RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lgw01-13 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:17:06 UTC 2017 x86_64 Buildd toolchain package versions: launchpad-buildd_144 python-lpbuildd_144 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.1 dpkg-dev_1.18.4ubuntu1.2 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.14. Syncing the system clock with the buildd NTP service... 23 Jun 16:14:55 ntpdate[1805]: adjust time server 10.211.37.1 offset 0.002052 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-12795295', '/home/buildd/filecache-default/7fe38ae672de2c40a7e6ba74a0e6690544a5bb48'] Unpacking chroot for build PACKAGEBUILD-12795295 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-12795295'] Mounting chroot for build PACKAGEBUILD-12795295 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-12795295', 'deb http://ftpmaster.internal/ubuntu artful main universe', 'deb http://ftpmaster.internal/ubuntu artful-security main universe', 'deb http://ftpmaster.internal/ubuntu artful-updates main universe', 'deb http://ftpmaster.internal/ubuntu artful-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-12795295 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-12795295', 'i386'] Updating debian chroot for build PACKAGEBUILD-12795295 Get:1 http://ftpmaster.internal/ubuntu artful InRelease [237 kB] Get:2 http://ftpmaster.internal/ubuntu artful-security InRelease [65.5 kB] Get:3 http://ftpmaster.internal/ubuntu artful-updates InRelease [65.5 kB] Get:4 http://ftpmaster.internal/ubuntu artful-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 Packages [1166 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main Translation-en [565 kB] Get:7 http://ftpmaster.internal/ubuntu artful/universe i386 Packages [8230 kB] Get:8 http://ftpmaster.internal/ubuntu artful/universe Translation-en [4755 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main i386 Packages [82.4 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main Translation-en [47.0 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/universe i386 Packages [472 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/universe Translation-en [240 kB] Fetched 16.2 MB in 5s (2797 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following NEW packages will be installed: gcc-7-base The following packages will be upgraded: advancecomp apt apt-transport-https bash binutils bsdutils ca-certificates cpp-6 debianutils dmsetup dpkg dpkg-dev g++-6 gcc-6 gcc-6-base init init-system-helpers libapparmor1 libapt-pkg5.0 libasan3 libasn1-8-heimdal libatomic1 libaudit-common libaudit1 libblkid1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libdpkg-perl libfdisk1 libgcc-6-dev libgcc1 libgcrypt20 libgnutls30 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libip4tc0 libitm1 libkmod2 libkrb5-26-heimdal libldap-2.4-2 libldap-common libmount1 libmpx2 libperl5.24 libpng16-16 libquadmath0 libroken18-heimdal libselinux1 libsemanage-common libsemanage1 libsmartcols1 libsqlite3-0 libssl1.0.0 libstdc++-6-dev libstdc++6 libsystemd0 libtasn1-6 libubsan0 libudev1 libusb-0.1-4 libuuid1 libwind0-heimdal linux-libc-dev login mount openssl passwd perl perl-base perl-modules-5.24 systemd systemd-sysv tzdata util-linux 79 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 53.8 MB of archives. After this operation, 1638 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu artful/main i386 debianutils i386 4.8.1.1 [85.7 kB] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 bash i386 4.4-5ubuntu1 [622 kB] Get:3 http://ftpmaster.internal/ubuntu artful/main i386 bsdutils i386 1:2.29-1ubuntu3 [57.9 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 dpkg i386 1.18.24ubuntu1 [1164 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 login i386 1:4.2-3.2ubuntu2 [306 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 util-linux i386 2.29-1ubuntu3 [952 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 mount i386 2.29-1ubuntu3 [137 kB] Get:8 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libperl5.24 i386 5.24.1-4ubuntu1 [3090 kB] Get:9 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl i386 5.24.1-4ubuntu1 [219 kB] Get:10 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl-base i386 5.24.1-4ubuntu1 [1440 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main i386 perl-modules-5.24 all 5.24.1-4ubuntu1 [2663 kB] Get:12 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init-system-helpers all 1.48 [37.8 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 gcc-7-base i386 7.1.0-7ubuntu1 [18.5 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 libgcc1 i386 1:7.1.0-7ubuntu1 [47.0 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main i386 libstdc++6 i386 7.1.0-7ubuntu1 [436 kB] Get:16 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libapt-pkg5.0 i386 1.4.6 [854 kB] Get:17 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt i386 1.4.6 [1130 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main i386 libip4tc0 i386 1.6.0+snapshot20161117-6ubuntu1 [20.3 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main i386 libapparmor1 i386 2.11.0-2ubuntu8 [31.2 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libaudit-common all 1:2.6.6-1ubuntu2 [4626 B] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 libaudit1 i386 1:2.6.6-1ubuntu2 [38.7 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main i386 libselinux1 i386 2.6-3build1 [73.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage-common all 2.6-2build1 [6738 B] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 libsemanage1 i386 2.6-2build1 [89.9 kB] Get:25 http://ftpmaster.internal/ubuntu artful/main i386 passwd i386 1:4.2-3.2ubuntu2 [790 kB] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 libuuid1 i386 2.29-1ubuntu3 [15.8 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main i386 libblkid1 i386 2.29-1ubuntu3 [125 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 libgcrypt20 i386 1.7.7-2 [373 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 libkmod2 i386 24-1ubuntu1 [46.0 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 libmount1 i386 2.29-1ubuntu3 [131 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main i386 systemd i386 233-8ubuntu1 [2489 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main i386 libsystemd0 i386 233-8ubuntu1 [227 kB] Get:33 http://ftpmaster.internal/ubuntu artful-proposed/main i386 init i386 1.48 [5806 B] Get:34 http://ftpmaster.internal/ubuntu artful/main i386 systemd-sysv i386 233-8ubuntu1 [12.7 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main i386 libfdisk1 i386 2.29-1ubuntu3 [160 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main i386 libsmartcols1 i386 2.29-1ubuntu3 [76.1 kB] Get:37 http://ftpmaster.internal/ubuntu artful/main i386 libudev1 i386 233-8ubuntu1 [59.9 kB] Get:38 http://ftpmaster.internal/ubuntu artful/main i386 libdevmapper1.02.1 i386 2:1.02.137-2ubuntu2 [146 kB] Get:39 http://ftpmaster.internal/ubuntu artful/main i386 dmsetup i386 2:1.02.137-2ubuntu2 [72.9 kB] Get:40 http://ftpmaster.internal/ubuntu artful/main i386 libroken18-heimdal i386 7.1.0+dfsg-13 [44.4 kB] Get:41 http://ftpmaster.internal/ubuntu artful/main i386 libasn1-8-heimdal i386 7.1.0+dfsg-13 [187 kB] Get:42 http://ftpmaster.internal/ubuntu artful/main i386 libtasn1-6 i386 4.12-2 [38.6 kB] Get:43 http://ftpmaster.internal/ubuntu artful/main i386 libgnutls30 i386 3.5.8-6ubuntu1 [692 kB] Get:44 http://ftpmaster.internal/ubuntu artful/main i386 libheimbase1-heimdal i386 7.1.0+dfsg-13 [31.9 kB] Get:45 http://ftpmaster.internal/ubuntu artful/main i386 libhcrypto4-heimdal i386 7.1.0+dfsg-13 [93.4 kB] Get:46 http://ftpmaster.internal/ubuntu artful/main i386 libwind0-heimdal i386 7.1.0+dfsg-13 [48.6 kB] Get:47 http://ftpmaster.internal/ubuntu artful/main i386 libhx509-5-heimdal i386 7.1.0+dfsg-13 [118 kB] Get:48 http://ftpmaster.internal/ubuntu artful/main i386 libsqlite3-0 i386 3.16.2-5 [519 kB] Get:49 http://ftpmaster.internal/ubuntu artful/main i386 libkrb5-26-heimdal i386 7.1.0+dfsg-13 [232 kB] Get:50 http://ftpmaster.internal/ubuntu artful/main i386 libheimntlm0-heimdal i386 7.1.0+dfsg-13 [16.6 kB] Get:51 http://ftpmaster.internal/ubuntu artful/main i386 libgssapi3-heimdal i386 7.1.0+dfsg-13 [108 kB] Get:52 http://ftpmaster.internal/ubuntu artful/main i386 libldap-2.4-2 i386 2.4.44+dfsg-5ubuntu1 [168 kB] Get:53 http://ftpmaster.internal/ubuntu artful/main i386 libldap-common all 2.4.44+dfsg-5ubuntu1 [17.5 kB] Get:54 http://ftpmaster.internal/ubuntu artful/main i386 libssl1.0.0 i386 1.0.2g-1ubuntu13 [910 kB] Get:55 http://ftpmaster.internal/ubuntu artful/main i386 tzdata all 2017b-2 [203 kB] Get:56 http://ftpmaster.internal/ubuntu artful-proposed/main i386 apt-transport-https i386 1.4.6 [38.0 kB] Get:57 http://ftpmaster.internal/ubuntu artful/main i386 openssl i386 1.0.2g-1ubuntu13 [506 kB] Get:58 http://ftpmaster.internal/ubuntu artful/main i386 ca-certificates all 20161130+nmu1 [186 kB] Get:59 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libpng16-16 i386 1.6.29-3 [181 kB] Get:60 http://ftpmaster.internal/ubuntu artful/main i386 advancecomp i386 2.0-1 [206 kB] Get:61 http://ftpmaster.internal/ubuntu artful/main i386 binutils i386 2.28-6ubuntu1 [2650 kB] Get:62 http://ftpmaster.internal/ubuntu artful/main i386 libquadmath0 i386 7.1.0-7ubuntu1 [205 kB] Get:63 http://ftpmaster.internal/ubuntu artful/main i386 libitm1 i386 7.1.0-7ubuntu1 [30.3 kB] Get:64 http://ftpmaster.internal/ubuntu artful/main i386 libmpx2 i386 7.1.0-7ubuntu1 [13.0 kB] Get:65 http://ftpmaster.internal/ubuntu artful/main i386 libubsan0 i386 7.1.0-7ubuntu1 [134 kB] Get:66 http://ftpmaster.internal/ubuntu artful/main i386 libcilkrts5 i386 7.1.0-7ubuntu1 [47.4 kB] Get:67 http://ftpmaster.internal/ubuntu