RUN: /usr/share/launchpad-buildd/slavebin/slave-prep ['slave-prep'] Forking launchpad-buildd slave process... Kernel version: Linux lcy01-20 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 Buildd toolchain package versions: launchpad-buildd_140 python-lpbuildd_140 sbuild_0.67.0-2ubuntu7 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3 git-build-recipe_0.3.2 git_1:2.7.4-0ubuntu1 dpkg-dev_1.18.4ubuntu1.1 python-debian_0.1.27ubuntu2 qemu-user-static_1:2.5+dfsg-5ubuntu10.5. Syncing the system clock with the buildd NTP service... 2 Nov 03:25:55 ntpdate[1732]: adjust time server 10.211.37.1 offset 0.006022 sec RUN: /usr/share/launchpad-buildd/slavebin/unpack-chroot ['unpack-chroot', 'PACKAGEBUILD-11118613', '/home/buildd/filecache-default/94f0b0f826e99ad354ce9a7a99ba3c310ddcc327'] Unpacking chroot for build PACKAGEBUILD-11118613 RUN: /usr/share/launchpad-buildd/slavebin/mount-chroot ['mount-chroot', 'PACKAGEBUILD-11118613'] Mounting chroot for build PACKAGEBUILD-11118613 RUN: /usr/share/launchpad-buildd/slavebin/override-sources-list ['override-sources-list', 'PACKAGEBUILD-11118613', 'deb http://ftpmaster.internal/ubuntu zesty main universe', 'deb http://ftpmaster.internal/ubuntu zesty-security main universe', 'deb http://ftpmaster.internal/ubuntu zesty-updates main universe', 'deb http://ftpmaster.internal/ubuntu zesty-proposed main universe'] Overriding sources.list in build-PACKAGEBUILD-11118613 RUN: /usr/share/launchpad-buildd/slavebin/update-debian-chroot ['update-debian-chroot', 'PACKAGEBUILD-11118613', 'amd64'] Updating debian chroot for build PACKAGEBUILD-11118613 Get:1 http://ftpmaster.internal/ubuntu zesty InRelease [247 kB] Get:2 http://ftpmaster.internal/ubuntu zesty-security InRelease [92.2 kB] Get:3 http://ftpmaster.internal/ubuntu zesty-updates InRelease [92.1 kB] Get:4 http://ftpmaster.internal/ubuntu zesty-proposed InRelease [95.6 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 Packages [1224 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main Translation-en [583 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/universe amd64 Packages [7745 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/universe Translation-en [4486 kB] Get:9 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 Packages [55.6 kB] Get:10 http://ftpmaster.internal/ubuntu zesty-proposed/main Translation-en [30.4 kB] Get:11 http://ftpmaster.internal/ubuntu zesty-proposed/universe amd64 Packages [209 kB] Get:12 http://ftpmaster.internal/ubuntu zesty-proposed/universe Translation-en [88.1 kB] Fetched 14.9 MB in 3s (4181 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libperl5.24 perl-modules-5.24 The following packages will be upgraded: adduser base-files binutils cpp-6 dmsetup g++-6 gcc-6 gcc-6-base libapparmor1 libasan3 libasn1-8-heimdal libatomic1 libcc1-0 libcilkrts5 libdevmapper1.02.1 libgcc-6-dev libgcc1 libgomp1 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhx509-5-heimdal libitm1 libkrb5-26-heimdal libldap-2.4-2 liblsan0 liblzma5 libmpx2 libquadmath0 libroken18-heimdal libstdc++-6-dev libstdc++6 libsystemd0 libtsan0 libubsan0 libudev1 libwind0-heimdal linux-libc-dev perl perl-base systemd systemd-sysv tzdata ubuntu-keyring xz-utils 46 upgraded, 2 newly installed, 0 to remove and 0 not upgraded. Need to get 41.8 MB of archives. After this operation, 39.5 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu zesty/main amd64 base-files amd64 9.6ubuntu6 [55.8 kB] Get:2 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-modules-5.24 all 5.24.1~rc3-3 [2661 kB] Get:3 http://ftpmaster.internal/ubuntu zesty/main amd64 libperl5.24 amd64 5.24.1~rc3-3 [3466 kB] Get:4 http://ftpmaster.internal/ubuntu zesty/main amd64 perl amd64 5.24.1~rc3-3 [237 kB] Get:5 http://ftpmaster.internal/ubuntu zesty/main amd64 perl-base amd64 5.24.1~rc3-3 [1341 kB] Get:6 http://ftpmaster.internal/ubuntu zesty/main amd64 libapparmor1 amd64 2.10.95-4ubuntu5.2 [30.2 kB] Get:7 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzma5 amd64 5.2.2-1.2 [91.0 kB] Get:8 http://ftpmaster.internal/ubuntu zesty/main amd64 adduser all 3.113+nmu3ubuntu5 [161 kB] Get:9 http://ftpmaster.internal/ubuntu zesty/main amd64 systemd amd64 231-10 [2274 kB] Get:10 http://ftpmaster.internal/ubuntu zesty/main amd64 libsystemd0 amd64 231-10 [211 kB] Get:11 http://ftpmaster.internal/ubuntu zesty/main amd64 systemd-sysv amd64 231-10 [14.3 kB] Get:12 http://ftpmaster.internal/ubuntu zesty/main amd64 libquadmath0 amd64 6.2.0-10ubuntu1 [132 kB] Get:13 http://ftpmaster.internal/ubuntu zesty/main amd64 libitm1 amd64 6.2.0-10ubuntu1 [27.9 kB] Get:14 http://ftpmaster.internal/ubuntu zesty/main amd64 libcc1-0 amd64 6.2.0-10ubuntu1 [31.1 kB] Get:15 http://ftpmaster.internal/ubuntu zesty/main amd64 libgomp1 amd64 6.2.0-10ubuntu1 [73.9 kB] Get:16 http://ftpmaster.internal/ubuntu zesty/main amd64 libatomic1 amd64 6.2.0-10ubuntu1 [9144 B] Get:17 http://ftpmaster.internal/ubuntu zesty/main amd64 libasan3 amd64 6.2.0-10ubuntu1 [307 kB] Get:18 http://ftpmaster.internal/ubuntu zesty/main amd64 liblsan0 amd64 6.2.0-10ubuntu1 [117 kB] Get:19 http://ftpmaster.internal/ubuntu zesty/main amd64 libtsan0 amd64 6.2.0-10ubuntu1 [260 kB] Get:20 http://ftpmaster.internal/ubuntu zesty/main amd64 libubsan0 amd64 6.2.0-10ubuntu1 [108 kB] Get:21 http://ftpmaster.internal/ubuntu zesty/main amd64 libcilkrts5 amd64 6.2.0-10ubuntu1 [40.8 kB] Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 libmpx2 amd64 6.2.0-10ubuntu1 [11.4 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6-base amd64 6.2.0-10ubuntu1 [17.3 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++6 amd64 6.2.0-10ubuntu1 [400 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 g++-6 amd64 6.2.0-10ubuntu1 [7386 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libstdc++-6-dev amd64 6.2.0-10ubuntu1 [1398 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc-6-dev amd64 6.2.0-10ubuntu1 [2308 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 gcc-6 amd64 6.2.0-10ubuntu1 [7150 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 cpp-6 amd64 6.2.0-10ubuntu1 [6601 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 libgcc1 amd64 1:6.2.0-10ubuntu1 [38.1 kB] Get:31 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 binutils amd64 2.27-9ubuntu1 [2418 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main amd64 libudev1 amd64 231-10 [57.4 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-keyring all 2016.10.27 [16.6 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main amd64 tzdata all 2016h-1 [169 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libdevmapper1.02.1 amd64 2:1.02.133-1ubuntu1 [164 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main amd64 dmsetup amd64 2:1.02.133-1ubuntu1 [78.8 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libroken18-heimdal amd64 1.7~git20160703+dfsg-1 [41.0 kB] Get:38 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libasn1-8-heimdal amd64 1.7~git20160703+dfsg-1 [174 kB] Get:39 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimbase1-heimdal amd64 1.7~git20160703+dfsg-1 [29.2 kB] Get:40 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhcrypto4-heimdal amd64 1.7~git20160703+dfsg-1 [88.0 kB] Get:41 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libwind0-heimdal amd64 1.7~git20160703+dfsg-1 [47.9 kB] Get:42 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libhx509-5-heimdal amd64 1.7~git20160703+dfsg-1 [107 kB] Get:43 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libkrb5-26-heimdal amd64 1.7~git20160703+dfsg-1 [202 kB] Get:44 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libheimntlm0-heimdal amd64 1.7~git20160703+dfsg-1 [15.1 kB] Get:45 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libgssapi3-heimdal amd64 1.7~git20160703+dfsg-1 [96.7 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 libldap-2.4-2 amd64 2.4.42+dfsg-2ubuntu5 [161 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 xz-utils amd64 5.2.2-1.2 [83.2 kB] Get:48 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 linux-libc-dev amd64 4.8.0-27.29 [856 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 41.8 MB in 4s (10.3 MB/s) (Reading database ... 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Setting up libhcrypto4-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libhx509-5-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up gcc-6 (6.2.0-10ubuntu1) ... Setting up g++-6 (6.2.0-10ubuntu1) ... Setting up libkrb5-26-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libheimntlm0-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libgssapi3-heimdal:amd64 (1.7~git20160703+dfsg-1) ... Setting up libldap-2.4-2:amd64 (2.4.42+dfsg-2ubuntu5) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package ['sbuild-package', 'PACKAGEBUILD-11118613', 'amd64', 'zesty-proposed', '-c', 'chroot:autobuild', '--arch=amd64', '--dist=zesty-proposed', '--purge=never', '--nolog', '-A', 'hyphy_2.2.7+dfsg-1.dsc'] Initiating build PACKAGEBUILD-11118613 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-45-generic #66-Ubuntu SMP Wed Oct 19 14:12:37 UTC 2016 x86_64 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lcy01-20.buildd +==============================================================================+ | hyphy 2.2.7+dfsg-1 (amd64) 02 Nov 2016 03:26 | +==============================================================================+ Package: hyphy Version: 2.2.7+dfsg-1 Source Version: 2.2.7+dfsg-1 Distribution: zesty-proposed Machine Architecture: amd64 Host Architecture: amd64 Build Architecture: amd64 I: NOTICE: Log filtering will replace 'build/hyphy-x0V6ER/hyphy-2.2.7+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/hyphy-x0V6ER' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-11118613/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- hyphy_2.2.7+dfsg-1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-jiYFUH/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-jiYFUH/apt_archive ./ InRelease Get:2 copy:/<>/resolver-jiYFUH/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-jiYFUH/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-jiYFUH/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-jiYFUH/apt_archive ./ Packages [525 B] Fetched 2858 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 770 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-jiYFUH/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [770 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 770 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 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Merged Build-Depends: debhelper (>= 9), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libgtk2.0-dev, libssl-dev, libsqlite3-dev Filtered Build-Depends: debhelper (>= 9), cmake (>= 3.0), mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libgtk2.0-dev, libssl-dev, libsqlite3-dev dpkg-deb: building package 'sbuild-build-depends-hyphy-dummy' in '/<>/resolver-72kEuY/apt_archive/sbuild-build-depends-hyphy-dummy.deb'. Ign:1 copy:/<>/resolver-72kEuY/apt_archive ./ InRelease Get:2 copy:/<>/resolver-72kEuY/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-72kEuY/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-72kEuY/apt_archive ./ Sources [267 B] Get:5 copy:/<>/resolver-72kEuY/apt_archive ./ Packages [583 B] Fetched 2969 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install hyphy build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libperl5.22 perl-modules-5.22 Use 'sudo apt autoremove' to remove them. The following additional packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian libarchive-zip-perl libarchive13 libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcurl3 libcurl4-gnutls-dev libdatrie1 libdbus-1-3 libelf1 libexpat1 libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgraphite2-dev libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libltdl-dev libltdl7 liblzo2-2 libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsm-infinipath1 libpthread-stubs0-dev libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib librdmacm1 librsvg2-2 librsvg2-common libsigsegv2 libsm-dev libsm6 libsqlite3-dev libssl-dev libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxrandr-dev libxrandr2 libxrender-dev libxrender1 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config po-debconf python3 python3-minimal python3.5 python3.5-minimal shared-mime-info ubuntu-mono ucf x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation codeblocks eclipse ninja-build dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcairo2-doc cups-common libcurl4-doc libcurl3-dbg libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libglib2.0-doc gvfs libgtk2.0-doc libhwloc-contrib-plugins libice-doc icu-doc libtool-doc openmpi-doc imagemagick libpango1.0-doc pciutils librsvg2-bin libsm-doc sqlite3-doc gfortran | fortran95-compiler gcj-jdk libxcb-doc libxext-doc less www-browser opencl-icd libmail-box-perl python3-doc python3-tk python3-venv python3.5-venv python3.5-doc binfmt-support Recommended packages: curl | wget | lynx-cur dbus xdg-user-dirs libgail-common libgtk2.0-bin python openmpi-bin libpng-tools libssl-doc libx11-doc xml-core libmail-sendmail-perl The following NEW packages will be installed: adwaita-icon-theme autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism file fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gir1.2-atk-1.0 gir1.2-freedesktop gir1.2-gdkpixbuf-2.0 gir1.2-glib-2.0 gir1.2-gtk-2.0 gir1.2-pango-1.0 groff-base gtk-update-icon-cache hicolor-icon-theme humanity-icon-theme icu-devtools intltool-debian libarchive-zip-perl libarchive13 libatk1.0-0 libatk1.0-data libatk1.0-dev libavahi-client3 libavahi-common-data libavahi-common3 libcairo-gobject2 libcairo-script-interpreter2 libcairo2 libcairo2-dev libcroco3 libcups2 libcurl3 libcurl4-gnutls-dev libdatrie1 libdbus-1-3 libelf1 libexpat1 libexpat1-dev libfabric1 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1-dev libfreetype6 libfreetype6-dev libgdk-pixbuf2.0-0 libgdk-pixbuf2.0-common libgdk-pixbuf2.0-dev libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data libglib2.0-dev libgraphite2-3 libgraphite2-dev libgtk2.0-0 libgtk2.0-common libgtk2.0-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev libibverbs1 libice-dev libice6 libicu-dev libicu57 libjbig0 libjpeg-turbo8 libjpeg8 libjsoncpp1 libltdl-dev libltdl7 liblzo2-2 libmagic1 libmpdec2 libnl-3-200 libnl-route-3-200 libnuma-dev libnuma1 libopenmpi-dev libopenmpi2 libpango-1.0-0 libpango1.0-dev libpangocairo-1.0-0 libpangoft2-1.0-0 libpangoxft-1.0-0 libpciaccess0 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpixman-1-dev libpng-dev libpsm-infinipath1 libpthread-stubs0-dev libpython3-stdlib libpython3.5-minimal libpython3.5-stdlib librdmacm1 librsvg2-2 librsvg2-common libsigsegv2 libsm-dev libsm6 libsqlite3-dev libssl-dev libthai-data libthai0 libtiff5 libtimedate-perl libtool libunistring0 libx11-6 libx11-data libx11-dev libxau-dev libxau6 libxcb-render0 libxcb-render0-dev libxcb-shm0 libxcb-shm0-dev libxcb1 libxcb1-dev libxcomposite-dev libxcomposite1 libxcursor-dev libxcursor1 libxdamage-dev libxdamage1 libxdmcp-dev libxdmcp6 libxext-dev libxext6 libxfixes-dev libxfixes3 libxft-dev libxft2 libxi-dev libxi6 libxinerama-dev libxinerama1 libxml2 libxml2-utils libxrandr-dev libxrandr2 libxrender-dev libxrender1 m4 man-db mime-support mpi-default-dev ocl-icd-libopencl1 openmpi-common pkg-config po-debconf python3 python3-minimal python3.5 python3.5-minimal sbuild-build-depends-hyphy-dummy shared-mime-info ubuntu-mono ucf x11-common x11proto-composite-dev x11proto-core-dev x11proto-damage-dev x11proto-fixes-dev x11proto-input-dev x11proto-kb-dev x11proto-randr-dev x11proto-render-dev x11proto-xext-dev x11proto-xinerama-dev xorg-sgml-doctools xtrans-dev zlib1g-dev 0 upgraded, 196 newly installed, 0 to remove and 0 not upgraded. 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Get:22 http://ftpmaster.internal/ubuntu zesty/main amd64 man-db amd64 2.7.5-1 [854 kB] Get:23 http://ftpmaster.internal/ubuntu zesty/main amd64 cmake-data all 3.6.2-2ubuntu1 [1136 kB] Get:24 http://ftpmaster.internal/ubuntu zesty/main amd64 liblzo2-2 amd64 2.08-1.2 [48.7 kB] Get:25 http://ftpmaster.internal/ubuntu zesty/main amd64 libicu57 amd64 57.1-4 [7678 kB] Get:26 http://ftpmaster.internal/ubuntu zesty/main amd64 libxml2 amd64 2.9.4+dfsg1-2 [698 kB] Get:27 http://ftpmaster.internal/ubuntu zesty/main amd64 libarchive13 amd64 3.2.1-2 [283 kB] Get:28 http://ftpmaster.internal/ubuntu zesty/main amd64 libcurl3 amd64 7.50.1-1ubuntu1 [188 kB] Get:29 http://ftpmaster.internal/ubuntu zesty/main amd64 libjsoncpp1 amd64 1.7.2-1 [73.0 kB] Get:30 http://ftpmaster.internal/ubuntu zesty/main amd64 cmake amd64 3.6.2-2ubuntu1 [2883 kB] Get:31 http://ftpmaster.internal/ubuntu zesty/main amd64 fonts-dejavu-core all 2.37-1 [1041 kB] Get:32 http://ftpmaster.internal/ubuntu zesty/main amd64 ucf all 3.0036 [52.9 kB] Get:33 http://ftpmaster.internal/ubuntu zesty/main amd64 fontconfig-config all 2.11.94-0ubuntu2 [49.9 kB] Get:34 http://ftpmaster.internal/ubuntu zesty/main amd64 libfreetype6 amd64 2.6.3-3ubuntu1 [320 kB] Get:35 http://ftpmaster.internal/ubuntu zesty/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu2 [131 kB] Get:36 http://ftpmaster.internal/ubuntu zesty/main amd64 fontconfig amd64 2.11.94-0ubuntu2 [177 kB] Get:37 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 x11-common all 1:7.7+16ubuntu2 [21.9 kB] Get:38 http://ftpmaster.internal/ubuntu zesty/main amd64 libice6 amd64 2:1.0.9-1 [39.2 kB] Get:39 http://ftpmaster.internal/ubuntu zesty/main amd64 libjpeg-turbo8 amd64 1.5.0-0ubuntu1 [113 kB] Get:40 http://ftpmaster.internal/ubuntu zesty/main amd64 libpcrecpp0v5 amd64 2:8.39-2 [15.0 kB] Get:41 http://ftpmaster.internal/ubuntu zesty/main amd64 libsm6 amd64 2:1.2.2-1 [15.8 kB] Get:42 http://ftpmaster.internal/ubuntu zesty/main amd64 libunistring0 amd64 0.9.3-5.2ubuntu1 [279 kB] Get:43 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcomposite1 amd64 1:0.4.4-1 [7714 B] Get:44 http://ftpmaster.internal/ubuntu zesty/main amd64 libxfixes3 amd64 1:5.0.2-1 [10.8 kB] Get:45 http://ftpmaster.internal/ubuntu zesty/main amd64 libxrender1 amd64 1:0.9.9-2 [18.4 kB] Get:46 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcursor1 amd64 1:1.1.14-1 [22.8 kB] Get:47 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdamage1 amd64 1:1.1.4-2 [6946 B] Get:48 http://ftpmaster.internal/ubuntu zesty/main amd64 libxft2 amd64 2.3.2-1 [36.1 kB] Get:49 http://ftpmaster.internal/ubuntu zesty/main amd64 libxinerama1 amd64 2:1.1.3-1 [7908 B] Get:50 http://ftpmaster.internal/ubuntu zesty/main amd64 libjbig0 amd64 2.1-3.1 [26.6 kB] Get:51 http://ftpmaster.internal/ubuntu zesty/main amd64 libmagic1 amd64 1:5.28-2ubuntu1 [234 kB] Get:52 http://ftpmaster.internal/ubuntu zesty/main amd64 file amd64 1:5.28-2ubuntu1 [21.7 kB] Get:53 http://ftpmaster.internal/ubuntu zesty-proposed/main amd64 libdbus-1-3 amd64 1.10.10-1ubuntu2 [162 kB] Get:54 http://ftpmaster.internal/ubuntu zesty/main amd64 gettext-base amd64 0.19.8.1-1ubuntu2 [48.7 kB] Get:55 http://ftpmaster.internal/ubuntu zesty/main amd64 libglib2.0-0 amd64 2.50.0-1 [1140 kB] Get:56 http://ftpmaster.internal/ubuntu zesty/main amd64 libgirepository-1.0-1 amd64 1.50.0-1ubuntu2 [80.0 kB] Get:57 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-glib-2.0 amd64 1.50.0-1ubuntu2 [129 kB] Get:58 http://ftpmaster.internal/ubuntu zesty/main amd64 libelf1 amd64 0.166-2ubuntu1 [42.9 kB] Get:59 http://ftpmaster.internal/ubuntu zesty/main amd64 libglib2.0-data all 2.50.0-1 [134 kB] Get:60 http://ftpmaster.internal/ubuntu zesty/main amd64 libnuma1 amd64 2.0.11-1ubuntu2 [21.0 kB] Get:61 http://ftpmaster.internal/ubuntu zesty/main amd64 shared-mime-info amd64 1.7-1 [416 kB] Get:62 http://ftpmaster.internal/ubuntu zesty/main amd64 hicolor-icon-theme all 0.15-1 [8378 B] Get:63 http://ftpmaster.internal/ubuntu zesty/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B] Get:64 http://ftpmaster.internal/ubuntu zesty/main amd64 libtiff5 amd64 4.0.6-2 [145 kB] Get:65 http://ftpmaster.internal/ubuntu zesty/main amd64 libgdk-pixbuf2.0-common all 2.34.0-1ubuntu2 [10.4 kB] Get:66 http://ftpmaster.internal/ubuntu zesty/main amd64 libgdk-pixbuf2.0-0 amd64 2.34.0-1ubuntu2 [159 kB] Get:67 http://ftpmaster.internal/ubuntu zesty/main amd64 gtk-update-icon-cache amd64 3.22.2-0ubuntu1 [27.5 kB] Get:68 http://ftpmaster.internal/ubuntu zesty/main amd64 libpixman-1-0 amd64 0.33.6-1 [231 kB] Get:69 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-render0 amd64 1.11.1-1ubuntu1 [11.4 kB] Get:70 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-shm0 amd64 1.11.1-1ubuntu1 [5588 B] Get:71 http://ftpmaster.internal/ubuntu zesty/main amd64 libcairo2 amd64 1.14.6-1build1 [555 kB] Get:72 http://ftpmaster.internal/ubuntu zesty/main amd64 libcroco3 amd64 0.6.11-1 [81.6 kB] Get:73 http://ftpmaster.internal/ubuntu zesty/main amd64 libthai-data all 0.1.25-1 [131 kB] Get:74 http://ftpmaster.internal/ubuntu zesty/main amd64 libdatrie1 amd64 0.2.10-2 [17.3 kB] Get:75 http://ftpmaster.internal/ubuntu zesty/main amd64 libthai0 amd64 0.1.25-1 [17.6 kB] Get:76 http://ftpmaster.internal/ubuntu zesty/main amd64 libpango-1.0-0 amd64 1.40.3-3 [149 kB] Get:77 http://ftpmaster.internal/ubuntu zesty/main amd64 libgraphite2-3 amd64 1.3.8-1ubuntu1 [71.2 kB] Get:78 http://ftpmaster.internal/ubuntu zesty/main amd64 libharfbuzz0b amd64 1.2.7-1 [180 kB] Get:79 http://ftpmaster.internal/ubuntu zesty/main amd64 libpangoft2-1.0-0 amd64 1.40.3-3 [32.2 kB] Get:80 http://ftpmaster.internal/ubuntu zesty/main amd64 libpangocairo-1.0-0 amd64 1.40.3-3 [19.7 kB] Get:81 http://ftpmaster.internal/ubuntu zesty/main amd64 librsvg2-2 amd64 2.40.16-1 [93.9 kB] Get:82 http://ftpmaster.internal/ubuntu zesty/main amd64 librsvg2-common amd64 2.40.16-1 [4968 B] Get:83 http://ftpmaster.internal/ubuntu zesty/main amd64 humanity-icon-theme all 0.6.11 [1288 kB] Get:84 http://ftpmaster.internal/ubuntu zesty/main amd64 ubuntu-mono all 16.10+17.04.20161024-0ubuntu1 [160 kB] Get:85 http://ftpmaster.internal/ubuntu zesty/main amd64 adwaita-icon-theme all 3.20-3ubuntu2 [3430 kB] Get:86 http://ftpmaster.internal/ubuntu zesty/main amd64 libsigsegv2 amd64 2.10-5 [14.1 kB] Get:87 http://ftpmaster.internal/ubuntu zesty/main amd64 m4 amd64 1.4.17-5 [195 kB] Get:88 http://ftpmaster.internal/ubuntu zesty/main amd64 autoconf all 2.69-10 [321 kB] Get:89 http://ftpmaster.internal/ubuntu zesty/main amd64 autotools-dev all 20160430.1 [39.6 kB] Get:90 http://ftpmaster.internal/ubuntu zesty/main amd64 automake all 1:1.15-4ubuntu1 [510 kB] Get:91 http://ftpmaster.internal/ubuntu zesty/main amd64 autopoint all 0.19.8.1-1ubuntu2 [412 kB] Get:92 http://ftpmaster.internal/ubuntu zesty/main amd64 libtool all 2.4.6-1 [194 kB] Get:93 http://ftpmaster.internal/ubuntu zesty/main amd64 dh-autoreconf all 12 [15.8 kB] Get:94 http://ftpmaster.internal/ubuntu zesty/main amd64 libarchive-zip-perl all 1.59-1 [84.0 kB] Get:95 http://ftpmaster.internal/ubuntu zesty/main amd64 libfile-stripnondeterminism-perl all 0.028-1 [12.5 kB] Get:96 http://ftpmaster.internal/ubuntu zesty/main amd64 libtimedate-perl all 2.3000-2 [37.5 kB] Get:97 http://ftpmaster.internal/ubuntu zesty/main amd64 dh-strip-nondeterminism all 0.028-1 [4820 B] Get:98 http://ftpmaster.internal/ubuntu zesty/main amd64 gettext amd64 0.19.8.1-1ubuntu2 [1083 kB] Get:99 http://ftpmaster.internal/ubuntu zesty/main amd64 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:100 http://ftpmaster.internal/ubuntu zesty/main amd64 po-debconf all 1.0.19 [234 kB] Get:101 http://ftpmaster.internal/ubuntu zesty/main amd64 debhelper all 10.2.2ubuntu1 [742 kB] Get:102 http://ftpmaster.internal/ubuntu zesty/main amd64 libatk1.0-data all 2.20.0-1 [17.5 kB] Get:103 http://ftpmaster.internal/ubuntu zesty/main amd64 libatk1.0-0 amd64 2.20.0-1 [57.6 kB] Get:104 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-atk-1.0 amd64 2.20.0-1 [17.6 kB] Get:105 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-freedesktop amd64 1.50.0-1ubuntu2 [5654 B] Get:106 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.34.0-1ubuntu2 [8106 B] Get:107 http://ftpmaster.internal/ubuntu zesty/main amd64 libgtk2.0-common all 2.24.30-4ubuntu2 [123 kB] Get:108 http://ftpmaster.internal/ubuntu zesty/main amd64 libpangoxft-1.0-0 amd64 1.40.3-3 [14.4 kB] Get:109 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-pango-1.0 amd64 1.40.3-3 [21.4 kB] Get:110 http://ftpmaster.internal/ubuntu zesty/main amd64 libavahi-common-data amd64 0.6.32-1ubuntu1 [22.0 kB] Get:111 http://ftpmaster.internal/ubuntu zesty/main amd64 libavahi-common3 amd64 0.6.32-1ubuntu1 [21.6 kB] Get:112 http://ftpmaster.internal/ubuntu zesty/main amd64 libavahi-client3 amd64 0.6.32-1ubuntu1 [25.1 kB] Get:113 http://ftpmaster.internal/ubuntu zesty/main amd64 libcups2 amd64 2.2.0-2build1 [203 kB] Get:114 http://ftpmaster.internal/ubuntu zesty/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB] Get:115 http://ftpmaster.internal/ubuntu zesty/main amd64 libxrandr2 amd64 2:1.5.0-1 [17.6 kB] Get:116 http://ftpmaster.internal/ubuntu zesty/main amd64 libgtk2.0-0 amd64 2.24.30-4ubuntu2 [1770 kB] Get:117 http://ftpmaster.internal/ubuntu zesty/main amd64 gir1.2-gtk-2.0 amd64 2.24.30-4ubuntu2 [172 kB] Get:118 http://ftpmaster.internal/ubuntu zesty/main amd64 icu-devtools amd64 57.1-4 [169 kB] Get:119 http://ftpmaster.internal/ubuntu zesty/main amd64 pkg-config amd64 0.29.1-0ubuntu1 [45.0 kB] Get:120 http://ftpmaster.internal/ubuntu zesty/main amd64 libglib2.0-bin amd64 2.50.0-1 [39.5 kB] Get:121 http://ftpmaster.internal/ubuntu zesty/main amd64 libpcre16-3 amd64 2:8.39-2 [149 kB] Get:122 http://ftpmaster.internal/ubuntu zesty/main amd64 libpcre32-3 amd64 2:8.39-2 [140 kB] Get:123 http://ftpmaster.internal/ubuntu zesty/main amd64 libpcre3-dev amd64 2:8.39-2 [535 kB] Get:124 http://ftpmaster.internal/ubuntu zesty/main amd64 zlib1g-dev amd64 1:1.2.8.dfsg-2ubuntu5 [168 kB] Get:125 http://ftpmaster.internal/ubuntu zesty/main amd64 libglib2.0-dev amd64 2.50.0-1 [1431 kB] Get:126 http://ftpmaster.internal/ubuntu zesty/main amd64 libatk1.0-dev amd64 2.20.0-1 [79.0 kB] Get:127 http://ftpmaster.internal/ubuntu zesty/main amd64 libcairo-gobject2 amd64 1.14.6-1build1 [17.2 kB] Get:128 http://ftpmaster.internal/ubuntu zesty/main amd64 libcairo-script-interpreter2 amd64 1.14.6-1build1 [54.3 kB] Get:129 http://ftpmaster.internal/ubuntu zesty/main amd64 libexpat1-dev amd64 2.2.0-1 [120 kB] Get:130 http://ftpmaster.internal/ubuntu zesty/main amd64 libpng-dev amd64 1.6.25-1 [142 kB] Get:131 http://ftpmaster.internal/ubuntu zesty/main amd64 libfreetype6-dev amd64 2.6.3-3ubuntu1 [5185 kB] Get:132 http://ftpmaster.internal/ubuntu zesty/main amd64 libfontconfig1-dev amd64 2.11.94-0ubuntu2 [659 kB] Get:133 http://ftpmaster.internal/ubuntu zesty/main amd64 xorg-sgml-doctools all 1:1.11-1 [12.9 kB] Get:134 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-core-dev all 7.0.29-1ubuntu1 [253 kB] Get:135 http://ftpmaster.internal/ubuntu zesty/main amd64 libxau-dev amd64 1:1.0.8-1 [11.1 kB] Get:136 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdmcp-dev amd64 1:1.1.2-1.1 [25.1 kB] Get:137 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-input-dev all 2.3.2-1 [118 kB] Get:138 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-kb-dev all 1.0.7-1 [226 kB] Get:139 http://ftpmaster.internal/ubuntu zesty/main amd64 xtrans-dev all 1.3.5-1 [70.5 kB] Get:140 http://ftpmaster.internal/ubuntu zesty/main amd64 libpthread-stubs0-dev amd64 0.3-4 [4068 B] Get:141 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb1-dev amd64 1.11.1-1ubuntu1 [74.2 kB] Get:142 http://ftpmaster.internal/ubuntu zesty/main amd64 libx11-dev amd64 2:1.6.3-1ubuntu3 [641 kB] Get:143 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-render-dev all 2:0.11.1-2 [20.1 kB] Get:144 http://ftpmaster.internal/ubuntu zesty/main amd64 libxrender-dev amd64 1:0.9.9-2 [24.7 kB] Get:145 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-xext-dev all 7.3.0-1 [212 kB] Get:146 http://ftpmaster.internal/ubuntu zesty/main amd64 libxext-dev amd64 2:1.3.3-1 [82.1 kB] Get:147 http://ftpmaster.internal/ubuntu zesty/main amd64 libice-dev amd64 2:1.0.9-1 [44.9 kB] Get:148 http://ftpmaster.internal/ubuntu zesty/main amd64 libsm-dev amd64 2:1.2.2-1 [16.2 kB] Get:149 http://ftpmaster.internal/ubuntu zesty/main amd64 libpixman-1-dev amd64 0.33.6-1 [248 kB] Get:150 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-render0-dev amd64 1.11.1-1ubuntu1 [15.3 kB] Get:151 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcb-shm0-dev amd64 1.11.1-1ubuntu1 [6604 B] Get:152 http://ftpmaster.internal/ubuntu zesty/main amd64 libcairo2-dev amd64 1.14.6-1build1 [601 kB] Get:153 http://ftpmaster.internal/ubuntu zesty/main amd64 libcurl4-gnutls-dev amd64 7.50.1-1ubuntu1 [263 kB] Get:154 http://ftpmaster.internal/ubuntu zesty/main amd64 libnl-3-200 amd64 3.2.27-1 [52.1 kB] Get:155 http://ftpmaster.internal/ubuntu zesty/main amd64 libnl-route-3-200 amd64 3.2.27-1 [124 kB] Get:156 http://ftpmaster.internal/ubuntu zesty/main amd64 libibverbs1 amd64 1.2.0-2ubuntu1 [29.3 kB] Get:157 http://ftpmaster.internal/ubuntu zesty/universe amd64 libpsm-infinipath1 amd64 3.3+19.g67c0807.open-3 [170 kB] Get:158 http://ftpmaster.internal/ubuntu zesty/main amd64 librdmacm1 amd64 1.1.0-2 [48.9 kB] Get:159 http://ftpmaster.internal/ubuntu zesty/universe amd64 libfabric1 amd64 1.3.0-2 [199 kB] Get:160 http://ftpmaster.internal/ubuntu zesty/main amd64 libgdk-pixbuf2.0-dev amd64 2.34.0-1ubuntu2 [44.3 kB] Get:161 http://ftpmaster.internal/ubuntu zesty/main amd64 libgraphite2-dev amd64 1.3.8-1ubuntu1 [14.6 kB] Get:162 http://ftpmaster.internal/ubuntu zesty/main amd64 libharfbuzz-icu0 amd64 1.2.7-1 [5240 B] Get:163 http://ftpmaster.internal/ubuntu zesty/main amd64 libharfbuzz-gobject0 amd64 1.2.7-1 [10.9 kB] Get:164 http://ftpmaster.internal/ubuntu zesty/main amd64 libicu-dev amd64 57.1-4 [16.4 MB] Get:165 http://ftpmaster.internal/ubuntu zesty/main amd64 libharfbuzz-dev amd64 1.2.7-1 [241 kB] Get:166 http://ftpmaster.internal/ubuntu zesty/main amd64 libxft-dev amd64 2.3.2-1 [45.7 kB] Get:167 http://ftpmaster.internal/ubuntu zesty/main amd64 libpango1.0-dev amd64 1.40.3-3 [283 kB] Get:168 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-xinerama-dev all 1.2.1-2 [4966 B] Get:169 http://ftpmaster.internal/ubuntu zesty/main amd64 libxinerama-dev amd64 2:1.1.3-1 [8404 B] Get:170 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-fixes-dev all 1:5.0-2ubuntu2 [14.2 kB] Get:171 http://ftpmaster.internal/ubuntu zesty/main amd64 libxfixes-dev amd64 1:5.0.2-1 [11.0 kB] Get:172 http://ftpmaster.internal/ubuntu zesty/main amd64 libxi-dev amd64 2:1.7.6-1 [184 kB] Get:173 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-randr-dev all 1.5.0-1 [33.7 kB] Get:174 http://ftpmaster.internal/ubuntu zesty/main amd64 libxrandr-dev amd64 2:1.5.0-1 [23.7 kB] Get:175 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcursor-dev amd64 1:1.1.14-1 [29.8 kB] Get:176 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-composite-dev all 1:0.4.2-2 [10.5 kB] Get:177 http://ftpmaster.internal/ubuntu zesty/main amd64 libxcomposite-dev amd64 1:0.4.4-1 [9954 B] Get:178 http://ftpmaster.internal/ubuntu zesty/main amd64 x11proto-damage-dev all 1:1.2.1-2 [8286 B] Get:179 http://ftpmaster.internal/ubuntu zesty/main amd64 libxdamage-dev amd64 1:1.1.4-2 [5028 B] Get:180 http://ftpmaster.internal/ubuntu zesty/main amd64 libxml2-utils amd64 2.9.4+dfsg1-2 [35.1 kB] Get:181 http://ftpmaster.internal/ubuntu zesty/main amd64 libgtk2.0-dev amd64 2.24.30-4ubuntu2 [2653 kB] Get:182 http://ftpmaster.internal/ubuntu zesty/main amd64 libltdl7 amd64 2.4.6-1 [38.6 kB] Get:183 http://ftpmaster.internal/ubuntu zesty/main amd64 libltdl-dev amd64 2.4.6-1 [162 kB] Get:184 http://ftpmaster.internal/ubuntu zesty/main amd64 libpciaccess0 amd64 0.13.4-1 [18.1 kB] Get:185 http://ftpmaster.internal/ubuntu zesty/main amd64 libsqlite3-dev amd64 3.14.1-1build1 [607 kB] Get:186 http://ftpmaster.internal/ubuntu zesty/main amd64 libssl-dev amd64 1.0.2g-1ubuntu9 [1352 kB] Get:187 http://ftpmaster.internal/ubuntu zesty/universe amd64 openmpi-common all 2.0.1-7 [134 kB] Get:188 http://ftpmaster.internal/ubuntu zesty/universe amd64 libhwloc5 amd64 1.11.4-1 [101 kB] Get:189 http://ftpmaster.internal/ubuntu zesty/main amd64 libnuma-dev amd64 2.0.11-1ubuntu2 [32.1 kB] Get:190 http://ftpmaster.internal/ubuntu zesty/universe amd64 libhwloc-dev amd64 1.11.4-1 [162 kB] Get:191 http://ftpmaster.internal/ubuntu zesty/main amd64 ocl-icd-libopencl1 amd64 2.2.9-2 [30.1 kB] Get:192 http://ftpmaster.internal/ubuntu zesty/universe amd64 libhwloc-plugins amd64 1.11.4-1 [12.2 kB] Get:193 http://ftpmaster.internal/ubuntu zesty/main amd64 libibverbs-dev amd64 1.2.0-2ubuntu1 [84.2 kB] Get:194 http://ftpmaster.internal/ubuntu zesty/universe amd64 libopenmpi2 amd64 2.0.1-7 [1882 kB] Get:195 http://ftpmaster.internal/ubuntu zesty/universe amd64 libopenmpi-dev amd64 2.0.1-7 [905 kB] Get:196 http://ftpmaster.internal/ubuntu zesty/universe amd64 mpi-default-dev amd64 1.7 [3878 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 76.9 MB in 4s (16.2 MB/s) Selecting previously unselected package libpython3.5-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 14096 files and directories currently installed.) Preparing to unpack .../0-libpython3.5-minimal_3.5.2-6_amd64.deb ... Unpacking libpython3.5-minimal:amd64 (3.5.2-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../1-libexpat1_2.2.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.0-1) ... Selecting previously unselected package python3.5-minimal. 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Setting up fonts-dejavu-core (2.37-1) ... Setting up libnuma1:amd64 (2.0.11-1ubuntu2) ... Setting up libelf1:amd64 (0.166-2ubuntu1) ... Setting up groff-base (1.22.3-8) ... Setting up libglib2.0-0:amd64 (2.50.0-1) ... No schema files found: doing nothing. Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libgdk-pixbuf2.0-common (2.34.0-1ubuntu2) ... Setting up libdatrie1:amd64 (0.2.10-2) ... Setting up gettext-base (0.19.8.1-1ubuntu2) ... Setting up cmake-data (3.6.2-2ubuntu1) ... Setting up libjpeg-turbo8:amd64 (1.5.0-0ubuntu1) ... Setting up libpipeline1:amd64 (1.4.1-2) ... Setting up x11proto-kb-dev (1.0.7-1) ... Setting up m4 (1.4.17-5) ... Setting up libicu57:amd64 (57.1-4) ... Setting up ucf (3.0036) ... Setting up libgirepository-1.0-1:amd64 (1.50.0-1ubuntu2) ... Setting up libxml2:amd64 (2.9.4+dfsg1-2) ... Setting up libfreetype6:amd64 (2.6.3-3ubuntu1) ... Setting up libmagic1:amd64 (1:5.28-2ubuntu1) ... Setting up libgraphite2-3:amd64 (1.3.8-1ubuntu1) ... Setting up libcroco3:amd64 (0.6.11-1) ... Setting up libpsm-infinipath1 (3.3+19.g67c0807.open-3) ... Setting up libatk1.0-data (2.20.0-1) ... Setting up pkg-config (0.29.1-0ubuntu1) ... Setting up libpixman-1-0:amd64 (0.33.6-1) ... Setting up xtrans-dev (1.3.5-1) ... Setting up gir1.2-glib-2.0:amd64 (1.50.0-1ubuntu2) ... Setting up libglib2.0-data (2.50.0-1) ... Setting up openmpi-common (2.0.1-7) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Setting up x11proto-xinerama-dev (1.2.1-2) ... Setting up autotools-dev (20160430.1) ... Setting up libunistring0:amd64 (0.9.3-5.2ubuntu1) ... Setting up libpixman-1-dev (0.33.6-1) ... Setting up libatk1.0-0:amd64 (2.20.0-1) ... Setting up x11proto-randr-dev (1.5.0-1) ... Processing triggers for systemd (231-10) ... Setting up libltdl7:amd64 (2.4.6-1) ... Setting up libexpat1-dev:amd64 (2.2.0-1) ... Setting up libpciaccess0:amd64 (0.13.4-1) ... Setting up shared-mime-info (1.7-1) ... Setting up libpcrecpp0v5:amd64 (2:8.39-2) ... Setting up libpcre32-3:amd64 (2:8.39-2) ... Setting up icu-devtools (57.1-4) ... Setting up libpcre16-3:amd64 (2:8.39-2) ... Setting up libthai-data (0.1.25-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-1.1) ... Setting up libnuma-dev:amd64 (2.0.11-1ubuntu2) ... Setting up ocl-icd-libopencl1:amd64 (2.2.9-2) ... Setting up bsdmainutils (9.0.6ubuntu3) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libnl-3-200:amd64 (3.2.27-1) ... Setting up x11-common (1:7.7+16ubuntu2) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Setting up hicolor-icon-theme (0.15-1) ... Setting up libglib2.0-bin (2.50.0-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.50.1-1ubuntu1) ... Setting up libgraphite2-dev (1.3.8-1ubuntu1) ... Setting up libx11-data (2:1.6.3-1ubuntu3) ... Setting up libxau6:amd64 (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-1ubuntu2) ... Setting up libmpdec2:amd64 (2.4.2-1) ... Setting up libdbus-1-3:amd64 (1.10.10-1ubuntu2) ... Setting up liblzo2-2:amd64 (2.08-1.2) ... Setting up libavahi-common-data:amd64 (0.6.32-1ubuntu1) ... Setting up zlib1g-dev:amd64 (1:1.2.8.dfsg-2ubuntu5) ... Setting up libfile-stripnondeterminism-perl (0.028-1) ... Setting up libjpeg8:amd64 (8c-2ubuntu8) ... Setting up libjsoncpp1:amd64 (1.7.2-1) ... Setting up libpcre3-dev:amd64 (2:8.39-2) ... Setting up gir1.2-atk-1.0 (2.20.0-1) ... Setting up fontconfig-config (2.11.94-0ubuntu2) ... Setting up x11proto-core-dev (7.0.29-1ubuntu1) ... Setting up libltdl-dev:amd64 (2.4.6-1) ... Setting up gettext (0.19.8.1-1ubuntu2) ... Setting up libarchive13:amd64 (3.2.1-2) ... Setting up gir1.2-freedesktop:amd64 (1.50.0-1ubuntu2) ... Setting up libssl-dev:amd64 (1.0.2g-1ubuntu9) ... Setting up libpython3.5-stdlib:amd64 (3.5.2-6) ... Setting up libxml2-utils (2.9.4+dfsg1-2) ... Setting up libharfbuzz0b:amd64 (1.2.7-1) ... Setting up libtiff5:amd64 (4.0.6-2) ... Setting up libxau-dev:amd64 (1:1.0.8-1) ... Setting up libnl-route-3-200:amd64 (3.2.27-1) ... Setting up autoconf (2.69-10) ... Setting up libthai0:amd64 (0.1.25-1) ... Setting up libicu-dev (57.1-4) ... Setting up file (1:5.28-2ubuntu1) ... Setting up libhwloc5:amd64 (1.11.4-1) ... Setting up libhwloc-plugins (1.11.4-1) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-1.1) ... Setting up automake (1:1.15-4ubuntu1) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up libice6:amd64 (2:1.0.9-1) ... Setting up man-db (2.7.5-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:amd64 (0.6.32-1ubuntu1) ... Setting up libpng-dev:amd64 (1.6.25-1) ... Setting up x11proto-render-dev (2:0.11.1-2) ... Setting up cmake (3.6.2-2ubuntu1) ... Setting up libxcb1:amd64 (1.11.1-1ubuntu1) ... Setting up x11proto-input-dev (2.3.2-1) ... Setting up libharfbuzz-gobject0:amd64 (1.2.7-1) ... Setting up libtool (2.4.6-1) ... Setting up python3.5 (3.5.2-6) ... Setting up libpython3-stdlib:amd64 (3.5.1-4) ... Setting up libibverbs1 (1.2.0-2ubuntu1) ... Setting up libfontconfig1:amd64 (2.11.94-0ubuntu2) ... Setting up libsm6:amd64 (2:1.2.2-1) ... Setting up libxcb-render0:amd64 (1.11.1-1ubuntu1) ... Setting up libharfbuzz-icu0:amd64 (1.2.7-1) ... Setting up po-debconf (1.0.19) ... Setting up libhwloc-dev:amd64 (1.11.4-1) ... Setting up libx11-6:amd64 (2:1.6.3-1ubuntu3) ... Setting up librdmacm1 (1.1.0-2) ... Setting up x11proto-xext-dev (7.3.0-1) ... Setting up libfreetype6-dev:amd64 (2.6.3-3ubuntu1) ... Setting up libice-dev:amd64 (2:1.0.9-1) ... Setting up libxcomposite1:amd64 (1:0.4.4-1) ... Setting up libxcb-shm0:amd64 (1.11.1-1ubuntu1) ... Setting up libxrender1:amd64 (1:0.9.9-2) ... Setting up libxcb1-dev:amd64 (1.11.1-1ubuntu1) ... Setting up libavahi-client3:amd64 (0.6.32-1ubuntu1) ... Setting up libx11-dev:amd64 (2:1.6.3-1ubuntu3) ... Setting up libxft2:amd64 (2.3.2-1) ... Setting up libibverbs-dev (1.2.0-2ubuntu1) ... Setting up fontconfig (2.11.94-0ubuntu2) ... Regenerating fonts cache... done. Setting up libcups2:amd64 (2.2.0-2build1) ... Setting up libfontconfig1-dev:amd64 (2.11.94-0ubuntu2) ... Setting up libsm-dev:amd64 (2:1.2.2-1) ... Setting up libxdamage1:amd64 (1:1.1.4-2) ... Setting up libxext6:amd64 (2:1.3.3-1) ... Setting up libxfixes3:amd64 (1:5.0.2-1) ... Setting up libfabric1 (1.3.0-2) ... Setting up x11proto-fixes-dev (1:5.0-2ubuntu2) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.34.0-1ubuntu2) ... Setting up libxcb-shm0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up gir1.2-gdkpixbuf-2.0:amd64 (2.34.0-1ubuntu2) ... Setting up libxrender-dev:amd64 (1:0.9.9-2) ... Setting up libxcb-render0-dev:amd64 (1.11.1-1ubuntu1) ... Setting up x11proto-damage-dev (1:1.2.1-2) ... Setting up libxft-dev (2.3.2-1) ... Setting up gtk-update-icon-cache (3.22.2-0ubuntu1) ... Setting up libxcursor1:amd64 (1:1.1.14-1) ... Setting up libxext-dev:amd64 (2:1.3.3-1) ... Setting up libpango-1.0-0:amd64 (1.40.3-3) ... Setting up libopenmpi2 (2.0.1-7) ... Setting up libxfixes-dev:amd64 (1:5.0.2-1) ... Setting up x11proto-composite-dev (1:0.4.2-2) ... Setting up libxrandr2:amd64 (2:1.5.0-1) ... Setting up libxi6:amd64 (2:1.7.6-1) ... Setting up libcairo2:amd64 (1.14.6-1build1) ... Setting up libxinerama1:amd64 (2:1.1.3-1) ... Setting up libxcursor-dev:amd64 (1:1.1.14-1) ... Setting up libxrandr-dev:amd64 (2:1.5.0-1) ... Setting up libxcomposite-dev (1:0.4.4-1) ... Setting up libcairo-script-interpreter2:amd64 (1.14.6-1build1) ... Setting up libopenmpi-dev (2.0.1-7) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up libcairo-gobject2:amd64 (1.14.6-1build1) ... Setting up libxdamage-dev:amd64 (1:1.1.4-2) ... Setting up mpi-default-dev (1.7) ... Setting up libpangoft2-1.0-0:amd64 (1.40.3-3) ... Setting up libxinerama-dev:amd64 (2:1.1.3-1) ... Setting up libxi-dev (2:1.7.6-1) ... Setting up libpangoxft-1.0-0:amd64 (1.40.3-3) ... Setting up libpangocairo-1.0-0:amd64 (1.40.3-3) ... Setting up gir1.2-pango-1.0:amd64 (1.40.3-3) ... Setting up librsvg2-2:amd64 (2.40.16-1) ... Setting up librsvg2-common:amd64 (2.40.16-1) ... Setting up adwaita-icon-theme (3.20-3ubuntu2) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libgtk2.0-0:amd64 (2.24.30-4ubuntu2) ... Setting up dh-autoreconf (12) ... Setting up python3 (3.5.1-4) ... Setting up humanity-icon-theme (0.6.11) ... Setting up libglib2.0-dev (2.50.0-1) ... Setting up dh-strip-nondeterminism (0.028-1) ... Setting up libgdk-pixbuf2.0-dev (2.34.0-1ubuntu2) ... Setting up libharfbuzz-dev:amd64 (1.2.7-1) ... Setting up dh-python (2.20160818) ... Setting up gir1.2-gtk-2.0 (2.24.30-4ubuntu2) ... Setting up debhelper (10.2.2ubuntu1) ... Setting up libcairo2-dev (1.14.6-1build1) ... Setting up ubuntu-mono (16.10+17.04.20161024-0ubuntu1) ... Setting up libatk1.0-dev (2.20.0-1) ... Setting up libpango1.0-dev (1.40.3-3) ... Setting up libgtk2.0-dev (2.24.30-4ubuntu2) ... Setting up sbuild-build-depends-hyphy-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.24-3ubuntu1) ... Processing triggers for systemd (231-10) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.34.0-1ubuntu2) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-45-generic amd64 (x86_64) Toolchain package versions: binutils_2.27-9ubuntu1 dpkg-dev_1.18.10ubuntu1 g++-6_6.2.0-10ubuntu1 gcc-6_6.2.0-10ubuntu1 libc6-dev_2.24-3ubuntu1 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 linux-libc-dev_4.8.0-27.29 Package versions: adduser_3.113+nmu3ubuntu5 advancecomp_1.20-1 adwaita-icon-theme_3.20-3ubuntu2 apt_1.3.1 apt-transport-https_1.3.1 autoconf_2.69-10 automake_1:1.15-4ubuntu1 autopoint_0.19.8.1-1ubuntu2 autotools-dev_20160430.1 base-files_9.6ubuntu6 base-passwd_3.5.40 bash_4.3-15ubuntu1 binutils_2.27-9ubuntu1 bsdmainutils_9.0.6ubuntu3 bsdutils_1:2.28.2-1ubuntu1 build-essential_12.1ubuntu2 bzip2_1.0.6-8build1 ca-certificates_20160104ubuntu1 cmake_3.6.2-2ubuntu1 cmake-data_3.6.2-2ubuntu1 coreutils_8.25-2ubuntu2 cpp_4:6.1.1-1ubuntu2 cpp-6_6.2.0-10ubuntu1 dash_0.5.8-2.3ubuntu1 debconf_1.5.59ubuntu1 debhelper_10.2.2ubuntu1 debianutils_4.8 dh-autoreconf_12 dh-python_2.20160818 dh-strip-nondeterminism_0.028-1 diffutils_1:3.3-3 dmsetup_2:1.02.133-1ubuntu1 dpkg_1.18.10ubuntu1 dpkg-dev_1.18.10ubuntu1 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-1ubuntu2 file_1:5.28-2ubuntu1 findutils_4.6.0+git+20160703-2 fontconfig_2.11.94-0ubuntu2 fontconfig-config_2.11.94-0ubuntu2 fonts-dejavu-core_2.37-1 g++_4:6.1.1-1ubuntu2 g++-6_6.2.0-10ubuntu1 gcc_4:6.1.1-1ubuntu2 gcc-6_6.2.0-10ubuntu1 gcc-6-base_6.2.0-10ubuntu1 gettext_0.19.8.1-1ubuntu2 gettext-base_0.19.8.1-1ubuntu2 gir1.2-atk-1.0_2.20.0-1 gir1.2-freedesktop_1.50.0-1ubuntu2 gir1.2-gdkpixbuf-2.0_2.34.0-1ubuntu2 gir1.2-glib-2.0_1.50.0-1ubuntu2 gir1.2-gtk-2.0_2.24.30-4ubuntu2 gir1.2-pango-1.0_1.40.3-3 gnupg_2.1.15-1ubuntu6 gnupg-agent_2.1.15-1ubuntu6 gpgv_2.1.15-1ubuntu6 grep_2.25-6 groff-base_1.22.3-8 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libcairo2-dev_1.14.6-1build1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_6.2.0-10ubuntu1 libcilkrts5_6.2.0-10ubuntu1 libcomerr2_1.43.3-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.2-0ubuntu1 libcups2_2.2.0-2build1 libcurl3_7.50.1-1ubuntu1 libcurl3-gnutls_7.50.1-1ubuntu1 libcurl4-gnutls-dev_7.50.1-1ubuntu1 libdatrie1_0.2.10-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.10-1ubuntu2 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.133-1ubuntu1 libdpkg-perl_1.18.10ubuntu1 libelf1_0.166-2ubuntu1 libexpat1_2.2.0-1 libexpat1-dev_2.2.0-1 libfabric1_1.3.0-2 libfakeroot_1.21-1ubuntu2 libfdisk1_2.28.2-1ubuntu1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfontconfig1_2.11.94-0ubuntu2 libfontconfig1-dev_2.11.94-0ubuntu2 libfreetype6_2.6.3-3ubuntu1 libfreetype6-dev_2.6.3-3ubuntu1 libgcc-6-dev_6.2.0-10ubuntu1 libgcc1_1:6.2.0-10ubuntu1 libgcrypt20_1.7.2-2ubuntu1 libgdbm3_1.8.3-14 libgdk-pixbuf2.0-0_2.34.0-1ubuntu2 libgdk-pixbuf2.0-common_2.34.0-1ubuntu2 libgdk-pixbuf2.0-dev_2.34.0-1ubuntu2 libgirepository-1.0-1_1.50.0-1ubuntu2 libglib2.0-0_2.50.0-1 libglib2.0-bin_2.50.0-1 libglib2.0-data_2.50.0-1 libglib2.0-dev_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.3-5ubuntu1 libgomp1_6.2.0-10ubuntu1 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1ubuntu1 libgraphite2-dev_1.3.8-1ubuntu1 libgssapi-krb5-2_1.14.3+dfsg-2 libgssapi3-heimdal_1.7~git20160703+dfsg-1 libgtk2.0-0_2.24.30-4ubuntu2 libgtk2.0-common_2.24.30-4ubuntu2 libgtk2.0-dev_2.24.30-4ubuntu2 libharfbuzz-dev_1.2.7-1 libharfbuzz-gobject0_1.2.7-1 libharfbuzz-icu0_1.2.7-1 libharfbuzz0b_1.2.7-1 libhcrypto4-heimdal_1.7~git20160703+dfsg-1 libheimbase1-heimdal_1.7~git20160703+dfsg-1 libheimntlm0-heimdal_1.7~git20160703+dfsg-1 libhogweed4_3.2-1 libhwloc-dev_1.11.4-1 libhwloc-plugins_1.11.4-1 libhwloc5_1.11.4-1 libhx509-5-heimdal_1.7~git20160703+dfsg-1 libibverbs-dev_1.2.0-2ubuntu1 libibverbs1_1.2.0-2ubuntu1 libice-dev_2:1.0.9-1 libice6_2:1.0.9-1 libicu-dev_57.1-4 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-3ubuntu2 libisl15_0.17.1-1 libitm1_6.2.0-10ubuntu1 libjbig0_2.1-3.1 libjpeg-turbo8_1.5.0-0ubuntu1 libjpeg8_8c-2ubuntu8 libjsoncpp1_1.7.2-1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9ubuntu1 libkmod2_22-1.1ubuntu1 libkrb5-26-heimdal_1.7~git20160703+dfsg-1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.4-4 libldap-2.4-2_2.4.42+dfsg-2ubuntu5 liblockfile-bin_1.09-6ubuntu1 liblockfile1_1.09-6ubuntu1 liblsan0_6.2.0-10ubuntu1 libltdl-dev_2.4.6-1 libltdl7_2.4.6-1 liblz4-1_0.0~r131-2ubuntu2 liblzma5_5.2.2-1.2 liblzo2-2_2.08-1.2 libmagic1_1:5.28-2ubuntu1 libmount1_2.28.2-1ubuntu1 libmpc3_1.0.3-1 libmpdec2_2.4.2-1 libmpfr4_3.1.5-1 libmpx2_6.2.0-10ubuntu1 libncurses5_6.0+20160625-1ubuntu1 libncursesw5_6.0+20160625-1ubuntu1 libnettle6_3.2-1 libnl-3-200_3.2.27-1 libnl-route-3-200_3.2.27-1 libnpth0_1.2-3 libnuma-dev_2.0.11-1ubuntu2 libnuma1_2.0.11-1ubuntu2 libopenmpi-dev_2.0.1-7 libopenmpi2_2.0.1-7 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.2ubuntu2 libpam-modules-bin_1.1.8-3.2ubuntu2 libpam-runtime_1.1.8-3.2ubuntu2 libpam0g_1.1.8-3.2ubuntu2 libpango-1.0-0_1.40.3-3 libpango1.0-dev_1.40.3-3 libpangocairo-1.0-0_1.40.3-3 libpangoft2-1.0-0_1.40.3-3 libpangoxft-1.0-0_1.40.3-3 libpciaccess0_0.13.4-1 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.22_5.22.2-3 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpixman-1-0_0.33.6-1 libpixman-1-dev_0.33.6-1 libpng-dev_1.6.25-1 libpng16-16_1.6.25-1 libprocps6_2:3.3.12-1ubuntu2 libpsm-infinipath1_3.3+19.g67c0807.open-3 libpthread-stubs0-dev_0.3-4 libpython3-stdlib_3.5.1-4 libpython3.5-minimal_3.5.2-6 libpython3.5-stdlib_3.5.2-6 libquadmath0_6.2.0-10ubuntu1 librdmacm1_1.1.0-2 libreadline7_7.0-0ubuntu2 libroken18-heimdal_1.7~git20160703+dfsg-1 librsvg2-2_2.40.16-1 librsvg2-common_2.40.16-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2ubuntu2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-2.3ubuntu1 libsm-dev_2:1.2.2-1 libsm6_2:1.2.2-1 libsmartcols1_2.28.2-1ubuntu1 libsqlite3-0_3.14.1-1build1 libsqlite3-dev_3.14.1-1build1 libss2_1.43.3-1 libssl-dev_1.0.2g-1ubuntu9 libssl1.0.0_1.0.2g-1ubuntu9 libstdc++-6-dev_6.2.0-10ubuntu1 libstdc++6_6.2.0-10ubuntu1 libsystemd0_231-10 libtasn1-6_4.9-4 libthai-data_0.1.25-1 libthai0_0.1.25-1 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160625-1ubuntu1 libtool_2.4.6-1 libtsan0_6.2.0-10ubuntu1 libubsan0_6.2.0-10ubuntu1 libudev1_231-10 libunistring0_0.9.3-5.2ubuntu1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1ubuntu1 libwind0-heimdal_1.7~git20160703+dfsg-1 libx11-6_2:1.6.3-1ubuntu3 libx11-data_2:1.6.3-1ubuntu3 libx11-dev_2:1.6.3-1ubuntu3 libxau-dev_1:1.0.8-1 libxau6_1:1.0.8-1 libxcb-render0_1.11.1-1ubuntu1 libxcb-render0-dev_1.11.1-1ubuntu1 libxcb-shm0_1.11.1-1ubuntu1 libxcb-shm0-dev_1.11.1-1ubuntu1 libxcb1_1.11.1-1ubuntu1 libxcb1-dev_1.11.1-1ubuntu1 libxcomposite-dev_1:0.4.4-1 libxcomposite1_1:0.4.4-1 libxcursor-dev_1:1.1.14-1 libxcursor1_1:1.1.14-1 libxdamage-dev_1:1.1.4-2 libxdamage1_1:1.1.4-2 libxdmcp-dev_1:1.1.2-1.1 libxdmcp6_1:1.1.2-1.1 libxext-dev_2:1.3.3-1 libxext6_2:1.3.3-1 libxfixes-dev_1:5.0.2-1 libxfixes3_1:5.0.2-1 libxft-dev_2.3.2-1 libxft2_2.3.2-1 libxi-dev_2:1.7.6-1 libxi6_2:1.7.6-1 libxinerama-dev_2:1.1.3-1 libxinerama1_2:1.1.3-1 libxml2_2.9.4+dfsg1-2 libxml2-utils_2.9.4+dfsg1-2 libxrandr-dev_2:1.5.0-1 libxrandr2_2:1.5.0-1 libxrender-dev_1:0.9.9-2 libxrender1_1:0.9.9-2 linux-libc-dev_4.8.0-27.29 lockfile-progs_0.1.17 login_1:4.2-3.2ubuntu1 lsb-base_9.20160110ubuntu5 m4_1.4.17-5 make_4.1-9 man-db_2.7.5-1 mawk_1.3.3-17ubuntu2 mime-support_3.60ubuntu1 mount_2.28.2-1ubuntu1 mpi-default-dev_1.7 multiarch-support_2.24-3ubuntu1 ncurses-base_6.0+20160625-1ubuntu1 ncurses-bin_6.0+20160625-1ubuntu1 ocl-icd-libopencl1_2.2.9-2 openmpi-common_2.0.1-7 openssl_1.0.2g-1ubuntu9 optipng_0.7.6-1build1 passwd_1:4.2-3.2ubuntu1 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.22_5.22.2-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 pkg-config_0.29.1-0ubuntu1 pkg-create-dbgsym_0.72 pkgbinarymangler_131 po-debconf_1.0.19 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-1ubuntu2 python3_3.5.1-4 python3-minimal_3.5.1-4 python3.5_3.5.2-6 python3.5-minimal_3.5.2-6 readline-common_7.0-0ubuntu2 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-hyphy-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 shared-mime-info_1.7-1 systemd_231-10 systemd-sysv_231-10 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.8git1 tar_1.29b-1 tzdata_2016h-1 ubuntu-keyring_2016.10.27 ubuntu-mono_16.10+17.04.20161024-0ubuntu1 ucf_3.0036 util-linux_2.28.2-1ubuntu1 x11-common_1:7.7+16ubuntu2 x11proto-composite-dev_1:0.4.2-2 x11proto-core-dev_7.0.29-1ubuntu1 x11proto-damage-dev_1:1.2.1-2 x11proto-fixes-dev_1:5.0-2ubuntu2 x11proto-input-dev_2.3.2-1 x11proto-kb-dev_1.0.7-1 x11proto-randr-dev_1.5.0-1 x11proto-render-dev_2:0.11.1-2 x11proto-xext-dev_7.3.0-1 x11proto-xinerama-dev_1.2.1-2 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-2ubuntu5 zlib1g-dev_1:1.2.8.dfsg-2ubuntu5 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Fri Oct 14 06:12:16 2016 UTC gpgv: using RSA key gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.2.7+dfsg-1.dsc dpkg-source: info: extracting hyphy in hyphy-2.2.7+dfsg dpkg-source: info: unpacking hyphy_2.2.7+dfsg.orig.tar.xz dpkg-source: info: unpacking hyphy_2.2.7+dfsg-1.debian.tar.xz dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying drop_profiling_option.patch dpkg-source: info: applying remove_unneeded_test.patch dpkg-source: info: applying msse_option_only_if_available.patch dpkg-source: info: applying remove_arch_specific_flags.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/home/buildd LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd MAIL=/var/mail/buildd OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games PWD=/<>/hyphy-2.2.7+dfsg SHELL=/bin/sh SUDO_COMMAND=/usr/sbin/chroot /<> su buildd -s /bin/sh -c cd '/<>/hyphy-2.2.7+dfsg' && 'env' SUDO_GID=2501 SUDO_UID=2001 SUDO_USER=buildd TERM=unknown USER=buildd USERNAME=root dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.2.7+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build hyphy-2.2.7+dfsg dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_testdir -O--buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg' dh_auto_clean make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg' dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_testdir -O--buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr cmake .. -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DINSTALL_PREFIX=/usr -- The C compiler identification is GNU 6.2.0 -- The CXX compiler identification is GNU 6.2.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test HAVE_AVX_EXTENSIONS -- Performing Test HAVE_AVX_EXTENSIONS - Failed -- Performing Test HAVE_SSE3_EXTENSIONS -- Performing Test HAVE_SSE3_EXTENSIONS - Success -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found OpenMP: -fopenmp -- Found CURL: /usr/lib/x86_64-linux-gnu/libcurl.so (found version "7.50.1") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1") -- Checking for module 'sqlite3' -- Found sqlite3, version 3.14.1 -- Found SQLITE3: /usr/lib/x86_64-linux-gnu/libsqlite3.so -- Found PythonInterp: /usr/bin/python3.5 (found version "3.5.2") -- Looking for pthread.h -- Looking for pthread.h - found -- Looking for pthread_create -- Looking for pthread_create - not found -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for CL_VERSION_2_0 -- Looking for CL_VERSION_2_0 - not found -- Looking for CL_VERSION_1_2 -- Looking for CL_VERSION_1_2 - not found -- Looking for CL_VERSION_1_1 -- Looking for CL_VERSION_1_1 - not found -- Looking for CL_VERSION_1_0 -- Looking for CL_VERSION_1_0 - not found -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) -- Found MPI_C: /usr/lib/libmpi.so -- Found MPI_CXX: /usr/lib/libmpi_cxx.so;/usr/lib/libmpi.so -- Found GTK2_GTK: /usr/lib/x86_64-linux-gnu/libgtk-x11-2.0.so -- Configuring done WARNING: Target "hyphy_mp" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYMP" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYMPI" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. WARNING: Target "HYPHYGTK" has EXCLUDE_FROM_ALL set and will not be built by default but an install rule has been provided for it. CMake does not define behavior for this case. -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg' # no idea about the purpose of the dynamic library - executables are not simply linked against it dh_auto_build -- HYPHYGTK MP2 MPI GTEST # LIB make -j1 HYPHYGTK MP2 MPI GTEST make[2]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 HYPHYGTK make[3]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 28 make -f CMakeFiles/Makefile2 CMakeFiles/HYPHYGTK.dir/all make[4]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYGTK.dir/build.make CMakeFiles/HYPHYGTK.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/HYPHYGTK.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYGTK make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYGTK.dir/build.make CMakeFiles/HYPHYGTK.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [ 3%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformComponent.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformComponent.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformComponent.cpp [ 3%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformGraphicPane.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformGraphicPane.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformGraphicPane.cpp [ 3%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformUtils.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformUtils.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformUtils.cpp [ 7%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/HYPlatformWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:453:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/HYPlatformWindow.cpp:463:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] [ 7%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformButton.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformButton.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformButton.cpp [ 7%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformButtonBar.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformButtonBar.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformButtonBar.cpp [ 10%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformCheckBox.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformCheckBox.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformCheckBox.cpp [ 10%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformLabel.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformLabel.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformLabel.cpp [ 10%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformPullDown.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformPullDown.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformPullDown.cpp [ 10%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformSequencePane.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformSequencePane.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformSequencePane.cpp [ 14%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformTable.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformTable.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformTable.cpp [ 14%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformTextBox.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/Components/HYPlatformTextBox.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/Components/HYPlatformTextBox.cpp [ 14%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformBootsrapWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformBootsrapWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformBootsrapWindow.cpp [ 17%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:76:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformChartWindow.cpp:84:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] [ 17%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:131:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp: In member function ‘virtual void _HYConsoleWindow::_SetMenuBar()’: /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:176:85: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] GtkItemFactoryEntry aProcEntry = {NULL,NULL,NULL,0,""}; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformConsoleWindow.cpp:181:135: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] GtkItemFactoryEntry aProcEntry = {NULL,NULL,(GtkItemFactoryCallback)hyphy_menu_item_callback,1000+counter,""}; ^ [ 17%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformDBWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformDBWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDBWindow.cpp [ 21%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:116:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:122:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp: In member function ‘virtual void _HYDataPanel::_OmitSelectedSpecies(_SimpleList&)’: /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:635:161: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] GtkItemFactoryEntry anItem = {entryPath.sData, NULL, (GtkItemFactoryCallback)hyphy_menu_item_callback, HY_DATA_WIN32_MENU_BASE+idxShift+k, ""}; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp: In member function ‘virtual void _HYDataPanel::_RestoreOmittedSequence(long int)’: /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformDataPanel.cpp:665:42: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ [ 21%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformGWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformGWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformGWindow.cpp [ 21%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformModelWindow.cpp:59:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] [ 21%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformPWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformPWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformPWindow.cpp [ 25%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformParameterTable.cpp:74:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] [ 25%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformTWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformTWindow.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTWindow.cpp [ 25%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] }; ^ /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] /<>/hyphy-2.2.7+dfsg/src/gui/gtk/WindowClasses/HYPlatformTreePanel.cpp:113:1: warning: deprecated conversion from string constant to ‘gchar* {aka char*}’ [-Wwrite-strings] [ 28%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/mains/gtk.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/mains/gtk.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/mains/gtk.cpp /<>/hyphy-2.2.7+dfsg/src/mains/gtk.cpp:68:0: warning: "__HYPHYCURL__" redefined #define __HYPHYCURL__ :0:0: note: this is the location of the previous definition /<>/hyphy-2.2.7+dfsg/src/mains/gtk.cpp: In function ‘int main(int, char**)’: /<>/hyphy-2.2.7+dfsg/src/mains/gtk.cpp:271:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ [ 28%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/HYBaseGUI.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYGTK.dir/src/gui/HYBaseGUI.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/gui/HYBaseGUI.cpp [ 28%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/gui/HYChartWindow.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include 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CMakeFiles/HYPHYGTK.dir/src/core/baseobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/baseobj.cpp [ 60%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/batchlan.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/batchlan.