https://launchpad.net/ubuntu/+source/iva/1.0.9+ds-4ubuntu1/+build/14534865 RUN: /usr/share/launchpad-buildd/slavebin/slave-prep Forking launchpad-buildd slave process... Kernel version: Linux bos02-ppc64el-009 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:02 UTC 2018 ppc64le Buildd toolchain package versions: launchpad-buildd_160 python-lpbuildd_160 sbuild_0.67.0-2ubuntu7.1 bzr-builder_0.7.3+bzr174~ppa13~ubuntu14.10.1 bzr_2.7.0-2ubuntu3.1 git-build-recipe_0.3.4~git201611291343.dcee459~ubuntu16.04.1 git_1:2.7.4-0ubuntu1.3 dpkg-dev_1.18.4ubuntu1.4 python-debian_0.1.27ubuntu2. Syncing the system clock with the buildd NTP service... 5 Apr 10:34:45 ntpdate[1780]: adjust time server 10.211.37.1 offset 0.000863 sec RUN: /usr/share/launchpad-buildd/slavebin/in-target unpack-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 /home/buildd/filecache-default/64ab4a3b1843816d631a3747c16f42fa2d8de59d Creating target for build PACKAGEBUILD-14534865 RUN: /usr/share/launchpad-buildd/slavebin/in-target mount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 Starting target for build PACKAGEBUILD-14534865 RUN: /usr/share/launchpad-buildd/slavebin/in-target override-sources-list --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 'deb http://ftpmaster.internal/ubuntu bionic main universe' 'deb http://ftpmaster.internal/ubuntu bionic-security main universe' 'deb http://ftpmaster.internal/ubuntu bionic-updates main universe' 'deb http://ftpmaster.internal/ubuntu bionic-proposed main universe' Overriding sources.list in build-PACKAGEBUILD-14534865 RUN: /usr/share/launchpad-buildd/slavebin/in-target update-debian-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 Updating target for build PACKAGEBUILD-14534865 Get:1 http://ftpmaster.internal/ubuntu bionic InRelease [235 kB] Get:2 http://ftpmaster.internal/ubuntu bionic-security InRelease [65.4 kB] Get:3 http://ftpmaster.internal/ubuntu bionic-updates InRelease [65.4 kB] Get:4 http://ftpmaster.internal/ubuntu bionic-proposed InRelease [235 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el Packages [972 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main Translation-en [514 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/universe ppc64el Packages [8163 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/universe Translation-en [4936 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el Packages [29.7 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main Translation-en [19.4 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/universe ppc64el Packages [252 kB] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/universe Translation-en [109 kB] Fetched 15.6 MB in 3s (4677 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 Use 'sudo apt autoremove' to remove them. The following NEW packages will be installed: dirmngr gcc-8-base gnupg-l10n gnupg-utils gpg gpg-agent gpg-wks-client gpg-wks-server gpgconf gpgsm libargon2-0 libcom-err2 libcryptsetup12 libext2fs2 libgdbm-compat4 libgdbm5 libisl19 libjson-c3 liblsan0 libmpfr6 libnghttp2-14 libssl1.1 libtsan0 libunistring2 The following packages will be upgraded: adduser advancecomp apt apt-transport-https base-files base-passwd bash binutils binutils-common binutils-powerpc64le-linux-gnu bsdutils build-essential coreutils cpp cpp-7 dash debconf debianutils dmsetup dpkg dpkg-dev e2fslibs e2fsprogs fakeroot fdisk findutils g++ g++-7 gcc gcc-7 gcc-7-base gnupg gnupg-agent gpgv hostname init init-system-helpers libapparmor1 libapt-pkg5.0 libasan4 libasn1-8-heimdal libassuan0 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcomerr2 libcurl3-gnutls libdevmapper1.02.1 libdpkg-perl libfakeroot libfdisk1 libffi6 libgcc-7-dev libgcc1 libgcrypt20 libgmp10 libgnutls30 libgomp1 libgpg-error0 libgssapi-krb5-2 libgssapi3-heimdal libhcrypto4-heimdal libheimbase1-heimdal libheimntlm0-heimdal libhogweed4 libhx509-5-heimdal libidn11 libidn2-0 libip4tc0 libisl15 libitm1 libk5crypto3 libkeyutils1 libkmod2 libkrb5-26-heimdal libkrb5-3 libkrb5support0 liblockfile-bin liblockfile1 liblz4-1 libmount1 libmpc3 libncurses5 libncursesw5 libnettle6 libnpth0 libp11-kit0 libpam-modules libpam-modules-bin libpam-runtime libpam0g libpcre3 libperl5.26 libpng16-16 libprocps6 libpsl5 libreadline7 libroken18-heimdal libsasl2-2 libsasl2-modules-db libseccomp2 libselinux1 libsemanage-common libsemanage1 libslang2 libsmartcols1 libsqlite3-0 libss2 libssl1.0.0 libstdc++-7-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo5 libubsan0 libudev1 libuuid1 libwind0-heimdal linux-libc-dev login lsb-base mawk mount multiarch-support ncurses-base ncurses-bin openssl optipng passwd patch perl perl-base perl-modules-5.26 pinentry-curses pkgbinarymangler procps readline-common sed sensible-utils systemd systemd-sysv sysvinit-utils tzdata ubuntu-keyring util-linux 154 upgraded, 24 newly installed, 0 to remove and 0 not upgraded. Need to get 70.6 MB of archives. After this operation, 28.3 MB of additional disk space will be used. Get:1 http://ftpmaster.internal/ubuntu bionic/main ppc64el perl-modules-5.26 all 5.26.1-5 [2761 kB] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgdbm5 ppc64el 1.14.1-6 [26.8 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgdbm-compat4 ppc64el 1.14.1-6 [6140 B] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libperl5.26 ppc64el 5.26.1-5 [3429 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el perl ppc64el 5.26.1-5 [202 kB] Get:6 http://ftpmaster.internal/ubuntu bionic/main ppc64el perl-base ppc64el 5.26.1-5 [1303 kB] Get:7 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libc6-dev ppc64el 2.27-0ubuntu3 [2555 kB] Get:8 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libc-dev-bin ppc64el 2.27-0ubuntu3 [69.7 kB] Get:9 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el linux-libc-dev ppc64el 4.15.0-15.16 [1000 kB] Get:10 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libc6 ppc64el 2.27-0ubuntu3 [2719 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libc-bin ppc64el 2.27-0ubuntu3 [614 kB] Get:12 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-8-base ppc64el 8-20180402-1ubuntu1 [18.0 kB] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc1 ppc64el 1:8-20180402-1ubuntu1 [29.4 kB] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el init-system-helpers all 1.51 [37.3 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-files ppc64el 10ubuntu1 [55.9 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el debianutils ppc64el 4.8.4 [85.8 kB] Get:17 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el bash ppc64el 4.4.18-2ubuntu1 [679 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdutils ppc64el 1:2.31.1-0.4ubuntu3 [61.7 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el coreutils ppc64el 8.28-1ubuntu1 [1272 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg ppc64el 1.19.0.5ubuntu1 [1144 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el dash ppc64el 0.5.8-2.10 [104 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcom-err2 ppc64el 1.44.1-1 [9996 B] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcomerr2 ppc64el 1.44.1-1 [2696 B] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libext2fs2 ppc64el 1.44.1-1 [173 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el e2fslibs ppc64el 1.44.1-1 [2700 B] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el e2fsprogs ppc64el 1.44.1-1 [401 kB] Get:27 http://ftpmaster.internal/ubuntu bionic/main ppc64el findutils ppc64el 4.6.0+git+20170828-2 [314 kB] Get:28 http://ftpmaster.internal/ubuntu bionic/main ppc64el hostname ppc64el 3.20 [11.5 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el login ppc64el 1:4.5-1ubuntu1 [308 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el libncurses5 ppc64el 6.1-1ubuntu1 [101 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtinfo5 ppc64el 6.1-1ubuntu1 [91.5 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el ncurses-bin ppc64el 6.1-1ubuntu1 [171 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el libncursesw5 ppc64el 6.1-1ubuntu1 [120 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el sed ppc64el 4.4-2 [197 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libuuid1 ppc64el 2.31.1-0.4ubuntu3 [20.8 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libblkid1 ppc64el 2.31.1-0.4ubuntu3 [133 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsmartcols1 ppc64el 2.31.1-0.4ubuntu3 [88.8 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfdisk1 ppc64el 2.31.1-0.4ubuntu3 [167 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpcre3 ppc64el 2:8.39-9 [224 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el libselinux1 ppc64el 2.7-2build2 [78.4 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmount1 ppc64el 2.31.1-0.4ubuntu3 [143 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el fdisk ppc64el 2.31.1-0.4ubuntu3 [110 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el util-linux ppc64el 2.31.1-0.4ubuntu3 [903 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/main ppc64el base-passwd ppc64el 3.5.44 [50.1 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/main ppc64el ncurses-base all 6.1-1ubuntu1 [17.3 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el sysvinit-utils ppc64el 2.88dsf-59.10ubuntu1 [20.6 kB] Get:47 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el liblz4-1 ppc64el 0.0~r131-2ubuntu3 [50.0 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++6 ppc64el 8-20180402-1ubuntu1 [442 kB] Get:49 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libudev1 ppc64el 237-3ubuntu7 [59.9 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/main ppc64el libapt-pkg5.0 ppc64el 1.6~beta1 [900 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el libaudit-common all 1:2.8.2-1ubuntu1 [4132 B] Get:52 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap-ng0 ppc64el 0.7.7-3.1 [11.6 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/main ppc64el libaudit1 ppc64el 1:2.8.2-1ubuntu1 [41.9 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/main ppc64el debconf all 1.5.66 [124 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpam0g ppc64el 1.1.8-3.6ubuntu1 [58.4 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage-common all 2.7-2build2 [6904 B] Get:57 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsemanage1 ppc64el 2.7-2build2 [85.4 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpam-modules-bin ppc64el 1.1.8-3.6ubuntu1 [39.6 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpam-modules ppc64el 1.1.8-3.6ubuntu1 [267 kB] Get:60 http://ftpmaster.internal/ubuntu bionic/main ppc64el passwd ppc64el 1:4.5-1ubuntu1 [801 kB] Get:61 http://ftpmaster.internal/ubuntu bionic/main ppc64el adduser all 3.116ubuntu1 [163 kB] Get:62 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgpg-error0 ppc64el 1.27-6 [43.3 kB] Get:63 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcrypt20 ppc64el 1.8.1-4ubuntu1 [449 kB] Get:64 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgv ppc64el 2.2.4-1ubuntu1 [228 kB] Get:65 http://ftpmaster.internal/ubuntu bionic/main ppc64el ubuntu-keyring all 2018.02.28 [20.7 kB] Get:66 http://ftpmaster.internal/ubuntu bionic/main ppc64el libunistring2 ppc64el 0.9.9-0ubuntu1 [366 kB] Get:67 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgmp10 ppc64el 2:6.1.2+dfsg-2 [218 kB] Get:68 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnettle6 ppc64el 3.4-1 [138 kB] Get:69 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhogweed4 ppc64el 3.4-1 [136 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libidn2-0 ppc64el 2.0.4-1.1build2 [49.2 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el libffi6 ppc64el 3.2.1-8 [21.7 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el libp11-kit0 ppc64el 0.23.9-2 [167 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtasn1-6 ppc64el 4.13-2 [40.1 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgnutls30 ppc64el 3.5.18-1ubuntu1 [587 