artful/main i386 libgomp1 i386 7.1.0-7ubuntu1 [80.3 kB] Get:68 http://ftpmaster.internal/ubuntu artful/main i386 libatomic1 i386 7.1.0-7ubuntu1 [9690 B] Get:69 http://ftpmaster.internal/ubuntu artful/main i386 libasan3 i386 6.3.0-19ubuntu1 [308 kB] Get:70 http://ftpmaster.internal/ubuntu artful/main i386 g++-6 i386 6.3.0-19ubuntu1 [7641 kB] Get:71 http://ftpmaster.internal/ubuntu artful/main i386 libstdc++-6-dev i386 6.3.0-19ubuntu1 [1454 kB] Get:72 http://ftpmaster.internal/ubuntu artful/main i386 gcc-6 i386 6.3.0-19ubuntu1 [7460 kB] Get:73 http://ftpmaster.internal/ubuntu artful/main i386 libgcc-6-dev i386 6.3.0-19ubuntu1 [2330 kB] Get:74 http://ftpmaster.internal/ubuntu artful/main i386 libcc1-0 i386 7.1.0-7ubuntu1 [41.4 kB] Get:75 http://ftpmaster.internal/ubuntu artful/main i386 cpp-6 i386 6.3.0-19ubuntu1 [6842 kB] Get:76 http://ftpmaster.internal/ubuntu artful/main i386 gcc-6-base i386 6.3.0-19ubuntu1 [17.4 kB] Get:77 http://ftpmaster.internal/ubuntu artful/main i386 dpkg-dev all 1.18.24ubuntu1 [608 kB] Get:78 http://ftpmaster.internal/ubuntu artful/main i386 libdpkg-perl all 1.18.24ubuntu1 [209 kB] Get:79 http://ftpmaster.internal/ubuntu artful/main i386 libusb-0.1-4 i386 2:0.1.12-31 [17.7 kB] Get:80 http://ftpmaster.internal/ubuntu artful-proposed/main i386 linux-libc-dev i386 4.11.0-8.13 [924 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 53.8 MB in 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Setting up systemd (233-8ubuntu1) ... Installing new version of config file /etc/systemd/resolved.conf ... addgroup: The group `systemd-journal' already exists as a system group. Exiting. Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.hostname1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.locale1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.login1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.network1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.resolve1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.systemd1.conf ... Removing obsolete conffile /etc/dbus-1/system.d/org.freedesktop.timedate1.conf ... (Reading database ... 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Setting up libpng16-16:i386 (1.6.29-3) ... Setting up libldap-common (2.4.44+dfsg-5ubuntu1) ... Setting up libcilkrts5:i386 (7.1.0-7ubuntu1) ... Setting up tzdata (2017b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Jun 23 16:15:31 UTC 2017. Universal Time is now: Fri Jun 23 16:15:31 UTC 2017. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up systemd-sysv (233-8ubuntu1) ... Setting up libubsan0:i386 (7.1.0-7ubuntu1) ... Setting up gcc-6-base:i386 (6.3.0-19ubuntu1) ... Setting up linux-libc-dev:i386 (4.11.0-8.13) ... Setting up advancecomp (2.0-1) ... Setting up libroken18-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libdevmapper1.02.1:i386 (2:1.02.137-2ubuntu2) ... Setting up libtasn1-6:i386 (4.12-2) ... Setting up perl (5.24.1-4ubuntu1) ... Setting up libmpx2:i386 (7.1.0-7ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up libheimbase1-heimdal:i386 (7.1.0+dfsg-13) ... Setting up openssl (1.0.2g-1ubuntu13) ... Setting up libsqlite3-0:i386 (3.16.2-5) ... Setting up dmsetup (2:1.02.137-2ubuntu2) ... Setting up binutils (2.28-6ubuntu1) ... Setting up cpp-6 (6.3.0-19ubuntu1) ... Setting up ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 7 removed; done. Setting up libusb-0.1-4:i386 (2:0.1.12-31) ... Setting up libitm1:i386 (7.1.0-7ubuntu1) ... Setting up libasan3:i386 (6.3.0-19ubuntu1) ... Setting up libgcc-6-dev:i386 (6.3.0-19ubuntu1) ... Setting up libstdc++-6-dev:i386 (6.3.0-19ubuntu1) ... Setting up libwind0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up init (1.48) ... Setting up libasn1-8-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libhcrypto4-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libgnutls30:i386 (3.5.8-6ubuntu1) ... Setting up libdpkg-perl (1.18.24ubuntu1) ... Setting up libhx509-5-heimdal:i386 (7.1.0+dfsg-13) ... Setting up gcc-6 (6.3.0-19ubuntu1) ... Setting up g++-6 (6.3.0-19ubuntu1) ... Setting up dpkg-dev (1.18.24ubuntu1) ... Setting up libkrb5-26-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libheimntlm0-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libgssapi3-heimdal:i386 (7.1.0+dfsg-13) ... Setting up libldap-2.4-2:i386 (2.4.44+dfsg-5ubuntu1) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Processing triggers for ca-certificates (20161130+nmu1) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-12795295', 'i386', 'artful-proposed', '-c', 'chroot:autobuild', '--arch=i386', '--dist=artful-proposed', '--purge=never', '--nolog', 'htslib_1.4.1-2ubuntu1.dsc'] Initiating build PACKAGEBUILD-12795295 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-81-generic #104-Ubuntu SMP Wed Jun 14 08:17:06 UTC 2017 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-13.buildd +==============================================================================+ | htslib 1.4.1-2ubuntu1 (i386) 23 Jun 2017 16:15 | +==============================================================================+ Package: htslib Version: 1.4.1-2ubuntu1 Source Version: 1.4.1-2ubuntu1 Distribution: artful-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/htslib-zOlQVS/htslib-1.4.1' with '<>' I: NOTICE: Log filtering will replace 'build/htslib-zOlQVS' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-12795295/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- htslib_1.4.1-2ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-mNaETE/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-mNaETE/apt_archive ./ InRelease Get:2 copy:/<>/resolver-mNaETE/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-mNaETE/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-mNaETE/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-mNaETE/apt_archive ./ Packages [526 B] Fetched 2859 B in 0s (201 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 778 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-mNaETE/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [778 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 778 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12503 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 10), dh-exec, libcurl4-gnutls-dev, libssl-dev, zlib1g-dev, libbz2-dev, liblzma-dev Filtered Build-Depends: debhelper (>= 10), dh-exec, libcurl4-gnutls-dev, libssl-dev, zlib1g-dev, libbz2-dev, liblzma-dev dpkg-deb: building package 'sbuild-build-depends-htslib-dummy' in '/<>/resolver-UmbCI1/apt_archive/sbuild-build-depends-htslib-dummy.deb'. Ign:1 copy:/<>/resolver-UmbCI1/apt_archive ./ InRelease Get:2 copy:/<>/resolver-UmbCI1/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-UmbCI1/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-UmbCI1/apt_archive ./ Sources [250 B] Get:5 copy:/<>/resolver-UmbCI1/apt_archive ./ Packages [565 B] Fetched 2934 B in 0s (173 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install htslib build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 liblzma-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libssl-dev libtimedate-perl libtool libxml2 m4 man-db po-debconf zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev pkg-config liblzma-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser libmail-box-perl Recommended packages: curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info xdg-user-dirs libssl-doc libltdl-dev xml-core libmail-sendmail-perl The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-exec dh-strip-nondeterminism file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libbz2-dev libcroco3 libcurl4-gnutls-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57 liblzma-dev libmagic-mgc libmagic1 libpipeline1 libsigsegv2 libssl-dev libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-htslib-dummy zlib1g-dev 0 upgraded, 36 newly installed, 1 to remove and 0 not upgraded. Need to get 18.4 MB of archives. After this operation, 70.1 MB of additional disk space will be used. Get:1 copy:/<>/resolver-UmbCI1/apt_archive ./ sbuild-build-depends-htslib-dummy 0.invalid.0 [820 B] Get:2 http://ftpmaster.internal/ubuntu artful/main i386 groff-base i386 1.22.3-9 [1163 kB] Get:3 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libbsd0 i386 0.8.4-1 [44.9 kB] Get:4 http://ftpmaster.internal/ubuntu artful/main i386 bsdmainutils i386 9.0.12ubuntu1 [175 kB] Get:5 http://ftpmaster.internal/ubuntu artful/main i386 libpipeline1 i386 1.4.1-2 [26.5 kB] Get:6 http://ftpmaster.internal/ubuntu artful/main i386 man-db i386 2.7.6.1-2 [906 kB] Get:7 http://ftpmaster.internal/ubuntu artful/main i386 libmagic-mgc i386 1:5.30-1 [181 kB] Get:8 http://ftpmaster.internal/ubuntu artful/main i386 libmagic1 i386 1:5.30-1 [74.3 kB] Get:9 http://ftpmaster.internal/ubuntu artful/main i386 file i386 1:5.30-1 [21.7 kB] Get:10 http://ftpmaster.internal/ubuntu artful/main i386 gettext-base i386 0.19.8.1-2ubuntu1 [48.9 kB] Get:11 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libglib2.0-0 i386 2.53.2-1 [1221 kB] Get:12 http://ftpmaster.internal/ubuntu artful/main i386 libicu57 i386 57.1-6 [7837 kB] Get:13 http://ftpmaster.internal/ubuntu artful/main i386 libxml2 i386 2.9.4+dfsg1-2.2ubuntu1 [733 kB] Get:14 http://ftpmaster.internal/ubuntu artful/main i386 libsigsegv2 i386 2.10-5 [14.3 kB] Get:15 http://ftpmaster.internal/ubuntu artful/main i386 m4 i386 1.4.18-1 [196 kB] Get:16 http://ftpmaster.internal/ubuntu artful/main i386 autoconf all 2.69-10 [321 kB] Get:17 http://ftpmaster.internal/ubuntu artful/main i386 autotools-dev all 20161112.1 [39.5 kB] Get:18 http://ftpmaster.internal/ubuntu artful/main i386 automake all 1:1.15-6ubuntu1 [509 kB] Get:19 http://ftpmaster.internal/ubuntu artful/main i386 autopoint all 0.19.8.1-2ubuntu1 [411 kB] Get:20 http://ftpmaster.internal/ubuntu artful/main i386 libtool all 2.4.6-2 [194 kB] Get:21 http://ftpmaster.internal/ubuntu artful/main i386 dh-autoreconf all 14 [15.5 kB] Get:22 http://ftpmaster.internal/ubuntu artful/main i386 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:23 http://ftpmaster.internal/ubuntu artful-proposed/main i386 libfile-stripnondeterminism-perl all 0.035-1 [13.2 kB] Get:24 http://ftpmaster.internal/ubuntu artful/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:25 http://ftpmaster.internal/ubuntu artful-proposed/main i386 dh-strip-nondeterminism all 0.035-1 [5016 B] Get:26 http://ftpmaster.internal/ubuntu artful/main i386 libcroco3 i386 0.6.11-3 [87.2 kB] Get:27 http://ftpmaster.internal/ubuntu artful/main i386 gettext i386 0.19.8.1-2ubuntu1 [1088 kB] Get:28 http://ftpmaster.internal/ubuntu artful/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:29 http://ftpmaster.internal/ubuntu artful/main i386 po-debconf all 1.0.20 [232 kB] Get:30 http://ftpmaster.internal/ubuntu artful/main i386 debhelper all 10.4ubuntu3 [876 kB] Get:31 http://ftpmaster.internal/ubuntu artful/main i386 libbz2-dev i386 1.0.6-8.1 [28.6 kB] Get:32 http://ftpmaster.internal/ubuntu artful/main i386 libcurl4-gnutls-dev i386 7.52.1-5ubuntu1 [299 kB] Get:33 http://ftpmaster.internal/ubuntu artful/main i386 zlib1g-dev i386 1:1.2.11.dfsg-0ubuntu1 [171 kB] Get:34 http://ftpmaster.internal/ubuntu artful/main i386 libssl-dev i386 1.0.2g-1ubuntu13 [1129 kB] Get:35 http://ftpmaster.internal/ubuntu artful/main i386 dh-exec i386 0.23build1 [24.7 kB] Get:36 http://ftpmaster.internal/ubuntu artful/main i386 liblzma-dev i386 5.2.2-1.2 [149 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.4 MB in 1s (11.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12503 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package groff-base. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12494 files and directories currently installed.) Preparing to unpack .../00-groff-base_1.22.3-9_i386.deb ... Unpacking groff-base (1.22.3-9) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../01-libbsd0_0.8.4-1_i386.deb ... Unpacking libbsd0:i386 (0.8.4-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../02-bsdmainutils_9.0.12ubuntu1_i386.deb ... Unpacking bsdmainutils (9.0.12ubuntu1) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.4.1-2_i386.deb ... Unpacking libpipeline1:i386 (1.4.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.7.6.1-2_i386.deb ... Unpacking man-db (2.7.6.1-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.30-1_i386.deb ... Unpacking libmagic-mgc (1:5.30-1) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../06-libmagic1_1%3a5.30-1_i386.deb ... Unpacking libmagic1:i386 (1:5.30-1) ... Selecting previously unselected package file. Preparing to unpack .../07-file_1%3a5.30-1_i386.deb ... Unpacking file (1:5.30-1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../08-gettext-base_0.19.8.1-2ubuntu1_i386.deb ... Unpacking gettext-base (0.19.8.1-2ubuntu1) ... Selecting previously unselected package libglib2.0-0:i386. Preparing to unpack .../09-libglib2.0-0_2.53.2-1_i386.deb ... Unpacking libglib2.0-0:i386 (2.53.2-1) ... Selecting previously unselected package libicu57:i386. Preparing to unpack .../10-libicu57_57.1-6_i386.deb ... Unpacking libicu57:i386 (57.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../11-libxml2_2.9.4+dfsg1-2.2ubuntu1_i386.deb ... Unpacking libxml2:i386 (2.9.4+dfsg1-2.2ubuntu1) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../12-libsigsegv2_2.10-5_i386.deb ... Unpacking libsigsegv2:i386 (2.10-5) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.18-1_i386.deb ... Unpacking m4 (1.4.18-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.69-10_all.deb ... Unpacking autoconf (2.69-10) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20161112.1_all.deb ... 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Unpacking libfile-stripnondeterminism-perl (0.035-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../22-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_0.035-1_all.deb ... Unpacking dh-strip-nondeterminism (0.035-1) ... Selecting previously unselected package libcroco3:i386. Preparing to unpack .../24-libcroco3_0.6.11-3_i386.deb ... Unpacking libcroco3:i386 (0.6.11-3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-2ubuntu1_i386.deb ... Unpacking gettext (0.19.8.1-2ubuntu1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.4_all.deb ... Unpacking intltool-debian (0.35.0+20060710.4) ... Selecting previously unselected package po-debconf. 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Setting up libbsd0:i386 (0.8.4-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-2.2ubuntu1) ... Setting up libmagic-mgc (1:5.30-1) ... Setting up libmagic1:i386 (1:5.30-1) ... Setting up libcroco3:i386 (0.6.11-3) ... Processing triggers for libc-bin (2.24-9ubuntu2) ... Setting up autotools-dev (20161112.1) ... Setting up liblzma-dev:i386 (5.2.2-1.2) ... Setting up bsdmainutils (9.0.12ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcurl4-gnutls-dev:i386 (7.52.1-5ubuntu1) ... Setting up autopoint (0.19.8.1-2ubuntu1) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-0ubuntu1) ... Setting up libfile-stripnondeterminism-perl (0.035-1) ... Setting up gettext (0.19.8.1-2ubuntu1) ... Setting up libssl-dev:i386 (1.0.2g-1ubuntu13) ... Setting up autoconf (2.69-10) ... Setting up file (1:5.30-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15-6ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.7.6.1-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (14) ... Setting up dh-strip-nondeterminism (0.035-1) ... Setting up debhelper (10.4ubuntu3) ... Setting up dh-exec (0.23build1) ... Setting up sbuild-build-depends-htslib-dummy (0.invalid.0) ... (Reading database ... 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Processing triggers for libc-bin (2.24-9ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-81-generic amd64 (i686) Toolchain package versions: binutils_2.28-6ubuntu1 dpkg-dev_1.18.24ubuntu1 g++-6_6.3.0-19ubuntu1 gcc-6_6.3.0-19ubuntu1 libc6-dev_2.24-9ubuntu2 libstdc++-6-dev_6.3.0-19ubuntu1 libstdc++6_7.1.0-7ubuntu1 linux-libc-dev_4.11.0-8.13 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_2.0-1 apt_1.4.6 apt-transport-https_1.4.6 autoconf_2.69-10 automake_1:1.15-6ubuntu1 autopoint_0.19.8.1-2ubuntu1 autotools-dev_20161112.1 base-files_9.6ubuntu99 base-passwd_3.5.43 bash_4.4-5ubuntu1 binutils_2.28-6ubuntu1 bsdmainutils_9.0.12ubuntu1 bsdutils_1:2.29-1ubuntu3 build-essential_12.1ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3ubuntu3 cpp_4:6.3.0-2ubuntu1 cpp-6_6.3.0-19ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.60ubuntu1 debhelper_10.4ubuntu3 debianutils_4.8.1.1 dh-autoreconf_14 dh-exec_0.23build1 dh-strip-nondeterminism_0.035-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2ubuntu2 dpkg_1.18.24ubuntu1 dpkg-dev_1.18.24ubuntu1 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-1ubuntu2 file_1:5.30-1 findutils_4.6.0+git+20161106-2 g++_4:6.3.0-2ubuntu1 g++-6_6.3.0-19ubuntu1 gcc_4:6.3.0-2ubuntu1 gcc-6_6.3.0-19ubuntu1 gcc-6-base_6.3.0-19ubuntu1 gcc-7-base_7.1.0-7ubuntu1 gettext_0.19.8.1-2ubuntu1 gettext-base_0.19.8.1-2ubuntu1 gnupg_2.1.15-1ubuntu7 gnupg-agent_2.1.15-1ubuntu7 gpgv_2.1.15-1ubuntu7 grep_2.27-2 groff-base_1.22.3-9 gzip_1.6-5ubuntu1 hostname_3.18 init_1.48 init-system-helpers_1.48 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.11.0-2ubuntu8 libapt-pkg5.0_1.4.6 libarchive-zip-perl_1.59-1 libasan3_6.3.0-19ubuntu1 libasn1-8-heimdal_7.1.0+dfsg-13 libassuan0_2.4.3-2 libatomic1_7.1.0-7ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.6.6-1ubuntu2 libaudit1_1:2.6.6-1ubuntu2 libblkid1_2.29-1ubuntu3 libbsd0_0.8.4-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.24-9ubuntu2 libc-dev-bin_2.24-9ubuntu2 libc6_2.24-9ubuntu2 libc6-dev_2.24-9ubuntu2 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-7ubuntu1 libcilkrts5_7.1.0-7ubuntu1 libcomerr2_1.43.4-2 libcroco3_0.6.11-3 libcryptsetup4_2:1.7.2-0ubuntu1 libcurl3-gnutls_7.52.1-5ubuntu1 libcurl4-gnutls-dev_7.52.1-5ubuntu1 libdb5.3_5.3.28-12 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.137-2ubuntu2 libdpkg-perl_1.18.24ubuntu1 libfakeroot_1.21-1ubuntu2 libfdisk1_2.29-1ubuntu3 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.035-1 libgcc-6-dev_6.3.0-19ubuntu1 libgcc1_1:7.1.0-7ubuntu1 libgcrypt20_1.7.7-2 libgdbm3_1.8.3-14 libglib2.0-0_2.53.2-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.8-6ubuntu1 libgomp1_7.1.0-7ubuntu1 libgpg-error0_1.26-2 libgssapi-krb5-2_1.15-2 libgssapi3-heimdal_7.1.0+dfsg-13 libhcrypto4-heimdal_7.1.0+dfsg-13 libheimbase1-heimdal_7.1.0+dfsg-13 libheimntlm0-heimdal_7.1.0+dfsg-13 libhogweed4_3.3-1 libhx509-5-heimdal_7.1.0+dfsg-13 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_0.16-1 libip4tc0_1.6.0+snapshot20161117-6ubuntu1 libisl15_0.18-1 libitm1_7.1.0-7ubuntu1 libk5crypto3_1.15-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_24-1ubuntu1 libkrb5-26-heimdal_7.1.0+dfsg-13 libkrb5-3_1.15-2 libkrb5support0_1.15-2 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-5ubuntu1 libldap-common_2.4.44+dfsg-5ubuntu1 liblockfile-bin_1.14-1 liblockfile1_1.14-1 liblz4-1_0.0~r131-2ubuntu2 liblzma-dev_5.2.2-1.2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmount1_2.29-1ubuntu3 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libmpx2_7.1.0-7ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.3-1 libnpth0_1.3-1 libp11-kit0_0.23.3-5 libpam-modules_1.1.8-3.2ubuntu3 libpam-modules-bin_1.1.8-3.2ubuntu3 libpam-runtime_1.1.8-3.2ubuntu3 libpam0g_1.1.8-3.2ubuntu3 libpcre3_2:8.39-3 libperl5.24_5.24.1-4ubuntu1 libpipeline1_1.4.1-2 libpng16-16_1.6.29-3 