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase25(_ExecutionList&, bool)’: /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp:3786:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (data->sData, 1, p, inputBuffer); ^ [ 60%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include 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-I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 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-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fstrict-aliasing -funroll-loops -o CMakeFiles/HYPHYGTK.dir/src/core/calcnode2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/calcnode2.cpp [ 67%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/category.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include 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/<>/hyphy-2.2.7+dfsg/src/core/formula.cpp [ 71%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/fstring.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 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/usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/simplelist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/simplelist.cpp [ 89%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/site.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/site.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/site.cpp [ 89%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/stack.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/stack.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/stack.cpp [ 89%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/strings.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/strings.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:71:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] _String compileDate = __DATE__, ^~~~~~~~ /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp: In constructor ‘_String::_String(FILE*)’: /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:267:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sData,1,sLength,F); ^ [ 92%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/trie.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/trie.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/trie.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/variable.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS 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-I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTK.dir/src/core/variable.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/variable.cpp [ 92%] Building CXX object CMakeFiles/HYPHYGTK.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -DGDK_PIXBUF_ENABLE_BACKEND -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__HYPHY_GTK__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 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/usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 MP2 make[3]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 14 make -f CMakeFiles/Makefile2 CMakeFiles/MP2.dir/all make[4]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/HYPHYMP.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMP make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYMP.dir/build.make CMakeFiles/HYPHYMP.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [ 7%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi 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/<>/hyphy-2.2.7+dfsg/src/core/_hyExecutionContext.cpp [ 7%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/alignment.cpp [ 7%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ 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-fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllist.cpp [ 14%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllistx.cpp [ 14%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllistxl.cpp [ 14%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/baseobj.cpp [ 21%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase25(_ExecutionList&, bool)’: /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp:3786:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (data->sData, 1, p, inputBuffer); ^ [ 21%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlan2.cpp [ 21%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlanhelpers.cpp [ 21%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ 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-fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/formula.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/formula.cpp [ 42%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/fstring.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/fstring.cpp [ 42%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp: In member function ‘virtual _Matrix* _LikelihoodFunction::Optimize()’: /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp:4666:144: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] snprintf (buffer, sizeof(buffer),"\nDiff: %g, Precision: %16.12g, termFactor: %d", maxSoFar-lastMaxValue, precision, termFactor); ^ [ 42%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 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-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/list.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/mathobj.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 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-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/nexus.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o 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-I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/operation.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/parser.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/parser2.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/polynoml.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/regex.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/sequence.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/simplelist.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/site.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/stack.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:71:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] _String compileDate = __DATE__, ^~~~~~~~ /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp: In constructor ‘_String::_String(FILE*)’: /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:267:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sData,1,sLength,F); ^ [ 78%] Building CXX object CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 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/<>/hyphy-2.2.7+dfsg/src/core/variablecontainer.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link 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-I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm.cpp [ 92%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -o CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm2.cpp [ 92%] Building CXX object CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses 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-I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/utils/hyphyunixutils.cpp [100%] Building CXX object CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHY_64__ -D__MP2__ -D__MP__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘_String getLibraryPath()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:150:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘long int DisplayListOfChoices()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:322:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:323:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:366:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘int main(int, char**)’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:584:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ [100%] Linking CXX executable HYPHYMP /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMP.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp CMakeFiles/HYPHYMP.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMP.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMP.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMP.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMP.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMP.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMP.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/category.cpp.o CMakeFiles/HYPHYMP.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMP.dir/src/core/error.cpp.o CMakeFiles/HYPHYMP.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMP.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMP.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMP.dir/src/core/list.cpp.o CMakeFiles/HYPHYMP.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMP.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMP.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMP.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMP.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMP.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMP.dir/src/core/regex.cpp.o CMakeFiles/HYPHYMP.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYMP.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMP.dir/src/core/site.cpp.o CMakeFiles/HYPHYMP.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMP.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMP.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMP.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMP.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMP.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMP.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMP.dir/src/mains/unix.cpp.o -o HYPHYMP -rdynamic -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target HYPHYMP make -f CMakeFiles/MP2.dir/build.make CMakeFiles/MP2.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/MP2.dir/DependInfo.cmake --color= Scanning dependencies of target MP2 make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/MP2.dir/build.make CMakeFiles/MP2.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/MP2.dir/build'. make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target MP2 make[4]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 MPI make[3]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 14 make -f CMakeFiles/Makefile2 CMakeFiles/MPI.dir/all make[4]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= Scanning dependencies of target HYPHYMPI make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [ 7%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/_hyExecutionContext.cpp [ 7%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/alignment.cpp [ 7%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllist.cpp [ 7%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllistx.cpp [ 14%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent 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/usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo 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-std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase25(_ExecutionList&, bool)’: /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp:3786:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (data->sData, 1, p, inputBuffer); ^ [ 21%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include 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CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlanruntime.cpp [ 28%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat 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-I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/category.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link 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-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/constant.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/error.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi 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CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/fisher_exact.cpp [ 35%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/formula.cpp [ 42%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/fstring.cpp [ 42%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp: In member function ‘virtual _Matrix* _LikelihoodFunction::Optimize()’: /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp:4666:144: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] snprintf (buffer, sizeof(buffer),"\nDiff: %g, Precision: %16.12g, termFactor: %d", maxSoFar-lastMaxValue, precision, termFactor); ^ [ 42%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/likefunc2.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/likefuncocl.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/list.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/mathobj.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include 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-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/matrix.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/nexus.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/operation.cpp [ 57%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/parser.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/parser2.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/polynoml.cpp [ 64%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/regex.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/regex.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/regex.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/sequence.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/sequence.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/sequence.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/simplelist.cpp [ 71%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/site.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/stack.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:71:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] _String compileDate = __DATE__, ^~~~~~~~ /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp: In constructor ‘_String::_String(FILE*)’: /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:267:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sData,1,sLength,F); ^ [ 78%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/trie.cpp [ 78%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/variable.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/variablecontainer.cpp [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp: In member function ‘void _BayesianGraphicalModel::SerializeBGMtoMPI(_String&)’: /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1639:168: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] snprintf (buf, sizeof(buf), "\"Node%d\",%d,%d,%d", node_id, (long)max_parents.lData[node_id], (long)prior_sample_size(node_id,0), num_levels.lData[node_id]); ^ /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1639:168: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1639:168: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1639:168: warning: format ‘%d’ expects argument of type ‘int’, but argument 7 has type ‘long int’ [-Wformat=] /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1645:96: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] prior_mean(node_id,0), prior_precision(node_id,0), prior_scale(node_id,0) ); ^ /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1645:96: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1645:96: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1657:86: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] snprintf (buf, sizeof(buf), "BGM_IMPUTE_MAXSTEPS = %d;\n", (long)impute_max_steps); ^ /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1659:81: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] snprintf (buf, sizeof(buf), "BGM_IMPUTE_BURNIN = %d;\n", (long)impute_burnin); ^ /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp:1661:87: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] snprintf (buf, sizeof(buf), "BGM_IMPUTE_SAMPLES = %d;\n", (long)impute_sample_size); ^ [ 85%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph2.cpp [ 92%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm.cpp [ 92%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm2.cpp [ 92%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/scfg.cpp [100%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/utils/hyphyunixutils.cpp [100%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__HYPHY_64__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘_String getLibraryPath()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:150:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘long int DisplayListOfChoices()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:322:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:323:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:366:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘int main(int, char**)’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:584:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ [100%] Linking CXX executable HYPHYMPI /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYMPI.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -Wl,-rpath -Wl,/usr//lib -Wl,-rpath -Wl,/usr/lib/openmpi/lib -Wl,--enable-new-dtags CMakeFiles/HYPHYMPI.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/category.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/constant.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/error.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/operation.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/regex.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYMPI.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYMPI.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYMPI.dir/src/mains/unix.cpp.o -o HYPHYMPI -rdynamic -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 -lmpi_cxx -lmpi make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target HYPHYMPI make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/MPI.dir/DependInfo.cmake --color= Scanning dependencies of target MPI make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/MPI.dir/build.make CMakeFiles/MPI.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/MPI.dir/build'. make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target MPI make[4]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/Makefile2 GTEST make[3]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 16 make -f CMakeFiles/Makefile2 CMakeFiles/GTEST.dir/all make[4]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f contrib/gtest-1.7.0/CMakeFiles/gtest.dir/build.make contrib/gtest-1.7.0/CMakeFiles/gtest.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0 /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/contrib/gtest-1.7.0 /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/contrib/gtest-1.7.0/CMakeFiles/gtest.dir/DependInfo.cmake --color= Scanning dependencies of target gtest make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f contrib/gtest-1.7.0/CMakeFiles/gtest.dir/build.make contrib/gtest-1.7.0/CMakeFiles/gtest.