https://launchpad.net/ubuntu/+source/infernal/1.1.2-2/+build/15131353 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux lgw01-amd64-024 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 x86_64 Buildd toolchain package versions: launchpad-buildd_163 python-lpbuildd_163 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.4 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 16 Jul 17:11:09 ntpdate[1876]: adjust time server 10.211.37.1 offset 0.000019 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15131353 /home/buildd/filecache-default/ccc8a783f4c9fcf0282a95411cd13cfaeeda0fbe Creating target for build PACKAGEBUILD-15131353 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15131353 Starting target for build PACKAGEBUILD-15131353 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15131353 'deb http://ftpmaster.internal/ubuntu cosmic main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-security main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-updates main universe' 'deb http://ftpmaster.internal/ubuntu cosmic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-15131353 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15131353 Updating target for build PACKAGEBUILD-15131353 Get:1 http://ftpmaster.internal/ubuntu cosmic InRelease [242 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic-proposed InRelease [92.5 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 Packages [1009 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main Translation-en [516 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/universe i386 Packages [8678 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/universe Translation-en [5024 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 Packages [68.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic-proposed/main Translation-en [38.0 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic-proposed/universe i386 Packages [207 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic-proposed/universe Translation-en [113 kB] Fetched 16.1 MB in 6s (2525 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: libargon2-1 libncurses6 libncursesw6 libprocps7 libtinfo6 The following packages will be upgraded: adduser apt base-files base-passwd bash binutils binutils-common binutils-i686-linux-gnu bsdutils build-essential cpp cpp-7 debconf debianutils dpkg dpkg-dev e2fslibs e2fsprogs fdisk g++ g++-7 gcc gcc-7 gcc-7-base gcc-8-base gpg gpg-agent gpgconf gpgv libapparmor1 libapt-pkg5.0 libargon2-0 libasan4 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libcap-ng0 libcc1-0 libcilkrts5 libcom-err2 libcomerr2 libcryptsetup12 libdpkg-perl libext2fs2 libfdisk1 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgomp1 libgpg-error0 libitm1 libkmod2 liblz4-1 libmount1 libmpx2 libncurses5 libncursesw5 libnpth0 libp11-kit0 libperl5.26 libpng16-16 libquadmath0 libreadline7 libseccomp2 libselinux1 libsemanage-common libsemanage1 libsepol1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.1 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libusb-0.1-4 libuuid1 linux-libc-dev make mount ncurses-base ncurses-bin openssl perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed systemd systemd-sysv tar tzdata util-linux 104 upgraded, 5 newly installed, 0 to remove and 0 not upgraded. Need to get 58.1 MB of archives. After this operation, 2177 kB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu cosmic/main i386 base-files i386 10.1ubuntu4 [58.0 kB] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo6 i386 6.1+20180210-4ubuntu1 [84.6 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 debianutils i386 4.8.6 [86.1 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 bash i386 4.4.18-2ubuntu2 [645 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdutils i386 1:2.32-0.1ubuntu1 [62.7 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 tar i386 1.30+dfsg-2 [265 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg i386 1.19.0.5ubuntu3 [1162 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libext2fs2 i386 1.44.3-1 [186 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fsprogs i386 1.44.3-1 [433 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-bin i386 6.1+20180210-4ubuntu1 [166 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-modules-5.26 all 5.26.2-6 [2762 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libperl5.26 i386 5.26.2-6 [3168 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic/main i386 perl i386 5.26.2-6 [202 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 perl-base i386 5.26.2-6 [1495 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 sed i386 4.5-1 [187 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 libuuid1 i386 2.32-0.1ubuntu1 [20.6 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 libblkid1 i386 2.32-0.1ubuntu1 [143 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 libfdisk1 i386 2.32-0.1ubuntu1 [186 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw6 i386 6.1+20180210-4ubuntu1 [141 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libselinux1 i386 2.8-1build1 [73.2 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libmount1 i386 2.32-0.1ubuntu1 [152 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 libsmartcols1 i386 2.32-0.1ubuntu1 [94.0 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 fdisk i386 2.32-0.1ubuntu1 [118 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 util-linux i386 2.32-0.1ubuntu1 [943 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 base-passwd i386 3.5.45 [47.9 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 ncurses-base all 6.1+20180210-4ubuntu1 [18.4 kB] Get:27 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libquadmath0 i386 8.1.0-10ubuntu1 [208 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libitm1 i386 8.1.0-10ubuntu1 [30.8 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-8-base i386 8.1.0-10ubuntu1 [19.0 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc1 i386 1:8.1.0-10ubuntu1 [48.1 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libmpx2 i386 8.1.0-10ubuntu1 [12.9 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcc1-0 i386 8.1.0-10ubuntu1 [41.8 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libatomic1 i386 8.1.0-10ubuntu1 [9628 B] Get:34 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgomp1 i386 8.1.0-10ubuntu1 [80.7 kB] Get:35 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++6 i386 8.1.0-10ubuntu1 [430 kB] Get:36 http://ftpmaster.internal/ubuntu cosmic/main i386 liblz4-1 i386 1.8.2-1ubuntu1 [69.2 kB] Get:37 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libudev1 i386 238-5ubuntu2 [59.7 kB] Get:38 http://ftpmaster.internal/ubuntu cosmic/main i386 libapt-pkg5.0 i386 1.7.0~alpha2 [875 kB] Get:39 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 debconf all 1.5.67 [124 kB] Get:40 http://ftpmaster.internal/ubuntu cosmic/main i386 adduser all 3.117ubuntu1 [163 kB] Get:41 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgpg-error0 i386 1.32-1 [60.9 kB] Get:42 http://ftpmaster.internal/ubuntu cosmic/main i386 libgcrypt20 i386 1.8.3-1ubuntu1 [401 kB] Get:43 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgv i386 2.2.8-1ubuntu1 [217 kB] Get:44 http://ftpmaster.internal/ubuntu cosmic/main i386 libseccomp2 i386 2.3.3-3ubuntu1 [35.6 kB] Get:45 http://ftpmaster.internal/ubuntu cosmic/main i386 apt i386 1.7.0~alpha2 [1200 kB] Get:46 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libapparmor1 i386 2.12-4ubuntu6 [32.6 kB] Get:47 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit-common all 1:2.8.3-1ubuntu2 [4064 B] Get:48 http://ftpmaster.internal/ubuntu cosmic/main i386 libcap-ng0 i386 0.7.9-1 [11.5 kB] Get:49 http://ftpmaster.internal/ubuntu cosmic/main i386 libaudit1 i386 1:2.8.3-1ubuntu2 [40.1 kB] Get:50 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-1 i386 0~20171227-0.1 [25.2 kB] Get:51 http://ftpmaster.internal/ubuntu cosmic/main i386 libcryptsetup12 i386 2:2.0.2-1ubuntu3 [150 kB] Get:52 http://ftpmaster.internal/ubuntu cosmic/main i386 libkmod2 i386 25-1ubuntu1 [48.3 kB] Get:53 http://ftpmaster.internal/ubuntu cosmic/main i386 mount i386 2.32-0.1ubuntu1 [110 kB] Get:54 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses6 i386 6.1+20180210-4ubuntu1 [108 kB] Get:55 http://ftpmaster.internal/ubuntu cosmic/main i386 libprocps7 i386 2:3.3.15-2ubuntu1 [33.6 kB] Get:56 http://ftpmaster.internal/ubuntu cosmic/main i386 procps i386 2:3.3.15-2ubuntu1 [230 kB] Get:57 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd i386 238-5ubuntu2 [2982 kB] Get:58 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsystemd0 i386 238-5ubuntu2 [225 kB] Get:59 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 systemd-sysv i386 238-5ubuntu2 [13.7 kB] Get:60 http://ftpmaster.internal/ubuntu cosmic/main i386 libcom-err2 i386 1.44.3-1 [9492 B] Get:61 http://ftpmaster.internal/ubuntu cosmic/main i386 libsepol1 i386 2.8-1 [276 kB] Get:62 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage-common all 2.8-1build1 [7000 B] Get:63 http://ftpmaster.internal/ubuntu cosmic/main i386 libsemanage1 i386 2.8-1build1 [94.3 kB] Get:64 http://ftpmaster.internal/ubuntu cosmic/main i386 libss2 i386 1.44.3-1 [11.6 kB] Get:65 http://ftpmaster.internal/ubuntu cosmic/main i386 libgmp10 i386 2:6.1.2+dfsg-3 [246 kB] Get:66 http://ftpmaster.internal/ubuntu cosmic/main i386 libp11-kit0 i386 0.23.12-2 [184 kB] Get:67 http://ftpmaster.internal/ubuntu cosmic/main i386 libtasn1-6 i386 4.13-3 [38.8 kB] Get:68 http://ftpmaster.internal/ubuntu cosmic/main i386 libncurses5 i386 6.1+20180210-4ubuntu1 [101 kB] Get:69 http://ftpmaster.internal/ubuntu cosmic/main i386 libncursesw5 i386 6.1+20180210-4ubuntu1 [128 kB] Get:70 http://ftpmaster.internal/ubuntu cosmic/main i386 libtinfo5 i386 6.1+20180210-4ubuntu1 [79.7 kB] Get:71 http://ftpmaster.internal/ubuntu cosmic/main i386 libargon2-0 i386 0~20171227-0.1 [4532 B] Get:72 http://ftpmaster.internal/ubuntu cosmic/main i386 readline-common all 7.0-5 [52.2 kB] Get:73 http://ftpmaster.internal/ubuntu cosmic/main i386 libreadline7 i386 7.0-5 [127 kB] Get:74 http://ftpmaster.internal/ubuntu cosmic/main i386 libslang2 i386 2.3.2-1ubuntu1 [426 kB] Get:75 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libsqlite3-0 i386 3.24.0-1 [541 kB] Get:76 http://ftpmaster.internal/ubuntu cosmic/main i386 libssl1.1 i386 1.1.0g-2ubuntu5 [1123 kB] Get:77 http://ftpmaster.internal/ubuntu cosmic/main i386 openssl i386 1.1.0g-2ubuntu5 [542 kB] Get:78 http://ftpmaster.internal/ubuntu cosmic/main i386 tzdata all 2018e-1 [188 kB] Get:79 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libpng16-16 i386 1.6.34-2 [184 kB] Get:80 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-common i386 2.30-22ubuntu1 [193 kB] Get:81 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils i386 2.30-22ubuntu1 [3392 B] Get:82 http://ftpmaster.internal/ubuntu cosmic/main i386 binutils-i686-linux-gnu i386 2.30-22ubuntu1 [2029 kB] Get:83 http://ftpmaster.internal/ubuntu cosmic/main i386 libbinutils i386 2.30-22ubuntu1 [545 kB] Get:84 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libasan4 i386 7.3.0-25ubuntu1 [361 kB] Get:85 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libubsan0 i386 7.3.0-25ubuntu1 [141 kB] Get:86 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libcilkrts5 i386 7.3.0-25ubuntu1 [47.3 kB] Get:87 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 g++-7 