libprocps6_2:3.3.12-1ubuntu2 libpsl5_0.17.0-4 libquadmath0_7.1.0-7ubuntu1 libreadline7_7.0-0ubuntu2 libroken18-heimdal_7.1.0+dfsg-13 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-2ubuntu1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-2ubuntu1 libseccomp2_2.3.1-2.1ubuntu1 libselinux1_2.6-3build1 libsemanage-common_2.6-2build1 libsemanage1_2.6-2build1 libsepol1_2.6-2 libsigsegv2_2.10-5 libslang2_2.3.1-5ubuntu1 libsmartcols1_2.29-1ubuntu3 libsqlite3-0_3.16.2-5 libss2_1.43.4-2 libssl-dev_1.0.2g-1ubuntu13 libssl1.0.0_1.0.2g-1ubuntu13 libstdc++-6-dev_6.3.0-19ubuntu1 libstdc++6_7.1.0-7ubuntu1 libsystemd0_233-8ubuntu1 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-2 libubsan0_7.1.0-7ubuntu1 libudev1_233-8ubuntu1 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1ubuntu3 libwind0-heimdal_7.1.0+dfsg-13 libxml2_2.9.4+dfsg1-2.2ubuntu1 linux-libc-dev_4.11.0-8.13 lockfile-progs_0.1.17build1 login_1:4.2-3.2ubuntu2 lsb-base_9.20160110ubuntu5 m4_1.4.18-1 make_4.1-9.1 man-db_2.7.6.1-2 mawk_1.3.3-17ubuntu2 mount_2.29-1ubuntu3 multiarch-support_2.24-9ubuntu2 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 openssl_1.0.2g-1ubuntu13 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu2 patch_2.7.5-1build1 perl_5.24.1-4ubuntu1 perl-base_5.24.1-4ubuntu1 perl-modules-5.24_5.24.1-4ubuntu1 pinentry-curses_1.0.0-2 pkgbinarymangler_131 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-htslib-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9 systemd_233-8ubuntu1 systemd-sysv_233-8ubuntu1 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1.1 tzdata_2017b-2 ubuntu-keyring_2016.10.27 util-linux_2.29-1ubuntu3 xz-utils_5.2.2-1.2 zlib1g_1:1.2.11.dfsg-0ubuntu1 zlib1g-dev_1:1.2.11.dfsg-0ubuntu1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Jun 23 16:12:45 2017 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./htslib_1.4.1-2ubuntu1.dsc dpkg-source: info: extracting htslib in htslib-1.4.1 dpkg-source: info: unpacking htslib_1.4.1.orig.tar.gz dpkg-source: info: unpacking htslib_1.4.1-2ubuntu1.debian.tar.xz dpkg-source: info: applying define_PATH_MAX.patch dpkg-source: info: applying literal_version.patch dpkg-source: info: applying fix_pkg-config.patch dpkg-source: info: applying htslib-add-cram_to_bam.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<> SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package htslib dpkg-buildpackage: info: source version 1.4.1-2ubuntu1 dpkg-buildpackage: info: source distribution artful dpkg-source --before-build htslib-1.4.1 dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from htslib-1.4.1/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md)$ fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j4 distclean make[1]: Entering directory '/<>' rm -f test/*.tmp test/*.tmp.* test/tabix/*.tmp.* test/tabix/FAIL* rm -f libhts.so libhts.so.* rm -f *.o *.pico cram/*.o cram/*.pico test/*.o test/*.dSYM version.h rm -f libhts.a bgzip htsfile tabix test/hts_endian test/fieldarith test/hfile test/sam test/test_bgzf test/test-regidx test/test_view test/test-vcf-api test/test-vcf-sweep test/test-bcf-sr test/thrash_threads1 test/thrash_threads2 test/thrash_threads3 test/thrash_threads4 test/thrash_threads5 test/thrash_threads6 rm -f config.cache config.h config.log config.mk config.status rm -f TAGS *.pc.tmp *-uninstalled.pc htslib_static.mk make[1]: Leaving directory '/<>' dh_autoreconf_clean dh_clean rm -f debian/debhelper-build-stamp rm -f debian/libhts2.substvars rm -f debian/libhts2.*.debhelper rm -rf debian/libhts2/ rm -f debian/libhts-dev.substvars rm -f debian/libhts-dev.*.debhelper rm -rf debian/libhts-dev/ rm -f debian/htslib-test.substvars rm -f debian/htslib-test.*.debhelper rm -rf debian/htslib-test/ rm -f debian/tabix.substvars rm -f debian/tabix.*.debhelper rm -rf debian/tabix/ rm -rf debian/.debhelper/ rm -f debian/*.debhelper.log rm -f debian/files find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) rm -f *-stamp debian/rules build-arch dh build-arch dh_testdir -a dh_update_autotools_config -a dh_autoreconf -a find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.before autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + > debian/autoreconf.after rm -f debian/*.debhelper.log debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' autoconf ./configure --enable-libcurl checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for ranlib... ranlib checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 checking shared library type... plain .so checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/param.h... yes checking for getpagesize... yes checking for working mmap... yes checking for gmtime_r... yes checking whether fdatasync is declared... yes checking for fdatasync... yes checking for library containing log... -lm checking for zlib.h... yes checking for inflate in -lz... yes checking for library containing connect... none required checking for bzlib.h... yes checking for BZ2_bzBuffToBuffCompress in -lbz2... yes checking for lzma.h... yes checking for lzma_easy_buffer_encode in -llzma... yes checking for curl_easy_pause in -lcurl... yes checking for CCHmac... no checking for library containing HMAC... -lcrypto configure: creating ./config.status config.status: creating config.mk config.status: creating htslib.pc.tmp config.status: creating config.h make[1]: Leaving directory '/<>' rm -f debian/*.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ CFLAGS="$(dpkg-buildflags --get CFLAGS)" \ CPPFLAGS="-I. -DSAMTOOLS=1 $(dpkg-buildflags --get CPPFLAGS)" \ LDFLAGS="$(dpkg-buildflags --get LDFLAGS)" \ # re-try later LDLIBS=-lhts \ PACKAGE_VERSION="1.4.1-2ubuntu1" \ libdir=/usr/lib/i386-linux-gnu make -j4 "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "CPPFLAGS=-I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kfunc.o kfunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o knetfile.o knetfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kstring.o kstring.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bcf_sr_sort.o bcf_sr_sort.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzf.o bgzf.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o errmod.o errmod.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o faidx.o faidx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile.o hfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_net.o hfile_net.c echo '#define HTS_VERSION "1.4.1"' > version.h gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o md5.o md5.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multipart.o multipart.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o probaln.o probaln.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o realn.o realn.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o regidx.o regidx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sam.o sam.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o synced_bcf_reader.o synced_bcf_reader.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf_sweep.o vcf_sweep.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tbx.o tbx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o textutils.o textutils.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o thread_pool.o thread_pool.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcf.o vcf.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o vcfutils.o vcfutils.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_codecs.o cram/cram_codecs.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_decode.o cram/cram_decode.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_encode.o cram/cram_encode.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_external.o cram/cram_external.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_index.o cram/cram_index.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_io.o cram/cram_io.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_samtools.o cram/cram_samtools.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/cram_stats.o cram/cram_stats.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/files.o cram/files.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/mFILE.o cram/mFILE.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/open_trace_file.o cram/open_trace_file.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/pooled_alloc.o cram/pooled_alloc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/rANS_static.o cram/rANS_static.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/sam_header.o cram/sam_header.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/string_alloc.o cram/string_alloc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/vlen.o cram/vlen.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cram/zfio.o cram/zfio.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_libcurl.o hfile_libcurl.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_gcs.o hfile_gcs.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hfile_s3.o hfile_s3.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o kfunc.pico kfunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o knetfile.pico knetfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o kstring.pico kstring.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o bcf_sr_sort.pico bcf_sr_sort.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o bgzf.pico bgzf.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o errmod.pico errmod.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o faidx.pico faidx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile.pico hfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_net.pico hfile_net.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hts.pico hts.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o md5.pico md5.