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [ 0%] Building CXX object contrib/gtest-1.7.0/CMakeFiles/gtest.dir/src/gtest-all.cc.o cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/contrib/gtest-1.7.0 && /usr/bin/c++ -D_SLKP_USE_SSE_INTRINSICS -D__HYPHYCURL__ -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0 -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wshadow -DGTEST_HAS_PTHREAD=1 -fexceptions -Wextra -Wno-unused-parameter -Wno-missing-field-initializers -o CMakeFiles/gtest.dir/src/gtest-all.cc.o -c /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/src/gtest-all.cc [ 6%] Linking CXX static library libgtest.a cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/contrib/gtest-1.7.0 && /usr/bin/cmake -P CMakeFiles/gtest.dir/cmake_clean_target.cmake cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/contrib/gtest-1.7.0 && /usr/bin/cmake -E cmake_link_script CMakeFiles/gtest.dir/link.txt --verbose=1 /usr/bin/ar qc libgtest.a 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-D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/_hyExecutionContext.cpp [ 12%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/alignment.cpp [ 12%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllist.cpp [ 18%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllistx.cpp [ 18%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/avllistxl.cpp [ 18%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/baseobj.cpp [ 18%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp: In member function ‘void _ElementaryCommand::ExecuteCase25(_ExecutionList&, bool)’: /<>/hyphy-2.2.7+dfsg/src/core/batchlan.cpp:3786:52: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (data->sData, 1, p, inputBuffer); ^ [ 25%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/batchlan2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include 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CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/formula.cpp [ 43%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/fstring.cpp [ 43%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp: In member function ‘virtual _Matrix* _LikelihoodFunction::Optimize()’: /<>/hyphy-2.2.7+dfsg/src/core/likefunc.cpp:4666:144: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] snprintf (buffer, sizeof(buffer),"\nDiff: %g, Precision: %16.12g, termFactor: %d", maxSoFar-lastMaxValue, precision, termFactor); ^ [ 43%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o /usr/bin/c++ 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-I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/mathobj.cpp [ 56%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include 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-I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/site.cpp [ 75%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 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-I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:71:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] _String compileDate = __DATE__, ^~~~~~~~ /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp: In constructor ‘_String::_String(FILE*)’: /<>/hyphy-2.2.7+dfsg/src/core/strings.cpp:267:34: warning: ignoring return value of ‘size_t fread(void*, size_t, size_t, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fread (sData,1,sLength,F); ^ [ 75%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi 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-I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -Wno-int-to-pointer-cast -Wno-conversion-null -Wno-error=narrowing -o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/core/variable.cpp [ 81%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include 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-I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bayesgraph.cpp [ 81%] Building CXX 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-I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm.cpp [ 87%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/bgm2.cpp [ 87%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/new/scfg.cpp [ 93%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/utils/hyphyunixutils.cpp [ 93%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o -c /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_FindTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:173:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_FindLongTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:189:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_FindBestTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:205:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_NextTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:223:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_PrevTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:242:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_FirstTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:259:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_LastTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:276:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_GetByIndexTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:292:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_toStrTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:363:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_RetrieveTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:378:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_ClearTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:393:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_InsertTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:408:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_HasDataTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:436:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_DeleteTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:451:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListTest_countitemsTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:465:28: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] al.Insert((BaseRef)i, 0, true, false); ^ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp: In member function ‘virtual void {anonymous}::AVLListXLTest_ClearTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_avllists.cpp:519:30: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast] alxl.Insert((BaseRef)i, 0, true, false); ^ [ 93%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o -c /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_list.cpp In file included from /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1929:0, from /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_list.cpp:42: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_list.cpp: In member function ‘virtual void {anonymous}::ListTest_EqualTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_list.cpp:187:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false,str_list.Equal(l2)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_list.cpp:189:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false,str_list.Equal(list)); ^~~~~~~~~ [100%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o -c /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp In file included from /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1929:0, from /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp:42: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp: In member function ‘virtual void {anonymous}::SimpleListTest__EqualTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp:217:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false,sl.Equal(sl3)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp:218:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false,sl.Equal(sl4)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp:219:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false,sl.Equal(sl5)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp: In member function ‘virtual void {anonymous}::SimpleListTest__NChooseKTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_simplelists.cpp:602:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, init_test); ^~~~~~~~~ [100%] Building CXX object CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o -c /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp In file included from /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1929:0, from /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:42: /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_ContainsSubstringTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:634:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test4.ContainsSubstring(substr4)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:639:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test5.ContainsSubstring(substr5)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_EqualsTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:688:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test2.Equal(r2)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_EqualWithWildCharTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:723:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test2.EqualWithWildChar(t, 'E')); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:726:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test3.EqualWithWildChar(t, 'B')); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:729:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test4.EqualWithWildChar(t, 'B')); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_GreaterTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:741:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test>t); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:747:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test2>t2); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_LessTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:761:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test2>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_containsTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:774:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, t2.contains(test2)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_beginswithTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:791:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test2.beginswith(t2, false)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:795:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test3.beginswith(t3, true)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:807:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test6.beginswith(t6, false)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_startswithTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:820:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result.startswith(substr)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:824:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result.startswith(substr)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_endswithTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:839:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result.endswith(r2, false)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:843:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result.endswith(r2)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:847:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result.endswith(r2)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_IsALiteralArgumentTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1017:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_IsValidIdentifierTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1037:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test_string.IsValidIdentifier(true)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1040:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test_string.IsValidIdentifier(true)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1043:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, test_string.IsValidIdentifier(false)); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_GreaterOpTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1327:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result>r2); ^~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp: In member function ‘virtual void {anonymous}::StringTest_GreaterEqualOpTest_Test::TestBody()’: /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/internal/gtest-internal.h:133:55: warning: converting ‘false’ to pointer type for argument 1 of ‘char testing::internal::IsNullLiteralHelper(testing::internal::Secret*)’ [-Wconversion-null] (sizeof(::testing::internal::IsNullLiteralHelper(x)) == 1) ^ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:77:52: note: in definition of macro ‘GTEST_ASSERT_’ if (const ::testing::AssertionResult gtest_ar = (expression)) \ ^~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest_pred_impl.h:162:3: note: in expansion of macro ‘GTEST_PRED_FORMAT2_’ GTEST_PRED_FORMAT2_(pred_format, v1, v2, GTEST_NONFATAL_FAILURE_) ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1978:3: note: in expansion of macro ‘EXPECT_PRED_FORMAT2’ EXPECT_PRED_FORMAT2(::testing::internal:: \ ^~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include/gtest/gtest.h:1979:32: note: in expansion of macro ‘GTEST_IS_NULL_LITERAL_’ EqHelper::Compare, \ ^~~~~~~~~~~~~~~~~~~~~~ /<>/hyphy-2.2.7+dfsg/tests/gtests/ut_strings.cpp:1353:5: note: in expansion of macro ‘EXPECT_EQ’ EXPECT_EQ(false, result>=r2); ^~~~~~~~~ [100%] Building CXX object CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/lib/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D_SLKP_USE_SSE_INTRINSICS -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYDEBUG__ -D__HYPHY_64__ -D__UNITTEST__ -D__UNIX__ -I/<>/hyphy-2.2.7+dfsg/src/core/include -I/<>/hyphy-2.2.7+dfsg/src/lib/Link -I/<>/hyphy-2.2.7+dfsg/src/new/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include -I/<>/hyphy-2.2.7+dfsg/src/gui/include/Components -I/<>/hyphy-2.2.7+dfsg/src/gui/include/WindowClasses -I/<>/hyphy-2.2.7+dfsg/contrib/gtest-1.7.0/include -I/<>/hyphy-2.2.7+dfsg/tests/gtests -I/usr/lib/openmpi/include/openmpi -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent -I/usr/lib/openmpi/include/openmpi/opal/mca/event/libevent2022/libevent/include -I/usr/lib/openmpi/include -I/usr/include/gtk-2.0 -I/usr/include/freetype2 -I/usr/include/x86_64-linux-gnu/freetype2 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/include/gdk-pixbuf-2.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/lib/x86_64-linux-gnu/gtk-2.0/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include -I/<>/hyphy-2.2.7+dfsg/src/gui/gtk/include/Components -I/Developer/Headers/FlatCarbon -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 -o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -c /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘_String getLibraryPath()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:150:24: warning: ignoring return value of ‘char* getcwd(char*, size_t)’, declared with attribute warn_unused_result [-Wunused-result] getcwd (curWd,4096); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp: In function ‘long int DisplayListOfChoices()’: /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:322:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:323:38: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ /<>/hyphy-2.2.7+dfsg/src/mains/unix.cpp:366:42: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result [-Wunused-result] fgets (buffer,2048,stdin); ^ [100%] Linking CXX executable HYPHYGTEST /usr/bin/cmake -E cmake_link_script CMakeFiles/HYPHYGTEST.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<>/hyphy-2.2.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -g -fsigned-char -O3 -std=gnu++98 -fno-strict-aliasing -fpermissive -msse3 -fopenmp -msse3 CMakeFiles/HYPHYGTEST.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/alignment.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistx.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/avllistxl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/baseobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlan2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/batchlanruntime.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/calcnode2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/category.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/constant.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/error.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fisher_exact.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/formula.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/fstring.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefunc2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/likefuncocl.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/list.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/mathobj.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/matrix.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/nexus.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/operation.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/parser2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/polynoml.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/regex.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/sequence.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/simplelist.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/site.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/stack.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/trie.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variable.cpp.o CMakeFiles/HYPHYGTEST.dir/src/core/variablecontainer.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bayesgraph2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/bgm2.cpp.o CMakeFiles/HYPHYGTEST.dir/src/new/scfg.cpp.o CMakeFiles/HYPHYGTEST.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_avllists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_list.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_simplelists.cpp.o CMakeFiles/HYPHYGTEST.dir/tests/gtests/ut_strings.cpp.o CMakeFiles/HYPHYGTEST.dir/src/mains/unix.cpp.o -o HYPHYGTEST -rdynamic -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 contrib/gtest-1.7.0/libgtest.a -lpthread make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target HYPHYGTEST make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/depend make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' cd /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/GTEST.dir/DependInfo.cmake --color= Scanning dependencies of target GTEST make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/GTEST.dir/build.make CMakeFiles/GTEST.dir/build make[5]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/GTEST.dir/build'. make[5]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' [100%] Built target GTEST make[4]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[2]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg' find obj-* -name HYPHYGTEST -exec \{\} \; [==========] Running 182 tests from 6 test cases. [----------] Global test environment set-up. [----------] 18 tests from AVLListTest [ RUN ] AVLListTest.FindTest [ OK ] AVLListTest.FindTest (0 ms) [ RUN ] AVLListTest.FindLongTest [ OK ] AVLListTest.FindLongTest (0 ms) [ RUN ] AVLListTest.FindBestTest [ OK ] AVLListTest.FindBestTest (0 ms) [ RUN ] AVLListTest.NextTest [ OK ] AVLListTest.NextTest (0 ms) [ RUN ] AVLListTest.PrevTest [ OK ] AVLListTest.PrevTest (0 ms) [ RUN ] AVLListTest.FirstTest [ OK ] AVLListTest.FirstTest (0 ms) [ RUN ] AVLListTest.LastTest [ OK ] AVLListTest.LastTest (0 ms) [ RUN ] AVLListTest.GetByIndexTest [ OK ] AVLListTest.GetByIndexTest (0 ms) [ RUN ] AVLListTest.ReorderListTest [ OK ] AVLListTest.ReorderListTest (0 ms) [ RUN ] AVLListTest.TraverserTest [ OK ] AVLListTest.TraverserTest (0 ms) [ RUN ] AVLListTest.toStrTest [ OK ] AVLListTest.toStrTest (0 ms) [ RUN ] AVLListTest.RetrieveTest [ OK ] AVLListTest.RetrieveTest (0 ms) [ RUN ] AVLListTest.ClearTest [ OK ] AVLListTest.ClearTest (0 ms) [ RUN ] AVLListTest.InsertTest [ OK ] AVLListTest.InsertTest (0 ms) [ RUN ] AVLListTest.InsertDataTest [ OK ] AVLListTest.InsertDataTest (0 ms) [ RUN ] AVLListTest.HasDataTest [ OK ] AVLListTest.HasDataTest (0 ms) [ RUN ] AVLListTest.DeleteTest [ OK ] AVLListTest.DeleteTest (0 ms) [ RUN ] AVLListTest.countitemsTest [ OK ] AVLListTest.countitemsTest (0 ms) [----------] 18 tests from AVLListTest (1 ms total) [----------] 4 tests from AVLListXLTest [ RUN ] AVLListXLTest.ClearTest [ OK ] AVLListXLTest.ClearTest (0 ms) [ RUN ] AVLListXLTest.InsertDataTest [ OK ] AVLListXLTest.InsertDataTest (0 ms) [ RUN ] AVLListXLTest.DeleteXtraTest [ OK ] AVLListXLTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXLTest.SetAndGetXtraTest [ OK ] AVLListXLTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXLTest (1 ms total) [----------] 4 tests from AVLListXTest [ RUN ] AVLListXTest.InsertDataTest [ OK ] AVLListXTest.InsertDataTest (0 ms) [ RUN ] AVLListXTest.DeleteXtraTest [ OK ] AVLListXTest.DeleteXtraTest (0 ms) [ RUN ] AVLListXTest.PopulateFromListTest [ OK ] AVLListXTest.PopulateFromListTest (0 ms) [ RUN ] AVLListXTest.SetAndGetXtraTest [ OK ] AVLListXTest.SetAndGetXtraTest (0 ms) [----------] 4 tests from AVLListXTest (0 ms total) [----------] 34 tests from ListTest [ RUN ] ListTest._NothingListTest [ OK ] ListTest._NothingListTest (0 ms) [ RUN ] ListTest._LengthConstructorListTest [ OK ] ListTest._LengthConstructorListTest (0 ms) [ RUN ] ListTest._StackCopyConstructorListTest [ OK ] ListTest._StackCopyConstructorListTest (0 ms) [ RUN ] ListTest._SubStrConstructorListTest [ OK ] ListTest._SubStrConstructorListTest (0 ms) [ RUN ] ListTest._DataConstructorListTest [ OK ] ListTest._DataConstructorListTest (0 ms) [ RUN ] ListTest.paranthesisTest [ OK ] ListTest.paranthesisTest (0 ms) [ RUN ] ListTest.EqualOpTest [ OK ] ListTest.EqualOpTest (0 ms) [ RUN ] ListTest.EqualTest [ OK ] ListTest.EqualTest (0 ms) [ RUN ] ListTest.AmpersandOpTest [ OK ] ListTest.AmpersandOpTest (0 ms) [ RUN ] ListTest.Ampersand2OpTest [ OK ] ListTest.Ampersand2OpTest (0 ms) [ RUN ] ListTest.DoubleAmpersandOpTest [ OK ] ListTest.DoubleAmpersandOpTest (0 ms) [ RUN ] ListTest.DoubleAmpersand2OpTest [ OK ] ListTest.DoubleAmpersand2OpTest (0 ms) [ RUN ] ListTest.DoubleLessOpTest [ OK ] ListTest.DoubleLessOpTest (0 ms) [ RUN ] ListTest.DoubleLess2OpTest [ OK ] ListTest.DoubleLess2OpTest (0 ms) [ RUN ] ListTest.AppendNewInstanceTest [ OK ] ListTest.AppendNewInstanceTest (0 ms) [ RUN ] ListTest.PlaceTest [ OK ] ListTest.PlaceTest (0 ms) [ RUN ] ListTest.InsertElementTest [ OK ] ListTest.InsertElementTest (0 ms) [ RUN ] ListTest.getStrTest [ OK ] ListTest.getStrTest (0 ms) [ RUN ] ListTest.makeDynamicTest [ OK ] ListTest.makeDynamicTest (0 ms) [ RUN ] ListTest.toFileStrTest [ OK ] ListTest.toFileStrTest (0 ms) [ RUN ] ListTest.bumpNInstTest [ OK ] ListTest.bumpNInstTest (0 ms) [ RUN ] ListTest.FindTest [ OK ] ListTest.FindTest (0 ms) [ RUN ] ListTest.FindStringTest [ OK ] ListTest.FindStringTest (0 ms) [ RUN ] ListTest.JoinTest [ OK ] ListTest.JoinTest (0 ms) [ RUN ] ListTest.BinaryFindTest [ OK ] ListTest.BinaryFindTest (0 ms) [ RUN ] ListTest.BinaryInsertTest [ OK ] ListTest.BinaryInsertTest (0 ms) [ RUN ] ListTest.CompareTest [ OK ] ListTest.CompareTest (0 ms) [ RUN ] ListTest.Compare2Test [ OK ] ListTest.Compare2Test (0 ms) [ RUN ] ListTest.FreeUpMemoryTest [ OK ] ListTest.FreeUpMemoryTest (0 ms) [ RUN ] ListTest.ClearTest [ OK ] ListTest.ClearTest (0 ms) [ RUN ] ListTest.DeleteTest [ OK ] ListTest.DeleteTest (0 ms) [ RUN ] ListTest.DeleteListTest [ OK ] ListTest.DeleteListTest (0 ms) [ RUN ] ListTest.ReplaceTest [ OK ] ListTest.ReplaceTest (0 ms) [ RUN ] ListTest.IntersectTest [ OK ] ListTest.IntersectTest (0 ms) [----------] 34 tests from ListTest (2 ms total) [----------] 45 tests from SimpleListTest [ RUN ] SimpleListTest._StackCopyConstructorListTest [ OK ] SimpleListTest._StackCopyConstructorListTest (0 ms) [ RUN ] SimpleListTest._PopulateTest [ OK ] SimpleListTest._PopulateTest (0 ms) [ RUN ] SimpleListTest._BracketOpTest [ OK ] SimpleListTest._BracketOpTest (0 ms) [ RUN ] SimpleListTest._ParenthOpTest [ OK ] SimpleListTest._ParenthOpTest (0 ms) [ RUN ] SimpleListTest._EqualOpTest [ OK ] SimpleListTest._EqualOpTest (0 ms) [ RUN ] SimpleListTest._DoubleLessOpTest [ OK ] SimpleListTest._DoubleLessOpTest (0 ms) [ RUN ] SimpleListTest._OffsetTest [ OK ] SimpleListTest._OffsetTest (0 ms) [ RUN ] SimpleListTest._ElementTest [ OK ] SimpleListTest._ElementTest (0 ms) [ RUN ] SimpleListTest._PopTest [ OK ] SimpleListTest._PopTest (0 ms) [ RUN ] SimpleListTest._countitemsTest [ OK ] SimpleListTest._countitemsTest (0 ms) [ RUN ] SimpleListTest._EqualTest [ OK ] SimpleListTest._EqualTest (0 ms) [ RUN ] SimpleListTest._MergeTest [ OK ] SimpleListTest._MergeTest (0 ms) [ RUN ] SimpleListTest.DoubleGreaterOpTest [ OK ] SimpleListTest.DoubleGreaterOpTest (0 ms) [ RUN ] SimpleListTest._ListToPartitionStringTest [ OK ] SimpleListTest._ListToPartitionStringTest (0 ms) [ RUN ] SimpleListTest._RequestSpaceTest [ OK ] SimpleListTest._RequestSpaceTest (0 ms) [ RUN ] SimpleListTest._toStrTest [ OK ] SimpleListTest._toStrTest (0 ms) [ RUN ] SimpleListTest._makeDynamicTest [ OK ] SimpleListTest._makeDynamicTest (0 ms) [ RUN ] SimpleListTest._MinTest [ OK ] SimpleListTest._MinTest (0 ms) [ RUN ] SimpleListTest._MaxTest [ OK ] SimpleListTest._MaxTest (0 ms) [ RUN ] SimpleListTest._ClearFormulasInListTest [ OK ] SimpleListTest._ClearFormulasInListTest (0 ms) [ RUN ] SimpleListTest._DebugVarListTest [ OK ] SimpleListTest._DebugVarListTest (0 ms) [ RUN ] SimpleListTest._CountingSortTest [ OK ] SimpleListTest._CountingSortTest (0 ms) [ RUN ] SimpleListTest._BinaryInsertTest [ OK ] SimpleListTest._BinaryInsertTest (0 ms) [ RUN ] SimpleListTest._FindTest [ OK ] SimpleListTest._FindTest (0 ms) [ RUN ] SimpleListTest._FindSteppingTest [ OK ] SimpleListTest._FindSteppingTest (0 ms) [ RUN ] SimpleListTest._FilterRangeTest [ OK ] SimpleListTest._FilterRangeTest (0 ms) [ RUN ] SimpleListTest._BinaryFindTest [ OK ] SimpleListTest._BinaryFindTest (0 ms) [ RUN ] SimpleListTest._SortTest [ OK ] SimpleListTest._SortTest (0 ms) [ RUN ] SimpleListTest._CompareTest [ OK ] SimpleListTest._CompareTest (0 ms) [ RUN ] SimpleListTest._ClearTest [ OK ] SimpleListTest._ClearTest (0 ms) [ RUN ] SimpleListTest._DeleteTest [ OK ] SimpleListTest._DeleteTest (0 ms) [ RUN ] SimpleListTest._TrimMemoryTest [ OK ] SimpleListTest._TrimMemoryTest (0 ms) [ RUN ] SimpleListTest._DeleteDuplicatesTest [ OK ] SimpleListTest._DeleteDuplicatesTest (0 ms) [ RUN ] SimpleListTest._DeleteListTest [ OK ] SimpleListTest._DeleteListTest (0 ms) [ RUN ] SimpleListTest._DisplaceTest [ OK ] SimpleListTest._DisplaceTest (0 ms) [ RUN ] SimpleListTest._PermuteWithReplacementTest [ OK ] SimpleListTest._PermuteWithReplacementTest (0 ms) [ RUN ] SimpleListTest._PermuteTest [ OK ] SimpleListTest._PermuteTest (0 ms) [ RUN ] SimpleListTest._NChooseKTest [ OK ] SimpleListTest._NChooseKTest (0 ms) [ RUN ] SimpleListTest._SwapTest [ OK ] SimpleListTest._SwapTest (0 ms) [ RUN ] SimpleListTest._FlipTest [ OK ] SimpleListTest._FlipTest (0 ms) [ RUN ] SimpleListTest._UnionTest [ OK ] SimpleListTest._UnionTest (0 ms) [ RUN ] SimpleListTest._IntersectTest [ OK ] SimpleListTest._IntersectTest (0 ms) [ RUN ] SimpleListTest._CountCommonElementsTest [ OK ] SimpleListTest._CountCommonElementsTest (0 ms) [ RUN ] SimpleListTest._XORTest [ OK ] SimpleListTest._XORTest (0 ms) [ RUN ] SimpleListTest._SubtractTest [ OK ] SimpleListTest._SubtractTest (0 ms) [----------] 45 tests from SimpleListTest (3 ms total) [----------] 77 tests from StringTest [ RUN ] StringTest.InitializeTest [ OK ] StringTest.InitializeTest (0 ms) [ RUN ] StringTest.DuplicateTest [ OK ] StringTest.DuplicateTest (0 ms) [ RUN ] StringTest.DuplicateErasingTest [ OK ] StringTest.DuplicateErasingTest (0 ms) [ RUN ] StringTest.makeDynamicTest [ OK ] StringTest.makeDynamicTest (0 ms) [ RUN ] StringTest.getCharTest [ OK ] StringTest.getCharTest (0 ms) [ RUN ] StringTest.setCharTest [ OK ] StringTest.setCharTest (0 ms) [ RUN ] StringTest.CopyDynamicStringTest [ OK ] StringTest.CopyDynamicStringTest (0 ms) [ RUN ] StringTest.LengthTest [ OK ] StringTest.LengthTest (0 ms) [ RUN ] StringTest.InsertTest [ OK ] StringTest.InsertTest (0 ms) [ RUN ] StringTest.DeleteTest [ OK ] StringTest.DeleteTest (0 ms) [ RUN ] StringTest.AppendNewInstanceTest [ OK ] StringTest.AppendNewInstanceTest (0 ms) [ RUN ] StringTest.EscapeAndAppendTest [ OK ] StringTest.EscapeAndAppendTest (0 ms) [ RUN ] StringTest.EscapeAndAppend2Test [ OK ] StringTest.EscapeAndAppend2Test (0 ms) [ RUN ] StringTest.FinalizeTest [ OK ] StringTest.FinalizeTest (0 ms) [ RUN ] StringTest.getStrTest [ OK ] StringTest.getStrTest (0 ms) [ RUN ] StringTest.ChopTest [ OK ] StringTest.ChopTest (0 ms) [ RUN ] StringTest.CutTest [ OK ] StringTest.CutTest (0 ms) [ RUN ] StringTest.FlipTest [ OK ] StringTest.FlipTest (0 ms) [ RUN ] StringTest.Adler32Test [ OK ] StringTest.Adler32Test (0 ms) [ RUN ] StringTest.TrimTest [ OK ] StringTest.TrimTest (0 ms) [ RUN ] StringTest.FirstNonSpaceIndexTest [ OK ] StringTest.FirstNonSpaceIndexTest (0 ms) [ RUN ] StringTest.KillSpacesTest [ OK ] StringTest.KillSpacesTest (0 ms) [ RUN ] StringTest.CompressSpacesTest [ OK ] StringTest.CompressSpacesTest (0 ms) [ RUN ] StringTest.FirstSpaceIndexTest [ OK ] StringTest.FirstSpaceIndexTest (0 ms) [ RUN ] StringTest.FirstNonSpaceTest [ OK ] StringTest.FirstNonSpaceTest (0 ms) [ RUN ] StringTest.FirstNonSpace2Test [ OK ] StringTest.FirstNonSpace2Test (0 ms) [ RUN ] StringTest.FindTest [ OK ] StringTest.FindTest (0 ms) [ RUN ] StringTest.FindCharTest [ OK ] StringTest.FindCharTest (0 ms) [ RUN ] StringTest.FindKMPTest [ OK ] StringTest.FindKMPTest (0 ms) [ RUN ] StringTest.FindEndOfIdentTest [ OK ] StringTest.FindEndOfIdentTest (0 ms) [ RUN ] StringTest.FindAnyCaseTest [ OK ] StringTest.FindAnyCaseTest (0 ms) [ RUN ] StringTest.ContainsSubstringTest [ OK ] StringTest.ContainsSubstringTest (0 ms) [ RUN ] StringTest.FindBackwardsTest [ OK ] StringTest.FindBackwardsTest (0 ms) [ RUN ] StringTest.FindBinaryTest [ OK ] StringTest.FindBinaryTest (0 ms) [ RUN ] StringTest.EqualsTest [ OK ] StringTest.EqualsTest (0 ms) [ RUN ] StringTest.CompareTest [ OK ] StringTest.CompareTest (0 ms) [ RUN ] StringTest.EqualWithWildCharTest [ OK ] StringTest.EqualWithWildCharTest (0 ms) [ RUN ] StringTest.GreaterTest [ OK ] StringTest.GreaterTest (0 ms) [ RUN ] StringTest.LessTest [ OK ] StringTest.LessTest (0 ms) [ RUN ] StringTest.containsTest [ OK ] StringTest.containsTest (0 ms) [ RUN ] StringTest.beginswithTest [ OK ] StringTest.beginswithTest (0 ms) [ RUN ] StringTest.startswithTest [ OK ] StringTest.startswithTest (0 ms) [ RUN ] StringTest.endswithTest [ OK ] StringTest.endswithTest (0 ms) [ RUN ] StringTest.FormatTimeStringTest [ OK ] StringTest.FormatTimeStringTest (0 ms) [ RUN ] StringTest.ReplaceTest [ OK ] StringTest.ReplaceTest (0 ms) [ RUN ] StringTest.TokenizeTest [ OK ] StringTest.TokenizeTest (0 ms) [ RUN ] StringTest.toNumTest [ OK ] StringTest.toNumTest (0 ms) [ RUN ] StringTest.UpCaseTest [ OK ] StringTest.UpCaseTest (0 ms) [ RUN ] StringTest.LoCaseTest [ OK ] StringTest.LoCaseTest (0 ms) [ RUN ] StringTest.ProcessTreeBranchLengthTest [ OK ] StringTest.ProcessTreeBranchLengthTest (0 ms) [ RUN ] StringTest.ExtractEnclosedExpressionTest [ OK ] StringTest.ExtractEnclosedExpressionTest (0 ms) [ RUN ] StringTest.IsALiteralArgumentTest [ OK ] StringTest.IsALiteralArgumentTest (0 ms) [ RUN ] StringTest.StripQuotesTest [ OK ] StringTest.StripQuotesTest (0 ms) [ RUN ] StringTest.IsValidIdentifierTest [ OK ] StringTest.IsValidIdentifierTest (0 ms) [ RUN ] StringTest.IsValidRefIdentifierTest [ OK ] StringTest.IsValidRefIdentifierTest (0 ms) [ RUN ] StringTest.PathCompositionTest [ OK ] StringTest.PathCompositionTest (0 ms) [ RUN ] StringTest.PathSubtractionTest [ OK ] StringTest.PathSubtractionTest (0 ms) [ RUN ] StringTest.ConvertToAnIdentTest [ OK ] StringTest.ConvertToAnIdentTest (0 ms) [ RUN ] StringTest.ShortenVarIDTest [ OK ] StringTest.ShortenVarIDTest (0 ms) [ RUN ] StringTest.RegExpMatchOnceTest [ OK ] StringTest.RegExpMatchOnceTest (0 ms) [ RUN ] StringTest.RegExpMatchTest [ OK ] StringTest.RegExpMatchTest (0 ms) [ RUN ] StringTest.RegExpMatchAllTest [ OK ] StringTest.RegExpMatchAllTest (0 ms) [ RUN ] StringTest.LempelZivProductionHistoryTest [ OK ] StringTest.LempelZivProductionHistoryTest (0 ms) [ RUN ] StringTest.SortTest [ OK ] StringTest.SortTest (0 ms) [ RUN ] StringTest.FindTerminatorTest [ OK ] StringTest.FindTerminatorTest (0 ms) [ RUN ] StringTest.AppendAnAssignmentToBufferTest [ OK ] StringTest.AppendAnAssignmentToBufferTest (0 ms) [ RUN ] StringTest.BracketTest [ OK ] StringTest.BracketTest (0 ms) [ RUN ] StringTest.ParanthTest [ OK ] StringTest.ParanthTest (0 ms) [ RUN ] StringTest.EqualTest [ OK ] StringTest.EqualTest (0 ms) [ RUN ] StringTest.AmpersandTest [ OK ] StringTest.AmpersandTest (0 ms) [ RUN ] StringTest.DoubleLessTest [ OK ] StringTest.DoubleLessTest (0 ms) [ RUN ] StringTest.DoubleEqualTest [ OK ] StringTest.DoubleEqualTest (0 ms) [ RUN ] StringTest.GreaterOpTest [ OK ] StringTest.GreaterOpTest (0 ms) [ RUN ] StringTest.LesserOpTest [ OK ] StringTest.LesserOpTest (0 ms) [ RUN ] StringTest.LesserEqualOpTest [ OK ] StringTest.LesserEqualOpTest (0 ms) [ RUN ] StringTest.GreaterEqualOpTest [ OK ] StringTest.GreaterEqualOpTest (0 ms) [ RUN ] StringTest.NotEqualOpTest [ OK ] StringTest.NotEqualOpTest (0 ms) [----------] 77 tests from StringTest (5 ms total) [----------] Global test environment tear-down [==========] 182 tests from 6 test cases ran. (12 ms total) [ PASSED ] 182 tests. make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg' fakeroot debian/rules binary dh binary --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake make -j1 install DESTDIR=/<>/hyphy-2.2.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -H/<>/hyphy-2.2.7+dfsg -B/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SingleBreakpointRecomb.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/selectModelParameters.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SingleBreakpointRecomb-2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GADatedClock.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlidingNucWindow.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GateauxMR.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentProt.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TreeTools.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GARDProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DirectionalREL_MF.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/NucModelCompare.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/readIndexFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/postprocessors.lst -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeCodonData.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/YangNielsenBranchSite2005.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MGvsGY.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchSwap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorCodon.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BS2007.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignShared.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/binomial.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DistanceMatrix_Splits.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LZ_Complexity.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/CodonTools.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/LocalMGREVMLFreqs.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/MPITools.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/PS_Plotters.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/DBTools.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/GrabBag.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/WriteDelimitedFiles.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/ReadDelimitedFiles.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/LocalMGREV.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/PostScript.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/TreeFunctions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/CoalescentPostProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/BranchLengthFitters.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/ProbabilityDistributions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/HXB2Mapper.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/NJ.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/DescriptiveStatistics.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Utility/AncestralMapper.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Phylohandbook.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/NielsenYang.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ClusterByDistanceRange.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StrandGRMTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/pairwiseDistanceEstimatorCounter.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LHT.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MaxChi2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestClade.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/queryTree.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/rate_variation.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/parameters.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/codon.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/codon -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/codon/MG_REV.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/DNA -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/DNA/GTR.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/frequencies.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/model_functions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/DNA.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/models/terms.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/IOFunctions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/UtilityFunctions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/tasks -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/lib2014/tasks/estimators.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CompareSelectivePressure.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BGM.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RELAX.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucProtData2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ClusterAnalysis.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimilarityPlot.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GADatedClock.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSRateAnalysis_MF.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LRTRecombTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Kernel_k_means.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Gateaux.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CompareSelectivePressureIVL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonToProtein.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/distanceMethodNPBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MEME_mf.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGIvL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PairwiseSiteDiversity.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/files.lst -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper3.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CleanStopCodons.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CleanGaps.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Kernel_support.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_dNdS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/partitionSequences.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGEmulator.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSResultProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper4.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MEDS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeDiNucData.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlatkinMaddison.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeCodonDataMPI.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_npbs.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PositiveSelectionLI.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestBranchDNDS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_MSCOneStep.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BivariateCodonRateAnalysis.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis_CompareDS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GARD.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSRateAnalysis.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_ancestors.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MFPSreader.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper1_mf.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SandNSAmbigs.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/WANC.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/PC_MH -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/p_Distance_aa -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/JC69 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/CodonTools.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/K2P -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/CodonToolsMain.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/T3P -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/TN93 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/p_Distance_binary -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/p_Distance -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/Unaligned_LZ_FR -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/PC_RV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/TN93_RV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/Modified_Nei_Gojobori -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/TN84 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/K2P_RV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/Nei_Gojobori -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/CodonTools2.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/p_Distance_codon -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Distances/PC -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorRNA_1.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_lfprofile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSDistributionComparison.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_CMS_Aux.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TopologySearchConstrained.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TopologySearch.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSDistributionComparisonPartitions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SiteRates.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC_Binary.