i386 7.3.0-25ubuntu1 [7816 kB] Get:88 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7 i386 7.3.0-25ubuntu1 [7700 kB] Get:89 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libstdc++-7-dev i386 7.3.0-25ubuntu1 [1504 kB] Get:90 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libgcc-7-dev i386 7.3.0-25ubuntu1 [2400 kB] Get:91 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 cpp-7 i386 7.3.0-25ubuntu1 [6970 kB] Get:92 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 gcc-7-base i386 7.3.0-25ubuntu1 [19.0 kB] Get:93 http://ftpmaster.internal/ubuntu cosmic/main i386 cpp i386 4:7.3.0-3ubuntu3 [27.6 kB] Get:94 http://ftpmaster.internal/ubuntu cosmic/main i386 gcc i386 4:7.3.0-3ubuntu3 [5268 B] Get:95 http://ftpmaster.internal/ubuntu cosmic/main i386 g++ i386 4:7.3.0-3ubuntu3 [1596 B] Get:96 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 make i386 4.2.1-1.1 [168 kB] Get:97 http://ftpmaster.internal/ubuntu cosmic/main i386 dpkg-dev all 1.19.0.5ubuntu3 [608 kB] Get:98 http://ftpmaster.internal/ubuntu cosmic/main i386 libdpkg-perl all 1.19.0.5ubuntu3 [211 kB] Get:99 http://ftpmaster.internal/ubuntu cosmic/main i386 build-essential i386 12.5ubuntu2 [4728 B] Get:100 http://ftpmaster.internal/ubuntu cosmic/main i386 e2fslibs i386 1.44.3-1 [2704 B] Get:101 http://ftpmaster.internal/ubuntu cosmic/main i386 pinentry-curses i386 1.1.0-1build2 [37.8 kB] Get:102 http://ftpmaster.internal/ubuntu cosmic/main i386 libnpth0 i386 1.5-4 [8012 B] Get:103 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg i386 2.2.8-1ubuntu1 [511 kB] Get:104 http://ftpmaster.internal/ubuntu cosmic/main i386 gpgconf i386 2.2.8-1ubuntu1 [130 kB] Get:105 http://ftpmaster.internal/ubuntu cosmic/main i386 gpg-agent i386 2.2.8-1ubuntu1 [247 kB] Get:106 http://ftpmaster.internal/ubuntu cosmic/main i386 libcomerr2 i386 1.44.3-1 [2700 B] Get:107 http://ftpmaster.internal/ubuntu cosmic/main i386 libusb-0.1-4 i386 2:0.1.12-32 [17.9 kB] Get:108 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 linux-libc-dev i386 4.17.0-5.6 [1003 kB] Get:109 http://ftpmaster.internal/ubuntu cosmic/main i386 pkgbinarymangler all 140 [53.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 58.1 MB in 4s (16.1 MB/s) (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../base-files_10.1ubuntu4_i386.deb ... Unpacking base-files (10.1ubuntu4) over (10.1ubuntu2) ... Setting up base-files (10.1ubuntu4) ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... Installing new version of config file /etc/lsb-release ... Selecting previously unselected package libtinfo6:i386. (Reading database ... 12632 files and directories currently installed.) Preparing to unpack .../libtinfo6_6.1+20180210-4ubuntu1_i386.deb ... Unpacking libtinfo6:i386 (6.1+20180210-4ubuntu1) ... Setting up libtinfo6:i386 (6.1+20180210-4ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../debianutils_4.8.6_i386.deb ... Unpacking debianutils (4.8.6) over (4.8.4) ... Setting up debianutils (4.8.6) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bash_4.4.18-2ubuntu2_i386.deb ... Unpacking bash (4.4.18-2ubuntu2) over (4.4.18-2ubuntu1) ... Setting up bash (4.4.18-2ubuntu2) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../bsdutils_1%3a2.32-0.1ubuntu1_i386.deb ... Unpacking bsdutils (1:2.32-0.1ubuntu1) over (1:2.31.1-0.4ubuntu3) ... Setting up bsdutils (1:2.32-0.1ubuntu1) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../tar_1.30+dfsg-2_i386.deb ... Unpacking tar (1.30+dfsg-2) over (1.29b-2) ... Setting up tar (1.30+dfsg-2) ... (Reading database ... 12641 files and directories currently installed.) Preparing to unpack .../dpkg_1.19.0.5ubuntu3_i386.deb ... Unpacking dpkg (1.19.0.5ubuntu3) over (1.19.0.5ubuntu2) ... Setting up dpkg (1.19.0.5ubuntu3) ... (Reading database ... 12641 files and directories currently installed.) 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Processing triggers for libc-bin (2.27-3ubuntu1) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-15131353 i386 cosmic-proposed -c chroot:build-PACKAGEBUILD-15131353 --arch=i386 --dist=cosmic-proposed --nolog infernal_1.1.2-2.dsc Initiating build PACKAGEBUILD-15131353 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on lgw01-amd64-024.buildd +==============================================================================+ | infernal 1.1.2-2 (i386) 16 Jul 2018 17:12 | +==============================================================================+ Package: infernal Version: 1.1.2-2 Source Version: 1.1.2-2 Distribution: cosmic-proposed Machine Architecture: amd64 Host Architecture: i386 Build Architecture: i386 I: NOTICE: Log filtering will replace 'build/infernal-gWN4wM/infernal-1.1.2' with '<>' I: NOTICE: Log filtering will replace 'build/infernal-gWN4wM' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-15131353/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- infernal_1.1.2-2.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-RMYquh/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-RMYquh/apt_archive ./ InRelease Get:2 copy:/<>/resolver-RMYquh/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-RMYquh/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-RMYquh/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-RMYquh/apt_archive ./ Packages [528 B] Fetched 2861 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 852 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-RMYquh/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 852 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12691 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), libperl4-corelibs-perl Filtered Build-Depends: debhelper (>= 11~), libperl4-corelibs-perl dpkg-deb: building package 'sbuild-build-depends-infernal-dummy' in '/<>/resolver-d9DctZ/apt_archive/sbuild-build-depends-infernal-dummy.deb'. Ign:1 copy:/<>/resolver-d9DctZ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-d9DctZ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-d9DctZ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-d9DctZ/apt_archive ./ Sources [227 B] Get:5 copy:/<>/resolver-d9DctZ/apt_archive ./ Packages [545 B] Fetched 2891 B in 0s (0 B/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install infernal build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: libargon2-0 libncursesw5 libprocps6 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1 libfile-stripnondeterminism-perl libglib2.0-0 libicu60 libmagic-mgc libmagic1 libperl4-corelibs-perl libpipeline1 libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db po-debconf sbuild-build-depends-infernal-dummy 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 17.1 MB of archives. After this operation, 63.9 MB of additional disk space will be used. Get:1 copy:/<>/resolver-d9DctZ/apt_archive ./ sbuild-build-depends-infernal-dummy 0.invalid.0 [872 B] Get:2 http://ftpmaster.internal/ubuntu cosmic/main i386 libbsd0 i386 0.9.1-1 [48.8 kB] Get:3 http://ftpmaster.internal/ubuntu cosmic/main i386 bsdmainutils i386 11.1.2ubuntu2 [183 kB] Get:4 http://ftpmaster.internal/ubuntu cosmic/main i386 groff-base i386 1.22.3-10 [1169 kB] Get:5 http://ftpmaster.internal/ubuntu cosmic/main i386 libpipeline1 i386 1.5.0-1 [27.2 kB] Get:6 http://ftpmaster.internal/ubuntu cosmic/main i386 man-db i386 2.8.3-2 [1028 kB] Get:7 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic-mgc i386 1:5.33-3 [192 kB] Get:8 http://ftpmaster.internal/ubuntu cosmic/main i386 libmagic1 i386 1:5.33-3 [76.6 kB] Get:9 http://ftpmaster.internal/ubuntu cosmic/main i386 file i386 1:5.33-3 [22.8 kB] Get:10 http://ftpmaster.internal/ubuntu cosmic/main i386 libelf1 i386 0.170-0.5 [50.7 kB] Get:11 http://ftpmaster.internal/ubuntu cosmic/main i386 libglib2.0-0 i386 2.56.1-2ubuntu1 [1232 kB] Get:12 http://ftpmaster.internal/ubuntu cosmic/main i386 libicu60 i386 60.2-6ubuntu1 [8192 kB] Get:13 http://ftpmaster.internal/ubuntu cosmic-proposed/main i386 libxml2 i386 2.9.4+dfsg1-7build1 [699 kB] Get:14 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext-base i386 0.19.8.1-6build1 [51.3 kB] Get:15 http://ftpmaster.internal/ubuntu cosmic/main i386 libsigsegv2 i386 2.12-2 [14.2 kB] Get:16 http://ftpmaster.internal/ubuntu cosmic/main i386 m4 i386 1.4.18-1 [196 kB] Get:17 http://ftpmaster.internal/ubuntu cosmic/main i386 autoconf all 2.69-11 [322 kB] Get:18 http://ftpmaster.internal/ubuntu cosmic/main i386 autotools-dev all 20180224.1 [39.6 kB] Get:19 http://ftpmaster.internal/ubuntu cosmic/main i386 automake all 1:1.15.1-3ubuntu2 [509 kB] Get:20 http://ftpmaster.internal/ubuntu cosmic/main i386 autopoint all 0.19.8.1-6build1 [412 kB] Get:21 http://ftpmaster.internal/ubuntu cosmic/main i386 libtool all 2.4.6-2.1 [195 kB] Get:22 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-autoreconf all 19 [16.1 kB] Get:23 http://ftpmaster.internal/ubuntu cosmic/main i386 libarchive-zip-perl all 1.60-1ubuntu1 [84.6 kB] Get:24 http://ftpmaster.internal/ubuntu cosmic/main i386 libfile-stripnondeterminism-perl all 0.042-1 [15.2 kB] Get:25 http://ftpmaster.internal/ubuntu cosmic/main i386 libtimedate-perl all 2.3000-2 [37.5 kB] Get:26 http://ftpmaster.internal/ubuntu cosmic/main i386 dh-strip-nondeterminism all 0.042-1 [5188 B] Get:27 http://ftpmaster.internal/ubuntu cosmic/main i386 dwz i386 0.12-2 [80.4 kB] Get:28 http://ftpmaster.internal/ubuntu cosmic/main i386 libcroco3 i386 0.6.12-2 [87.7 kB] Get:29 http://ftpmaster.internal/ubuntu cosmic/main i386 gettext i386 0.19.8.1-6build1 [902 kB] Get:30 http://ftpmaster.internal/ubuntu cosmic/main i386 intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:31 http://ftpmaster.internal/ubuntu cosmic/main i386 po-debconf all 1.0.20 [232 kB] Get:32 http://ftpmaster.internal/ubuntu cosmic/main i386 debhelper all 11.3.2ubuntu1 [883 kB] Get:33 http://ftpmaster.internal/ubuntu cosmic/universe i386 libperl4-corelibs-perl all 0.004-1 [37.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.1 MB in 1s (28.2 MB/s) Selecting previously unselected package libbsd0:i386. (Reading database ... 12691 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-1_i386.deb ... Unpacking libbsd0:i386 (0.9.1-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2ubuntu2_i386.deb ... Unpacking bsdmainutils (11.1.2ubuntu2) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.3-10_i386.deb ... Unpacking groff-base (1.22.3-10) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.0-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.0-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.8.3-2_i386.deb ... Unpacking man-db (2.8.3-2) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../05-libmagic-mgc_1%3a5.33-3_i386.deb ... Unpacking libmagic-mgc (1:5.33-3) ... Selecting previously unselected package libmagic1:i386. 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Setting up libbsd0:i386 (0.9.1-1) ... Setting up libxml2:i386 (2.9.4+dfsg1-7build1) ... Setting up libmagic-mgc (1:5.33-3) ... Setting up libmagic1:i386 (1:5.33-3) ... Setting up libcroco3:i386 (0.6.12-2) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... Setting up dwz (0.12-2) ... Setting up autotools-dev (20180224.1) ... Setting up bsdmainutils (11.1.2ubuntu2) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autopoint (0.19.8.1-6build1) ... Setting up libfile-stripnondeterminism-perl (0.042-1) ... Setting up gettext (0.19.8.1-6build1) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.33-3) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up man-db (2.8.