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o multipart.pico multipart.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o probaln.pico probaln.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o realn.pico realn.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o regidx.pico regidx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o sam.pico sam.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o synced_bcf_reader.pico synced_bcf_reader.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcf_sweep.pico vcf_sweep.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o tbx.pico tbx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o textutils.pico textutils.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o thread_pool.pico thread_pool.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcf.pico vcf.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o vcfutils.pico vcfutils.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_codecs.pico cram/cram_codecs.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_decode.pico cram/cram_decode.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_encode.pico cram/cram_encode.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_external.pico cram/cram_external.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_index.pico cram/cram_index.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_io.pico cram/cram_io.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_samtools.pico cram/cram_samtools.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/cram_stats.pico cram/cram_stats.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/files.pico cram/files.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/mFILE.pico cram/mFILE.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/open_trace_file.pico cram/open_trace_file.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/pooled_alloc.pico cram/pooled_alloc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/rANS_static.pico cram/rANS_static.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/sam_header.pico cram/sam_header.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/string_alloc.pico cram/string_alloc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/vlen.pico cram/vlen.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o cram/zfio.pico cram/zfio.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_libcurl.pico hfile_libcurl.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_gcs.pico hfile_gcs.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -fpic -c -o hfile_s3.pico hfile_s3.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bgzip.o bgzip.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o htsfile.o htsfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o tabix.o tabix.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hts_endian.o test/hts_endian.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/fieldarith.o test/fieldarith.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/hfile.o test/hfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/sam.o test/sam.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_bgzf.o test/test_bgzf.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-regidx.o test/test-regidx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test_view.o test/test_view.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-api.o test/test-vcf-api.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-vcf-sweep.o test/test-vcf-sweep.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o test/test-bcf-sr.o test/test-bcf-sr.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I. -DSAMTOOLS=1 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o hts.o hts.c gcc -shared -Wl,-soname,libhts.so.2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o libhts.so kfunc.pico knetfile.pico kstring.pico bcf_sr_sort.pico bgzf.pico errmod.pico faidx.pico hfile.pico hfile_net.pico hts.pico md5.pico multipart.pico probaln.pico realn.pico regidx.pico sam.pico synced_bcf_reader.pico vcf_sweep.pico tbx.pico textutils.pico thread_pool.pico vcf.pico vcfutils.pico cram/cram_codecs.pico cram/cram_decode.pico cram/cram_encode.pico cram/cram_external.pico cram/cram_index.pico cram/cram_io.pico cram/cram_samtools.pico cram/cram_stats.pico cram/files.pico cram/mFILE.pico cram/open_trace_file.pico cram/pooled_alloc.pico cram/rANS_static.pico cram/sam_header.pico cram/string_alloc.pico cram/vlen.pico cram/zfio.pico hfile_libcurl.pico hfile_gcs.pico hfile_s3.pico -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/hts_endian test/hts_endian.o -llzma -lbz2 -lz -lm -lcurl -lcrypto ln -sf libhts.so libhts.so.2 ar -rc libhts.a kfunc.o knetfile.o kstring.o bcf_sr_sort.o bgzf.o errmod.o faidx.o hfile.o hfile_net.o hts.o md5.o multipart.o probaln.o realn.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o textutils.o thread_pool.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o cram/vlen.o cram/zfio.o hfile_libcurl.o hfile_gcs.o hfile_s3.o ranlib libhts.a gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o bgzip bgzip.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o htsfile htsfile.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o tabix tabix.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/fieldarith test/fieldarith.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/hfile test/hfile.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/sam test/sam.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test_bgzf test/test_bgzf.o libhts.a -lz -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test-regidx test/test-regidx.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test_view test/test_view.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test-vcf-api test/test-vcf-api.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test-vcf-sweep test/test-vcf-sweep.o libhts.a -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread gcc -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o test/test-bcf-sr test/test-bcf-sr.o libhts.a -lz -llzma -lbz2 -lz -lm -lcurl -lcrypto -lpthread make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a rm -f debian/libhts2.substvars rm -f debian/libhts2.*.debhelper rm -rf debian/.debhelper/generated/libhts2/ rm -rf debian/libhts2/ rm -f debian/libhts-dev.substvars rm -f debian/libhts-dev.*.debhelper rm -rf debian/.debhelper/generated/libhts-dev/ rm -rf debian/libhts-dev/ rm -f debian/tabix.substvars rm -f debian/tabix.*.debhelper rm -rf debian/.debhelper/generated/tabix/ rm -rf debian/tabix/ rm -f debian/*.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/<>' for binary in sam test-regidx hts_endian test-bcf-sr test_bgzf ; do \ rm /<>/test/${binary} ; \ done dh_auto_install -- \ prefix=/usr \ libdir=/usr/lib/i386-linux-gnu \ PACKAGE_VERSION="1.4.1-2ubuntu1" install -d debian/libhts2 debian/libhts-dev debian/tabix make -j4 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no prefix=/usr libdir=/usr/lib/i386-linux-gnu PACKAGE_VERSION=1.4.1-2ubuntu1 make[2]: Entering directory '/<>' mkdir -p -m 755 /<>/debian/tmp/usr/bin /<>/debian/tmp/usr/include /<>/debian/tmp/usr/include/htslib /<>/debian/tmp/usr/lib/i386-linux-gnu /<>/debian/tmp/usr/share/man/man1 /<>/debian/tmp/usr/share/man/man5 /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig if test -n ""; then mkdir -p -m 755 /<>/debian/tmp; fi install -p -m 644 libhts.so /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 sed -e 's#@-includedir@#/usr/include#g;s#@-libdir@#/usr/lib/i386-linux-gnu#g;s#@-PACKAGE_VERSION@#1.4.1-2ubuntu1#g' htslib.pc.tmp > /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc chmod 644 /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc ln -sf libhts.so.1.4.1-2ubuntu1 /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so ln -sf libhts.so.1.4.1-2ubuntu1 /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.so.2 install -p bgzip htsfile tabix /<>/debian/tmp/usr/bin if test -n ""; then install -p /<>/debian/tmp; fi install -p -m 644 htslib/*.h /<>/debian/tmp/usr/include/htslib install -p -m 644 libhts.a /<>/debian/tmp/usr/lib/i386-linux-gnu/libhts.a install -p -m 644 htsfile.1 tabix.1 /<>/debian/tmp/usr/share/man/man1 install -p -m 644 faidx.5 sam.5 vcf.5 /<>/debian/tmp/usr/share/man/man5 make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a install -d debian/libhts2/usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 debian/libhts2/usr/lib/i386-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libhts.so.2 debian/libhts2/usr/lib/i386-linux-gnu/ install -d debian/.debhelper/generated/libhts2 install -d debian/libhts-dev/usr/include cp --reflink=auto -a debian/tmp/usr/include/htslib debian/libhts-dev/usr/include/ install -d debian/libhts-dev/usr/lib/i386-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libhts.a debian/libhts-dev/usr/lib/i386-linux-gnu/ cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/libhts.so debian/libhts-dev/usr/lib/i386-linux-gnu/ install -d debian/libhts-dev/usr/share/man/man5 cp --reflink=auto -a debian/tmp/usr/share/man/man5/faidx.5 debian/libhts-dev/usr/share/man/man5/ cp --reflink=auto -a debian/tmp/usr/share/man/man5/sam.5 debian/libhts-dev/usr/share/man/man5/ cp --reflink=auto -a debian/tmp/usr/share/man/man5/vcf.5 debian/libhts-dev/usr/share/man/man5/ install -d debian/libhts-dev/usr/lib/i386-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/htslib.pc debian/libhts-dev/usr/lib/i386-linux-gnu/pkgconfig/ install -d debian/libhts-dev/usr/include/htslib/cram cp --reflink=auto -a ./cram/cram.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_codecs.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_decode.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_encode.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_index.