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DistanceMatrix.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/WebUpdate.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchSiteREL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorBranch.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/bayesgraph.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/QuickSelectionDetection.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/molclockBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonModelCompare.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GUI -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GUI/crayolaColors.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RateClassCounter.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorCodon.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PairwiseRelativeRate.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GARD_GA_CHC.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_viewResults.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentCodonShared.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/heuristicMethodNPBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SiteRates2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonUsageBias.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/last.date -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DatedTipsMolecularClock.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SequentialAddition.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorCodonProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TreeCorrelationCoefficients.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/KHTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucDataFreq2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_BMS_Aux.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ReduceDataSetMatrix.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentTop75.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_sns.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2_mf.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/QuickSelectionDetectionMF.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GADatedClockProcessorM.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/lhc.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/sir.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/srs.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Samplers/lhc_supp.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/NeighborJoining.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/categoryEcho.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_saveResults.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/454.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_MFReader_.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LocalMolClock.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_counting.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/simpleBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGEmulator_MF.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_covariance.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GADatedClockProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AddABias.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AAModelComparison.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_pbs.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BUSTED-SRV.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SampleProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SubtreeSelectionComparison.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FitnessAAModels.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/AnalyzeNucProtData.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MFPositiveSelection.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/globalChecker.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PartitionRateComparison.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MFPositiveSelectionPooled.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/F_ST.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlidingWindowAnalysis.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentNuc.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GA_CHC_kernel.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/UpperBound.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/doSPRSwap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/models.lst -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/H5N1 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/WAG -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/rtREV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/VT -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVBetween -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/modellist.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LCAP -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/LG -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/HIVWithin -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/Dayhoff -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/JTT -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/BLOSUM62 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/cpREV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtMAM -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/MtArt -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA_empirical.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84P.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Default -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAUserFreqs.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/PCH -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters2.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16A -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F84.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.dat -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HKY85.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94with9freqs.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters3.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94customF3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/RNAF81 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+F3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween+F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/BranchSiteTemplate.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/190 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/JC69_binary.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/MGwEX.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECM -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalCodon/KHG_ECMu -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RelativeRate.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper1.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/_tipDater.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimpleMutationCounter.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/DirectionalREL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PARRIS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RelativeRateL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BUSTED.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SimmondsAI.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/doNNISwap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SelectionLRT.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MolClockAllRoots.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SlatkinMaddison-2parts.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/GARecomb.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_variance.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PartitionDataFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StarDecomposition.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MergeSequences.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_tools.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_PHASE_4.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_PHASE_5.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_PHASE_3.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_PHASE_2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/FUBAR_HBL/FUBAR_PHASE_1.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate_Multirate.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/GY94.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGenerator.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M1.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/discreteGeneratorNoPS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94GY94xREV_PARRIS_syn3.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_syn3.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M2.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/post_sampler.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SGASimProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/RelativeRatio.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignment.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SeqAlignmentNucShared.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SSRatesTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/qndhelper2.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/LocalBranchSiteTest.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Kernel_PCA.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Gateaux2.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorAAProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relratioBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/CodonBivariateRateProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/SplitSequencesByPattern.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/StripStopCodons.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MolecularClock.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ModelSelectorRNA.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchSiteRELMultiModel.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relrateBootstrap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/TestCladeMeans.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/BranchClassDNDS.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dSdNTreeTools.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/relrateBootstrapL.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/dNdSBivariateRateAnalysis.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/MergeSites.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/chooseDistanceFormula.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/ConvertDataFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TemplateBatchFiles/Plato.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Mold_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Vertebratemtdna.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Ciliate.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Flatworm_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Echinoderm_mtDNA.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GeneticCodes/Blepharisma_Nuclear.cod -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Nucleotide/TrN.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xHKY85_3x4_2Rates.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94REVOmegaCF3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xREV_3x4_DualRV_GDD.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/GY94_3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_REV_3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/Lineage_MG94xHKY85.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Codon/MG94xTN93_3x4.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/JC69 -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/User/Nucleotide/K2P -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/SimulateFromLF -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergenceSubset -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MapSubstitutions -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelp.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/MappersHelpAA.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Includes/ChooseALF.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/MeanPairwiseDivergence -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/AAMutationCounter -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateAndTabDN_DS -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/SimulateFromLF -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/InferredAASubstitutionsCounter -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummaryAA -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dNanddSTrees.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/DashPSTree -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/TreeLengthConstraint -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/Multiclass DN DS inference -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/FilterAssignments -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PredictivePosteriorP -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CodonMutationToTreeMapper.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ModelFitSummary -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ConvergentAndParallel -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/RNARateMatrix -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ExpsPerDirection -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/dS and dN factors -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/LocaldNdS -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/PartitionBranchesByClasses -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/CopyBranchLengths -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/OldAddins/ColorPSTree -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ExportLikelihoodFunction -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/Tidbits -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BranchLengthCI -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/LRT -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/RecombinationProcessor.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ModelCounter -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/ListUserFunctions -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/BatchFileByURL -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/GenBankSequences -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/AAContent -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CodonMutationToTreeMapper -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/UserAddins/CountSubstitutions -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/data -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/data/brown.nuc -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/data/p51.aa -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/data/integrase_BDA.nex -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/data/p51.nex -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Tree Statistics -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TreeAddIns/Splits -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Star_Decomposition -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Exhaustive_Search -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Neighbor_Joining -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Sequential_Addition -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/branchSwappingFunctions.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doSPRSwap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/TopologyInference/Support/doNNISwap.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/codon.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/2 Bin Discrete -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Beta-Gamma -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Half Normal -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/General Discrete -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/Heterogeneity/Lognormal -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Equal -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Estimated -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Partition -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/NucEFV/Observed In Data Set -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/nuc.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Equal -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 3 params. -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Nuc 9 params. -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/CodonEFV/Observed Codon -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/aa.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Equal -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Estimated -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Observed In Partition -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/AAEFV/Observed In Data Set -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/SubstitutionClasses/dinuc.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Index -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Poisson Mixture Fit -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Mean Profile Plot -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Sort -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Approximate_CDF -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Covariance -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Complex Select Cells By Value -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Contigency Table -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/SingleColumn -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Histogram -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Descriptive Statistics -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/KH Resampler -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Populate Cells -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/K-Mean Clustering -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Linear Fit -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/lhc.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/sir.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Samplers/srs.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/FromSQLFlatFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToChartWindow.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/DescriptiveStats.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToConsole.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToTabFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFastaFileFromPandit.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToFrontierFastaFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/ToSQLFlatFile.bf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DBAddIns/HY_DBW_TemplateList -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Running Sum -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Goodness of Fit -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Column Operations -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Gaussian Penalty Clustering -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Median Profile Plot -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Profile Mean Clustering -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Distribution Moments -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/Select Cells By Value -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Distribution -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Posterior Moments -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Prior Moments -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Event Posteriors -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Most Likely Class Assignment -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/ChartAddIns/DistributionAddIns/Includes/posteriors.ibf -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Compare Subsets -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/TBD/Character Plot By Sequence -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot Two -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Character Plot -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/ibfs/char_colors.def -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/DatapanelAddIns/Sequence Plot -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/bin/HYPHYMP -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7000.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7004.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6031.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6034.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/131.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7002.