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libtool (2.4.6-2.1) ... Setting up po-debconf (1.0.20) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (0.042-1) ... Setting up debhelper (11.3.2ubuntu1) ... Setting up sbuild-build-depends-infernal-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.27-3ubuntu1) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-128-generic amd64 (i686) Toolchain package versions: binutils_2.30-22ubuntu1 dpkg-dev_1.19.0.5ubuntu3 g++-7_7.3.0-25ubuntu1 gcc-7_7.3.0-25ubuntu1 libc6-dev_2.27-3ubuntu1 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++6_8.1.0-10ubuntu1 linux-libc-dev_4.17.0-5.6 Package versions: adduser_3.117ubuntu1 advancecomp_2.1-1 apt_1.7.0~alpha2 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6build1 autotools-dev_20180224.1 base-files_10.1ubuntu4 base-passwd_3.5.45 bash_4.4.18-2ubuntu2 binutils_2.30-22ubuntu1 binutils-common_2.30-22ubuntu1 binutils-i686-linux-gnu_2.30-22ubuntu1 bsdmainutils_11.1.2ubuntu2 bsdutils_1:2.32-0.1ubuntu1 build-essential_12.5ubuntu2 bzip2_1.0.6-8.1 ca-certificates_20180409 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-3ubuntu3 cpp-7_7.3.0-25ubuntu1 dash_0.5.8-2.10 debconf_1.5.67 debhelper_11.3.2ubuntu1 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dmsetup_2:1.02.145-4.1ubuntu3 dpkg_1.19.0.5ubuntu3 dpkg-dev_1.19.0.5ubuntu3 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 fakeroot_1.22-2ubuntu1 fdisk_2.32-0.1ubuntu1 file_1:5.33-3 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-3ubuntu3 g++-7_7.3.0-25ubuntu1 gcc_4:7.3.0-3ubuntu3 gcc-7_7.3.0-25ubuntu1 gcc-7-base_7.3.0-25ubuntu1 gcc-8-base_8.1.0-10ubuntu1 gettext_0.19.8.1-6build1 gettext-base_0.19.8.1-6build1 gpg_2.2.8-1ubuntu1 gpg-agent_2.2.8-1ubuntu1 gpgconf_2.2.8-1ubuntu1 gpgv_2.2.8-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 libacl1_2.2.52-3build1 libapparmor1_2.12-4ubuntu6 libapt-pkg5.0_1.7.0~alpha2 libarchive-zip-perl_1.60-1ubuntu1 libargon2-0_0~20171227-0.1 libargon2-1_0~20171227-0.1 libasan4_7.3.0-25ubuntu1 libassuan0_2.5.1-2 libatomic1_8.1.0-10ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.3-1ubuntu2 libaudit1_1:2.8.3-1ubuntu2 libbinutils_2.30-22ubuntu1 libblkid1_2.32-0.1ubuntu1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-3ubuntu1 libc-dev-bin_2.27-3ubuntu1 libc6_2.27-3ubuntu1 libc6-dev_2.27-3ubuntu1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-10ubuntu1 libcilkrts5_7.3.0-25ubuntu1 libcom-err2_1.44.3-1 libcomerr2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.2-1ubuntu3 libdb5.3_5.3.28-13.1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu3 libdpkg-perl_1.19.0.5ubuntu3 libelf1_0.170-0.5 libext2fs2_1.44.3-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.32-0.1ubuntu1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libgcc-7-dev_7.3.0-25ubuntu1 libgcc1_1:8.1.0-10ubuntu1 libgcrypt20_1.8.3-1ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2ubuntu1 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1ubuntu1 libgomp1_8.1.0-10ubuntu1 libgpg-error0_1.32-1 libhogweed4_3.4-1 libicu60_60.2-6ubuntu1 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libip4tc0_1.6.1-2ubuntu2 libisl19_0.19-1 libitm1_8.1.0-10ubuntu1 libjson-c3_0.12.1-1.3 libkmod2_25-1ubuntu1 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblz4-1_1.8.2-1ubuntu1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.33-3 libmagic1_1:5.33-3 libmount1_2.32-0.1ubuntu1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libmpx2_8.1.0-10ubuntu1 libncurses5_6.1+20180210-4ubuntu1 libncurses6_6.1+20180210-4ubuntu1 libncursesw5_6.1+20180210-4ubuntu1 libncursesw6_6.1+20180210-4ubuntu1 libnettle6_3.4-1 libnpth0_1.5-4 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.6ubuntu2 libpam-modules-bin_1.1.8-3.6ubuntu2 libpam-runtime_1.1.8-3.6ubuntu2 libpam0g_1.1.8-3.6ubuntu2 libpcre3_2:8.39-9 libperl4-corelibs-perl_0.004-1 libperl5.26_5.26.2-6 libpipeline1_1.5.0-1 libpng16-16_1.6.34-2 libprocps6_2:3.3.12-3ubuntu1 libprocps7_2:3.3.15-2ubuntu1 libquadmath0_8.1.0-10ubuntu1 libreadline7_7.0-5 libseccomp2_2.3.3-3ubuntu1 libselinux1_2.8-1build1 libsemanage-common_2.8-1build1 libsemanage1_2.8-1build1 libsepol1_2.8-1 libsigsegv2_2.12-2 libslang2_2.3.2-1ubuntu1 libsmartcols1_2.32-0.1ubuntu1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0g-2ubuntu5 libstdc++-7-dev_7.3.0-25ubuntu1 libstdc++6_8.1.0-10ubuntu1 libsystemd0_238-5ubuntu2 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180210-4ubuntu1 libtinfo6_6.1+20180210-4ubuntu1 libtool_2.4.6-2.1 libubsan0_7.3.0-25ubuntu1 libudev1_238-5ubuntu2 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-32 libuuid1_2.32-0.1ubuntu1 libxml2_2.9.4+dfsg1-7build1 libzstd1_1.3.3+dfsg-2ubuntu1 linux-libc-dev_4.17.0-5.6 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.2.1-1.1 man-db_2.8.3-2 mawk_1.3.3-17ubuntu3 mount_2.32-0.1ubuntu1 multiarch-support_2.27-3ubuntu1 ncurses-base_6.1+20180210-4ubuntu1 ncurses-bin_6.1+20180210-4ubuntu1 openssl_1.1.0g-2ubuntu5 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-2ubuntu1 perl_5.26.2-6 perl-base_5.26.2-6 perl-modules-5.26_5.26.2-6 pinentry-curses_1.1.0-1build2 pkgbinarymangler_140 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.15-2ubuntu1 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-infernal-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_238-5ubuntu2 systemd-sysv_238-5ubuntu2 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.30+dfsg-2 tzdata_2018e-1 ubuntu-keyring_2018.02.28 util-linux_2.32-0.1ubuntu1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Mon Jul 16 10:31:51 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./infernal_1.1.2-2.dsc dpkg-source: info: extracting infernal in infernal-1.1.2 dpkg-source: info: unpacking infernal_1.1.2.orig.tar.gz dpkg-source: info: unpacking infernal_1.1.2-2.debian.tar.xz dpkg-source: info: applying reproducible.patch dpkg-source: info: applying autoreconf.patch dpkg-source: info: applying spelling.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-15131353 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-15131353 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-15131353 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.2-2 dpkg-buildpackage: info: source distribution unstable dpkg-source --before-build infernal-1.1.2 dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' if [ -r Makefile ]; then /usr/bin/make distclean; fi cd documentation/userguide && if [ -r Makefile ]; then make distclean; fi cd easel/documentation && if [ -r Makefile ]; then make distclean; fi dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1 make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --libexecdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: Configuring Infernal for your system. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu configure: Full Infernal source distribution - using full configuration checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for C compiler vendor... gnu checking for the pthreads library -lpthreads... no checking whether pthreads work without any flags... no checking whether pthreads work with -Kthread... no checking whether pthreads work with -kthread... no checking for the pthreads library -llthread... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking if more special flags are required for pthreads... no checking for cc_r... gcc checking for gcc... (cached) gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... (cached) yes checking for gcc option to accept ISO C89... (cached) none needed checking for a BSD-compatible install... /usr/bin/install -c checking how to run the C preprocessor... gcc -E checking for C compiler vendor... (cached) gnu checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking whether you have a GNU make... yes, you do; and we assume you will use it! ./configure: line 5476: AX_CC_MAXOPT: command not found checking for gcc option to produce PIC... -fPIC checking whether C compiler accepts -msse2... yes checking whether C compiler accepts -msse2 -msse3... yes checking compiler support for sse2 cast functions... yes checking whether SSE2 is supported... yes checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes configure: Activating Intel/AMD SSE optimized DP implementation checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for library containing clock_gettime... none required checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking emmintrin.h usability... yes checking emmintrin.h presence... yes checking for emmintrin.h... yes checking pmmintrin.h usability... yes checking pmmintrin.h presence... yes checking for pmmintrin.h... yes checking xmmintrin.h usability... yes checking xmmintrin.h presence... yes checking for xmmintrin.h... yes checking whether byte ordering is bigendian... no checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking for mkstemp... yes checking for popen... yes checking for strcasecmp... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for stat... yes checking for fstat... yes checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: creating ./config.status config.status: creating src/Makefile config.status: creating src/impl_sse/Makefile config.status: creating testsuite/Makefile config.status: creating rmark/Makefile config.status: creating documentation/Makefile config.status: creating documentation/manpages/Makefile config.status: creating documentation/userguide/Makefile config.status: creating hmmer/documentation/Makefile config.status: creating hmmer/documentation/man/Makefile config.status: creating hmmer/documentation/userguide/Makefile config.status: creating hmmer/src/Makefile config.status: creating hmmer/testsuite/Makefile config.status: creating hmmer/profmark/Makefile config.status: creating hmmer/src/impl_sse/Makefile config.status: creating hmmer/libdivsufsort/Makefile config.status: creating hmmer/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/Makefile config.status: creating easel/documentation/Makefile config.status: creating Makefile config.status: creating src/config.h config.status: creating hmmer/src/p7_config.h config.status: creating hmmer/libdivsufsort/divsufsort.h config.status: creating easel/esl_config.h config.status: executing hmmer/src/impl commands configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking INFERNAL configuration: compiler: gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -msse3 -pthread -fPIC linker: -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now libraries: DP implementation: sse dh_auto_build -a make -j4 make[1]: Entering directory '/<>' make -C easel all make[2]: Entering directory '/<>/easel' gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o easel.o -c easel.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_alphabet.o -c esl_alphabet.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_avx.o -c esl_avx.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_buffer.o -c esl_buffer.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_cluster.o -c esl_cluster.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_composition.o -c esl_composition.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_dirichlet.o -c esl_dirichlet.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_distance.o -c esl_distance.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_dmatrix.o -c esl_dmatrix.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_dsqdata.o -c esl_dsqdata.