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_io.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_samtools.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_stats.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/cram_structs.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/mFILE.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/misc.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/open_trace_file.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/os.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/pooled_alloc.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/rANS_byte.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/rANS_static.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/sam_header.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/string_alloc.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/vlen.h debian/libhts-dev/usr/include/htslib/cram/ cp --reflink=auto -a ./cram/zfio.h debian/libhts-dev/usr/include/htslib/cram/ install -d debian/.debhelper/generated/libhts-dev install -d debian/.debhelper/generated/htslib-test install -d debian/tabix/usr/bin cp --reflink=auto -a ./tabix debian/tabix/usr/bin/ cp --reflink=auto -a ./bgzip debian/tabix/usr/bin/ cp --reflink=auto -a ./htsfile debian/tabix/usr/bin/ install -d debian/.debhelper/generated/tabix dh_installdocs -a install -d debian/libhts2/usr/share/doc/libhts2 install -p -m0644 debian/copyright debian/libhts2/usr/share/doc/libhts2/copyright install -d debian/libhts-dev/usr/share/doc/libhts-dev install -p -m0644 debian/copyright debian/libhts-dev/usr/share/doc/libhts-dev/copyright install -d debian/tabix/usr/share/doc/tabix install -p -m0644 debian/copyright debian/tabix/usr/share/doc/tabix/copyright rm -f debian/*.debhelper.log debian/rules override_dh_installchangelogs make[1]: Entering directory '/<>' dh_installchangelogs NEWS install -p -m0644 debian/changelog debian/libhts2/usr/share/doc/libhts2/changelog.Debian install -p -m0644 NEWS debian/libhts2/usr/share/doc/libhts2/changelog install -p -m0644 debian/changelog debian/libhts-dev/usr/share/doc/libhts-dev/changelog.Debian install -p -m0644 NEWS debian/libhts-dev/usr/share/doc/libhts-dev/changelog install -p -m0644 debian/changelog debian/tabix/usr/share/doc/tabix/changelog.Debian install -p -m0644 NEWS debian/tabix/usr/share/doc/tabix/changelog make[1]: Leaving directory '/<>' dh_installman -a man --recode UTF-8 ./faidx\.5 > faidx\.5\.new chmod 0755 -- faidx.5.new chown 0:0 -- faidx.5.new mv -f faidx.5.new faidx.5 man --recode UTF-8 ./sam\.5 > sam\.5\.new chmod 0755 -- sam.5.new chown 0:0 -- sam.5.new mv -f sam.5.new sam.5 man --recode UTF-8 ./vcf\.5 > vcf\.5\.new chmod 0755 -- vcf.5.new chown 0:0 -- vcf.5.new mv -f vcf.5.new vcf.5 install -d debian/tabix/usr/share/man/man1/ install -p -m0644 tabix.1 debian/tabix/usr/share/man/man1/tabix.1 install -p -m0644 htsfile.1 debian/tabix/usr/share/man/man1/htsfile.1 man --recode UTF-8 ./tabix\.1 > tabix\.1\.new chmod 0755 -- tabix.1.new chown 0:0 -- tabix.1.new mv -f tabix.1.new tabix.1 man --recode UTF-8 ./htsfile\.1 > htsfile\.1\.new chmod 0755 -- htsfile.1.new chown 0:0 -- htsfile.1.new mv -f htsfile.1.new htsfile.1 dh_lintian -a install -d debian/libhts2/usr/share/lintian/overrides install -p -m0644 debian/libhts2.lintian-overrides debian/libhts2/usr/share/lintian/overrides/libhts2 install -d debian/tabix/usr/share/lintian/overrides install -p -m0644 debian/tabix.lintian-overrides debian/tabix/usr/share/lintian/overrides/tabix dh_perl -a dh_link -a rm -f debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.2 ln -sf libhts.so.1.4.1-2ubuntu1 debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.2 rm -f debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.so ln -sf libhts.so.1.4.1-2ubuntu1 debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.so rm -f debian/tabix/usr/share/man/man1/bgzip.1.gz ln -sf tabix.1.gz debian/tabix/usr/share/man/man1/bgzip.1.gz dh_strip_nondeterminism -a Using 1498233555 as canonical time Normalizing debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.a dh_compress -a cd debian/libhts2 chmod a-x usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian gzip -9nf usr/share/doc/libhts2/changelog usr/share/doc/libhts2/changelog.Debian cd '/<>' cd debian/libhts-dev chmod a-x usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 gzip -9nf usr/share/doc/libhts-dev/changelog usr/share/doc/libhts-dev/changelog.Debian usr/share/man/man5/faidx.5 usr/share/man/man5/sam.5 usr/share/man/man5/vcf.5 cd '/<>' cd debian/tabix chmod a-x usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 gzip -9nf usr/share/doc/tabix/changelog usr/share/doc/tabix/changelog.Debian usr/share/man/man1/htsfile.1 usr/share/man/man1/tabix.1 cd '/<>' dh_fixperms -a find debian/libhts2 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts2 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts2/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts2/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts2/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts2/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhts-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhts-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhts-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhts-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhts-dev/usr/share/man debian/libhts-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhts-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/tabix -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/tabix ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/tabix/usr/share/doc -type f -a -true -a ! -regex 'debian/tabix/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/tabix/usr/share/man debian/tabix/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/tabix/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_strip -a install -d debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/36 objcopy --only-keep-debug --compress-debug-sections debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/36/0cefd0e644d5ab5b8d318b55d07583f305a803.debug chmod 0644 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/36/0cefd0e644d5ab5b8d318b55d07583f305a803.debug chown 0:0 -- debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/36/0cefd0e644d5ab5b8d318b55d07583f305a803.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 objcopy --add-gnu-debuglink debian/.debhelper/libhts2/dbgsym-root/usr/lib/debug/.build-id/36/0cefd0e644d5ab5b8d318b55d07583f305a803.debug debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 install -d debian/.debhelper/libhts2/dbgsym-root/usr/share/doc ln -s libhts2 debian/.debhelper/libhts2/dbgsym-root/usr/share/doc/libhts2-dbgsym strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhts-dev/usr/lib/i386-linux-gnu/libhts.a install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/5d objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/tabix debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/5d/32dcb33d8b3e6bcee44158542cef19d34573a9.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/5d/32dcb33d8b3e6bcee44158542cef19d34573a9.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/5d/32dcb33d8b3e6bcee44158542cef19d34573a9.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/tabix objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/5d/32dcb33d8b3e6bcee44158542cef19d34573a9.debug debian/tabix/usr/bin/tabix install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/62 objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/htsfile debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/62/8c5a723babe885d62882aec2225a0944ea9f36.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/62/8c5a723babe885d62882aec2225a0944ea9f36.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/62/8c5a723babe885d62882aec2225a0944ea9f36.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/htsfile objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/62/8c5a723babe885d62882aec2225a0944ea9f36.debug debian/tabix/usr/bin/htsfile install -d debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7b objcopy --only-keep-debug --compress-debug-sections debian/tabix/usr/bin/bgzip debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7b/5f775df87353af8f069416e6e41bb7fcad483c.debug chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7b/5f775df87353af8f069416e6e41bb7fcad483c.debug chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7b/5f775df87353af8f069416e6e41bb7fcad483c.debug strip --remove-section=.comment --remove-section=.note debian/tabix/usr/bin/bgzip objcopy --add-gnu-debuglink debian/.debhelper/tabix/dbgsym-root/usr/lib/debug/.build-id/7b/5f775df87353af8f069416e6e41bb7fcad483c.debug debian/tabix/usr/bin/bgzip install -d debian/.debhelper/tabix/dbgsym-root/usr/share/doc ln -s tabix debian/.debhelper/tabix/dbgsym-root/usr/share/doc/tabix-dbgsym dh_makeshlibs -a rm -f debian/libhts2/DEBIAN/shlibs install -d debian/libhts2/DEBIAN echo 'libhts 2 libhts2' >>debian/libhts2/DEBIAN/shlibs chmod 0644 -- debian/libhts2/DEBIAN/shlibs chown 0:0 -- debian/libhts2/DEBIAN/shlibs mv -f debian/.debhelper/generated/libhts2/triggers.new debian/.debhelper/generated/libhts2/triggers rm -f debian/libhts-dev/DEBIAN/shlibs rm -f debian/tabix/DEBIAN/shlibs dh_shlibdeps -a dpkg-shlibdeps -Tdebian/libhts2.substvars debian/libhts2/usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 install -d debian/libhts-dev/DEBIAN install -d debian/tabix/DEBIAN dpkg-shlibdeps -Tdebian/tabix.substvars debian/tabix/usr/bin/tabix debian/tabix/usr/bin/htsfile debian/tabix/usr/bin/bgzip dh_installdeb -a install -p -m0644 debian/.debhelper/generated/libhts2/triggers debian/libhts2/DEBIAN/triggers dh_gencontrol -a echo