kB] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el libseccomp2 ppc64el 2.3.1-2.1ubuntu4 [47.3 kB] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el apt ppc64el 1.6~beta1 [1199 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libargon2-0 ppc64el 0~20161029-1.1 [20.3 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjson-c3 ppc64el 0.12.1-1.3 [21.7 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdevmapper1.02.1 ppc64el 2:1.02.145-4.1ubuntu2 [145 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcryptsetup12 ppc64el 2:2.0.1-0ubuntu2 [158 kB] Get:81 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libapparmor1 ppc64el 2.12-4ubuntu4 [33.1 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcap2 ppc64el 1:2.25-1.2 [13.5 kB] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el libidn11 ppc64el 1.33-2.1ubuntu1 [46.3 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el libip4tc0 ppc64el 1.6.1-2ubuntu2 [23.6 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkmod2 ppc64el 24-1ubuntu3 [42.7 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el mount ppc64el 2.31.1-0.4ubuntu3 [107 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el libprocps6 ppc64el 2:3.3.12-3ubuntu1 [32.8 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el lsb-base all 9.20170808ubuntu1 [12.5 kB] Get:89 http://ftpmaster.internal/ubuntu bionic/main ppc64el procps ppc64el 2:3.3.12-3ubuntu1 [239 kB] Get:90 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd ppc64el 237-3ubuntu7 [3116 kB] Get:91 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libsystemd0 ppc64el 237-3ubuntu7 [222 kB] Get:92 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el mawk ppc64el 1.3.3-17ubuntu3 [86.2 kB] Get:93 http://ftpmaster.internal/ubuntu bionic/main ppc64el init ppc64el 1.51 [5868 B] Get:94 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el systemd-sysv ppc64el 237-3ubuntu7 [11.7 kB] Get:95 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpam-runtime all 1.1.8-3.6ubuntu1 [36.9 kB] Get:96 http://ftpmaster.internal/ubuntu bionic/main ppc64el libss2 ppc64el 1.44.1-1 [11.4 kB] Get:97 http://ftpmaster.internal/ubuntu bionic/main ppc64el sensible-utils all 0.0.12 [14.8 kB] Get:98 http://ftpmaster.internal/ubuntu bionic/main ppc64el dmsetup ppc64el 2:1.02.145-4.1ubuntu2 [77.9 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main ppc64el readline-common all 7.0-3 [52.9 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main ppc64el libreadline7 ppc64el 7.0-3 [126 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/main ppc64el libslang2 ppc64el 2.3.1a-3ubuntu1 [384 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsqlite3-0 ppc64el 3.22.0-1 [468 kB] Get:103 http://ftpmaster.internal/ubuntu bionic/main ppc64el libssl1.1 ppc64el 1.1.0g-2ubuntu3 [913 kB] Get:104 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el multiarch-support ppc64el 2.27-0ubuntu3 [6920 B] Get:105 http://ftpmaster.internal/ubuntu bionic/main ppc64el openssl ppc64el 1.1.0g-2ubuntu3 [531 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/main ppc64el tzdata all 2018d-1 [188 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgssapi-krb5-2 ppc64el 1.16-2build1 [123 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkrb5-3 ppc64el 1.16-2build1 [309 kB] Get:109 http://ftpmaster.internal/ubuntu bionic/main ppc64el libk5crypto3 ppc64el 1.16-2build1 [106 kB] Get:110 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkrb5support0 ppc64el 1.16-2build1 [32.3 kB] Get:111 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkeyutils1 ppc64el 1.5.9-9.2ubuntu1 [9736 B] Get:112 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpng16-16 ppc64el 1.6.34-1 [200 kB] Get:113 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpsl5 ppc64el 0.19.1-5build1 [43.6 kB] Get:114 http://ftpmaster.internal/ubuntu bionic/main ppc64el libssl1.0.0 ppc64el 1.0.2n-1ubuntu5 [890 kB] Get:115 http://ftpmaster.internal/ubuntu bionic/main ppc64el advancecomp ppc64el 2.1-1 [268 kB] Get:116 http://ftpmaster.internal/ubuntu bionic/universe ppc64el apt-transport-https all 1.6~beta1 [1692 B] Get:117 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libbinutils ppc64el 2.30-13ubuntu1 [469 kB] Get:118 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils ppc64el 2.30-13ubuntu1 [3384 B] Get:119 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-common ppc64el 2.30-13ubuntu1 [193 kB] Get:120 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el binutils-powerpc64le-linux-gnu ppc64el 2.30-13ubuntu1 [2002 kB] Get:121 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgomp1 ppc64el 8-20180402-1ubuntu1 [70.0 kB] Get:122 http://ftpmaster.internal/ubuntu bionic/main ppc64el libitm1 ppc64el 8-20180402-1ubuntu1 [29.3 kB] Get:123 http://ftpmaster.internal/ubuntu bionic/main ppc64el libatomic1 ppc64el 8-20180402-1ubuntu1 [8420 B] Get:124 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasan4 ppc64el 7.3.0-14ubuntu1 [367 kB] Get:125 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblsan0 ppc64el 8-20180402-1ubuntu1 [140 kB] Get:126 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtsan0 ppc64el 8-20180402-1ubuntu1 [290 kB] Get:127 http://ftpmaster.internal/ubuntu bionic/main ppc64el libubsan0 ppc64el 7.3.0-14ubuntu1 [136 kB] Get:128 http://ftpmaster.internal/ubuntu bionic/main ppc64el g++-7 ppc64el 7.3.0-14ubuntu1 [7119 kB] Get:129 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7 ppc64el 7.3.0-14ubuntu1 [6926 kB] Get:130 http://ftpmaster.internal/ubuntu bionic/main ppc64el libstdc++-7-dev ppc64el 7.3.0-14ubuntu1 [1509 kB] Get:131 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgcc-7-dev ppc64el 7.3.0-14ubuntu1 [981 kB] Get:132 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcc1-0 ppc64el 8-20180402-1ubuntu1 [39.1 kB] Get:133 http://ftpmaster.internal/ubuntu bionic/main ppc64el cpp-7 ppc64el 7.3.0-14ubuntu1 [6272 kB] Get:134 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc-7-base ppc64el 7.3.0-14ubuntu1 [18.7 kB] Get:135 http://ftpmaster.internal/ubuntu bionic/main ppc64el libisl19 ppc64el 0.19-1 [588 kB] Get:136 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmpc3 ppc64el 1.1.0-1 [40.5 kB] Get:137 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmpfr6 ppc64el 4.0.1-1 [230 kB] Get:138 http://ftpmaster.internal/ubuntu bionic/main ppc64el cpp ppc64el 4:7.3.0-2ubuntu1 [27.6 kB] Get:139 http://ftpmaster.internal/ubuntu bionic/main ppc64el gcc ppc64el 4:7.3.0-2ubuntu1 [5208 B] Get:140 http://ftpmaster.internal/ubuntu bionic/main ppc64el g++ ppc64el 4:7.3.0-2ubuntu1 [1564 B] Get:141 http://ftpmaster.internal/ubuntu bionic/main ppc64el dpkg-dev all 1.19.0.5ubuntu1 [607 kB] Get:142 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdpkg-perl all 1.19.0.5ubuntu1 [211 kB] Get:143 http://ftpmaster.internal/ubuntu bionic/main ppc64el patch ppc64el 2.7.6-1 [102 kB] Get:144 http://ftpmaster.internal/ubuntu bionic/main ppc64el build-essential ppc64el 12.4ubuntu1 [4754 B] Get:145 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-l10n all 2.2.4-1ubuntu1 [48.6 kB] Get:146 http://ftpmaster.internal/ubuntu bionic/main ppc64el libassuan0 ppc64el 2.5.1-2 [33.9 kB] Get:147 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg ppc64el 2.2.4-1ubuntu1 [249 kB] Get:148 http://ftpmaster.internal/ubuntu bionic/universe ppc64el gnupg-agent all 2.2.4-1ubuntu1 [4544 B] Get:149 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgconf ppc64el 2.2.4-1ubuntu1 [143 kB] Get:150 http://ftpmaster.internal/ubuntu bionic/main ppc64el pinentry-curses ppc64el 1.1.0-1 [38.7 kB] Get:151 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnpth0 ppc64el 1.5-3 [7780 B] Get:152 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpg-agent ppc64el 2.2.4-1ubuntu1 [261 kB] Get:153 http://ftpmaster.internal/ubuntu bionic/main ppc64el gnupg-utils ppc64el 2.2.4-1ubuntu1 [146 kB] Get:154 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpg ppc64el 2.2.4-1ubuntu1 [526 kB] Get:155 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpg-wks-client ppc64el 2.2.4-1ubuntu1 [112 kB] Get:156 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpg-wks-server ppc64el 2.2.4-1ubuntu1 [104 kB] Get:157 http://ftpmaster.internal/ubuntu bionic/main ppc64el gpgsm ppc64el 2.2.4-1ubuntu1 [246 kB] Get:158 http://ftpmaster.internal/ubuntu bionic/main ppc64el dirmngr ppc64el 2.2.4-1ubuntu1 [364 kB] Get:159 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfakeroot ppc64el 1.22-2ubuntu1 [23.7 kB] Get:160 http://ftpmaster.internal/ubuntu bionic/main ppc64el fakeroot ppc64el 1.22-2ubuntu1 [65.2 kB] Get:161 http://ftpmaster.internal/ubuntu bionic/main ppc64el libroken18-heimdal ppc64el 7.5.0+dfsg-1 [42.2 kB] Get:162 http://ftpmaster.internal/ubuntu bionic/main ppc64el libasn1-8-heimdal ppc64el 7.5.0+dfsg-1 [140 kB] Get:163 http://ftpmaster.internal/ubuntu bionic/main ppc64el libnghttp2-14 ppc64el 1.30.0-1 [84.5 kB] Get:164 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcurl3-gnutls ppc64el 7.58.0-2ubuntu3 [217 kB] Get:165 http://ftpmaster.internal/ubuntu bionic/main ppc64el libheimbase1-heimdal ppc64el 7.5.0+dfsg-1 [30.5 kB] Get:166 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhcrypto4-heimdal ppc64el 7.5.0+dfsg-1 [100 kB] Get:167 http://ftpmaster.internal/ubuntu bionic/main ppc64el libwind0-heimdal ppc64el 7.5.0+dfsg-1 [48.0 kB] Get:168 http://ftpmaster.internal/ubuntu bionic/main ppc64el libhx509-5-heimdal ppc64el 7.5.0+dfsg-1 [108 kB] Get:169 http://ftpmaster.internal/ubuntu bionic/main ppc64el libkrb5-26-heimdal ppc64el 7.5.0+dfsg-1 [216 kB] Get:170 http://ftpmaster.internal/ubuntu bionic/main ppc64el libheimntlm0-heimdal ppc64el 7.5.0+dfsg-1 [16.4 kB] Get:171 http://ftpmaster.internal/ubuntu bionic/main ppc64el libgssapi3-heimdal ppc64el 7.5.0+dfsg-1 [92.6 kB] Get:172 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libisl15 ppc64el 0.18-4 [578 kB] Get:173 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblockfile-bin ppc64el 1.14-1.1 [12.0 kB] Get:174 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblockfile1 ppc64el 1.14-1.1 [6988 B] Get:175 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsasl2-modules-db ppc64el 2.1.27~101-g0780600+dfsg-3ubuntu2 [15.0 kB] Get:176 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsasl2-2 ppc64el 2.1.27~101-g0780600+dfsg-3ubuntu2 [53.8 kB] Get:177 http://ftpmaster.internal/ubuntu bionic/main ppc64el optipng ppc64el 0.7.6-1.1 [86.8 kB] Get:178 http://ftpmaster.internal/ubuntu bionic/main ppc64el pkgbinarymangler all 135 [51.3 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 70.6 MB in 1s (44.4 MB/s) (Reading database ... 12537 files and directories currently installed.) 