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_exponential.o -c esl_exponential.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_fileparser.o -c esl_fileparser.c esl_fileparser.c: In function ‘esl_fileparser_NextLine’: esl_fileparser.c:278:21: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^~ esl_fileparser.c:278:14: note: did you mean to dereference the pointer? while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^ esl_fileparser.c: In function ‘esl_fileparser_NextLinePeeked’: esl_fileparser.c:359:17: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^~ esl_fileparser.c:359:10: note: did you mean to dereference the pointer? while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^ gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_gamma.o -c esl_gamma.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_gencode.o -c esl_gencode.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_getopts.o -c esl_getopts.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_gev.o -c esl_gev.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_gumbel.o -c esl_gumbel.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_heap.o -c esl_heap.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_histogram.o -c esl_histogram.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_hmm.o -c esl_hmm.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_hyperexp.o -c esl_hyperexp.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_keyhash.o -c esl_keyhash.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_mem.o -c esl_mem.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_minimizer.o -c esl_minimizer.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_mixgev.o -c esl_mixgev.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_mpi.o -c esl_mpi.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msa.o -c esl_msa.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msacluster.o -c esl_msacluster.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile.o -c esl_msafile.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile2.o -c esl_msafile2.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_a2m.o -c esl_msafile_a2m.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_afa.o -c esl_msafile_afa.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_clustal.o -c esl_msafile_clustal.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_phylip.o -c esl_msafile_phylip.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_psiblast.o -c esl_msafile_psiblast.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_selex.o -c esl_msafile_selex.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msafile_stockholm.o -c esl_msafile_stockholm.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msashuffle.o -c esl_msashuffle.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_msaweight.o -c esl_msaweight.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_normal.o -c esl_normal.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_paml.o -c esl_paml.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_random.o -c esl_random.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_randomseq.o -c esl_randomseq.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_ratematrix.o -c esl_ratematrix.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_recorder.o -c esl_recorder.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_regexp.o -c esl_regexp.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_rootfinder.o -c esl_rootfinder.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_scorematrix.o -c esl_scorematrix.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_sq.o -c esl_sq.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_sqio.o -c esl_sqio.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_sqio_ascii.o -c esl_sqio_ascii.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_sqio_ncbi.o -c esl_sqio_ncbi.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_sse.o -c esl_sse.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_ssi.o -c esl_ssi.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_stack.o -c esl_stack.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_stats.o -c esl_stats.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_stopwatch.o -c esl_stopwatch.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_stretchexp.o -c esl_stretchexp.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_threads.o -c esl_threads.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_tree.o -c esl_tree.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_vectorops.o -c esl_vectorops.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_vmx.o -c esl_vmx.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_weibull.o -c esl_weibull.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_workqueue.o -c esl_workqueue.c gcc -I. -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -o esl_wuss.o -c esl_wuss.c /usr/bin/ar -r libeasel.a easel.o esl_alphabet.o esl_avx.o esl_buffer.o esl_cluster.o esl_composition.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_hyperexp.o esl_keyhash.o esl_mem.o esl_minimizer.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_random.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_sse.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_threads.o esl_tree.o esl_vectorops.o esl_vmx.o esl_weibull.o esl_workqueue.o esl_wuss.o > /dev/null 2>&1 make -C miniapps all make[3]: Entering directory '/<>/easel/miniapps' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-afetch.o -c esl-afetch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimanip.o -c esl-alimanip.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimap.o -c esl-alimap.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimask.o -c esl-alimask.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alimerge.o -c esl-alimerge.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alipid.o -c esl-alipid.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alirev.o -c esl-alirev.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-alistat.o -c esl-alistat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-cluster.o -c esl-cluster.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-compalign.o -c esl-compalign.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-compstruct.o -c esl-compstruct.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-construct.o -c esl-construct.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-histplot.o -c esl-histplot.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-mask.o -c esl-mask.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-reformat.o -c esl-reformat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-selectn.o -c esl-selectn.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-seqrange.o -c esl-seqrange.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-seqstat.o -c esl-seqstat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-sfetch.o -c esl-sfetch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-shuffle.o -c esl-shuffle.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-ssdraw.o -c esl-ssdraw.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-translate.o -c esl-translate.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -I. -I.. -I. -I./.. -o esl-weight.o -c esl-weight.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-afetch esl-afetch.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alimanip esl-alimanip.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alimap esl-alimap.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alimask esl-alimask.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alimerge esl-alimerge.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alipid esl-alipid.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alirev esl-alirev.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-alistat esl-alistat.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-cluster esl-cluster.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-compalign esl-compalign.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-compstruct esl-compstruct.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-construct esl-construct.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-histplot esl-histplot.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-mask esl-mask.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-reformat esl-reformat.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-selectn esl-selectn.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-seqrange esl-seqrange.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-seqstat esl-seqstat.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-sfetch esl-sfetch.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-shuffle esl-shuffle.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-translate esl-translate.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-weight esl-weight.o -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L.. -o esl-ssdraw esl-ssdraw.o -leasel -lm make[3]: Leaving directory '/<>/easel/miniapps' make[2]: Leaving directory '/<>/easel' make -C hmmer/libdivsufsort all make[2]: Entering directory '/<>/hmmer/libdivsufsort' gcc -I. -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -o divsufsort.o -c divsufsort.c /usr/bin/ar rc libdivsufsort.a divsufsort.o make[2]: Leaving directory '/<>/hmmer/libdivsufsort' make -C hmmer all make[2]: Entering directory '/<>/hmmer' make -C ../easel all make[3]: Entering directory '/<>/easel' make -C miniapps all make[4]: Entering directory '/<>/easel/miniapps' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/easel/miniapps' make[3]: Leaving directory '/<>/easel' make -C libdivsufsort all make[3]: Entering directory '/<>/hmmer/libdivsufsort' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/hmmer/libdivsufsort' make -C src all make[3]: Entering directory '/<>/hmmer/src' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o build.o -c build.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_null3.o -c p7_null3.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdwrkr.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hmm.o p7_hmmcache.o p7_hmmfile.o p7_hmmwindow.o p7_null3.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/<>/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o io.o -c io.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[4]: Leaving directory '/<>/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lm make[3]: Leaving directory '/<>/hmmer/src' make -C profmark all make[3]: Entering directory '/<>/hmmer/profmark' gcc -I../../easel -I../../easel -I../src -I../../src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../../easel -I../../easel -I../src -I../../src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lm make[3]: Leaving directory '/<>/hmmer/profmark' make[2]: Leaving directory '/<>/hmmer' make -C src all make[2]: Entering directory '/<>/src' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmalign.o -c cmalign.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm.o -c cm.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alidisplay.o -c cm_alidisplay.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alndata.o -c cm_alndata.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign.o -c cm_dpalign.