misc:Depends= >> debian/libhts2.substvars echo misc:Pre-Depends= >> debian/libhts2.substvars install -d debian/.debhelper/libhts2/dbgsym-root/DEBIAN dpkg-gencontrol -plibhts2 -ldebian/changelog -Tdebian/libhts2.substvars -Pdebian/.debhelper/libhts2/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=extra -UHomepage -DAuto-Built-Package=debug-symbols -DPackage=libhts2-dbgsym "-DDepends=libhts2 (= \${binary:Version})" "-DDescription=Debug symbols for libhts2" -DBuild-Ids=360cefd0e644d5ab5b8d318b55d07583f305a803 -DSection=debug -DPackage-Type=ddeb -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhts2/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libhts2/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhts2 -ldebian/changelog -Tdebian/libhts2.substvars -Pdebian/libhts2 chmod 0644 -- debian/libhts2/DEBIAN/control chown 0:0 -- debian/libhts2/DEBIAN/control echo misc:Depends= >> debian/libhts-dev.substvars echo misc:Pre-Depends= >> debian/libhts-dev.substvars dpkg-gencontrol -plibhts-dev -ldebian/changelog -Tdebian/libhts-dev.substvars -Pdebian/libhts-dev chmod 0644 -- debian/libhts-dev/DEBIAN/control chown 0:0 -- debian/libhts-dev/DEBIAN/control echo misc:Depends= >> debian/tabix.substvars echo misc:Pre-Depends= >> debian/tabix.substvars install -d debian/.debhelper/tabix/dbgsym-root/DEBIAN dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/.debhelper/tabix/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=extra -UHomepage -DAuto-Built-Package=debug-symbols -DPackage=tabix-dbgsym "-DDepends=tabix (= \${binary:Version})" "-DDescription=Debug symbols for tabix" "-DBuild-Ids=5d32dcb33d8b3e6bcee44158542cef19d34573a9 628c5a723babe885d62882aec2225a0944ea9f36 7b5f775df87353af8f069416e6e41bb7fcad483c" -DSection=debug -DPackage-Type=ddeb -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptabix -ldebian/changelog -Tdebian/tabix.substvars -Pdebian/tabix chmod 0644 -- debian/tabix/DEBIAN/control chown 0:0 -- debian/tabix/DEBIAN/control dh_md5sums -a (cd debian/libhts2 >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libhts2/DEBIAN/md5sums chown 0:0 -- debian/libhts2/DEBIAN/md5sums (cd debian/.debhelper/libhts2/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/libhts2/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libhts2/dbgsym-root/DEBIAN/md5sums (cd debian/libhts-dev >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/libhts-dev/DEBIAN/md5sums chown 0:0 -- debian/libhts-dev/DEBIAN/md5sums (cd debian/tabix >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/tabix/DEBIAN/md5sums chown 0:0 -- debian/tabix/DEBIAN/md5sums (cd debian/.debhelper/tabix/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums) >/dev/null chmod 0644 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/tabix/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --build debian/libhts-dev .. install -d debian/.debhelper/scratch-space/build-libhts2 install -d debian/.debhelper/scratch-space/build-tabix dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/tabix/dbgsym-root debian/.debhelper/scratch-space/build-tabix dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/libhts2/dbgsym-root debian/.debhelper/scratch-space/build-libhts2 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing libhts2-dbgsym (in debian/.debhelper/libhts2/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing tabix-dbgsym (in debian/.debhelper/tabix/dbgsym-root); do_strip: , oemstrip: pkgstriptranslations: processing libhts-dev (in debian/libhts-dev); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/.debhelper/libhts2/dbgsym-root/DEBIAN/control, package libhts2-dbgsym, directory debian/.debhelper/libhts2/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package libhts2-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhts2-dbgsym' in 'debian/.debhelper/scratch-space/build-libhts2/libhts2-dbgsym_1.4.1-2ubuntu1_i386.deb'. pkgstripfiles: processing control file: debian/.debhelper/tabix/dbgsym-root/DEBIAN/control, package tabix-dbgsym, directory debian/.debhelper/tabix/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package tabix-dbgsym ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tabix-dbgsym' in 'debian/.debhelper/scratch-space/build-tabix/tabix-dbgsym_1.4.1-2ubuntu1_i386.deb'. Renaming libhts2-dbgsym_1.4.1-2ubuntu1_i386.deb to libhts2-dbgsym_1.4.1-2ubuntu1_i386.ddeb mv -f debian/.debhelper/scratch-space/build-libhts2/libhts2-dbgsym_1.4.1-2ubuntu1_i386.deb ../libhts2-dbgsym_1.4.1-2ubuntu1_i386.ddeb dpkg-deb --build debian/libhts2 .. INFO: pkgstriptranslations version 131 Renaming tabix-dbgsym_1.4.1-2ubuntu1_i386.deb to tabix-dbgsym_1.4.1-2ubuntu1_i386.ddeb mv -f debian/.debhelper/scratch-space/build-tabix/tabix-dbgsym_1.4.1-2ubuntu1_i386.deb ../tabix-dbgsym_1.4.1-2ubuntu1_i386.ddeb dpkg-deb --build debian/tabix .. pkgstriptranslations: processing libhts2 (in debian/libhts2); do_strip: , oemstrip: pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com INFO: pkgstriptranslations version 131 pkgstriptranslations: processing tabix (in debian/tabix); do_strip: , oemstrip: pkgstripfiles: processing control file: debian/libhts2/DEBIAN/control, package libhts2, directory debian/libhts2 .. removing usr/share/doc/libhts2/changelog.gz pkgstripfiles: Truncating usr/share/doc/libhts2/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package libhts2 ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhts2' in '../libhts2_1.4.1-2ubuntu1_i386.deb'. pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/tabix/DEBIAN/control, package tabix, directory debian/tabix .. removing usr/share/doc/tabix/changelog.gz INFO: pkgstripfiles: waiting for lock (tabix) ... INFO: pkgstripfiles: waiting for lock (tabix) ... INFO: pkgstripfiles: waiting for lock (tabix) ... pkgmaintainermangler: Not overriding Maintainer for domain lists.ubuntu.com pkgstripfiles: processing control file: debian/libhts-dev/DEBIAN/control, package libhts-dev, directory debian/libhts-dev .. removing usr/share/doc/libhts-dev/changelog.gz Searching for duplicated docs in dependency libhts2... symlinking changelog.Debian.gz in libhts-dev to file in libhts2 pkgstripfiles: Running PNG optimization (using 4 cpus) for package libhts-dev ... pkgstripfiles: No PNG files. dpkg-deb: building package 'libhts-dev' in '../libhts-dev_1.4.1-2ubuntu1_i386.deb'. pkgstripfiles: Truncating usr/share/doc/tabix/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package tabix ... pkgstripfiles: No PNG files. dpkg-deb: building package 'tabix' in '../tabix_1.4.1-2ubuntu1_i386.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../htslib_1.4.1-2ubuntu1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build htslib-1.4.1 dpkg-source: info: using options from htslib-1.4.1/debian/source/options: --single-debian-patch --extend-diff-ignore=^(\.travis\.yml|README.md)$ dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20170623-1616 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ htslib_1.4.1-2ubuntu1_i386.changes: ----------------------------------- Format: 1.8 Date: Fri, 23 Jun 2017 21:29:15 +0530 Source: htslib Binary: libhts2 libhts-dev htslib-test tabix Architecture: i386 Version: 1.4.1-2ubuntu1 Distribution: artful-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Bhavani Shankar Description: htslib-test - Test data for HTSlib libhts-dev - Development files for the HTSlib libhts2 - C library for high-throughput sequencing data formats tabix - generic indexer for TAB-delimited genome position files Changes: htslib (1.4.1-2ubuntu1) artful; urgency=medium . * Merge from Debian unstable. Remaining changes: - Skip test-suites on armhf i386 and s390x due to broken endiannes and alignment issues. See https://github.com/samtools/htslib/issues/98 for details. Hopefully upstream will agree on a concept and merge it soon. Checksums-Sha1: 1cdd81f0675903bbe0ecb4a0b13acc202244d0ec 7036 htslib_1.4.1-2ubuntu1_i386.buildinfo baeff72233dd59a1a890f1b5031c024f8985ed4e 414620 libhts-dev_1.4.1-2ubuntu1_i386.deb e2440d3d4b2815c0f794339cfbcd9f7be005c4aa 718910 libhts2-dbgsym_1.4.1-2ubuntu1_i386.ddeb 13cbee426747882ad601121df102296dda8ed38c 307376 libhts2_1.4.1-2ubuntu1_i386.deb a7cc2fc22b97d0635d3a3657229d4f98ef3db593 1782148 tabix-dbgsym_1.4.1-2ubuntu1_i386.ddeb a35178ac05210c34244efe72f2d10db6780e12d3 339330 tabix_1.4.1-2ubuntu1_i386.deb Checksums-Sha256: 915bc4017d1773283b23036e7060f3f22d9ed759f8af6b6367f8967e62248566 7036 htslib_1.4.1-2ubuntu1_i386.buildinfo 47d00589311795c02465b4d6e3238a9fde7a192e1e68b908f101aaee81f61647 414620 libhts-dev_1.4.1-2ubuntu1_i386.deb fc3cfdeb4ddbcc007b26ccbd5c1112acebfed8bcccf13787033ad4b20d4e35b5 718910 libhts2-dbgsym_1.4.1-2ubuntu1_i386.ddeb 12fc5cd1897fbc6d2db715457843af07b9bd6894b31c208298de44226b906cac 307376 libhts2_1.4.1-2ubuntu1_i386.deb 3ab6073d9a9fe50b868bd50a4c391c1a126640a40ce669c3d619df9e1f8b6ea2 1782148 tabix-dbgsym_1.4.1-2ubuntu1_i386.ddeb 3fc5f84d7f18827ddeecfd5987eeae253f67d4eef0e9fdcf2086245231e87244 339330 tabix_1.4.1-2ubuntu1_i386.deb Files: 1ac121fbef88515f9238baa723da82a7 7036 science optional htslib_1.4.1-2ubuntu1_i386.buildinfo 5c06bfb57e5e3d204d5f92ba340ee90d 414620 libdevel optional libhts-dev_1.4.1-2ubuntu1_i386.deb 39905bc99485010ce7b4837319a9e528 718910 debug extra libhts2-dbgsym_1.4.1-2ubuntu1_i386.ddeb fd0e6b5243cb9807194f7b4482db8fa6 307376 libs optional libhts2_1.4.1-2ubuntu1_i386.deb 3a485eadf6a47d735105e9df34fc108d 1782148 debug extra tabix-dbgsym_1.4.1-2ubuntu1_i386.ddeb 874ab6fec99ff9a44ec47a3af982a162 339330 science optional tabix_1.4.1-2ubuntu1_i386.deb Original-Maintainer: Debian Med Packaging Team +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libhts-dev_1.4.1-2ubuntu1_i386.deb ---------------------------------- new debian package, version 2.0. size 414620 bytes: control archive=2263 bytes. 