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Setting up libfakeroot:ppc64el (1.22-2ubuntu1) ... Setting up openssl (1.1.0g-2ubuntu3) ... Installing new version of config file /etc/ssl/openssl.cnf ... Setting up libsqlite3-0:ppc64el (3.22.0-1) ... Setting up dmsetup (2:1.02.145-4.1ubuntu2) ... Setting up libmpc3:ppc64el (1.1.0-1) ... Setting up libc-dev-bin (2.27-0ubuntu3) ... Setting up libcomerr2:ppc64el (1.44.1-1) ... Setting up libgdbm-compat4:ppc64el (1.14.1-6) ... Setting up libkeyutils1:ppc64el (1.5.9-9.2ubuntu1) ... Setting up libc6-dev:ppc64el (2.27-0ubuntu3) ... Setting up libslang2:ppc64el (2.3.1a-3ubuntu1) ... Setting up libassuan0:ppc64el (2.5.1-2) ... Setting up libitm1:ppc64el (8-20180402-1ubuntu1) ... Setting up libisl19:ppc64el (0.19-1) ... Setting up libk5crypto3:ppc64el (1.16-2build1) ... Setting up pkgbinarymangler (135) ... Setting up libwind0-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up libasan4:ppc64el (7.3.0-14ubuntu1) ... Setting up libbinutils:ppc64el (2.30-13ubuntu1) ... Setting up init (1.51) ... Setting up libasn1-8-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up libubsan0:ppc64el (7.3.0-14ubuntu1) ... Setting up gpgconf (2.2.4-1ubuntu1) ... Setting up binutils-powerpc64le-linux-gnu (2.30-13ubuntu1) ... Setting up libhcrypto4-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up fakeroot (1.22-2ubuntu1) ... Setting up libhx509-5-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up libgcc-7-dev:ppc64el (7.3.0-14ubuntu1) ... Setting up cpp-7 (7.3.0-14ubuntu1) ... Setting up libstdc++-7-dev:ppc64el (7.3.0-14ubuntu1) ... Setting up libperl5.26:ppc64el (5.26.1-5) ... Setting up gpgsm (2.2.4-1ubuntu1) ... Setting up gnupg-utils (2.2.4-1ubuntu1) ... Setting up pinentry-curses (1.1.0-1) ... Setting up libkrb5-3:ppc64el (1.16-2build1) ... Setting up binutils (2.30-13ubuntu1) ... Setting up libkrb5-26-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up dirmngr (2.2.4-1ubuntu1) ... Setting up libheimntlm0-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up gpg (2.2.4-1ubuntu1) ... Setting up cpp (4:7.3.0-2ubuntu1) ... Setting up gcc-7 (7.3.0-14ubuntu1) ... Setting up g++-7 (7.3.0-14ubuntu1) ... Setting up gpg-agent (2.2.4-1ubuntu1) ... Installing new version of config file /etc/X11/Xsession.d/90gpg-agent ... Setting up gcc (4:7.3.0-2ubuntu1) ... Setting up gpg-wks-server (2.2.4-1ubuntu1) ... Setting up gpg-wks-client (2.2.4-1ubuntu1) ... Setting up libgssapi-krb5-2:ppc64el (1.16-2build1) ... Setting up perl (5.26.1-5) ... Setting up g++ (4:7.3.0-2ubuntu1) ... Setting up gnupg-agent (2.2.4-1ubuntu1) ... Setting up libgssapi3-heimdal:ppc64el (7.5.0+dfsg-1) ... Setting up libcurl3-gnutls:ppc64el (7.58.0-2ubuntu3) ... Setting up gnupg (2.2.4-1ubuntu1) ... Setting up libdpkg-perl (1.19.0.5ubuntu1) ... Setting up dpkg-dev (1.19.0.5ubuntu1) ... Setting up build-essential (12.4ubuntu1) ... Processing triggers for libc-bin (2.27-0ubuntu3) ... RUN: /usr/share/launchpad-buildd/slavebin/sbuild-package PACKAGEBUILD-14534865 ppc64el bionic-proposed -c chroot:build-PACKAGEBUILD-14534865 --arch=ppc64el --dist=bionic-proposed --nolog iva_1.0.9+ds-4ubuntu1.dsc Initiating build PACKAGEBUILD-14534865 with 4 jobs across 4 processor cores. Kernel reported to sbuild: 4.4.0-119-generic #143-Ubuntu SMP Mon Apr 2 16:08:02 UTC 2018 ppc64le sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on bos02-ppc64el-009.buildd +==============================================================================+ | iva 1.0.9+ds-4ubuntu1 (ppc64el) 05 Apr 2018 10:35 | +==============================================================================+ Package: iva Version: 1.0.9+ds-4ubuntu1 Source Version: 1.0.9+ds-4ubuntu1 Distribution: bionic-proposed Machine Architecture: ppc64el Host Architecture: ppc64el Build Architecture: ppc64el I: NOTICE: Log filtering will replace 'build/iva-5062M9/iva-1.0.9+ds' with '<>' I: NOTICE: Log filtering will replace 'build/iva-5062M9' with '<>' I: NOTICE: Log filtering will replace 'home/buildd/build-PACKAGEBUILD-14534865/chroot-autobuild' with '<>' +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Local sources ------------- iva_1.0.9+ds-4ubuntu1.dsc exists in .; copying to chroot Check architectures ------------------- Check dependencies ------------------ Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-JlJqwQ/apt_archive/sbuild-build-depends-core-dummy.deb'. Ign:1 copy:/<>/resolver-JlJqwQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-JlJqwQ/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-JlJqwQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-JlJqwQ/apt_archive ./ Sources [214 B] Get:5 copy:/<>/resolver-JlJqwQ/apt_archive ./ Packages [527 B] Fetched 2860 B in 0s (133 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install core build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libcurl3-gnutls libgdbm3 libgssapi-krb5-2 libisl15 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libmpfr4 libnghttp2-14 libpsl5 librtmp1 libssl1.0.0 libunistring0 Use 'apt autoremove' to remove them. The following NEW packages will be installed: sbuild-build-depends-core-dummy 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 856 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-JlJqwQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [856 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 856 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... 12881 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... Merged Build-Depends: debhelper (>= 11~), dh-python, libssl-dev, bioperl, fastaq (>= 1.6), kmc, help2man, mummer, python3, python3-setuptools, python3-numpy, python3-nose, python3-networkx, python3-pysam, samtools, smalt, default-jdk-headless Filtered Build-Depends: debhelper (>= 11~), dh-python, libssl-dev, bioperl, fastaq (>= 1.6), kmc, help2man, mummer, python3, python3-setuptools, python3-numpy, python3-nose, python3-networkx, python3-pysam, samtools, smalt, default-jdk-headless dpkg-deb: building package 'sbuild-build-depends-iva-dummy' in '/<>/resolver-YULwhS/apt_archive/sbuild-build-depends-iva-dummy.deb'. Ign:1 copy:/<>/resolver-YULwhS/apt_archive ./ InRelease Get:2 copy:/<>/resolver-YULwhS/apt_archive ./ Release [2119 B] Ign:3 copy:/<>/resolver-YULwhS/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-YULwhS/apt_archive ./ Sources [310 B] Get:5 copy:/<>/resolver-YULwhS/apt_archive ./ Packages [634 B] Fetched 3063 B in 0s (124 kB/s) Reading package lists... Reading package lists... +------------------------------------------------------------------------------+ | Install iva build dependencies (apt-based resolver) | +------------------------------------------------------------------------------+ Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following packages were automatically installed and are no longer required: gnupg-agent libcryptsetup4 libgdbm3 libisl15 libmpfr4 libssl1.0.0 libunistring0 Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdmainutils ca-certificates-java debhelper default-jdk-headless default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism fastaq file gawk gettext gettext-base groff-base help2man intltool-debian java-common kmc libalgorithm-diff-perl libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbambamc0 libbio-perl-perl libblas3 libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl libcroco3 libcups2 libdata-stag-perl libdbus-1-3 libdevel-stacktrace-perl libexception-class-perl libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libhts2 libicu60 libio-string-perl libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libpcsclite1 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libssl-dev libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db mime-support mummer openjdk-9-jdk-headless openjdk-9-jre-headless po-debconf python3 python3-decorator python3-distutils python3-lib2to3 python3-minimal python3-networkx python3-nose python3-numpy python3-pkg-resources python3-pysam python3-setuptools python3.6 python3.6-minimal samtools smalt x11-common Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make dwz default-jre gawk-doc gettext-doc libasprintf-dev libgettextpo-dev groff libxml-sax-expatxs-perl cups-common liblcms2-utils pcscd libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser openjdk-9-demo openjdk-9-source libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho fonts-wqy-microhei | fonts-wqy-zenhei fonts-indic libmail-box-perl python3-doc python3-tk python3-venv python3-scipy python-nose-doc gfortran python-numpy-doc python3-dev python3-numpy-dbg python-setuptools-doc python3.6-venv python3.6-doc binfmt-support Recommended packages: bioperl-run perl-doc libhttp-message-perl libwww-perl libcache-cache-perl libbio-perl-run-perl libdbi-perl libgd-gd2-perl libapache-dbi-perl liburi-perl libxml-simple-perl libyaml-perl libace-perl liblist-moreutils-perl libxml-twig-perl libset-scalar-perl curl | wget | lynx libalgorithm-diff-xs-perl bioperl-run | libbio-perl-run-perl libalgorithm-munkres-perl libarray-compare-perl libbio-asn1-entrezgene-perl libclone-perl libconvert-binary-c-perl libdbd-sqlite3-perl libdbd-mysql-perl libdbd-pg-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-parser-perl libhtml-tableextract-perl libpostscript-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-perl libsvg-graph-perl libxml-dom-xpath-perl libxml-parser-perl libxml-sax-perl libxml-sax-writer-perl libxml-writer-perl libxml-libxml-perl perl-tk libgd-gd2-perl | libgd-gd2-noxpm-perl libxml-libxslt-perl libmldbm-perl libxml-perl dbus libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libssl-doc libltdl-dev libmail-sendmail-perl python3-yaml python cwltool The following packages will be REMOVED: pkg-create-dbgsym* The following NEW packages will be installed: autoconf automake autopoint autotools-dev bioperl bsdmainutils ca-certificates-java debhelper default-jdk-headless default-jre-headless dh-autoreconf dh-python dh-strip-nondeterminism fastaq file gawk gettext gettext-base groff-base help2man intltool-debian java-common kmc libalgorithm-diff-perl libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3 libbambamc0 libbio-perl-perl libblas3 libbsd0 libcapture-tiny-perl libclass-data-inheritable-perl libcroco3 libcups2 libdata-stag-perl libdbus-1-3 libdevel-stacktrace-perl libexception-class-perl libexpat1 libfile-stripnondeterminism-perl libfreetype6 libgfortran4 libglib2.0-0 libhts2 libicu60 libio-string-perl libjpeg-turbo8 libjpeg8 liblapack3 liblcms2-2 liblocale-gettext-perl libmagic-mgc libmagic1 libmpdec2 libnspr4 libnss3 libpcsclite1 libpipeline1 libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libsigsegv2 libssl-dev libsub-uplevel-perl libtest-deep-perl libtest-differences-perl libtest-exception-perl libtest-most-perl libtest-warn-perl libtext-diff-perl libtimedate-perl libtool libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxrender1 libxtst6 m4 man-db mime-support mummer openjdk-9-jdk-headless openjdk-9-jre-headless po-debconf python3 python3-decorator python3-distutils python3-lib2to3 python3-minimal python3-networkx python3-nose python3-numpy python3-pkg-resources python3-pysam python3-setuptools python3.6 python3.6-minimal samtools sbuild-build-depends-iva-dummy smalt x11-common 0 upgraded, 108 newly installed, 1 to remove and 0 not upgraded. Need to get 150 MB of archives. After this operation, 439 MB of additional disk space will be used. Get:1 copy:/<>/resolver-YULwhS/apt_archive ./ sbuild-build-depends-iva-dummy 0.invalid.0 [964 B] Get:2 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblocale-gettext-perl ppc64el 1.07-3build2 [16.5 kB] Get:3 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython3.6-minimal ppc64el 3.6.5-3 [532 kB] Get:4 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexpat1 ppc64el 2.2.5-3 [89.5 kB] Get:5 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3.6-minimal ppc64el 3.6.5-3 [1537 kB] Get:6 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3-minimal ppc64el 3.6.5-2 [23.9 kB] Get:7 http://ftpmaster.internal/ubuntu bionic/main ppc64el mime-support all 3.60ubuntu1 [30.1 kB] Get:8 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmpdec2 ppc64el 2.4.2-1 [82.6 kB] Get:9 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpython3.6-stdlib ppc64el 3.6.5-3 [1668 kB] Get:10 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3.6 ppc64el 3.6.5-3 [186 kB] Get:11 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el libpython3-stdlib ppc64el 3.6.5-2 [7372 B] Get:12 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3 ppc64el 3.6.5-2 [8776 B] Get:13 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxau6 ppc64el 1:1.0.8-1 [7460 B] Get:14 http://ftpmaster.internal/ubuntu bionic/main ppc64el libbsd0 ppc64el 0.8.7-1 [49.8 kB] Get:15 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [11.0 kB] Get:16 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxcb1 ppc64el 1.13-1 [44.5 kB] Get:17 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-data all 2:1.6.4-3 [114 kB] Get:18 http://ftpmaster.internal/ubuntu bionic/main ppc64el libx11-6 ppc64el 2:1.6.4-3 [566 kB] Get:19 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxext6 ppc64el 2:1.3.3-1 [30.7 kB] Get:20 http://ftpmaster.internal/ubuntu bionic/main ppc64el bsdmainutils ppc64el 