseq_0.11.2-2build1_amd64.deb'. Renaming python3-htseq-dbgsym_0.11.2-2build1_amd64.deb to python3-htseq-dbgsym_0.11.2-2build1_amd64.ddeb dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary -mLaunchpad Build Daemon >../htseq_0.11.2-2build1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20200218-1100 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htseq_0.11.2-2build1_amd64.changes: ----------------------------------- Format: 1.8 Date: Tue, 18 Feb 2020 09:38:06 +0100 Source: htseq Binary: python3-htseq Architecture: amd64 Version: 0.11.2-2build1 Distribution: focal-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: python3-htseq - Python3 high-throughput genome sequencing read analysis utilities Changes: htseq (0.11.2-2build1) focal; urgency=medium . * No-change rebuild to drop python3.7. Checksums-Sha1: 14c54df2b661093c12c4c15a945dd2dc4720463c 8270 htseq_0.11.2-2build1_amd64.buildinfo ed5d02b95428ab85e48cb8c031da4da355a0bbcc 1279456 python3-htseq-dbgsym_0.11.2-2build1_amd64.ddeb b366ba7dca7cfb492b14a90131339e780dab5ef3 270380 python3-htseq_0.11.2-2build1_amd64.deb Checksums-Sha256: 704268a2f01c41897abc7500b118a74e1f8ef6862a0453c35f578fbc13608386 8270 htseq_0.11.2-2build1_amd64.buildinfo 8169227c25b9b099179ba4dd8b152b0335fd601d0c2d2f57b4a9c9da26cb321a 1279456 python3-htseq-dbgsym_0.11.2-2build1_amd64.ddeb 2c4979fcae4b27d2721b19d196bdc240747483f9d704e577a825acb869fb0002 270380 python3-htseq_0.11.2-2build1_amd64.deb Files: 4e8e0e56b2697cb9fa61cb7b386951f5 8270 python optional htseq_0.11.2-2build1_amd64.buildinfo 6773414ecc2891f07820bdf437d0e102 1279456 debug optional python3-htseq-dbgsym_0.11.2-2build1_amd64.ddeb 12c94014fb0d88732c2498a20b1df19f 270380 python optional python3-htseq_0.11.2-2build1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ python3-htseq_0.11.2-2build1_amd64.deb -------------------------------------- new debian package, version 2.0. size 270380 bytes: control archive=1864 bytes. 1157 bytes, 26 lines control 1616 bytes, 19 lines md5sums 252 bytes, 12 lines * postinst #!/bin/sh 401 bytes, 12 lines * prerm #!/bin/sh Package: python3-htseq Source: htseq Version: 0.11.2-2build1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 878 Depends: python3 (<< 3.9), python3 (>= 3.8~), python3-numpy, python3-pysam, python3:any, libc6 (>= 2.14), libgcc-s1 (>= 3.0), libstdc++6 (>= 5) Breaks: python-htseq (<= 0.9.1) Provides: python-htseq Section: python Priority: optional Homepage: https://www-huber.embl.de/users/anders/HTSeq/doc/overview.html Description: Python3 high-throughput genome sequencing read analysis utilities HTSeq can be used to performing a number of common analysis tasks when working with high-throughput genome sequencing reads: . * Getting statistical summaries about the base-call quality scores to study the data quality. * Calculating a coverage vector and exporting it for visualization in a genome browser. * Reading in annotation data from a GFF file. * Assigning aligned reads from an RNA-Seq experiments to exons and genes. . This package contains the Python 3 module. drwxr-xr-x root/root 0 2020-02-18 08:38 ./ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/bin/ -rwxr-xr-x root/root 75 2020-02-18 08:38 ./usr/bin/htseq-count -rwxr-xr-x root/root 69 2020-02-18 08:38 ./usr/bin/htseq-qa drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/python3/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq-0.11.2.egg-info/ -rw-r--r-- root/root 1006 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq-0.11.2.egg-info/PKG-INFO -rw-r--r-- root/root 1 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq-0.11.2.egg-info/dependency_links.txt -rw-r--r-- root/root 28 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq-0.11.2.egg-info/requires.txt -rw-r--r-- root/root 6 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq-0.11.2.egg-info/top_level.txt drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/ -rw-r--r-- root/root 28266 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/StepVector.py -rw-r--r-- root/root 641560 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq.cpython-38-x86_64-linux-gnu.so -rw-r--r-- root/root 1416 2019-01-08 02:36 ./usr/lib/python3/dist-packages/HTSeq/_HTSeq_internal.py -rw-r--r-- root/root 115024 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/_StepVector.cpython-38-x86_64-linux-gnu.so -rw-r--r-- root/root 44528 2019-01-08 02:36 ./usr/lib/python3/dist-packages/HTSeq/__init__.py -rw-r--r-- root/root 22 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/_version.py drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/lib/python3/dist-packages/HTSeq/scripts/ -rw-r--r-- root/root 0 2019-01-08 02:36 ./usr/lib/python3/dist-packages/HTSeq/scripts/__init__.py -rw-r--r-- root/root 20087 2019-01-08 02:36 ./usr/lib/python3/dist-packages/HTSeq/scripts/count.py -rw-r--r-- root/root 8342 2019-01-08 02:36 ./usr/lib/python3/dist-packages/HTSeq/scripts/qa.py drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/share/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/share/doc/python3-htseq/ -rw-r--r-- root/root 1442 2020-02-18 08:38 ./usr/share/doc/python3-htseq/changelog.Debian.gz -rw-r--r-- root/root 959 2019-10-08 14:53 ./usr/share/doc/python3-htseq/copyright drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/share/man/ drwxr-xr-x root/root 0 2020-02-18 08:38 ./usr/share/man/man1/ -rw-r--r-- root/root 5662 2020-02-18 08:38 ./usr/share/man/man1/htseq-count.1.gz -rw-r--r-- root/root 1994 2020-02-18 08:38 ./usr/share/man/man1/htseq-qa.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 32176 Build-Time: 29 Distribution: focal-proposed Host Architecture: amd64 Install-Time: 25 Job: htseq_0.11.2-2build1.dsc Machine Architecture: amd64 Package: htseq Package-Time: 54 Source-Version: 0.11.2-2build1 Space: 32176 Status: successful Version: 0.11.2-2build1 -------------------------------------------------------------------------------- Finished at 20200218-1100 Build needed 00:00:54, 32176k disc space RUN: /usr/share/launchpad-buildd/bin/in-target scan-for-processes --backend=chroot --series=focal --arch=amd64 PACKAGEBUILD-18725018 Scanning for processes to kill in build PACKAGEBUILD-18725018