1115 bytes, 25 lines control 3299 bytes, 50 lines md5sums Package: libhts-dev Source: htslib Version: 1.4.1-2ubuntu1 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 1417 Depends: libhts2 (= 1.4.1-2ubuntu1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: Development files for the HTSlib HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. . This package contains development files for the HTSlib: headers, static library, manual pages, etc. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2017-06-23 15:59 ./ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/include/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/include/htslib/ -rw-r--r-- root/root 14541 2017-05-08 10:07 ./usr/include/htslib/bgzf.h -rw-r--r-- root/root 15393 2017-05-08 10:07 ./usr/include/htslib/cram.h drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/include/htslib/cram/ -rw-r--r-- root/root 2419 2017-05-08 10:07 ./usr/include/htslib/cram/cram.h -rw-r--r-- root/root 6174 2017-05-08 10:07 ./usr/include/htslib/cram/cram_codecs.h -rw-r--r-- root/root 3633 2017-06-23 15:59 ./usr/include/htslib/cram/cram_decode.h -rw-r--r-- root/root 3599 2017-05-08 10:07 ./usr/include/htslib/cram/cram_encode.h -rw-r--r-- root/root 3363 2017-05-08 10:07 ./usr/include/htslib/cram/cram_index.h -rw-r--r-- root/root 24957 2017-05-08 10:07 ./usr/include/htslib/cram/cram_io.h -rw-r--r-- root/root 3583 2017-05-08 10:07 ./usr/include/htslib/cram/cram_samtools.h -rw-r--r-- root/root 2279 2017-05-08 10:07 ./usr/include/htslib/cram/cram_stats.h -rw-r--r-- root/root 23670 2017-05-08 10:07 ./usr/include/htslib/cram/cram_structs.h -rw-r--r-- root/root 3020 2017-05-08 10:07 ./usr/include/htslib/cram/mFILE.h -rw-r--r-- root/root 4306 2017-05-08 10:07 ./usr/include/htslib/cram/misc.h -rw-r--r-- root/root 5025 2017-05-08 10:07 ./usr/include/htslib/cram/open_trace_file.h -rw-r--r-- root/root 7526 2017-06-23 15:59 ./usr/include/htslib/cram/os.h -rw-r--r-- root/root 2184 2017-05-08 10:07 ./usr/include/htslib/cram/pooled_alloc.h -rw-r--r-- root/root 12255 2017-05-08 10:07 ./usr/include/htslib/cram/rANS_byte.h -rw-r--r-- root/root 2033 2017-05-08 10:07 ./usr/include/htslib/cram/rANS_static.h -rw-r--r-- root/root 14040 2017-05-08 10:07 ./usr/include/htslib/cram/sam_header.h -rw-r--r-- root/root 2320 2017-05-08 10:07 ./usr/include/htslib/cram/string_alloc.h -rw-r--r-- root/root 1836 2017-05-08 10:07 ./usr/include/htslib/cram/vlen.h -rw-r--r-- root/root 2090 2017-05-08 10:07 ./usr/include/htslib/cram/zfio.h -rw-r--r-- root/root 5696 2017-05-08 10:07 ./usr/include/htslib/faidx.h -rw-r--r-- root/root 8754 2017-05-08 10:07 ./usr/include/htslib/hfile.h -rw-r--r-- root/root 27510 2017-05-08 10:07 ./usr/include/htslib/hts.h -rw-r--r-- root/root 2649 2017-05-08 10:07 ./usr/include/htslib/hts_defs.h -rw-r--r-- root/root 11449 2017-05-08 10:07 ./usr/include/htslib/hts_endian.h -rw-r--r-- root/root 4195 2017-05-08 10:07 ./usr/include/htslib/kbitset.h -rw-r--r-- root/root 2716 2017-05-08 10:07 ./usr/include/htslib/kfunc.h -rw-r--r-- root/root 21540 2017-05-08 10:07 ./usr/include/htslib/khash.h -rw-r--r-- root/root 3990 2017-05-08 10:07 ./usr/include/htslib/khash_str2int.h -rw-r--r-- root/root 5086 2017-05-08 10:07 ./usr/include/htslib/klist.h -rw-r--r-- root/root 2851 2017-05-08 10:07 ./usr/include/htslib/knetfile.h -rw-r--r-- root/root 8900 2017-05-08 10:07 ./usr/include/htslib/kseq.h -rw-r--r-- root/root 10152 2017-05-08 10:07 ./usr/include/htslib/ksort.h -rw-r--r-- root/root 6933 2017-05-08 10:07 ./usr/include/htslib/kstring.h -rw-r--r-- root/root 5845 2017-05-08 10:07 ./usr/include/htslib/regidx.h -rw-r--r-- root/root 23389 2017-05-08 10:07 ./usr/include/htslib/sam.h -rw-r--r-- root/root 14954 2017-05-08 10:07 ./usr/include/htslib/synced_bcf_reader.h -rw-r--r-- root/root 3118 2017-05-08 10:07 ./usr/include/htslib/tbx.h -rw-r--r-- root/root 9384 2017-05-08 10:07 ./usr/include/htslib/thread_pool.h -rw-r--r-- root/root 43319 2017-05-08 10:07 ./usr/include/htslib/vcf.h -rw-r--r-- root/root 1602 2017-05-08 10:07 ./usr/include/htslib/vcf_sweep.h -rw-r--r-- root/root 4822 2017-05-08 10:07 ./usr/include/htslib/vcfutils.h drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/lib/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 1001352 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/libhts.a lrwxrwxrwx root/root 0 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/libhts.so -> libhts.so.1.4.1-2ubuntu1 drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 500 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/pkgconfig/htslib.pc drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/libhts-dev/ lrwxrwxrwx root/root 0 2017-06-23 15:59 ./usr/share/doc/libhts-dev/changelog.Debian.gz -> ../libhts2/changelog.Debian.gz -rw-r--r-- root/root 5776 2017-06-18 16:53 ./usr/share/doc/libhts-dev/copyright drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/man/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/man/man5/ -rw-r--r-- root/root 2080 2017-06-23 15:59 ./usr/share/man/man5/faidx.5.gz -rw-r--r-- root/root 1535 2017-06-23 15:59 ./usr/share/man/man5/sam.5.gz -rw-r--r-- root/root 1854 2017-06-23 15:59 ./usr/share/man/man5/vcf.5.gz libhts2_1.4.1-2ubuntu1_i386.deb ------------------------------- new debian package, version 2.0. size 307376 bytes: control archive=1095 bytes. 1135 bytes, 22 lines control 294 bytes, 4 lines md5sums 17 bytes, 1 lines shlibs 60 bytes, 2 lines triggers Package: libhts2 Source: htslib Version: 1.4.1-2ubuntu1 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 786 Depends: libbz2-1.0, libc6 (>= 2.23), libcurl3-gnutls (>= 7.18.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.0.0 (>= 1.0.0), zlib1g (>= 1:1.2.3.3) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/samtools/htslib Description: C library for high-throughput sequencing data formats HTSlib is an implementation of a unified C library for accessing common file formats, such as SAM (Sequence Alignment/Map), CRAM and VCF (Variant Call Format), used for high-throughput sequencing data, and is the core library used by samtools and bcftools. HTSlib only depends on zlib. It is known to be compatible with gcc, g++ and clang. . HTSlib implements a generalized BAM (binary SAM) index, with file extension ‘csi’ (coordinate-sorted index). The HTSlib file reader first looks for the new index and then for the old if the new index is absent. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2017-06-23 15:59 ./ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/lib/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 775504 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/libhts.so.1.4.1-2ubuntu1 lrwxrwxrwx root/root 0 2017-06-23 15:59 ./usr/lib/i386-linux-gnu/libhts.so.2 -> libhts.so.1.4.1-2ubuntu1 drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/libhts2/ -rw-r--r-- root/root 985 2017-06-23 15:59 ./usr/share/doc/libhts2/changelog.Debian.gz -rw-r--r-- root/root 5776 2017-06-18 16:53 ./usr/share/doc/libhts2/copyright drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 105 2017-06-18 12:19 ./usr/share/lintian/overrides/libhts2 tabix_1.4.1-2ubuntu1_i386.deb ----------------------------- new debian package, version 2.0. size 339330 bytes: control archive=1069 bytes. 1033 bytes, 20 lines control 482 bytes, 8 lines md5sums Package: tabix Source: htslib Version: 1.4.1-2ubuntu1 Architecture: i386 Maintainer: Ubuntu Developers Installed-Size: 1862 Depends: libbz2-1.0, libc6 (>= 2.15), libcurl3-gnutls (>= 7.18.0), liblzma5 (>= 5.1.1alpha+20120614), libssl1.0.0 (>= 1.0.0), zlib1g (>= 1:1.2.3.3) Section: science Priority: optional Homepage: https://github.com/samtools/htslib Description: generic indexer for TAB-delimited genome position files Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name. . This version of tabix is built from the HTSlib source. Original-Maintainer: Debian Med Packaging Team drwxr-xr-x root/root 0 2017-06-23 15:59 ./ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/bin/ -rwxr-xr-x root/root 558496 2017-06-23 15:59 ./usr/bin/bgzip -rwxr-xr-x root/root 648636 2017-06-23 15:59 ./usr/bin/htsfile -rwxr-xr-x root/root 665016 2017-06-23 15:59 ./usr/bin/tabix drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/doc/tabix/ -rw-r--r-- root/root 983 2017-06-23 15:59 ./usr/share/doc/tabix/changelog.Debian.gz -rw-r--r-- root/root 5776 2017-06-18 16:53 ./usr/share/doc/tabix/copyright drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/lintian/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 129 2017-06-18 16:53 ./usr/share/lintian/overrides/tabix drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/man/ drwxr-xr-x root/root 0 2017-06-23 15:59 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2017-06-23 15:59 ./usr/share/man/man1/bgzip.1.gz -> tabix.1.gz -rw-r--r-- root/root 1699 2017-06-23 15:59 ./usr/share/man/man1/htsfile.1.gz -rw-r--r-- root/root 2818 2017-06-23 15:59 ./usr/share/man/man1/tabix.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 58388 Build-Time: 55 Distribution: artful-proposed Host Architecture: i386 Install-Time: 12 Job: htslib_1.4.1-2ubuntu1.dsc Machine Architecture: amd64 Package: htslib Package-Time: 68 Source-Version: 1.4.1-2ubuntu1 Space: 58388 Status: successful Version: 1.4.1-2ubuntu1 -------------------------------------------------------------------------------- Finished at 20170623-1616 Build needed 00:01:08, 58388k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-12795295'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-12795295/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-12795295'] Unmounting chroot for build PACKAGEBUILD-12795295... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-12795295'] Removing build PACKAGEBUILD-12795295