11.1.2ubuntu1 [185 kB] Get:21 http://ftpmaster.internal/ubuntu bionic/main ppc64el groff-base ppc64el 1.22.3-10 [1468 kB] Get:22 http://ftpmaster.internal/ubuntu bionic/main ppc64el libpipeline1 ppc64el 1.5.0-1 [24.7 kB] Get:23 http://ftpmaster.internal/ubuntu bionic/main ppc64el man-db ppc64el 2.8.2-1 [1033 kB] Get:24 http://ftpmaster.internal/ubuntu bionic/main ppc64el libsigsegv2 ppc64el 2.12-1 [14.7 kB] Get:25 http://ftpmaster.internal/ubuntu bionic/main ppc64el gawk ppc64el 1:4.1.4+dfsg-1build1 [418 kB] Get:26 http://ftpmaster.internal/ubuntu bionic/main ppc64el libjpeg-turbo8 ppc64el 1.5.2-0ubuntu5 [146 kB] Get:27 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3-lib2to3 all 3.6.5-3 [76.6 kB] Get:28 http://ftpmaster.internal/ubuntu bionic-proposed/main ppc64el python3-distutils all 3.6.5-3 [141 kB] Get:29 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-python all 3.20180325ubuntu2 [89.2 kB] Get:30 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic-mgc ppc64el 1:5.32-2 [184 kB] Get:31 http://ftpmaster.internal/ubuntu bionic/main ppc64el libmagic1 ppc64el 1:5.32-2 [76.7 kB] Get:32 http://ftpmaster.internal/ubuntu bionic/main ppc64el file ppc64el 1:5.32-2 [22.7 kB] Get:33 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdbus-1-3 ppc64el 1.12.2-1ubuntu1 [183 kB] Get:34 http://ftpmaster.internal/ubuntu bionic/main ppc64el libglib2.0-0 ppc64el 2.56.0-4ubuntu1 [1158 kB] Get:35 http://ftpmaster.internal/ubuntu bionic/main ppc64el libicu60 ppc64el 60.2-3ubuntu3 [8351 kB] Get:36 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxml2 ppc64el 2.9.4+dfsg1-6.1ubuntu1 [615 kB] Get:37 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext-base ppc64el 0.19.8.1-6 [50.2 kB] Get:38 http://ftpmaster.internal/ubuntu bionic/main ppc64el m4 ppc64el 1.4.18-1 [202 kB] Get:39 http://ftpmaster.internal/ubuntu bionic/main ppc64el autoconf all 2.69-11 [322 kB] Get:40 http://ftpmaster.internal/ubuntu bionic/main ppc64el autotools-dev all 20180224.1 [39.6 kB] Get:41 http://ftpmaster.internal/ubuntu bionic/main ppc64el automake all 1:1.15.1-3ubuntu2 [509 kB] Get:42 http://ftpmaster.internal/ubuntu bionic/main ppc64el autopoint all 0.19.8.1-6 [412 kB] Get:43 http://ftpmaster.internal/ubuntu bionic/main ppc64el libio-string-perl all 1.08-3 [11.1 kB] Get:44 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libdata-stag-perl all 0.14-2 [369 kB] Get:45 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libbio-perl-perl all 1.7.2-2 [4526 kB] Get:46 http://ftpmaster.internal/ubuntu bionic/main ppc64el libclass-data-inheritable-perl all 0.08-2 [8774 B] Get:47 http://ftpmaster.internal/ubuntu bionic/main ppc64el libdevel-stacktrace-perl all 2.0300-1 [22.4 kB] Get:48 http://ftpmaster.internal/ubuntu bionic/main ppc64el libexception-class-perl all 1.44-1 [25.9 kB] Get:49 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtest-deep-perl all 1.127-1 [41.2 kB] Get:50 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libcapture-tiny-perl all 0.46-1 [20.3 kB] Get:51 http://ftpmaster.internal/ubuntu bionic/main ppc64el libalgorithm-diff-perl all 1.19.03-1 [47.6 kB] Get:52 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtext-diff-perl all 1.45-1 [25.7 kB] Get:53 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtest-differences-perl all 0.64-1 [16.2 kB] Get:54 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libsub-uplevel-perl all 0.2800-1 [13.5 kB] Get:55 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtest-exception-perl all 0.43-1 [14.7 kB] Get:56 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtest-warn-perl all 0.32-1 [13.6 kB] Get:57 http://ftpmaster.internal/ubuntu bionic/universe ppc64el libtest-most-perl all 0.35-1 [22.1 kB] Get:58 http://ftpmaster.internal/ubuntu bionic/universe ppc64el bioperl all 1.7.2-2 [382 kB] Get:59 http://ftpmaster.internal/ubuntu bionic/main ppc64el java-common all 0.62ubuntu2 [7040 B] Get:60 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libpcsclite1 ppc64el 1.8.23-1 [29.0 kB] Get:70 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxi6 ppc64el 2:1.7.9-1 [29.0 kB] Get:71 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [17.6 kB] Get:72 http://ftpmaster.internal/ubuntu bionic/main ppc64el x11-common all 1:7.7+19ubuntu5 [21.9 kB] Get:73 http://ftpmaster.internal/ubuntu bionic/main ppc64el libxtst6 ppc64el 2:1.2.3-1 [13.5 kB] Get:74 http://ftpmaster.internal/ubuntu bionic/main ppc64el openjdk-9-jre-headless ppc64el 9.0.4+12-4ubuntu2 [36.2 MB] Get:75 http://ftpmaster.internal/ubuntu bionic/main ppc64el default-jre-headless ppc64el 2:1.9-62ubuntu2 [3424 B] Get:76 http://ftpmaster.internal/ubuntu bionic/main ppc64el ca-certificates-java all 20170930 [12.0 kB] Get:77 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtool all 2.4.6-2 [194 kB] Get:78 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-autoreconf all 17 [15.8 kB] Get:79 http://ftpmaster.internal/ubuntu bionic/main ppc64el libarchive-zip-perl all 1.60-1 [83.9 kB] Get:80 http://ftpmaster.internal/ubuntu bionic/main ppc64el libfile-stripnondeterminism-perl all 0.040-1.1~build1 [13.8 kB] Get:81 http://ftpmaster.internal/ubuntu bionic/main ppc64el libtimedate-perl all 2.3000-2 [37.5 kB] Get:82 http://ftpmaster.internal/ubuntu bionic/main ppc64el dh-strip-nondeterminism all 0.040-1.1~build1 [5208 B] Get:83 http://ftpmaster.internal/ubuntu bionic/main ppc64el libcroco3 ppc64el 0.6.12-2 [82.5 kB] Get:84 http://ftpmaster.internal/ubuntu bionic/main ppc64el gettext ppc64el 0.19.8.1-6 [953 kB] Get:85 http://ftpmaster.internal/ubuntu bionic/main ppc64el intltool-debian all 0.35.0+20060710.4 [24.9 kB] Get:86 http://ftpmaster.internal/ubuntu bionic/main ppc64el po-debconf all 1.0.20 [232 kB] Get:87 http://ftpmaster.internal/ubuntu bionic/main ppc64el debhelper all 11.1.6ubuntu1 [902 kB] Get:88 http://ftpmaster.internal/ubuntu bionic/main ppc64el openjdk-9-jdk-headless ppc64el 9.0.4+12-4ubuntu2 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7.3.0-14ubuntu1 [292 kB] Get:99 http://ftpmaster.internal/ubuntu bionic/main ppc64el liblapack3 ppc64el 3.7.1-4ubuntu1 [1498 kB] Get:100 http://ftpmaster.internal/ubuntu bionic/main ppc64el libssl-dev ppc64el 1.1.0g-2ubuntu3 [1187 kB] Get:101 http://ftpmaster.internal/ubuntu bionic/universe ppc64el mummer ppc64el 3.23+dfsg-3 [845 kB] Get:102 http://ftpmaster.internal/ubuntu bionic/universe ppc64el python3-decorator all 4.1.2-1 [9364 B] Get:103 http://ftpmaster.internal/ubuntu bionic/universe ppc64el python3-networkx all 1.11-1ubuntu1 [608 kB] Get:104 http://ftpmaster.internal/ubuntu bionic/universe ppc64el python3-nose all 1.3.7-3 [115 kB] Get:105 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3-numpy ppc64el 1:1.13.3-2ubuntu1 [1935 kB] Get:106 http://ftpmaster.internal/ubuntu bionic/universe ppc64el python3-pysam ppc64el 0.14+ds-2 [1507 kB] Get:107 http://ftpmaster.internal/ubuntu bionic/main ppc64el python3-setuptools all 39.0.1-2 [248 kB] Get:108 http://ftpmaster.internal/ubuntu bionic/universe ppc64el smalt ppc64el 0.7.6-7 [133 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 150 MB in 5s (30.4 MB/s) (Reading database ... 12881 files and directories currently installed.) Removing pkg-create-dbgsym (0.73) ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12872 files and directories currently installed.) Preparing to unpack .../0-liblocale-gettext-perl_1.07-3build2_ppc64el.deb ... Unpacking liblocale-gettext-perl (1.07-3build2) ... Selecting previously unselected package libpython3.6-minimal:ppc64el. Preparing to unpack .../1-libpython3.6-minimal_3.6.5-3_ppc64el.deb ... Unpacking libpython3.6-minimal:ppc64el (3.6.5-3) ... Selecting previously unselected package libexpat1:ppc64el. Preparing to unpack .../2-libexpat1_2.2.5-3_ppc64el.deb ... Unpacking libexpat1:ppc64el (2.2.5-3) ... Selecting previously unselected package python3.6-minimal. Preparing to unpack .../3-python3.6-minimal_3.6.5-3_ppc64el.deb ... Unpacking python3.6-minimal (3.6.5-3) ... Selecting previously unselected package python3-minimal. Preparing to unpack .../4-python3-minimal_3.6.5-2_ppc64el.deb ... Unpacking python3-minimal (3.6.5-2) ... 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Unpacking python3-pkg-resources (39.0.1-2) ... Selecting previously unselected package libhts2:ppc64el. Preparing to unpack .../66-libhts2_1.7-2_ppc64el.deb ... Unpacking libhts2:ppc64el (1.7-2) ... Selecting previously unselected package samtools. Preparing to unpack .../67-samtools_1.7-1_ppc64el.deb ... Unpacking samtools (1.7-1) ... Selecting previously unselected package fastaq. Preparing to unpack .../68-fastaq_3.17.0-1_all.deb ... Unpacking fastaq (3.17.0-1) ... Selecting previously unselected package help2man. Preparing to unpack .../69-help2man_1.47.6_ppc64el.deb ... Unpacking help2man (1.47.6) ... Selecting previously unselected package kmc. Preparing to unpack .../70-kmc_2.3+dfsg-5_ppc64el.deb ... Unpacking kmc (2.3+dfsg-5) ... Selecting previously unselected package libbambamc0. Preparing to unpack .../71-libbambamc0_0.0.50-1_ppc64el.deb ... Unpacking libbambamc0 (0.0.50-1) ... Selecting previously unselected package libblas3:ppc64el. 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Selecting previously unselected package python3-networkx. Preparing to unpack .../78-python3-networkx_1.11-1ubuntu1_all.deb ... Unpacking python3-networkx (1.11-1ubuntu1) ... Selecting previously unselected package python3-nose. Preparing to unpack .../79-python3-nose_1.3.7-3_all.deb ... Unpacking python3-nose (1.3.7-3) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../80-python3-numpy_1%3a1.13.3-2ubuntu1_ppc64el.deb ... Unpacking python3-numpy (1:1.13.3-2ubuntu1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../81-python3-pysam_0.14+ds-2_ppc64el.deb ... Unpacking python3-pysam (0.14+ds-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../82-python3-setuptools_39.0.1-2_all.deb ... Unpacking python3-setuptools (39.0.1-2) ... Selecting previously unselected package smalt. Preparing to unpack .../83-smalt_0.7.6-7_ppc64el.deb ... Unpacking smalt (0.7.6-7) ... Selecting previously unselected package sbuild-build-depends-iva-dummy. Preparing to unpack .../84-sbuild-build-depends-iva-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-iva-dummy (0.invalid.0) ... Setting up libtest-deep-perl (1.127-1) ... Setting up libicu60:ppc64el (60.2-3ubuntu3) ... Setting up libclass-data-inheritable-perl (0.08-2) ... Setting up libarchive-zip-perl (1.60-1) ... Setting up mime-support (3.60ubuntu1) ... Setting up libgfortran4:ppc64el (7.3.0-14ubuntu1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up liblcms2-2:ppc64el (2.9-1) ... Setting up libpcsclite1:ppc64el (1.8.23-1) ... Setting up libdevel-stacktrace-perl (2.0300-1) ... Setting up libssl-dev:ppc64el (1.1.0g-2ubuntu3) ... Setting up groff-base (1.22.3-10) ... Setting up libglib2.0-0:ppc64el (2.56.0-4ubuntu1) ... No schema files found: doing nothing. Setting up libcapture-tiny-perl (0.46-1) ... Setting up java-common (0.62ubuntu2) ... Setting up gettext-base (0.19.8.1-6) ... Setting up libjpeg-turbo8:ppc64el (1.5.2-0ubuntu5) ... Setting up libpipeline1:ppc64el (1.5.0-1) ... Setting up kmc (2.3+dfsg-5) ... Setting up m4 (1.4.18-1) ... Setting up gawk (1:4.1.4+dfsg-1build1) ... Setting up libbsd0:ppc64el (0.8.7-1) ... Setting up libnspr4:ppc64el (2:4.18-1ubuntu1) ... Setting up libxml2:ppc64el (2.9.4+dfsg1-6.1ubuntu1) ... Setting up libfreetype6:ppc64el (2.8.1-2ubuntu1) ... Setting up libmagic-mgc (1:5.32-2) ... Setting up libmagic1:ppc64el (1:5.32-2) ... Setting up libcroco3:ppc64el (0.6.12-2) ... Setting up libblas3:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Processing triggers for libc-bin (2.27-0ubuntu3) ... Setting up autotools-dev (20180224.1) ... Processing triggers for systemd (237-3ubuntu7) ... Setting up libio-string-perl (1.08-3) ... Setting up libalgorithm-diff-perl (1.19.03-1) ... Setting up liblocale-gettext-perl (1.07-3build2) ... Setting up libbambamc0 (0.0.50-1) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up bsdmainutils (11.1.2ubuntu1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libsub-uplevel-perl (0.2800-1) ... Setting up x11-common (1:7.7+19ubuntu5) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults Running in chroot, ignoring request. invoke-rc.d: policy-rc.d denied execution of start. Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Setting up libhts2:ppc64el (1.7-2) ... Setting up libx11-data (2:1.6.4-3) ... Setting up libdata-stag-perl (0.14-2) ... Setting up libxau6:ppc64el (1:1.0.8-1) ... Setting up autopoint (0.19.8.1-6) ... Setting up libmpdec2:ppc64el (2.4.2-1) ... Setting up libdbus-1-3:ppc64el (1.12.2-1ubuntu1) ... Setting up libavahi-common-data:ppc64el (0.7-3.1ubuntu1) ... Setting up libtest-warn-perl (0.32-1) ... Setting up libfile-stripnondeterminism-perl (0.040-1.1~build1) ... Setting up libjpeg8:ppc64el (8c-2ubuntu8) ... Setting up libpython3.6-stdlib:ppc64el (3.6.5-3) ... Setting up python3.6 (3.6.5-3) ... Setting up libbio-perl-perl (1.7.2-2) ... Setting up libexception-class-perl (1.44-1) ... Setting up gettext (0.19.8.1-6) ... Setting up mummer (3.23+dfsg-3) ... Setting up liblapack3:ppc64el (3.7.1-4ubuntu1) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libtext-diff-perl (1.45-1) ... Setting up libtest-exception-perl (0.43-1) ... Setting up libnss3:ppc64el (2:3.35-2ubuntu2) ... Setting up autoconf (2.69-11) ... Setting up file (1:5.32-2) ... Setting up smalt (0.7.6-7) ... Setting up intltool-debian (0.35.0+20060710.4) ... Setting up automake (1:1.15.1-3ubuntu2) ... update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode Setting up help2man (1.47.6) ... Setting up man-db (2.8.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libavahi-common3:ppc64el (0.7-3.1ubuntu1) ... Setting up samtools (1.7-1) ... Setting up libxcb1:ppc64el (1.13-1) ... Setting up libtool (2.4.6-2) ... Setting up libpython3-stdlib:ppc64el (3.6.5-2) ... Setting up libtest-differences-perl (0.64-1) ... Setting up po-debconf (1.0.20) ... Setting up python3 (3.6.5-2) ... Setting up python3-numpy (1:1.13.3-2ubuntu1) ... Setting up libx11-6:ppc64el (2:1.6.4-3) ... Setting up python3-pkg-resources (39.0.1-2) ... Setting up fastaq (3.17.0-1) ... Setting up python3-pysam (0.14+ds-2) ... Setting up python3-nose (1.3.7-3) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libavahi-client3:ppc64el (0.7-3.1ubuntu1) ... Setting up python3-lib2to3 (3.6.5-3) ... Setting up python3-decorator (4.1.2-1) ... Setting up python3-distutils (3.6.5-3) ... Setting up libcups2:ppc64el (2.2.7-1ubuntu1) ... Setting up libtest-most-perl (0.35-1) ... Setting up libxext6:ppc64el (2:1.3.3-1) ... Setting up libxtst6:ppc64el (2:1.2.3-1) ... Setting up python3-networkx (1.11-1ubuntu1) ... Setting up bioperl (1.7.2-2) ... Setting up python3-setuptools (39.0.1-2) ... Setting up dh-python (3.20180325ubuntu2) ... Setting up libxi6:ppc64el (2:1.7.9-1) ... Setting up dh-strip-nondeterminism (0.040-1.1~build1) ... Setting up default-jre-headless (2:1.9-62ubuntu2) ... Setting up openjdk-9-jre-headless:ppc64el (9.0.4+12-4ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up debhelper (11.1.6ubuntu1) ... Setting up ca-certificates-java (20170930) ... Adding debian:EC-ACC.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:Certplus_Root_CA_G1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:AddTrust_Public_Services_Root.pem Adding debian:ISRG_Root_X1.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Visa_eCommerce_Root.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:TÜRKTRUST_Elektronik_Sertifika_Hizmet_Sağlayıcısı_H5.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Certigna.pem Adding debian:ACEDICOM_Root.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:DST_ACES_CA_X6.pem Adding debian:Comodo_Secure_Services_root.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:AddTrust_Low-Value_Services_Root.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Swisscom_Root_CA_2.pem Adding debian:Comodo_Trusted_Services_root.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:AddTrust_Qualified_Certificates_Root.pem Adding debian:OpenTrust_Root_CA_G1.pem Adding debian:OpenTrust_Root_CA_G3.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Certum_Root_CA.pem Adding debian:Taiwan_GRCA.pem Adding debian:Certplus_Class_2_Primary_CA.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Izenpe.com.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:OpenTrust_Root_CA_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_EV_RootCA1.pem Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GeoTrust_Global_CA_2.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Camerfirma_Global_Chambersign_Root.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem Adding debian:AddTrust_External_Root.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:ACCVRAIZ1.pem Adding debian:SecureTrust_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Certinomis_-_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:CNNIC_ROOT.pem Adding debian:AffirmTrust_Premium.pem Adding debian:TÜBİTAK_UEKAE_Kök_Sertifika_Hizmet_Sağlayıcısı_-_Sürüm_3.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Deutsche_Telekom_Root_CA_2.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:Swisscom_Root_EV_CA_2.pem Adding debian:Swisscom_Root_CA_1.pem Adding debian:Certinomis_-_Autorité_Racine.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:CA_Disig_Root_R1.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Certplus_Root_CA_G2.pem Adding debian:DST_Root_CA_X3.pem Adding debian:UTN_USERFirst_Hardware_Root_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:Secure_Global_CA.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:PSCProcert.pem Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:AffirmTrust_Networking.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem done. Setting up dh-autoreconf (17) ... Setting up openjdk-9-jdk-headless:ppc64el (9.0.4+12-4ubuntu2) ... update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/idlj to provide /usr/bin/idlj (idlj) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/wsimport to provide /usr/bin/wsimport (wsimport) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javah to provide /usr/bin/javah (javah) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/policytool to provide /usr/bin/policytool (policytool) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/schemagen to provide /usr/bin/schemagen (schemagen) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/xjc to provide /usr/bin/xjc (xjc) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/wsgen to provide /usr/bin/wsgen (wsgen) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-9-openjdk-ppc64el/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode Setting up default-jdk-headless (2:1.9-62ubuntu2) ... Setting up sbuild-build-depends-iva-dummy (0.invalid.0) ... (Reading database ... 20618 files and directories currently installed.) Purging configuration files for pkg-create-dbgsym (0.73) ... Processing triggers for libc-bin (2.27-0ubuntu3) ... Processing triggers for systemd (237-3ubuntu7) ... Processing triggers for ca-certificates (20170717) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.4.0-119-generic ppc64el (ppc64le) Toolchain package versions: binutils_2.30-13ubuntu1 dpkg-dev_1.19.0.5ubuntu1 g++-7_7.3.0-14ubuntu1 gcc-7_7.3.0-14ubuntu1 libc6-dev_2.27-0ubuntu3 libstdc++-7-dev_7.3.0-14ubuntu1 libstdc++6_8-20180402-1ubuntu1 linux-libc-dev_4.15.0-15.16 Package versions: adduser_3.116ubuntu1 advancecomp_2.1-1 apt_1.6~beta1 apt-transport-https_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3ubuntu2 autopoint_0.19.8.1-6 autotools-dev_20180224.1 base-files_10ubuntu1 base-passwd_3.5.44 bash_4.4.18-2ubuntu1 binutils_2.30-13ubuntu1 binutils-common_2.30-13ubuntu1 binutils-powerpc64le-linux-gnu_2.30-13ubuntu1 bioperl_1.7.2-2 bsdmainutils_11.1.2ubuntu1 bsdutils_1:2.31.1-0.4ubuntu3 build-essential_12.4ubuntu1 bzip2_1.0.6-8.1 ca-certificates_20170717 ca-certificates-java_20170930 coreutils_8.28-1ubuntu1 cpp_4:7.3.0-2ubuntu1 cpp-7_7.3.0-14ubuntu1 dash_0.5.8-2.10 debconf_1.5.66 debhelper_11.1.6ubuntu1 debianutils_4.8.4 default-jdk-headless_2:1.9-62ubuntu2 default-jre-headless_2:1.9-62ubuntu2 dh-autoreconf_17 dh-python_3.20180325ubuntu2 dh-strip-nondeterminism_0.040-1.1~build1 diffutils_1:3.6-1 dirmngr_2.2.4-1ubuntu1 dmsetup_2:1.02.145-4.1ubuntu2 dpkg_1.19.0.5ubuntu1 dpkg-dev_1.19.0.5ubuntu1 e2fslibs_1.44.1-1 e2fsprogs_1.44.1-1 fakeroot_1.22-2ubuntu1 fastaq_3.17.0-1 fdisk_2.31.1-0.4ubuntu3 file_1:5.32-2 findutils_4.6.0+git+20170828-2 g++_4:7.3.0-2ubuntu1 g++-7_7.3.0-14ubuntu1 gawk_1:4.1.4+dfsg-1build1 gcc_4:7.3.0-2ubuntu1 gcc-7_7.3.0-14ubuntu1 gcc-7-base_7.3.0-14ubuntu1 gcc-8-base_8-20180402-1ubuntu1 gettext_0.19.8.1-6 gettext-base_0.19.8.1-6 gnupg_2.2.4-1ubuntu1 gnupg-agent_2.2.4-1ubuntu1 gnupg-l10n_2.2.4-1ubuntu1 gnupg-utils_2.2.4-1ubuntu1 gpg_2.2.4-1ubuntu1 gpg-agent_2.2.4-1ubuntu1 gpg-wks-client_2.2.4-1ubuntu1 gpg-wks-server_2.2.4-1ubuntu1 gpgconf_2.2.4-1ubuntu1 gpgsm_2.2.4-1ubuntu1 gpgv_2.2.4-1ubuntu1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5ubuntu1 help2man_1.47.6 hostname_3.20 init_1.51 init-system-helpers_1.51 initscripts_2.88dsf-59.3ubuntu2 insserv_1.14.0-5ubuntu3 intltool-debian_0.35.0+20060710.4 java-common_0.62ubuntu2 kmc_2.3+dfsg-5 libacl1_2.2.52-3build1 libalgorithm-diff-perl_1.19.03-1 libapparmor1_2.12-4ubuntu4 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-14ubuntu1 libasn1-8-heimdal_7.5.0+dfsg-1 libassuan0_2.5.1-2 libatomic1_8-20180402-1ubuntu1 libattr1_1:2.4.47-2build1 libaudit-common_1:2.8.2-1ubuntu1 libaudit1_1:2.8.2-1ubuntu1 libavahi-client3_0.7-3.1ubuntu1 libavahi-common-data_0.7-3.1ubuntu1 libavahi-common3_0.7-3.1ubuntu1 libbambamc0_0.0.50-1 libbinutils_2.30-13ubuntu1 libbio-perl-perl_1.7.2-2 libblas3_3.7.1-4ubuntu1 libblkid1_2.31.1-0.4ubuntu3 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-0ubuntu3 libc-dev-bin_2.27-0ubuntu3 libc6_2.27-0ubuntu3 libc6-dev_2.27-0ubuntu3 libcap-ng0_0.7.7-3.1 libcap2_1:2.25-1.2 libcapture-tiny-perl_0.46-1 libcc1-0_8-20180402-1ubuntu1 libclass-data-inheritable-perl_0.08-2 libcom-err2_1.44.1-1 libcomerr2_1.44.1-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.1-0ubuntu2 libcryptsetup4_2:1.7.3-4ubuntu1 libcups2_2.2.7-1ubuntu1 libcurl3-gnutls_7.58.0-2ubuntu3 libdata-stag-perl_0.14-2 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.2-1ubuntu1 libdebconfclient0_0.213ubuntu1 libdevel-stacktrace-perl_2.0300-1 libdevmapper1.02.1_2:1.02.145-4.1ubuntu2 libdpkg-perl_1.19.0.5ubuntu1 libexception-class-perl_1.44-1 libexpat1_2.2.5-3 libext2fs2_1.44.1-1 libfakeroot_1.22-2ubuntu1 libfdisk1_2.31.1-0.4ubuntu3 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1.1~build1 libfreetype6_2.8.1-2ubuntu1 libgcc-7-dev_7.3.0-14ubuntu1 libgcc1_1:8-20180402-1ubuntu1 libgcrypt20_1.8.1-4ubuntu1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libgfortran4_7.3.0-14ubuntu1 libglib2.0-0_2.56.0-4ubuntu1 libgmp10_2:6.1.2+dfsg-2 libgnutls30_3.5.18-1ubuntu1 libgomp1_8-20180402-1ubuntu1 libgpg-error0_1.27-6 libgssapi-krb5-2_1.16-2build1 libgssapi3-heimdal_7.5.0+dfsg-1 libhcrypto4-heimdal_7.5.0+dfsg-1 libheimbase1-heimdal_7.5.0+dfsg-1 libheimntlm0-heimdal_7.5.0+dfsg-1 libhogweed4_3.4-1 libhts2_1.7-2 libhx509-5-heimdal_7.5.0+dfsg-1 libicu60_60.2-3ubuntu3 libidn11_1.33-2.1ubuntu1 libidn2-0_2.0.4-1.1build2 libio-string-perl_1.08-3 libip4tc0_1.6.1-2ubuntu2 libisl15_0.18-4 libisl19_0.19-1 libitm1_8-20180402-1ubuntu1 libjpeg-turbo8_1.5.2-0ubuntu5 libjpeg8_8c-2ubuntu8 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2build1 libkeyutils1_1.5.9-9.2ubuntu1 libkmod2_24-1ubuntu3 libkrb5-26-heimdal_7.5.0+dfsg-1 libkrb5-3_1.16-2build1 libkrb5support0_1.16-2build1 libksba8_1.3.5-2 liblapack3_3.7.1-4ubuntu1 liblcms2-2_2.9-1 libldap-2.4-2_2.4.45+dfsg-1ubuntu1 libldap-common_2.4.45+dfsg-1ubuntu1 liblocale-gettext-perl_1.07-3build2 liblockfile-bin_1.14-1.1 liblockfile1_1.14-1.1 