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign_trunc.o -c cm_dpalign_trunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch.o -c cm_dpsearch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch_trunc.o -c cm_dpsearch_trunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsmall.o -c cm_dpsmall.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_file.o -c cm_file.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelconfig.o -c cm_modelconfig.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelmaker.o -c cm_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_mx.o -c cm_mx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_parsetree.o -c cm_parsetree.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_pipeline.o -c cm_pipeline.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_qdband.o -c cm_qdband.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_submodel.o -c cm_submodel.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_tophits.o -c cm_tophits.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_trunc.o -c cm_trunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_band.o -c cm_p7_band.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_domaindef.o -c cm_p7_domaindef.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelconfig_trunc.o -c cm_p7_modelconfig_trunc.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelmaker.o -c cm_p7_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9.o -c cp9.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_dp.o -c cp9_dp.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_modelmaker.o -c cp9_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_mx.o -c cp9_mx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_trace.o -c cp9_trace.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o alphabet.o -c alphabet.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o display.o -c display.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o errors.o -c errors.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o hmmband.o -c hmmband.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o prior.o -c prior.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o rnamat.o -c rnamat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o stats.o -c stats.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk.o -c truncyk.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmbuild.o -c cmbuild.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmcalibrate.o -c cmcalibrate.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmconvert.o -c cmconvert.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmemit.o -c cmemit.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmfetch.o -c cmfetch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmpress.o -c cmpress.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmscan.o -c cmscan.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmsearch.o -c cmsearch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmstat.o -c cmstat.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o trcyk.o -c trcyk.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-montecarlo-test.o -c bandcyk-montecarlo-test.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-truncation-test.o -c bandcyk-truncation-test.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9-test.o -c cp9-test.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o sub_cm-test.o -c sub_cm-test.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk_check.o -c truncyk_check.c /usr/bin/ar -r libinfernal.a cm.o cm_alidisplay.o cm_alndata.o cm_dpalign.o cm_dpalign_trunc.o cm_dpsearch.o cm_dpsearch_trunc.o cm_dpsmall.o cm_file.o cm_modelconfig.o cm_modelmaker.o cm_mx.o cm_parsetree.o cm_pipeline.o cm_qdband.o cm_submodel.o cm_tophits.o cm_trunc.o cm_p7_band.o cm_p7_domaindef.o cm_p7_modelconfig_trunc.o cm_p7_modelmaker.o cp9.o cp9_dp.o cp9_modelmaker.o cp9_mx.o cp9_trace.o alphabet.o display.o errors.o eweight.o hmmband.o logsum.o mpisupport.o prior.o rnamat.o stats.o truncyk.o > /dev/null 2>&1 make -C impl_sse libinfernal-impl.stamp make[3]: Entering directory '/<>/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o cm_optimized.o -c cm_optimized.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsearch.o -c sse_cm_dpsearch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsmall.o -c sse_cm_dpsmall.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_hitmx.o -c sse_cmcons_hitmx.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_mscyk.o -c sse_cmcons_mscyk.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_util.o -c sse_util.c /usr/bin/ar -r ../libinfernal.a cm_optimized.o sse_cm_dpsearch.o sse_cm_dpsmall.o sse_cmcons_hitmx.o sse_cmcons_mscyk.o sse_util.o > /dev/null 2>&1 make[3]: Leaving directory '/<>/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmalign cmalign.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmbuild cmbuild.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmcalibrate cmcalibrate.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmconvert cmconvert.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmemit cmemit.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmfetch cmfetch.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmpress cmpress.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmscan cmscan.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmsearch cmsearch.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmstat cmstat.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o trcyk trcyk.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-montecarlo-test bandcyk-montecarlo-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-truncation-test bandcyk-truncation-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cp9-test cp9-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o sub_cm-test sub_cm-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o truncyk_check truncyk_check.o -linfernal -lhmmer -leasel -lm make[2]: Leaving directory '/<>/src' make -C rmark all make[2]: Entering directory '/<>/rmark' gcc -I../easel -I../easel -I../src -I../src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -o rmark-create.o -c rmark-create.c gcc -I../easel -I../easel -I../src -I../src -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -o rmark-rocplot.o -c rmark-rocplot.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-rocplot rmark-rocplot.o -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-create rmark-create.o -lhmmer -leasel -lm make[2]: Leaving directory '/<>/rmark' make -C src/impl_sse all make[2]: Entering directory '/<>/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmsearch.o -c sse_cmsearch.c gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L../../hmmer/src -L.. -o sse_cmsearch sse_cmsearch.o -linfernal -lhmmer -leasel -lm make[2]: Leaving directory '/<>/src/impl_sse' make[1]: Leaving directory '/<>' dh_auto_test -a make -j4 check VERBOSE=1 make[1]: Entering directory '/<>' make -C easel tests make[2]: Entering directory '/<>/easel' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_alphabet_utest -I. -I. -L. -DeslALPHABET_TESTDRIVE ./esl_alphabet.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_cluster_utest -I. -I. -L. -DeslCLUSTER_TESTDRIVE ./esl_cluster.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_buffer_utest -I. -I. -L. -DeslBUFFER_TESTDRIVE ./esl_buffer.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o easel_utest -I. -I. -L. -DeslEASEL_TESTDRIVE ./easel.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_dirichlet_utest -I. -I. -L. -DeslDIRICHLET_TESTDRIVE ./esl_dirichlet.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_distance_utest -I. -I. -L. -DeslDISTANCE_TESTDRIVE ./esl_distance.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_dmatrix_utest -I. -I. -L. -DeslDMATRIX_TESTDRIVE ./esl_dmatrix.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_dsqdata_utest -I. -I. -L. -DeslDSQDATA_TESTDRIVE ./esl_dsqdata.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_exponential_utest -I. -I. -L. -DeslEXPONENTIAL_TESTDRIVE ./esl_exponential.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_fileparser_utest -I. -I. -L. -DeslFILEPARSER_TESTDRIVE ./esl_fileparser.c -leasel -lm ./esl_fileparser.c: In function ‘esl_fileparser_NextLine’: ./esl_fileparser.c:278:21: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^~ ./esl_fileparser.c:278:14: note: did you mean to dereference the pointer? while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^ ./esl_fileparser.c: In function ‘esl_fileparser_NextLinePeeked’: ./esl_fileparser.c:359:17: warning: comparison between pointer and zero character constant [-Wpointer-compare] while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^~ ./esl_fileparser.c:359:10: note: did you mean to dereference the pointer? while (efp->s != '\0' && isspace(*(efp->s))) efp->s++; ^ gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_gamma_utest -I. -I. -L. -DeslGAMMA_TESTDRIVE ./esl_gamma.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_gencode_utest -I. -I. -L. -DeslGENCODE_TESTDRIVE ./esl_gencode.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_getopts_utest -I. -I. -L. -DeslGETOPTS_TESTDRIVE ./esl_getopts.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_gumbel_utest -I. -I. -L. -DeslGUMBEL_TESTDRIVE ./esl_gumbel.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_heap_utest -I. -I. -L. -DeslHEAP_TESTDRIVE ./esl_heap.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_histogram_utest -I. -I. -L. -DeslHISTOGRAM_TESTDRIVE ./esl_histogram.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_hmm_utest -I. -I. -L. -DeslHMM_TESTDRIVE ./esl_hmm.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_hyperexp_utest -I. -I. -L. -DeslHYPEREXP_TESTDRIVE ./esl_hyperexp.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_keyhash_utest -I. -I. -L. -DeslKEYHASH_TESTDRIVE ./esl_keyhash.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_mem_utest -I. -I. -L. -DeslMEM_TESTDRIVE ./esl_mem.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msa_utest -I. -I. -L. -DeslMSA_TESTDRIVE ./esl_msa.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msacluster_utest -I. -I. -L. -DeslMSACLUSTER_TESTDRIVE ./esl_msacluster.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_utest -I. -I. -L. -DeslMSAFILE_TESTDRIVE ./esl_msafile.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile2_utest -I. -I. -L. -DeslMSAFILE2_TESTDRIVE ./esl_msafile2.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_a2m_utest -I. -I. -L. -DeslMSAFILE_A2M_TESTDRIVE ./esl_msafile_a2m.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_afa_utest -I. -I. -L. -DeslMSAFILE_AFA_TESTDRIVE ./esl_msafile_afa.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_clustal_utest -I. -I. -L. -DeslMSAFILE_CLUSTAL_TESTDRIVE ./esl_msafile_clustal.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_phylip_utest -I. -I. -L. -DeslMSAFILE_PHYLIP_TESTDRIVE ./esl_msafile_phylip.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_psiblast_utest -I. -I. -L. -DeslMSAFILE_PSIBLAST_TESTDRIVE ./esl_msafile_psiblast.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_selex_utest -I. -I. -L. -DeslMSAFILE_SELEX_TESTDRIVE ./esl_msafile_selex.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msafile_stockholm_utest -I. -I. -L. -DeslMSAFILE_STOCKHOLM_TESTDRIVE ./esl_msafile_stockholm.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_msaweight_utest -I. -I. -L. -DeslMSAWEIGHT_TESTDRIVE ./esl_msaweight.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_normal_utest -I. -I. -L. -DeslNORMAL_TESTDRIVE ./esl_normal.