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6008.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5002.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5005.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6019.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4000.xpm -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7020.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7003.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4020.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6001.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/130.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6033.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6007.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6010.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6005.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6021.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6032.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5020.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6042.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6006.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6035.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5001.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4000.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/striped.xpm -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7005.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6012.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6009.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4002.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6036.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6017.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4002.xpm -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/132.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7001.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4003.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5006.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7014.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4011.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button13.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/scrollbar_horiz2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/white.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/option1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/check2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/menu_selected.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_top.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/hline.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_vth2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/check1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/shadow1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook5.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/scrollbar_vert1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_vert1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button12.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button0.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_horiz1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_down3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/option2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_right.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_right3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_top_end.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/menubar.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/htrough.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_down1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/entry1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_left2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_up3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_right_start.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button8.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/handle_vert_thumb.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/vtrough.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button11.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/entry2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button4.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/shadow2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button5.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_right1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_bottom_start.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button11alpha.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/background.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_left3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/blank.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_right_end.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/vline.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button7.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/scrollbar_horiz1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button13alpha.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_top_start.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/frame1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_hth1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/frame_gap_top_end.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/option_menu.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/frame2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_up1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_left_start.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook_border.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_bottom_end.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/frame_gap.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_bottom.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_vth1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook4.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/notebook2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/focus.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/menu_shadow.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_left1.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button3.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button12alpha.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_left.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_down2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/gap_left_end.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button9.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/theme.rc -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_up2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/frame_gap_top_start.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/button6.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/slider_hth2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/arrow_right2.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/theme/empty.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6013.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/133.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4001.xpm -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5004.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6004.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6003.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7013.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6030.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5003.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4001.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7010.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6018.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6016.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7011.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5007.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6014.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6020.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6040.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6022.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7050.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6041.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6011.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/4003.xpm -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6002.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/6000.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/7012.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/lib/hyphy/GTKResources/5000.png -- Installing: /<>/hyphy-2.2.7+dfsg/debian/tmp/usr/bin/HYPHYGTK make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/<>/hyphy-2.2.7+dfsg' # smallcaps for executables for bindir in `find . -type d -name bin` ; do \ for bin in ${bindir}/* ; do \ # ln -s `basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ mv ${bindir}/`basename ${bin}` ${bindir}/`basename ${bin} | tr [A-Z] [a-z]` ; \ done ; \ done dh_install make[1]: Leaving directory '/<>/hyphy-2.2.7+dfsg' dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_strip -O--buildsystem=cmake dh_strip debug symbol extraction: enabling -a due to Build-Debug-Symbols: yes in /CurrentlyBuilding dh_strip debug symbol extraction: all non-arch-all packages for this build platform amd64: hyphygui hyphy-pt hyphy-mpi dh_strip debug symbol extraction: packages to act on: hyphygui hyphy-pt hyphy-mpi dh_strip debug symbol extraction: ignored packages: Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol Using buildid for compat level >= 9 dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe /usr/bin/pkg_create_dbgsym: deferring build of .ddeb to dh_gencontrol dh_makeshlibs -O--buildsystem=cmake dh_shlibdeps -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: all non-arch-all packages for this build platform amd64: hyphygui hyphy-pt hyphy-mpi dh_gencontrol debug symbol wrapper: packages to act on: hyphygui hyphy-pt hyphy-mpi dh_gencontrol debug symbol wrapper: ignored packages: dh_gencontrol debug symbol wrapper: processing package hyphygui (pkgdir debian/hyphygui, ddeb package dir debian/hyphygui-dbgsym) dh_gencontrol debug symbol wrapper: building hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb dpkg-deb: building package 'hyphygui-dbgsym' in '../hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package hyphy-pt (pkgdir debian/hyphy-pt, ddeb package dir debian/hyphy-pt-dbgsym) dh_gencontrol debug symbol wrapper: building hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_gencontrol debug symbol wrapper: processing package hyphy-mpi (pkgdir debian/hyphy-mpi, ddeb package dir debian/hyphy-mpi-dbgsym) dh_gencontrol debug symbol wrapper: building hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb'. dh_gencontrol debug symbol wrapper: dpkg-distaddfile hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb science extra dpkg-distaddfile: warning: File::FcntlLock not available; using flock which is not NFS-safe dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 INFO: pkgstriptranslations version 131 pkgstriptranslations: processing hyphy-common (in debian/hyphy-common); do_strip: , oemstrip: pkgstriptranslations: processing hyphy-pt (in debian/hyphy-pt); do_strip: , oemstrip: pkgstriptranslations: processing hyphygui (in debian/hyphygui); do_strip: , oemstrip: pkgstriptranslations: processing hyphy-mpi (in debian/hyphy-mpi); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/hyphy-pt/DEBIAN/control, package hyphy-pt, directory debian/hyphy-pt INFO: pkgstripfiles: waiting for lock (hyphy-pt) ... pkgstripfiles: processing control file: debian/hyphy-common/DEBIAN/control, package hyphy-common, directory debian/hyphy-common INFO: pkgstripfiles: waiting for lock (hyphy-common) ... pkgstripfiles: processing control file: debian/hyphygui/DEBIAN/control, package hyphygui, directory debian/hyphygui Skipping arch: any to arch: all dependency to hyphy-common pkgstripfiles: Running PNG optimization (using 4 cpus) for package hyphygui ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hyphygui' in '../hyphygui_2.2.7+dfsg-1_amd64.deb'. pkgstripfiles: processing control file: debian/hyphy-mpi/DEBIAN/control, package hyphy-mpi, directory debian/hyphy-mpi INFO: pkgstripfiles: waiting for lock (hyphy-mpi) ... INFO: pkgstripfiles: waiting for lock (hyphy-common) ... Skipping arch: any to arch: all dependency to hyphy-common pkgstripfiles: Running PNG optimization (using 4 cpus) for package hyphy-pt ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.2.7+dfsg-1_amd64.deb'. Skipping arch: any to arch: all dependency to hyphy-common pkgstripfiles: Running PNG optimization (using 4 cpus) for package hyphy-mpi ... pkgstripfiles: No PNG files. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.2.7+dfsg-1_amd64.deb'. pkgstripfiles: Running PNG optimization (using 4 cpus) for package hyphy-common ... oooooooooooooooooooooooooooooooooooooooooooooooooooo.oooooooooooooooooooooooooooooooooo.oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo pkgstripfiles: PNG optimization (144/0) for package hyphy-common took 2 s dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.2.7+dfsg-1_all.deb'. dpkg-genchanges --build=any,all -mLaunchpad Build Daemon >../hyphy_2.2.7+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build hyphy-2.2.7+dfsg dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20161102-0335 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ hyphy_2.2.7+dfsg-1_amd64.changes: --------------------------------- Format: 1.8 Date: Fri, 14 Oct 2016 08:01:08 +0200 Source: hyphy Binary: hyphygui hyphy-pt hyphy-mpi hyphy-common Architecture: all amd64 Version: 2.2.7+dfsg-1 Distribution: zesty-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: hyphy-common - Hypothesis testing using Phylogenies (common files) hyphy-mpi - Hypothesis testing using Phylogenies (MPI version) hyphy-pt - Hypothesis testing using Phylogenies (pthreads version) hyphygui - Hypothesis testing using Phylogenies (GTK+ gui) Changes: hyphy (2.2.7+dfsg-1) unstable; urgency=medium . * New upstream version * Use xz compression in d/watch * python-hyphy is now distributed in separate source archive so removing it from this package Checksums-Sha1: 4deb306e1b9c6e466596ef615c67cb57d2385311 604528 hyphy-common_2.2.7+dfsg-1_all.deb 1eeafd572586a3eb8fe9dada3a0a9a3bc733a686 2135370 hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb 2a376c0a35c6c945d5dc6153c55068a63a8f7600 918888 hyphy-mpi_2.2.7+dfsg-1_amd64.deb 708ae99727cc5f8d98c85109de2f052bf1257332 1607254 hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb 94ae0cec4b347d17d85c3f17ba7252564e53f37c 887834 hyphy-pt_2.2.7+dfsg-1_amd64.deb 9b655519b0673a391eba8167eebee7efb331fb14 2731216 hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb 3b115803b5c01cd323eb29998f60ccf588cb2b53 1486424 hyphygui_2.2.7+dfsg-1_amd64.deb Checksums-Sha256: 1f8644e5d34e440b5a5545708c5cba706d5257d75a1d92a5635d25983383d6b8 604528 hyphy-common_2.2.7+dfsg-1_all.deb 50514a0ede8a9be4e48511daf36554740b1f194607102d7c8afaf43524e52494 2135370 hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb fc6977fc78e7b0515f1c7b56cf32a65a4e9a6b49e4a44ef5173405f1dbe3a155 918888 hyphy-mpi_2.2.7+dfsg-1_amd64.deb d9b513cbbdb2446353523de24b30ec6d97cfcd92935c1d0670cdd545c1b84968 1607254 hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb 115a6c82ba222764e09012e1d7b823b7631f0ac8b931e16b60569080130e84aa 887834 hyphy-pt_2.2.7+dfsg-1_amd64.deb b51815a58c5793121590f32c08bbcfb1b757904efc7cddef7d148523c14b7ead 2731216 hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb b8ba85280ecf11c15309c572c63e223451cf321d58354419b136358fc458f4af 1486424 hyphygui_2.2.7+dfsg-1_amd64.deb Files: 58e249989dbd84d5516e1025b97ee81d 604528 science optional hyphy-common_2.2.7+dfsg-1_all.deb 0cdb8d331f10e259b89ddef0f886dd69 2135370 science extra hyphy-mpi-dbgsym_2.2.7+dfsg-1_amd64.ddeb 2806637ea3075deb440d2fca4158b8b7 918888 science optional hyphy-mpi_2.2.7+dfsg-1_amd64.deb 519806957a93f4fba02bc32e1aba2833 1607254 science extra hyphy-pt-dbgsym_2.2.7+dfsg-1_amd64.ddeb f99a671bb78dd2f503c1d71d55dc84b2 887834 science optional hyphy-pt_2.2.7+dfsg-1_amd64.deb d9bebfa9d75dc31949bcc8e4623df300 2731216 science extra hyphygui-dbgsym_2.2.7+dfsg-1_amd64.ddeb d4249eddbc80c35a75528b6babad0443 1486424 science optional hyphygui_2.2.7+dfsg-1_amd64.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ hyphy-common_2.2.7+dfsg-1_all.deb --------------------------------- new debian package, version 2.0. size 604528 bytes: control archive=22079 bytes. 1110 bytes, 23 lines control 66922 bytes, 754 lines md5sums Package: hyphy-common Source: hyphy Version: 2.2.7+dfsg-1 Architecture: all Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 4955 Suggests: hyphygui | hyphy-mpi | hyphy-pt Section: science Priority: optional Homepage: http://hyphy.org/ Description: Hypothesis testing using Phylogenies (common files) HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . This package provides files that are common to all binary versions. drwxr-xr-x root/root 0 2016-10-14 06:01 ./ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/lib/ lrwxrwxrwx root/root 0 2016-10-14 06:01 ./usr/lib/hyphy -> ../share/hyphy drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/doc/hyphy-common/ -rw-r--r-- root/root 948 2016-10-14 06:01 ./usr/share/doc/hyphy-common/changelog.Debian.gz -rw-r--r-- root/root 3908 2016-10-14 06:01 ./usr/share/doc/hyphy-common/copyright drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/doc/hyphy-common/examples/ drwxr-xr-x root/root 0 2016-08-15 17:37 ./usr/share/doc/hyphy-common/examples/BatchLanguage/ -rw-r--r-- root/root 1490 2016-08-15 17:37 ./usr/share/doc/hyphy-common/examples/BatchLanguage/MatrixIndexing.bf -rw-r--r-- root/root 860 2016-08-15 17:37 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-rw-r--r-- root/root 4680 2016-08-15 17:37 ./usr/share/hyphy/data/brown.nuc -rw-r--r-- root/root 10605 2016-08-15 17:37 ./usr/share/hyphy/data/integrase_BDA.nex -rw-r--r-- root/root 4222 2016-08-15 17:37 ./usr/share/hyphy/data/p51.aa -rw-r--r-- root/root 11176 2016-08-15 17:37 ./usr/share/hyphy/data/p51.nex hyphy-mpi_2.2.7+dfsg-1_amd64.deb -------------------------------- new debian package, version 2.0. size 918888 bytes: control archive=1008 bytes. 1216 bytes, 23 lines control 197 bytes, 3 lines md5sums Package: hyphy-mpi Source: hyphy Version: 2.2.7+dfsg-1 Architecture: amd64 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 2341 Depends: libc6 (>= 2.14), libcurl3-gnutls (>= 7.16.2), libgcc1 (>= 1:3.0), libopenmpi2, libsqlite3-0 (>= 3.5.9), libstdc++6 (>= 4.1.1), hyphy-common Section: science Priority: optional Homepage: http://hyphy.org/ Description: Hypothesis testing using Phylogenies (MPI version) HyPhy is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . 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It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . 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It features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R. Continued development of HyPhy is currently supported in part by an NIGMS R01 award 1R01GM093939. . This package contains the GTK+ gui. drwxr-xr-x root/root 0 2016-10-14 06:01 ./ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/bin/ -rwxr-xr-x root/root 4082880 2016-10-14 06:01 ./usr/bin/hyphygtk drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2016-10-14 06:01 ./usr/share/doc/hyphygui/ -rw-r--r-- root/root 512 2016-10-14 06:01 ./usr/share/doc/hyphygui/README.Debian -rw-r--r-- root/root 948 2016-10-14 06:01 ./usr/share/doc/hyphygui/changelog.Debian.gz -rw-r--r-- root/root 3908 2016-10-14 06:01 ./usr/share/doc/hyphygui/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Not removing build depends: as requested Keeping session: +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build-Space: 287388 Build-Time: 520 Distribution: zesty-proposed Host Architecture: amd64 Install-Time: 34 Job: hyphy_2.2.7+dfsg-1.dsc Machine Architecture: amd64 Package: hyphy Package-Time: 555 Source-Version: 2.2.7+dfsg-1 Space: 287388 Status: successful Version: 2.2.7+dfsg-1 -------------------------------------------------------------------------------- Finished at 20161102-0335 Build needed 00:09:15, 287388k disc space RUN: /usr/share/launchpad-buildd/slavebin/scan-for-processes ['scan-for-processes', 'PACKAGEBUILD-11118613'] Scanning for processes to kill in build /home/buildd/build-PACKAGEBUILD-11118613/chroot-autobuild... RUN: /usr/share/launchpad-buildd/slavebin/umount-chroot ['umount-chroot', 'PACKAGEBUILD-11118613'] Unmounting chroot for build PACKAGEBUILD-11118613... RUN: /usr/share/launchpad-buildd/slavebin/remove-build ['remove-build', 'PACKAGEBUILD-11118613'] Removing build PACKAGEBUILD-11118613