liblsan0_8-20180402-1ubuntu1 liblz4-1_0.0~r131-2ubuntu3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4ubuntu3 libmpc3_1.1.0-1 libmpdec2_2.4.2-1 libmpfr4_3.1.6-1 libmpfr6_4.0.1-1 libncurses5_6.1-1ubuntu1 libncursesw5_6.1-1ubuntu1 libnettle6_3.4-1 libnghttp2-14_1.30.0-1 libnpth0_1.5-3 libnspr4_2:4.18-1ubuntu1 libnss3_2:3.35-2ubuntu2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.6ubuntu1 libpam-modules-bin_1.1.8-3.6ubuntu1 libpam-runtime_1.1.8-3.6ubuntu1 libpam0g_1.1.8-3.6ubuntu1 libpcre3_2:8.39-9 libpcsclite1_1.8.23-1 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-3ubuntu1 libpsl5_0.19.1-5build1 libpython3-stdlib_3.6.5-2 libpython3.6-minimal_3.6.5-3 libpython3.6-stdlib_3.6.5-3 libreadline7_7.0-3 libroken18-heimdal_7.5.0+dfsg-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3ubuntu2 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3ubuntu2 libseccomp2_2.3.1-2.1ubuntu4 libselinux1_2.7-2build2 libsemanage-common_2.7-2build2 libsemanage1_2.7-2build2 libsepol1_2.7-1 libsigsegv2_2.12-1 libslang2_2.3.1a-3ubuntu1 libsmartcols1_2.31.1-0.4ubuntu3 libsqlite3-0_3.22.0-1 libss2_1.44.1-1 libssl-dev_1.1.0g-2ubuntu3 libssl1.0.0_1.0.2n-1ubuntu5 libssl1.1_1.1.0g-2ubuntu3 libstdc++-7-dev_7.3.0-14ubuntu1 libstdc++6_8-20180402-1ubuntu1 libsub-uplevel-perl_0.2800-1 libsystemd0_237-3ubuntu7 libtasn1-6_4.13-2 libtest-deep-perl_1.127-1 libtest-differences-perl_0.64-1 libtest-exception-perl_0.43-1 libtest-most-perl_0.35-1 libtest-warn-perl_0.32-1 libtext-diff-perl_1.45-1 libtimedate-perl_2.3000-2 libtinfo5_6.1-1ubuntu1 libtool_2.4.6-2 libtsan0_8-20180402-1ubuntu1 libubsan0_7.3.0-14ubuntu1 libudev1_237-3ubuntu7 libunistring0_0.9.3-5.2ubuntu1 libunistring2_0.9.9-0ubuntu1 libusb-0.1-4_2:0.1.12-31 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4ubuntu3 libwind0-heimdal_7.5.0+dfsg-1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1 libxi6_2:1.7.9-1 libxml2_2.9.4+dfsg1-6.1ubuntu1 libxrender1_1:0.9.10-1 libxtst6_2:1.2.3-1 linux-libc-dev_4.15.0-15.16 lockfile-progs_0.1.17build1 login_1:4.5-1ubuntu1 lsb-base_9.20170808ubuntu1 m4_1.4.18-1 make_4.1-9.1 man-db_2.8.2-1 mawk_1.3.3-17ubuntu3 mime-support_3.60ubuntu1 mount_2.31.1-0.4ubuntu3 multiarch-support_2.27-0ubuntu3 mummer_3.23+dfsg-3 ncurses-base_6.1-1ubuntu1 ncurses-bin_6.1-1ubuntu1 openjdk-9-jdk-headless_9.0.4+12-4ubuntu2 openjdk-9-jre-headless_9.0.4+12-4ubuntu2 openssl_1.1.0g-2ubuntu3 optipng_0.7.6-1.1 passwd_1:4.5-1ubuntu1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkgbinarymangler_135 po-debconf_1.0.20 policyrcd-script-zg2_0.1-3 procps_2:3.3.12-3ubuntu1 python3_3.6.5-2 python3-decorator_4.1.2-1 python3-distutils_3.6.5-3 python3-lib2to3_3.6.5-3 python3-minimal_3.6.5-2 python3-networkx_1.11-1ubuntu1 python3-nose_1.3.7-3 python3-numpy_1:1.13.3-2ubuntu1 python3-pkg-resources_39.0.1-2 python3-pysam_0.14+ds-2 python3-setuptools_39.0.1-2 python3.6_3.6.5-3 python3.6-minimal_3.6.5-3 readline-common_7.0-3 samtools_1.7-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-iva-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 smalt_0.7.6-7 systemd_237-3ubuntu7 systemd-sysv_237-3ubuntu7 sysv-rc_2.88dsf-59.3ubuntu2 sysvinit-utils_2.88dsf-59.10ubuntu1 tar_1.29b-2 tzdata_2018d-1 ubuntu-keyring_2018.02.28 util-linux_2.31.1-0.4ubuntu3 x11-common_1:7.7+19ubuntu5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-0ubuntu2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: Signature made Thu Apr 5 10:05:56 2018 UTC gpgv: using RSA key D56571B88A8BBAF140BF63D6BD7EAA60778FA6F5 gpgv: issuer "doko@ubuntu.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./iva_1.0.9+ds-4ubuntu1.dsc dpkg-source: info: extracting iva in iva-1.0.9+ds dpkg-source: info: unpacking iva_1.0.9+ds.orig.tar.xz dpkg-source: info: unpacking iva_1.0.9+ds-4ubuntu1.debian.tar.xz dpkg-source: info: applying disable-multithreaded-test.patch Check disc space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf DEB_BUILD_OPTIONS=parallel=4 HOME=/sbuild-nonexistent LANG=C.UTF-8 LC_ALL=C.UTF-8 LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=build-PACKAGEBUILD-14534865 SCHROOT_CHROOT_NAME=build-PACKAGEBUILD-14534865 SCHROOT_COMMAND=env SCHROOT_GID=2501 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=build-PACKAGEBUILD-14534865 SCHROOT_UID=2001 SCHROOT_USER=buildd SHELL=/bin/sh TERM=unknown USER=buildd V=1 dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package iva dpkg-buildpackage: info: source version 1.0.9+ds-4ubuntu1 dpkg-buildpackage: info: source distribution bionic dpkg-source --before-build iva-1.0.9+ds dpkg-buildpackage: info: host architecture ppc64el fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/<>/iva-1.0.9+ds' rm -rf .pybuild rm -f iva/gage/*.class rm -rf /<>/iva-1.0.9+ds/debian/man find . -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/<>/iva-1.0.9+ds' dh_clean -O--buildsystem=pybuild debian/rules build-arch dh build-arch --with python3 --buildsystem=pybuild dh_update_autotools_config -a -O--buildsystem=pybuild dh_autoreconf -a -O--buildsystem=pybuild dh_auto_configure -a -O--buildsystem=pybuild I: pybuild base:217: python3.6 setup.py config Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running config debian/rules override_dh_auto_build make[1]: Entering directory '/<>/iva-1.0.9+ds' chmod a-x /<>/iva-1.0.9+ds/iva/read_trim/adapters.fasta chmod a+x /<>/iva-1.0.9+ds/iva/gage/getCorrectnessStats.sh chmod a+x /<>/iva-1.0.9+ds/iva/ratt/main.ratt.pl chmod a+x scripts/* javac -verbose /<>/iva-1.0.9+ds/iva/gage/*.java [parsing started SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/GetFastaStats.java]] [parsing completed 48ms] [parsing started SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/SizeFasta.java]] [parsing completed 4ms] [parsing started SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/SplitFastaByLetter.java]] [parsing completed 2ms] [parsing started SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/Utils.java]] [parsing completed 11ms] [parsing started SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/getScaffoldStats.java]] [parsing completed 13ms] [loading /modules/java.xml.crypto/module-info.class] [loading /modules/jdk.scripting.nashorn.shell/module-info.class] [loading /modules/jdk.management.agent/module-info.class] [loading /modules/jdk.httpserver/module-info.class] [loading /modules/jdk.security.auth/module-info.class] [loading /modules/jdk.localedata/module-info.class] [loading /modules/jdk.crypto.ec/module-info.class] [loading /modules/jdk.zipfs/module-info.class] [loading /modules/java.datatransfer/module-info.class] [loading /modules/java.management/module-info.class] [loading /modules/jdk.xml.bind/module-info.class] [loading /modules/jdk.jsobject/module-info.class] [loading /modules/jdk.crypto.cryptoki/module-info.class] [loading /modules/jdk.javadoc/module-info.class] [loading /modules/java.scripting/module-info.class] [loading /modules/jdk.jlink/module-info.class] [loading /modules/jdk.internal.ed/module-info.class] [loading /modules/jdk.naming.rmi/module-info.class] [loading /modules/java.naming/module-info.class] [loading /modules/java.xml.bind/module-info.class] [loading /modules/jdk.jdi/module-info.class] [loading /modules/java.rmi/module-info.class] [loading /modules/jdk.jdeps/module-info.class] [loading /modules/jdk.xml.ws/module-info.class] [loading /modules/java.desktop/module-info.class] [loading /modules/jdk.rmic/module-info.class] [loading /modules/jdk.policytool/module-info.class] [loading /modules/java.logging/module-info.class] [loading /modules/jdk.internal.vm.ci/module-info.class] [loading /modules/jdk.xml.dom/module-info.class] [loading /modules/java.smartcardio/module-info.class] [loading /modules/jdk.naming.dns/module-info.class] [loading /modules/jdk.security.jgss/module-info.class] [loading /modules/java.prefs/module-info.class] [loading /modules/java.security.sasl/module-info.class] [loading /modules/jdk.internal.opt/module-info.class] [loading /modules/java.management.rmi/module-info.class] [loading /modules/jdk.management/module-info.class] [loading /modules/jdk.hotspot.agent/module-info.class] [loading /modules/jdk.net/module-info.class] [loading /modules/jdk.internal.le/module-info.class] [loading /modules/java.xml/module-info.class] [loading /modules/jdk.dynalink/module-info.class] [loading /modules/java.security.jgss/module-info.class] [loading /modules/jdk.sctp/module-info.class] [loading /modules/jdk.pack/module-info.class] [loading /modules/java.corba/module-info.class] [loading /modules/java.base/module-info.class] [loading /modules/jdk.jconsole/module-info.class] [loading /modules/jdk.jstatd/module-info.class] [loading /modules/java.sql.rowset/module-info.class] [loading /modules/jdk.editpad/module-info.class] [loading /modules/jdk.jdwp.agent/module-info.class] [loading /modules/jdk.jartool/module-info.class] [loading /modules/jdk.jcmd/module-info.class] [loading /modules/jdk.unsupported/module-info.class] [loading /modules/java.transaction/module-info.class] [loading /modules/java.activation/module-info.class] [loading /modules/jdk.attach/module-info.class] [loading /modules/jdk.internal.jvmstat/module-info.class] [loading /modules/jdk.jshell/module-info.class] [loading /modules/jdk.accessibility/module-info.class] [loading /modules/java.instrument/module-info.class] [loading /modules/java.se.ee/module-info.class] [loading /modules/java.sql/module-info.class] [loading /modules/jdk.compiler/module-info.class] [loading /modules/jdk.scripting.nashorn/module-info.class] [loading /modules/jdk.charsets/module-info.class] [loading /modules/java.xml.ws/module-info.class] [loading /modules/java.se/module-info.class] [loading /modules/java.compiler/module-info.class] [loading /modules/jdk.incubator.httpclient/module-info.class] [loading /modules/java.xml.ws.annotation/module-info.class] [search path for source files: .] [search path for class files: /usr/lib/jvm/java-9-openjdk-ppc64el/lib/modules,.] [search path for source files: .] [search path for class files: /usr/lib/jvm/java-9-openjdk-ppc64el/lib/modules,.] [loading /modules/java.base/java/io/BufferedReader.class] [loading /modules/java.base/java/io/FileInputStream.class] [loading /modules/java.base/java/io/InputStreamReader.class] [loading /modules/java.base/java/text/DecimalFormat.class] [loading /modules/java.base/java/text/NumberFormat.class] [loading /modules/java.base/java/util/ArrayList.class] [loading /modules/java.base/java/util/Arrays.class] [loading /modules/java.base/java/util/HashMap.class] [loading /modules/java.base/java/lang/Object.class] [loading /modules/java.base/java/lang/String.class] [loading /modules/java.base/java/lang/Integer.class] [loading /modules/java.base/java/lang/Exception.class] [loading /modules/java.base/java/lang/StringBuffer.class] [loading /modules/java.management/java/lang/management/ManagementFactory.class] [loading /modules/java.management/java/lang/management/MemoryMXBean.class] [loading /modules/java.base/java/io/File.class] [loading /modules/java.base/java/io/FileReader.class] [loading /modules/java.base/java/lang/Boolean.class] [loading /modules/java.base/java/lang/Enum.class] [loading /modules/java.base/java/lang/Comparable.class] [loading /modules/java.base/java/io/Serializable.class] [loading /modules/java.base/java/util/Collections.class] [loading /modules/java.base/java/lang/Deprecated.class] [loading /modules/java.base/java/lang/annotation/Retention.class] [loading /modules/java.base/java/lang/annotation/RetentionPolicy.class] [loading /modules/java.base/java/lang/annotation/Target.class] [loading /modules/java.base/java/lang/annotation/ElementType.class] [checking GetFastaStats] [loading /modules/java.base/java/lang/AutoCloseable.class] [loading /modules/java.base/java/util/Map.class] [loading /modules/java.base/java/lang/Throwable.class] [loading /modules/java.base/java/lang/CharSequence.class] [loading /modules/java.base/java/io/Reader.class] [loading /modules/java.base/java/lang/Readable.class] [loading /modules/java.base/java/io/Closeable.class] [loading /modules/java.base/java/lang/Number.class] [loading /modules/java.base/java/lang/Cloneable.class] [loading /modules/java.base/java/util/AbstractMap.class] [loading /modules/java.base/java/lang/AbstractStringBuilder.class] [loading /modules/java.base/java/lang/Appendable.class] [loading /modules/java.base/java/lang/Byte.class] [loading /modules/java.base/java/lang/Character.class] [loading /modules/java.base/java/lang/Short.class] [loading /modules/java.base/java/lang/Long.class] [loading /modules/java.base/java/lang/Float.class] [loading /modules/java.base/java/lang/Double.class] [loading /modules/java.base/java/lang/Void.class] [loading /modules/java.base/java/io/FileDescriptor.class] [loading /modules/java.base/java/lang/System.class] [loading /modules/java.base/java/io/PrintStream.class] [loading /modules/java.base/java/io/FilterOutputStream.class] [loading /modules/java.base/java/io/OutputStream.class] [loading /modules/java.base/java/io/Flushable.class] [loading /modules/java.base/java/util/Set.class] [loading /modules/java.base/java/lang/Iterable.class] [loading /modules/java.base/java/util/Collection.class] [loading /modules/java.base/java/lang/Math.class] [loading /modules/java.base/java/util/List.class] [loading /modules/java.base/java/util/RandomAccess.class] [loading /modules/java.base/java/util/AbstractList.class] [loading /modules/java.base/java/util/AbstractCollection.class] [loading /modules/java.base/java/util/Comparator.class] [loading /modules/java.base/java/text/Format.class] [loading /modules/java.base/java/lang/Error.class] [loading /modules/java.base/java/lang/RuntimeException.class] [loading /modules/java.base/java/io/IOException.class] [loading /modules/java.base/java/lang/NumberFormatException.class] [loading /modules/java.base/java/lang/IllegalArgumentException.class] [loading /modules/java.base/java/io/FileNotFoundException.class] [loading /modules/java.base/java/util/Iterator.class] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/GetFastaStats$ContigAt.class]] [loading /modules/java.base/java/lang/invoke/StringConcatFactory.class] [loading /modules/java.base/java/lang/invoke/MethodHandles.class] [loading /modules/java.base/java/lang/invoke/MethodHandles$Lookup.class] [loading /modules/java.base/java/lang/invoke/MethodType.class] [loading /modules/java.base/java/io/InputStream.class] [loading /modules/java.base/java/lang/invoke/CallSite.class] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/GetFastaStats.class]] [checking SizeFasta] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/SizeFasta.class]] [checking SplitFastaByLetter] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/SplitFastaByLetter.class]] [checking Utils] [loading /modules/java.base/java/lang/CloneNotSupportedException.class] [loading /modules/java.base/java/lang/Class.class] [loading /modules/java.base/java/net/URI.class] [loading /modules/java.base/java/lang/Process.class] [loading /modules/java.base/java/lang/Runtime.class] [loading /modules/java.base/java/lang/StringBuilder.class] [loading /modules/java.base/java/lang/reflect/GenericDeclaration.class] [loading /modules/java.base/java/lang/reflect/AnnotatedElement.class] [loading /modules/java.base/java/lang/reflect/Type.class] [loading /modules/java.base/java/lang/AssertionError.class] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/Utils$Pair.class]] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/Utils$Translate.class]] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/Utils$ToProtein.class]] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/Utils.class]] [checking getScaffoldStats] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/getScaffoldStats$Scaffold.class]] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/getScaffoldStats$1.class]] [wrote SimpleFileObject[/<>/iva-1.0.9+ds/iva/gage/getScaffoldStats.class]] [total 837ms] dh_auto_build -- I: pybuild base:217: /usr/bin/python3 setup.py build Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running build running build_py creating /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/seed.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/external_progs.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/read_trim.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/common.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/kcount.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/edge.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/qc_external.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/contig.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/kmers.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/qc.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/mummer.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/contig_trim.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/kraken.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/seed_processor.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/test_data_runner.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/__init__.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/assembly.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/mapping.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/graph.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva copying iva/egg_extract.py -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva creating /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/SplitFastaByLetter.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/GetFastaStats$ContigAt.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getScaffoldStats.java -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/Utils.java -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getScaffoldStats$1.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getScaffoldStats.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/SplitFastaByLetter.java -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/Utils.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/GetFastaStats.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/SizeFasta.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/colsum.pl -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/Utils$Pair.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/GetFastaStats.java -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/Utils$ToProtein.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getCorrectnessStats.sh -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/SizeFasta.java -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getMummerStats.sh -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/getScaffoldStats$Scaffold.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage copying iva/gage/Utils$Translate.class -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage creating /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/ratt.config -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/ratt.config.hiv -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/genbank2embl.pl -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/embl2gff.pl -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/main.ratt.pl -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/start.ratt.sh -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt copying iva/ratt/ratt_correction.pm -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt creating /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/read_trim copying iva/read_trim/adapters.fasta -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/read_trim creating /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/reads_2.fq.gz -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/iva_contigs_with_trimmomatic.fasta -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/iva_contigs_no_trimmomatic.fasta -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/hiv_pcr_primers.fa -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/reference.fasta -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data copying iva/test_run_data/reads_1.fq.gz -> /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data running build_scripts creating build creating build/scripts-3.6 copying and adjusting scripts/iva_qc_make_db -> build/scripts-3.6 copying and adjusting scripts/iva_qc -> build/scripts-3.6 copying and adjusting scripts/iva -> build/scripts-3.6 changing mode of build/scripts-3.6/iva_qc_make_db from 664 to 775 changing mode of build/scripts-3.6/iva_qc from 664 to 775 changing mode of build/scripts-3.6/iva from 664 to 775 make[1]: Leaving directory '/<>/iva-1.0.9+ds' debian/rules override_dh_auto_test make[1]: Entering directory '/<>/iva-1.0.9+ds' python3 setup.py test Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running test running egg_info creating iva.egg-info writing iva.egg-info/PKG-INFO writing dependency_links to iva.egg-info/dependency_links.txt writing requirements to iva.egg-info/requires.txt writing top-level names to iva.egg-info/top_level.txt writing manifest file 'iva.egg-info/SOURCES.txt' reading manifest file 'iva.egg-info/SOURCES.txt' writing manifest file 'iva.egg-info/SOURCES.txt' running build_ext /usr/lib/python3.6/importlib/_bootstrap.py:219: ImportWarning: can't resolve package from __spec__ or __package__, falling back on __name__ and __path__ return f(*args, **kwds) /<>/iva-1.0.9+ds/iva/mapping.py:157: DeprecationWarning: invalid escape sequence \^ s = re.sub('\^.', '', s) /<>/iva-1.0.9+ds/iva/external_progs.py:33: DeprecationWarning: invalid escape sequence \( 'kmc': ('kmc', re.compile('^K-Mer Counter \(KMC\) ver\. (.*) \(.*\)$')), /<>/iva-1.0.9+ds/iva/external_progs.py:34: DeprecationWarning: invalid escape sequence \( 'kmc_dump': ('kmc_dump', re.compile('^KMC dump ver. (.*) \(.*\)$')), /<>/iva-1.0.9+ds/iva/external_progs.py:37: DeprecationWarning: invalid escape sequence \( 'nucmer': ('nucmer --version', re.compile('^NUCmer \(NUCleotide MUMmer\) version (.*)$')), /<>/iva-1.0.9+ds/iva/external_progs.py:38: DeprecationWarning: invalid escape sequence \( 'R': ('R --version', re.compile('^R version (.*) \(.*\) --')), /<>/iva-1.0.9+ds/iva/external_progs.py:40: DeprecationWarning: invalid escape sequence \d 'samtools': ('samtools', re.compile('(\d+\.\d+[\.