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_random_utest -I. -I. -L. -DeslRANDOM_TESTDRIVE ./esl_random.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_randomseq_utest -I. -I. -L. -DeslRANDOMSEQ_TESTDRIVE ./esl_randomseq.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_ratematrix_utest -I. -I. -L. -DeslRATEMATRIX_TESTDRIVE ./esl_ratematrix.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_recorder_utest -I. -I. -L. -DeslRECORDER_TESTDRIVE ./esl_recorder.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_regexp_utest -I. -I. -L. -DeslREGEXP_TESTDRIVE ./esl_regexp.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_rootfinder_utest -I. -I. -L. -DeslROOTFINDER_TESTDRIVE ./esl_rootfinder.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_scorematrix_utest -I. -I. -L. -DeslSCOREMATRIX_TESTDRIVE ./esl_scorematrix.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_sq_utest -I. -I. -L. -DeslSQ_TESTDRIVE ./esl_sq.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_sqio_utest -I. -I. -L. -DeslSQIO_TESTDRIVE ./esl_sqio.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_sse_utest -I. -I. -L. -DeslSSE_TESTDRIVE ./esl_sse.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_ssi_utest -I. -I. -L. -DeslSSI_TESTDRIVE ./esl_ssi.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_stack_utest -I. -I. -L. -DeslSTACK_TESTDRIVE ./esl_stack.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_stats_utest -I. -I. -L. -DeslSTATS_TESTDRIVE ./esl_stats.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_stretchexp_utest -I. -I. -L. -DeslSTRETCHEXP_TESTDRIVE ./esl_stretchexp.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_tree_utest -I. -I. -L. -DeslTREE_TESTDRIVE ./esl_tree.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_vectorops_utest -I. -I. -L. -DeslVECTOROPS_TESTDRIVE ./esl_vectorops.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_weibull_utest -I. -I. -L. -DeslWEIBULL_TESTDRIVE ./esl_weibull.c -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -o esl_wuss_utest -I. -I. -L. -DeslWUSS_TESTDRIVE ./esl_wuss.c -leasel -lm make -C miniapps tests make[3]: Entering directory '/<>/easel/miniapps' make[3]: Nothing to be done for 'tests'. make[3]: Leaving directory '/<>/easel/miniapps' make[2]: Leaving directory '/<>/easel' make -C hmmer/libdivsufsort all make[2]: Entering directory '/<>/hmmer/libdivsufsort' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/<>/hmmer/libdivsufsort' make -C hmmer tests make[2]: Entering directory '/<>/hmmer' make -C ../easel tests make[3]: Entering directory '/<>/easel' make -C miniapps tests make[4]: Entering directory '/<>/easel/miniapps' make[4]: Nothing to be done for 'tests'. make[4]: Leaving directory '/<>/easel/miniapps' make[3]: Leaving directory '/<>/easel' make -C src tests make[3]: Entering directory '/<>/hmmer/src' make -C impl_sse libhmmer-impl.stamp make[4]: Entering directory '/<>/hmmer/src/impl_sse' make[4]: 'libhmmer-impl.stamp' is up to date. make[4]: Leaving directory '/<>/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o itest_brute.o -c itest_brute.c {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GENERIC_FWDBACK_TESTDRIVE -o generic_fwdback_utest ./generic_fwdback.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7BUILD_TESTDRIVE -o build_utest ./build.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GENERIC_FWDBACK_CHK_TESTDRIVE -o generic_fwdback_chk_utest ./generic_fwdback_chk.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GENERIC_MSV_TESTDRIVE -o generic_msv_utest ./generic_msv.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GENERIC_STOTRACE_TESTDRIVE -o generic_stotrace_utest ./generic_stotrace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GENERIC_VITERBI_TESTDRIVE -o generic_viterbi_utest ./generic_viterbi.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7HMMER_TESTDRIVE -o hmmer_utest ./hmmer.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7LOGSUM_TESTDRIVE -o logsum_utest ./logsum.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7MODELCONFIG_TESTDRIVE -o modelconfig_utest ./modelconfig.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7SEQMODEL_TESTDRIVE -o seqmodel_utest ./seqmodel.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7ALIDISPLAY_TESTDRIVE -o p7_alidisplay_utest ./p7_alidisplay.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7BG_TESTDRIVE -o p7_bg_utest ./p7_bg.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GMX_TESTDRIVE -o p7_gmx_utest ./p7_gmx.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7GMXCHK_TESTDRIVE -o p7_gmxchk_utest ./p7_gmxchk.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7HMM_TESTDRIVE -o p7_hmm_utest ./p7_hmm.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7HMMFILE_TESTDRIVE -o p7_hmmfile_utest ./p7_hmmfile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7PROFILE_TESTDRIVE -o p7_profile_utest ./p7_profile.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7TOPHITS_TESTDRIVE -o p7_tophits_utest ./p7_tophits.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7TRACE_TESTDRIVE -o p7_trace_utest ./p7_trace.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7SCOREDATA_TESTDRIVE -o p7_scoredata_utest ./p7_scoredata.c -lhmmer -leasel -ldivsufsort -lm {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L./impl_sse -L../libdivsufsort -L. -I../../easel -I../libdivsufsort -I../../easel -I. -I. -Dp7HMMPGMD2MSA_TESTDRIVE -o hmmpgmd2msa_utest ./hmmpgmd2msa.c -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o itest_brute itest_brute.o -lhmmer -leasel -ldivsufsort -lm make -C impl_sse tests make[4]: Entering directory '/<>/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7IO_TESTDRIVE -o io_utest ./io.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7DECODING_TESTDRIVE -o decoding_utest ./decoding.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7FWDBACK_TESTDRIVE -o fwdback_utest ./fwdback.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7MSVFILTER_TESTDRIVE -o msvfilter_utest ./msvfilter.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7NULL2_TESTDRIVE -o null2_utest ./null2.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7OPTACC_TESTDRIVE -o optacc_utest ./optacc.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7STOTRACE_TESTDRIVE -o stotrace_utest ./stotrace.c -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -fPIC -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../../easel -L.. -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -Dp7VITFILTER_TESTDRIVE -o vitfilter_utest ./vitfilter.c -lhmmer -leasel -lm make[4]: Leaving directory '/<>/hmmer/src/impl_sse' make[3]: Leaving directory '/<>/hmmer/src' make[2]: Leaving directory '/<>/hmmer' make -C src tests make[2]: Entering directory '/<>/src' make -C impl_sse libinfernal-impl.stamp gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o itest_brute.o -c itest_brute.c make[3]: Entering directory '/<>/src/impl_sse' make[3]: 'libinfernal-impl.stamp' is up to date. make[3]: Leaving directory '/<>/src/impl_sse' {CC} -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../easel -L../hmmer/src -L./impl_sse -L. -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -DCM_TOPHITS_TESTDRIVE -o cm_tophits_utest ./cm_tophits.c -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -msse2 -msse3 -DHAVE_CONFIG_H -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o itest_brute itest_brute.o -linfernal -lhmmer -leasel -lm make -C impl_sse tests make[3]: Entering directory '/<>/src/impl_sse' make[3]: Nothing to be done for 'tests'. make[3]: Leaving directory '/<>/src/impl_sse' make[2]: Leaving directory '/<>/src' make -C easel check make[2]: Entering directory '/<>/easel' make -C miniapps check make[3]: Entering directory '/<>/easel/miniapps' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/<>/easel/miniapps' make -C testsuite check make[3]: Entering directory '/<>/easel/testsuite' Running Easel test suite... exercise 1 [ alphabet-utest] ... ok. exercise 2 [ buffer-utest] ... ok. exercise 3 [ cluster-utest] ... ok. exercise 4 [ dirichlet-utest] ... ok. exercise 5 [ distance-utest] ... ok. exercise 6 [ dmatrix-utest] ... ok. exercise 7 [ dsqdata-utest] ... ok. exercise 8 [ easel-utest] ... ok. exercise 9 [ exponential-utest] ... ok. exercise 10 [ fileparser-utest] ... ok. exercise 11 [ gamma-utest] ... ok. exercise 12 [ gencode-utest] ... ok. exercise 13 [ getopts-utest] ... ok. exercise 14 [ gumbel-utest] ... ok. exercise 15 [ heap-utest] ... ok. exercise 16 [ histogram-utest] ... ok. exercise 17 [ hyperexp-utest] ... ok. exercise 18 [ keyhash-utest] ... ok. exercise 19 [ mem-utest] ... ok. exercise 20 [ msa-utest] ... ok. exercise 21 [ msacluster-utest] ... ok. exercise 22 [ msafile] ... ok. exercise 23 [ msafile2] ... ok. exercise 24 [ msafile-a2m] ... ok. exercise 25 [ msafile-afa] ... ok. exercise 26 [ msafile-clustal] ... ok. exercise 27 [ msafile-phylip] ... ok. exercise 28 [ msafile-psiblast] ... ok. exercise 29 [ msafile-selex] ... ok. exercise 30 [ msafile-stockholm] ... ok. exercise 31 [ msaweight-utest] ... ok. exercise 32 [ normal-utest] ... ok. exercise 33 [ random-utest] ... ok. exercise 34 [ randomseq-utest] ... ok. exercise 35 [ ratematrix-utest] ... ok. exercise 36 [ recorder-utest] ... ok. exercise 37 [ regexp-utest] ... ok. exercise 38 [ rootfinder-utest] ... ok. exercise 39 [ scorematrix-utest] ... ok. exercise 40 [ sq-utest] ... ok. exercise 41 [ sqio-utest] ... ok. exercise 42 [ sse-utest] ... ok. exercise 43 [ ssi-utest] ... ok. exercise 44 [ stack-utest] ... ok. exercise 45 [ stats-utest] ... ok. exercise 46 [ stretchexp-utest] ... ok. exercise 47 [ tree-utest] ... ok. exercise 48 [ vectorops-utest] ... ok. exercise 49 [ weibull-utest] ... ok. exercise 50 [ wuss-utest] ... ok. exercise 51 [ e2] ... ok. exercise 52 [ degen-residues] ... ok. exercise 53 [ ncbi-indices] ... ok. exercise 54 [ blank-gf] ... ok. exercise 55 [ esl-translate] ... FAILED [crash!] exercise 56 [ esl-afetch] ... ok. exercise 57 [ esl-alimanip] ... ok. exercise 58 [ esl-alimap] ... ok. exercise 59 [ esl-alimask] ... ok. exercise 60 [ esl-alimerge] ... ok. exercise 61 [ esl-alistat] ... ok. exercise 62 [ esl-compalign] ... ok. exercise 63 [ esl-construct] ... ok. exercise 64 [ esl-mask] ... ok. exercise 65 [ esl-seqrange] ... ok. exercise 66 [ esl-shuffle] ... ok. exercise 67 [ esl-ssdraw] ... ok. 1 of 67 exercises at level <= 2 FAILED. System information: Mon Jul 16 17:16:34 UTC 2018 Linux lgw01-amd64-024 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 i686 i686 GNU/Linux make[3]: Leaving directory '/<>/easel/testsuite' make[2]: Leaving directory '/<>/easel' if test -d hmmer/easel && ! test -e hmmer/easel/miniapps/esl-afetch; then cp easel/miniapps/esl-afetch hmmer/easel/miniapps; fi if test -d hmmer/easel && ! test -e hmmer/easel/miniapps/esl-reformat; then cp easel/miniapps/esl-reformat hmmer/easel/miniapps; fi if test -d hmmer/easel && ! test -e hmmer/easel/miniapps/esl-sfetch; then cp easel/miniapps/esl-sfetch hmmer/easel/miniapps; fi if test -d hmmer/easel && ! test -e hmmer/easel/miniapps/esl-sfetch; then cp easel/miniapps/esl-shuffle hmmer/easel/miniapps; fi if ! test -d hmmer/easel; then cd hmmer; ln -s ../easel .; cd ..; fi if ! test -d ./hmmer/easel; then ln -s ./easel ./hmmer/easel; fi make -C hmmer/testsuite check make[2]: Entering directory '/<>/hmmer/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ logsum] ... ok. exercise 8 [ modelconfig] ... ok. exercise 9 [ seqmodel] ... ok. exercise 10 [ p7_alidisplay] ... ok. exercise 11 [ p7_bg] ... ok. exercise 12 [ p7_gmx] ... ok. exercise 13 [ p7_hmm] ... ok. exercise 14 [ p7_hmmfile] ... ok. exercise 15 [ p7_profile] ... ok. exercise 16 [ p7_tophits] ... ok. exercise 17 [ p7_trace] ... ok. exercise 18 [ p7_scoredata] ... ok. exercise 19 [ decoding] ... ok. exercise 20 [ fwdback] ... ok. exercise 21 [ io] ... ok. exercise 22 [ msvfilter] ... ok. exercise 23 [ null2] ... ok. exercise 24 [ optacc] ... ok. exercise 25 [ stotrace] ... ok. exercise 26 [ vitfilter] ... ok. exercise 27 [ hmmalign] ... ok. exercise 28 [ hmmalign/-h] ... ok. exercise 29 [ hmmalign/-o] ... ok. exercise 30 [ hmmalign/--mapali] ... ok. exercise 31 [ hmmalign/--trim] ... ok. exercise 32 [ hmmalign/--amino] ... ok. exercise 33 [ hmmalign/--informat] ... ok. exercise 34 [ hmmalign/--outformat] ... ok. exercise 35 [ build] ... ok. exercise 36 [ build/-h] ... ok. exercise 37 [ build/-n] ... ok. exercise 38 [ build/-o] ... ok. exercise 39 [ build/-O] ... ok. exercise 40 [ build/--amino] ... ok. exercise 41 [ build/--dna] ... ok. exercise 42 [ build/--rna] ... ok. exercise 43 [ build/--fast] ... ok. exercise 44 [ build/--hand] ... ok. exercise 45 [ build/--symfrac] ... ok. exercise 46 [ build/--fragthresh] ... ok. exercise 47 [ build/--wpb] ... ok. exercise 48 [ build/--wgsc] ... ok. exercise 49 [ build/--wblosum] ... ok. exercise 50 [ build/--wnone] ... ok. exercise 51 [ build/--wid] ... ok. exercise 52 [ build/--eent] ... ok. exercise 53 [ build/--eclust] ... ok. exercise 54 [ build/--enone] ... ok. exercise 55 [ build/--eset] ... ok. exercise 56 [ build/--ere] ... ok. exercise 57 [ build/--esigma] ... ok. exercise 58 [ build/--eid] ... ok. exercise 59 [ build/--pnone] ... ok. exercise 60 [ build/--plaplace] ... ok. exercise 61 [ build/--EmL] ... ok. exercise 62 [ build/--EmN] ... ok. exercise 63 [ build/--EvL] ... ok. exercise 64 [ build/--EvN] ... ok. exercise 65 [ build/--EfL] ... ok. exercise 66 [ build/--EfN] ... ok. exercise 67 [ build/--Eft] ... ok. exercise 68 [ build/--informat] ... ok. exercise 69 [ build/--seed] ... ok. exercise 70 [ hmmemit] ... ok. exercise 71 [ hmmemit/-h] ... ok. exercise 72 [ hmmemit/-c] ... ok. exercise 73 [ hmmemit/-o] ... ok. exercise 74 [ hmmemit/-p] ... ok. exercise 75 [ hmmemit/-N] ... ok. exercise 76 [ hmmemit/-L] ... ok. exercise 77 [ hmmemit/--local] ... ok. exercise 78 [ hmmemit/--unilocal] ... ok. exercise 79 [ hmmemit/--glocal] ... ok. exercise 80 [ hmmemit/--uniglocal] ... ok. exercise 81 [ search] ... ok. exercise 82 [ search/-h] ... ok. exercise 83 [ search/-o] ... ok. exercise 84 [ search/-A] ... ok. exercise 85 [ search/--tblout] ... ok. exercise 86 [ search/--domtblout] ... ok. exercise 87 [ search/--pfamtblout] ... ok. exercise 88 [ search/--acc] ... ok. exercise 89 [ search/--noali] ... ok. exercise 90 [ search/--notextw] ... ok. exercise 91 [ search/--textw] ... ok. exercise 92 [ search/-E] ... ok. exercise 93 [ search/-T] ... ok. exercise 94 [ search/--domE] ... ok. exercise 95 [ search/--domT] ... ok. exercise 96 [ search/--incE] ... ok. exercise 97 [ search/--incT] ... ok. exercise 98 [ search/--incdomE] ... ok. exercise 99 [ search/--incdomT] ... ok. exercise 100 [ search/--cut_ga] ... ok. exercise 101 [ search/--cut_nc] ... ok. exercise 102 [ search/--cut_tc] ... ok. exercise 103 [ search/--max] ... ok. exercise 104 [ search/--F1] ... ok. exercise 105 [ search/--F2] ... ok. exercise 106 [ search/--F3] ... ok. exercise 107 [ search/--nobias] ... ok. exercise 108 [ search/--nonull2] ... ok. exercise 109 [ search/-Z] ... ok. exercise 110 [ search/--domZ] ... ok. exercise 111 [ search/--seed] ... ok. exercise 112 [ search/--tformat] ... ok. exercise 113 [ jackhmmer] ... ok. exercise 114 [ j/-h] ... ok. exercise 115 [ j/-N] ... ok. exercise 116 [ j/-o] ... ok. exercise 117 [ j/-A] ... ok. exercise 118 [ j/--tblout] ... ok. exercise 119 [ j/--domtblout] ... ok. exercise 120 [ j/--chkhmm] ... ok. exercise 121 [ j/--chkali] ... ok. exercise 122 [ j/--acc] ... ok. exercise 123 [ j/--noali] ... ok. exercise 124 [ j/--notextw] ... ok. exercise 125 [ j/--textw] ... ok. exercise 126 [ j/--popen] ... ok. exercise 127 [ j/--pextend] ... ok. exercise 128 [ j/--mxfile] ... ok. exercise 129 [ j/-E] ... ok. exercise 130 [ j/-T] ... ok. exercise 131 [ j/--domE] ... ok. exercise 132 [ j/--domT] ... ok. exercise 133 [ j/--incE] ... ok. exercise 134 [ j/--incT] ... ok. exercise 135 [ j/--incdomE] ... ok. exercise 136 [ j/--incdomT] ... ok. exercise 137 [ j/--max] ... ok. exercise 138 [ j/--F1] ... ok. exercise 139 [ j/--F2] ... ok. exercise 140 [ j/--F3] ... ok. exercise 141 [ j/--nobias] ... ok. exercise 142 [ j/--EmL] ... ok. exercise 143 [ j/--EmN] ... ok. exercise 144 [ j/--EvL] ... ok. exercise 145 [ j/--EvN] ... ok. exercise 146 [ j/--EfL] ... ok. exercise 147 [ j/--EfN] ... ok. exercise 148 [ j/--Eft] ... ok. exercise 149 [ j/--nonull2] ... ok. exercise 150 [ j/-Z] ... ok. exercise 151 [ j/--domZ] ... ok. exercise 152 [ j/--seed] ... ok. exercise 153 [ j/--qformat] ... ok. exercise 154 [ j/--tformat] ... ok. exercise 155 [ phmmer] ... ok. exercise 156 [ phmmer/-h] ... ok. exercise 157 [ phmmer/-o] ... ok. exercise 158 [ phmmer/-A] ... ok. exercise 159 [ phmmer/--tblout] ... ok. exercise 160 [ phmmer/--domtblout] ... ok. exercise 161 [ phmmer/--pfamtblout] ... ok. exercise 162 [ phmmer/--acc] ... ok. exercise 163 [ phmmer/--noali] ... ok. exercise 164 [ phmmer/--notextw] ... ok. exercise 165 [ phmmer/--textw] ... ok. exercise 166 [ phmmer/--popen] ... ok. exercise 167 [ phmmer/--pextend] ... ok. exercise 168 [ phmmer/--mxfile] ... ok. exercise 169 [ phmmer/-E] ... ok. exercise 170 [ phmmer/-T] ... ok. exercise 171 [ phmmer/--domE] ... ok. exercise 172 [ phmmer/--domT] ... ok. exercise 173 [ phmmer/--incE] ... ok. exercise 174 [ phmmer/--incT] ... ok. exercise 175 [ phmmer/--incdomE] ... ok. exercise 176 [ phmmer/--incdomT] ... ok. exercise 177 [ phmmer/--max] ... ok. exercise 178 [ phmmer/--F1] ... ok. exercise 179 [ phmmer/--F2] ... ok. exercise 180 [ phmmer/--F3] ... ok. exercise 181 [ phmmer/--nobias] ... ok. exercise 182 [ phmmer/--EmL] ... ok. exercise 183 [ phmmer/--EmN] ... ok. exercise 184 [ phmmer/--EvL] ... ok. exercise 185 [ phmmer/--EvN] ... ok. exercise 186 [ phmmer/--EfL] ... ok. exercise 187 [ phmmer/--EfN] ... ok. exercise 188 [ phmmer/--Eft] ... ok. exercise 189 [ phmmer/--nonull2] ... ok. exercise 190 [ phmmer/-Z] ... ok. exercise 191 [ phmmer/--domZ] ... ok. exercise 192 [ phmmer/--seed] ... ok. exercise 193 [ phmmer/--qformat] ... ok. exercise 194 [ phmmer/--tformat] ... ok. exercise 195 [ nhmmer] ... ok. exercise 196 [ nhmmer/-h] ... ok. exercise 197 [ nhmmer/-o] ... ok. exercise 198 [ nhmmer/-A] ... ok. exercise 199 [ nhmmer/--tblout] ... ok. exercise 200 [ nhmmer/--dfamtblout] ... ok. exercise 201 [ nhmmer/--acc] ... ok. exercise 202 [ nhmmer/--noali] ... ok. exercise 203 [ nhmmer/--notextw] ... ok. exercise 204 [ nhmmer/--textw] ... ok. exercise 205 [ nhmmer/-E] ... ok. exercise 206 [ nhmmer/-T] ... ok. exercise 207 [ nhmmer/--incE] ... ok. exercise 208 [ nhmmer/--incT] ... ok. exercise 209 [ nhmmer/--max] ... ok. exercise 210 [ nhmmer/--F1] ... ok. exercise 211 [ nhmmer/--F2] ... ok. exercise 212 [ nhmmer/--F3] ... ok. exercise 213 [ nhmmer/--nobias] ... ok. exercise 214 [ nhmmer/--nonull2] ... ok. exercise 215 [ nhmmer/-Z] ... ok. exercise 216 [ nhmmer/--seed] ... ok. exercise 217 [ nhmmscan] ... ok. exercise 218 [ nhmmscan/-h] ... ok. exercise 219 [ nhmmscan/-o] ... ok. exercise 220 [ nhmmscan/--tblout] ... ok. exercise 221 [nhmmscan/--dfamtblout] ... ok. exercise 222 [ nhmmscan/--acc] ... ok. exercise 223 [ nhmmscan/--noali] ... ok. exercise 224 [ nhmmscan/--notextw] ... ok. exercise 225 [ nhmmscan/--textw] ... ok. exercise 226 [ nhmmscan/-E] ... ok. exercise 227 [ nhmmscan/-T] ... ok. exercise 228 [ nhmmscan/--incE] ... ok. exercise 229 [ nhmmscan/--incT] ... ok. exercise 230 [ nhmmscan/--max] ... ok. exercise 231 [ nhmmscan/--F1] ... ok. exercise 232 [ nhmmscan/--F2] ... ok. exercise 233 [ nhmmscan/--F3] ... ok. exercise 234 [ nhmmscan/--nobias] ... ok. exercise 235 [ nhmmscan/--nonull2] ... ok. exercise 236 [ nhmmscan/-Z] ... ok. exercise 237 [ nhmmscan/--seed] ... ok. exercise 238 [ hmmbuild_variation] ... ok. exercise 239 [ hmmscan_variation] ... ok. exercise 240 [ hmmsearch_variation] ... ok. exercise 241 [ phmmer_variation] ... ok. exercise 242 [ mapali] ... ok. exercise 243 [ fragments] ... ok. exercise 244 [ nonresidues] ... ok. exercise 245 [ opt-annotation] ... ok. exercise 246 [ dup-names] ... ok. exercise 247 [ mapali-again] ... ok. exercise 248 [ delete-corruption] ... ok. exercise 249 [ msa-integrity] ... ok. exercise 250 [ hmmemit-consensus] ... ok. exercise 251 [ hmmconvert] ... ok. exercise 252 [ stdin_pipes] ... ok. exercise 253 [ nhmmer_generic] ... ok. exercise 254 [ hmmpgmd_ga] ... ok. exercise 255 [ brute-itest] ... ok. exercise 256 [ hmmpress-itest] ... ok. exercise 257 [ h39] ... ok. exercise 258 [ h45] ... ok. exercise 259 [ h50] ... ok. exercise 260 [ h82] ... ok. All 260 exercises at level <= 2 passed. System information: Mon Jul 16 17:17:47 UTC 2018 Linux lgw01-amd64-024 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 i686 i686 GNU/Linux make[2]: Leaving directory '/<>/hmmer/testsuite' if test -L hmmer/easel; then rm hmmer/easel; fi if test -L ./hmmer/easel; then rm ./hmmer/easel; fi if test -e hmmer/easel/miniapps/esl-afetch; then rm hmmer/easel/miniapps/esl-afetch; fi if test -e hmmer/easel/miniapps/esl-reformat; then rm hmmer/easel/miniapps/esl-reformat; fi if test -e hmmer/easel/miniapps/esl-sfetch; then rm hmmer/easel/miniapps/esl-sfetch; fi if test -e hmmer/easel/miniapps/esl-shuffle; then rm hmmer/easel/miniapps/esl-shuffle; fi make -C testsuite check make[2]: Entering directory '/<>/testsuite' Running Infernal test suite... exercise 1 [ utest/cm_tophits] ... ok. exercise 2 [ itest/mapali] ... ok. exercise 3 [ itest/dup-names] ... ok. exercise 4 [ itest/msa-integrity] ... ok. exercise 5 [ itest/stdin-pipes] ... ok. exercise 6 [ itest/pipeline] ... ok. exercise 7 [ itest/sensitivity] ... ok. exercise 8 [ itest/trunc] ... ok. exercise 9 [ itest/scan-glist] ... ok. exercise 10 [ itest/scan-overlaps] ... ok. exercise 11 [ itest/brute] ... ok. exercise 12 [ bug/i1-vault-sscons] ... ok. exercise 13 [ bug/i2-cmalign-leak] ... ok. exercise 14 [ bug/i11-bld-detach] ... ok. exercise 15 [ bug/i12-aln-outside] ... ok. exercise 16 [ bug/i13-aln-sub] ... ok. exercise 17 [ bug/i14-aln-oa-zero] ... ok. exercise 18 [ bug/i15-aln-bif-imp] ... ok. exercise 19 [ bug/i28-srch-bndcln] ... ok. exercise 20 [ bug/i29-cnv-1p0-nft] ... ok. exercise 21 [ bug/i30-srch-zeroln] ... ok. exercise 22 [ bug/i31-neg-dbsize] ... ok. exercise 23 [ bug/i32-refine-ss] ... ok. exercise 24 [ bug/i33-cmsearch-A] ... ok. exercise 25 [ bug/i34-cmalign-EL] ... ok. exercise 26 [ bug/i36-hbanded-tb] ... ok. exercise 27 [ bug/i37-bandshift] ... ok. exercise 28 [ bug/i38-mapali-noss] ... ok. exercise 29 [ bug/i39-build-O-0bp] ... ok. exercise 30 [ bug/i43-oa-loc-beg] ... ok. exercise 31 [ bug/i44-mapstr] ... ok. exercise 32 [ build/help/1] ... ok. exercise 33 [ build/help/2] ... ok. exercise 34 [ build/t] ... ok. exercise 35 [ build/v/o] ... ok. exercise 36 [ build/s/O] ... ok. exercise 37 [ build/zbp/O] ... ok. exercise 38 [ build/4/O] ... ok. exercise 39 [ search/help/1] ... ok. exercise 40 [ search/help/2] ... ok. exercise 41 [ search/t] ... ok. exercise 42 [ search/v] ... ok. exercise 43 [ search/s] ... ok. exercise 44 [ search/4] ... ok. exercise 45 [ search/zbp] ... ok. exercise 46 [ search/t/A] ... ok. exercise 47 [ search/4/A] ... ok. exercise 48 [ search/zbp/A] ... ok. exercise 49 [ stat/help/1] ... ok. exercise 50 [ stat/t] ... ok. exercise 51 [ stat/v] ... ok. exercise 52 [ stat/s] ... ok. exercise 53 [ stat/z] ... ok. exercise 54 [ stat/tC] ... ok. exercise 55 [ stat/vC] ... ok. exercise 56 [ stat/sC] ... ok. exercise 57 [ stat/zC] ... ok. exercise 58 [ press/tC] ... ok. exercise 59 [ press/vC] ... ok. exercise 60 [ press/sC] ... ok. exercise 61 [ press/zC] ... ok. exercise 62 [ press/4C] ... ok. exercise 63 [ press/5C] ... ok. exercise 64 [ scan/help/1] ... ok. exercise 65 [ scan/help/2] ... ok. exercise 66 [ scan/tC] ... ok. exercise 67 [ scan/vC] ... ok. exercise 68 [ scan/sC] ... ok. exercise 69 [ scan/zC] ... ok. exercise 70 [ scan/4C] ... ok. exercise 71 [ scan/5C] ... ok. exercise 72 [ emit/help/1] ... ok. exercise 73 [ emit/t] ... ok. exercise 74 [ emit/v] ... ok. exercise 75 [ emit/s] ... ok. exercise 76 [ emit/4] ... ok. exercise 77 [ emit/z] ... ok. exercise 78 [ emit/tC] ... ok. exercise 79 [ emit/vC] ... ok. exercise 80 [ emit/sC] ... ok. exercise 81 [ emit/4C] ... ok. exercise 82 [ emit/zC] ... ok. exercise 83 [ convert/help/1] ... ok. exercise 84 [ convert/t] ... ok. exercise 85 [ convert/v] ... ok. exercise 86 [ convert/s] ... ok. exercise 87 [ convert/4] ... ok. exercise 88 [ convert-emit/t] ... ok. exercise 89 [ convert-emit/v] ... ok. exercise 90 [ convert-emit/s] ... ok. exercise 91 [ convert-emit/4] ... ok. exercise 92 [ convert/t/b] ... ok. exercise 93 [ convert/v/b] ... ok. exercise 94 [ convert/s/b] ... ok. exercise 95 [ convert/4/b] ... ok. exercise 96 [ convert-emit/t/b] ... ok. exercise 97 [ convert-emit/v/b] ... ok. exercise 98 [ convert-emit/s/b] ... ok. exercise 99 [ convert-emit/4/b] ... ok. exercise 100 [ convert/t/1] ... ok. exercise 101 [ convert/v/1] ... ok. exercise 102 [ convert/s/1] ... ok. exercise 103 [ convert/4/1] ... ok. exercise 104 [ convert/t/1back] ... ok. exercise 105 [ convert/v/1back] ... ok. exercise 106 [ convert/s/1back] ... ok. exercise 107 [ convert/4/1back] ... ok. exercise 108 [ convert-emit/t/b] ... ok. exercise 109 [ convert-emit/v/b] ... ok. exercise 110 [ convert-emit/s/b] ... ok. exercise 111 [ convert-emit/4/b] ... ok. exercise 112 [ convertC/t] ... ok. exercise 113 [ convertC/v] ... ok. exercise 114 [ convertC/s] ... ok. exercise 115 [ convertC/4] ... ok. exercise 116 [ convertC-emit/t] ... ok. exercise 117 [ convertC-emit/v] ... ok. exercise 118 [ convertC-emit/s] ... ok. exercise 119 [ convertC-emit/4] ... ok. exercise 120 [ align/help/1] ... ok. exercise 121 [ align/t/1] ... ok. exercise 122 [ align/t/2] ... ok. exercise 123 [ calibrate/help/1] ... ok. exercise 124 [ calibrate/tFC] ... ok. exercise 125 [ calibrate/se] ... ok. exercise 126 [ fetch/4/index] ... ok. exercise 127 [ fetch/4/f] ... ok. exercise 128 [ fetch/4/o] ... ok. exercise 129 [ fetch/4/O] ... ok. exercise 130 [ emit/4/O] ... ok. exercise 131 [ fetch/4C/index] ... ok. exercise 132 [ fetch/4C/f] ... ok. exercise 133 [ fetch/4C/o] ... ok. exercise 134 [ fetch/4C/O] ... ok. exercise 135 [ emit/4C/O] ... ok. exercise 136 [ bandcykmc/trna] ... ok. exercise 137 [ bandcyktrunc/trna] ... ok. exercise 138 [ cp9/trna/1] ... ok. exercise 139 [ cp9/trna/2] ... ok. exercise 140 [ cp9/rp] ... ok. exercise 141 [ sub/trna1] ... ok. exercise 142 [ sub/rp] ... ok. exercise 143 [ sub/trna2] ... ok. All 143 exercises at level <= 1 passed. System information: Mon Jul 16 17:32:56 UTC 2018 Linux lgw01-amd64-024 4.4.0-128-generic #154-Ubuntu SMP Fri May 25 14:15:18 UTC 2018 i686 i686 i686 GNU/Linux make[2]: Leaving directory '/<>/testsuite' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' /usr/bin/make install prefix=/<>/debian/tmp make[2]: Entering directory '/<>' /usr/bin/install -c -d /<>/debian/tmp/bin /usr/bin/install -c -d /<>/debian/tmp/share/man/man1 /usr/bin/install -c -d /<>/debian/tmp/share/doc/infernal /usr/bin/make -C src install make[3]: Entering directory '/<>/src' for file in cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmscan cmsearch cmstat; do \ /usr/bin/install -c -m 0755 $file /<>/debian/tmp/bin/ ;\ done make[3]: Leaving directory '/<>/src' /usr/bin/make -C documentation install make[3]: Entering directory '/<>/documentation' /usr/bin/make -C manpages install make[4]: Entering directory '/<>/documentation/manpages' for file in infernal cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmsearch cmscan cmstat; do \ /usr/bin/install -c -m 0755 ./$file.man /<>/debian/tmp/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/<>/documentation/manpages' make[3]: Leaving directory '/<>/documentation' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install for bin in `ls /<>/debian/infernal/usr/lib/infernal` ; do \ if [ $bin != cmalign ] ; then \ ln -s cmalign /<>/debian/infernal/usr/bin/$bin ; \ fi ; \ done make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples mkdir -p /<>/debian/infernal/usr/share/doc/infernal/examples/src/; mkdir -p /<>/debian/infernal/usr/share/doc/infernal/examples/easel/miniapps/; find ./src -name "*test" -exec cp \{\} /<>/debian/infernal/usr/share/doc/infernal/examples/src/ \; cp ./src/itest_brute /<>/debian/infernal/usr/share/doc/infernal/examples/src/; cp ./easel/miniapps/esl-reformat /<>/debian/infernal/usr/share/doc/infernal/examples/easel/miniapps/; cp ./easel/miniapps/esl-shuffle /<>/debian/infernal/usr/share/doc/infernal/examples/easel/miniapps/; cp ./easel/miniapps/esl-sfetch /<>/debian/infernal/usr/share/doc/infernal/examples/easel/miniapps/; cp -aR testsuite /<>/debian/infernal/usr/share/doc/infernal/examples/; cp ./easel/devkit/sqc /<>/debian/infernal/usr/share/doc/infernal/examples/; make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a INFO: pkgstriptranslations version 140 INFO: pkgstriptranslations version 140 pkgstriptranslations: processing infernal (in debian/infernal); do_strip: , oemstrip: pkgstriptranslations: processing infernal-dbgsym (in debian/.debhelper/infernal/dbgsym-root); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/.debhelper/infernal/dbgsym-root/DEBIAN/control, package infernal-dbgsym, directory debian/.debhelper/infernal/dbgsym-root pkgstripfiles: Running PNG optimization (using 4 cpus) for package infernal-dbgsym ... pkgstripfiles: processing control file: debian/infernal/DEBIAN/control, package infernal, directory debian/infernal pkgstripfiles: No PNG files. dpkg-deb: building package 'infernal-dbgsym' in 'debian/.debhelper/scratch-space/build-infernal/infernal-dbgsym_1.1.2-2_i386.deb'. pkgstripfiles: Truncating usr/share/doc/infernal/changelog.Debian.gz to topmost ten records pkgstripfiles: Running PNG optimization (using 4 cpus) for package infernal ... pkgstripfiles: No PNG files. dpkg-deb: building package 'infernal' in '../infernal_1.1.2-2_i386.deb'. Renaming infernal-dbgsym_1.1.2-2_i386.deb to infernal-dbgsym_1.1.2-2_i386.ddeb dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../infernal_1.1.2-2_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build infernal-1.1.2 dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180716-1734 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ infernal_1.1.2-2_i386.changes: ------------------------------ Format: 1.8 Date: Mon, 16 Jul 2018 12:20:32 +0200 Source: infernal Binary: infernal infernal-doc Architecture: i386 Version: 1.1.2-2 Distribution: cosmic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Andreas Tille Description: infernal - inference of RNA secondary structural alignments infernal-doc - inference of RNA secondary structural alignments – documentation Changes: infernal (1.1.2-2) unstable; urgency=medium . * Fix homepage * Add debian/TODO: remove code copy of hmmer * debhelper 10 * d/watch: version=4 * Added references to RRID and OMICtools registries (Steffen Moeller) * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Fix configure.ac to enable autoreconf * Fix spelling Checksums-Sha1: b94a68421f02bbd0872fa49be0d8b99111dcfcbd 13984756 infernal-dbgsym_1.1.2-2_i386.ddeb 412ab95623c056c6faf5f432ef400a4633d48795 4976 infernal_1.1.2-2_i386.buildinfo ee8cf137c3f91d4b8485d5323284d0a03376e67b 20061244 infernal_1.1.2-2_i386.deb Checksums-Sha256: 3ea16d3c86541dc7d546099d31188595778dc056fbe8b948b07092dca0f611f2 13984756 infernal-dbgsym_1.1.2-2_i386.ddeb cfcc8692ca5a43d0542f7e69ff9921c95d2c2155cc4137d9cbcf07114df97783 4976 infernal_1.1.2-2_i386.buildinfo 85d28f3f61b72b5de740d63a0117fe500324dea06f1ba40d131dd706f01a08e1 20061244 infernal_1.1.2-2_i386.deb Files: 161fbb230b60c63c2672953bd0f92c23 13984756 debug optional infernal-dbgsym_1.1.2-2_i386.ddeb 696d59cefb22bd6a143ce1832bea3980 4976 science optional infernal_1.1.2-2_i386.buildinfo 45071a0970a3d67d2d4526b2723a7e22 20061244 science optional infernal_1.1.2-2_i386.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ infernal_1.1.2-2_i386.deb ------------------------- new debian package, version 2.0. size 20061244 bytes: control archive=4968 bytes. 975 bytes, 21 lines control 14272 bytes, 167 lines md5sums Package: infernal Version: 1.1.2-2 Architecture: i386 Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 41484 Depends: libc6 (>= 2.27) Section: science Priority: optional Homepage: http://eddylab.org/infernal/ Description: inference of RNA secondary structural alignments Infernal ("INFERence of RNA ALignment") searches DNA sequence databases for RNA structure and sequence similarities. It provides an implementation of a special variant of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence. . The tool is an integral component of the Rfam database. drwxr-xr-x root/root 0 2018-07-16 10:20 ./ drwxr-xr-x root/root 0 2018-07-16 10:20 ./usr/ drwxr-xr-x root/root 0 2018-07-16 10:20 ./usr/bin/ -rwxr-xr-x root/root 269 2018-07-16 10:20 ./usr/bin/cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmbuild -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmcalibrate -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmconvert -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmemit -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmfetch -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmpress -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmscan -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmsearch -> cmalign lrwxrwxrwx root/root 0 2018-07-16 10:20 ./usr/bin/cmstat -> cmalign drwxr-xr-x root/root 0 2018-07-16 10:20 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-16 10:20 ./usr/lib/infernal/ 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+------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: i386 Build-Space: 445256 Build-Time: 1274 Distribution: cosmic-proposed Host Architecture: i386 Install-Time: 20 Job: infernal_1.1.2-2.dsc Machine Architecture: amd64 Package: infernal Package-Time: 1297 Source-Version: 1.1.2-2 Space: 445256 Status: successful Version: 1.1.2-2 -------------------------------------------------------------------------------- Finished at 20180716-1734 Build needed 00:21:37, 445256k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=cosmic --arch=i386 PACKAGEBUILD-15131353 Scanning for processes to kill in build PACKAGEBUILD-15131353