\d]*)')), /<>/iva-1.0.9+ds/iva/kraken.py:360: DeprecationWarning: invalid escape sequence \. self._genbank2embl(fname, re.sub('\.gbk$', '', fname) + '.embl') /<>/iva-1.0.9+ds/iva/kraken.py:415: DeprecationWarning: invalid escape sequence \W return re.sub('\W', '_', s).strip('_') test_add_new_seed_contig (assembly_test.TestAssembly) Test add_new_seed_contig ... ok test_contig_contained_in_nucmer_hits (assembly_test.TestAssembly) Test _contig_contained_in_nucmer_hits ... ok test_contig_names_size_order (assembly_test.TestAssembly) Test _contig_names_size_order ... ok test_contig_worth_extending (assembly_test.TestAssembly) Test _contig_worth_extending ... ok test_coords_to_new_contig (assembly_test.TestAssembly) Test _coords_to_new_contig ... ok test_extend_contigs_with_bam (assembly_test.TestAssembly) test _extend_contigs_with_bam ... ok test_get_contig_order_by_orfs (assembly_test.TestAssembly) Test get_contig_order_by_orfs ... ok test_get_ref_length (assembly_test.TestAssembly) Test _get_ref_length ... ok test_get_ref_length_sam_pair (assembly_test.TestAssembly) Test _get_ref_length_sam_pair ... ok test_get_unmapped_pairs (assembly_test.TestAssembly) Test _get_unmapped_pairs ... ok test_good_intervals_from_strand_coverage (assembly_test.TestAssembly) Test good_intervals_from_strand_coverage ... ok test_init_and_write (assembly_test.TestAssembly) test assembly initialise and write to file ... ok test_map_reads (assembly_test.TestAssembly) test _map_reads ... ok test_merge_overlapping_contigs (assembly_test.TestAssembly) Test _merge_overlapping_contigs ... ok test_read_pair_extend (assembly_test.TestAssembly) Test read_pair_extend ... ok test_remove_contained_contigs (assembly_test.TestAssembly) Test _remove_contained_contigs ... ok test_remove_contig (assembly_test.TestAssembly) Test _remove_contig ... ok test_remove_contig_from_nucmer_hits (assembly_test.TestAssembly) Test _remove_contig_from_nucmer_hits ... ok test_subcontigs_from_strand_bias (assembly_test.TestAssembly) Test _subcontigs_from_strand_bias ... ok test_trim_contig_for_strand_bias (assembly_test.TestAssembly) Test _trim_contig_for_strand_bias ... ok test_trim_contigs (assembly_test.TestAssembly) Test trim_contigs ... ok test_trim_strand_biased_ends (assembly_test.TestAssembly) Test _trim_strand_biased_ends ... ok test_worth_extending (assembly_test.TestAssembly) Test worth_extending ... ok test_add_left_kmer (contig_test.TestContig) Test add_left_kmer ... ok test_add_right_kmer (contig_test.TestContig) Test add_right_kmer ... ok test_extend (contig_test.TestContig) Test extend ... ok test_init (contig_test.TestContig) Test init ... ok test_len (contig_test.TestContig) Test len ... ok test_coverage_to_trimmed_coords (contig_trim_test.TestContigTrim) Test _coverage_to_trimmed_coords ... ok test_trim_ends (contig_trim_test.TestContigTrim) Test _trim_ends ... ok test_trim_primers_and_adapters (contig_trim_test.TestContigTrim) Test trim_primers_and_adapters ... ok test_change_hit_coords_with_intersection (edge_test.TestEdge) test test_change_hit_coords_with_intersection ... ok test_make_contig_first (edge_test.TestEdge) test make_contig_first ... ok test_make_contig_forwards (edge_test.TestEdge) test make_contig_forwards ... ok test_merge_into (edge_test.TestEdge) test merge_into ... ok test_open_end (edge_test.TestEdge) test open_end ... ok test_reverse (edge_test.TestEdge) test reverse ... ok test_copy_dir (egg_extract_test.TestEggExtract) test copy_dir ... ok test_copy_dir_unzipped (egg_extract_test.TestEggExtract) test copy_dir_unzipped ... ok test_copy_dir_zipped (egg_extract_test.TestEggExtract) test copy_dir_zipped ... ok test_copy_file (egg_extract_test.TestEggExtract) test copy_file ... ok test_copy_file_unzipped (egg_extract_test.TestEggExtract) test _copy_file_unzipped ... ok test_copy_file_zipped (egg_extract_test.TestEggExtract) test _copy_file_zipped ... ok test_init_and_write (egg_extract_test.TestEggExtract) test __init__ ... ok test_blastn_version (external_progs_test.TestExternalProgs) Test blastn version ... ok test_delta_filter_in_path (external_progs_test.TestExternalProgs) Test delta-filter in path ... ok test_kmc_dump_in_path (external_progs_test.TestExternalProgs) Test kmc_dump in path ... ok test_kmc_dump_version (external_progs_test.TestExternalProgs) Test kmc_dump version ... ok test_kmc_in_path (external_progs_test.TestExternalProgs) Test kmc in path ... ok test_kmc_version (external_progs_test.TestExternalProgs) Test kmc version ... ok test_makeblastdb_version (external_progs_test.TestExternalProgs) Test makeblastdb version ... ok test_nucmer_in_path (external_progs_test.TestExternalProgs) Test nucmer in path ... ok test_nucmer_version (external_progs_test.TestExternalProgs) Test nucmer version ... ok test_r_version (external_progs_test.TestExternalProgs) Test R versions ... ok test_samtools_in_path (external_progs_test.TestExternalProgs) Test samtools in path ... ok test_samtools_original_version (external_progs_test.TestExternalProgs) Test samtools original version ... ok test_samtools_version (external_progs_test.TestExternalProgs) Test samtools version ... ok test_show_coords_in_path (external_progs_test.TestExternalProgs) Test show-coords in path ... ok test_smalt_in_path (external_progs_test.TestExternalProgs) Test smalt in path ... ok test_smalt_version (external_progs_test.TestExternalProgs) Test smalt version ... ok test_add_and_get_edges (graph_test.TestGraph) test adding and getting edges ... ok test_connected_components (graph_test.TestGraph) test connected_components ... ok test_degree (graph_test.TestGraph) test degree ... ok test_edges_are_consistent (graph_test.TestGraph) test edges_are_consistent ... ok test_find_simple_path (graph_test.TestGraph) test find_simple_path ... ok test_get_nodes (graph_test.TestGraph) test get_nodes ... ok test_merged_coords_from_simple_nonredundant_path (graph_test.TestGraph) test merged_coords_from_simple_nonredundant_path ... ok test_node_to_coords (graph_test.TestGraph) test _node_to_coords ... ok test_remove_middle_node (graph_test.TestGraph) test remove_middle_node ... ok test_remove_node (graph_test.TestGraph) test remove_node ... ok test_remove_redundant_nodes_from_simple_path (graph_test.TestGraph) test remove_redundant_nodes_from_simple_path ... ok test_simple_path_is_consistent (graph_test.TestGraph) test simple_path_is_consistent ... ok test_counts_file_to_fasta (kcount_test.TestKcount) Test _counts_file_to_fasta ... ok test_get_most_common_kmers (kcount_test.TestKcount) Test get_most_common_kmers ... ok test_head_fastaq_fa (kcount_test.TestKcount) Test head_fastaq with FASTA input ... ok test_head_fastaq_fq (kcount_test.TestKcount) Test head_fastaq with FASTQ input ... ok test_kmc_to_kmer_counts (kcount_test.TestKcount) Test _kmc_to_kmer_counts ... ok test_median (kcount_test.TestKcount) Test _median() ... ok test_run_kmc (kcount_test.TestKcount) Test test_run_kmc ... ok test_run_kmc_two_threads (kcount_test.TestKcount) Test test_run_kmc with two threads ... ok test_append (kmers_test.TestKmers) Test append ... ok test_commonest_kmers (kmers_test.TestKmers) ... ok test_extend (kmers_test.TestKmers) Test extend ... ok test_extension (kmers_test.TestKmers) Test extension ... ok test_init (kmers_test.TestKmers) Test __init__ ... ok test_kmer_dict (kmers_test.TestKmers) Test kmer_dict ... ok test_append_to_file (kraken_test.TestKraken) test _append_to_file ... ok test_count_cds_from_embl (kraken_test.TestKraken) test count_cds_from_embl ... ok test_genbank_to_taxon_and_gi (kraken_test.TestKraken) test _genbank_to_taxon_and_gi ... ok test_get_most_common_species_dir (kraken_test.TestKraken) Test get_most_common_species ... ok test_get_parent_taxons (kraken_test.TestKraken) test _get_parent_taxons ... ok test_load_extra_ref_info (kraken_test.TestKraken) test _load_extra_ref_info ... ok test_replace_fasta_header (kraken_test.TestKraken) test _replace_fasta_header ... ok test_species_to_dir (kraken_test.TestKraken) test species_to_dir ... ok test_bam_file_to_fasta_pair_files (mapping_test.TestMapping) Test bam_file_to_fasta_pair_files ... ok test_bam_file_to_fasta_pair_files_region (mapping_test.TestMapping) Test bam_file_to_fasta_pair_files with a region ... ok test_bam_file_to_region_fasta (mapping_test.TestMapping) Test bam_file_to_region_fasta ... ok test_bam_to_fasta (mapping_test.TestMapping) Test bam_to_fasta ... ok test_can_extend (mapping_test.TestMapping) Test can_extend ... ok test_consensus_base (mapping_test.TestMapping) Test consensus_base ... ok test_consensus_base_both_strands (mapping_test.TestMapping) Test consensus_base_both_strands ... ok test_find_incorrect_ref_bases (mapping_test.TestMapping) Test find_incorrect_ref_bases ... ok test_get_bam_region_coverage_fwd (mapping_test.TestMapping) Test get_bam_region_coverage forward strand ... ok test_get_bam_region_coverage_fwd_And_rev (mapping_test.TestMapping) Test get_bam_region_coverage both strands ... ok test_get_bam_region_coverage_rev (mapping_test.TestMapping) Test get_bam_region_coverage reverse strand ... ok test_get_pair_type (mapping_test.TestMapping) Test get_pair_type ... ok test_get_ref_name (mapping_test.TestMapping) Test get_ref_name ... ok test_map_reads (mapping_test.TestMapping) Test mapping reads ... ok test_map_reads_and_sort (mapping_test.TestMapping) Test mapping reads and sort BAM ... ok test_map_reads_wth_flag (mapping_test.TestMapping) Test map_reads with required flag ... ok test_remove_indels (mapping_test.TestMapping) Test _remove_indels ... ok test_sam_to_fasta (mapping_test.TestMapping) Test sam_to_fasta ... ok test_smalt_in_path (mapping_test.TestMapping) Test that samtools is in the user's path ... ok test_soft_clipped (mapping_test.TestMapping) Test soft_clipped ... ok test_strip_mpileup_coverage_string (mapping_test.TestMapping) Test strip_mpileup_coverage_string ... ok test_total_ref_length_from_bam (mapping_test.TestMapping) Test _total_ref_length_from_bam ... ok test_file_read (mummer_test.TestMummer) test file_read ... ok test_is_at_ends (mummer_test.TestMummer) Test is_at_ends ... ok test_is_self_hit (mummer_test.TestMummer) Test is_self_hit ... ok test_on_same_strand (mummer_test.TestMummer) test on_same_strand ... ok test_qry_coords (mummer_test.TestMummer) Test qry_coords ... ok test_ref_coords (mummer_test.TestMummer) Test ref_coords ... ok test_run_nucmer (mummer_test.TestMummer) test run_nucmer ... ok test_sort (mummer_test.TestMummer) test sort ... ok test_swap (mummer_test.TestMummer) test swap ... ok test_to_graph_edge (mummer_test.TestMummer) Test to_graph_edge ... ok test_run_gage (qc_external_test.TestQcExternal) test run_gage ... ok test_run_ratt (qc_external_test.TestQcExternal) test run_ratt ... ok test_calculate_cds_assembly_stats (qc_test.TestQc) test _calculate_cds_assembly_stats ... ok test_calculate_contig_placement (qc_test.TestQc) test calculate_contig_placement ... ok test_calculate_ref_positions_covered_by_contigs (qc_test.TestQc) test _calculate_ref_positions_covered_by_contigs ... ok test_calculate_ref_read_coverage (qc_test.TestQc) test _calculate_ref_read_coverage ... ok test_calculate_ref_read_region_coverage (qc_test.TestQc) test _calculate_ref_read_region_coverage ... ok test_calculate_refseq_assembly_stats (qc_test.TestQc) test _calculate_refseq_assembly_stats ... ok test_calculate_should_have_assembled (qc_test.TestQc) test _calculate_should_have_assembled ... ok test_contig_placement_in_reference (qc_test.TestQc) test _contig_placement_in_reference ... ok test_contigs_and_bases_that_hit_ref (qc_test.TestQc) test _contigs_and_bases_that_hit_ref ... ok test_cov_to_R_string (qc_test.TestQc) test _cov_to_R_string ... ok test_coverage_list_to_low_cov_intervals (qc_test.TestQc) test _coverage_list_to_low_cov_intervals ... ok test_get_R_plot_contig_order_from_contig_placement (qc_test.TestQc) test _get_R_plot_contig_order_from_contig_placement ... ok test_get_contig_hits_to_reference (qc_test.TestQc) test _get_contig_hits_to_reference ... ok test_get_overlapping_qry_hits (qc_test.TestQc) test _get_overlapping_qry_hits ... ok test_get_ref_cds_from_gff (qc_test.TestQc) test _get_ref_cds_from_gff ... ok test_get_unique_and_repetitive_from_contig_hits (qc_test.TestQc) test _get_unique_and_repetitive_from_contig_hits ... ok test_gff_and_fasta_to_cds (qc_test.TestQc) test _gff_and_fasta_to_cds ... ok test_has_orf (qc_test.TestQc) test _has_orf ... ok test_hash_nucmer_hits_by_ref (qc_test.TestQc) test _hash_nucmer_hits_by_ref ... ok test_ids_in_order_from_fai (qc_test.TestQc) test _ids_in_order_from_fai ... ok test_invert_list (qc_test.TestQc) test _invert_list ... ok test_map_cds_to_assembly (qc_test.TestQc) test _map_cds_to_assembly ... ok test_mummer_coords_file_to_dict (qc_test.TestQc) test _mummer_coords_file_to_dict ... ok test_write_cds_seqs (qc_test.TestQc) test _write_cds_seqs ... ok test_write_fasta_contigs_hit_ref (qc_test.TestQc) test _write_fasta_contigs_hit_ref ... ok test_write_fasta_contigs_not_hit_ref (qc_test.TestQc) test _write_fasta_contigs_not_hit_ref ... ok test_write_ref_coverage_to_files_for_R (qc_test.TestQc) test _write_ref_coverage_to_files_for_R ... ok test_run_trimmomatic (read_trim_test.TestReadTrim) Test run_trimmomatic ... ok test_extend (seed_test.TestSeed) Test extend ... ok test_extend_with_reads_as_single_end (seed_test.TestSeed) Test _extend_with_reads_as_single_end ... ok test_extension_from_read (seed_test.TestSeed) Test _test_extension_from_read ... ok test_extensions_from_reads_file (seed_test.TestSeed) Test _extensions_from_reads_file ... ok test_init (seed_test.TestSeed) test init ... ok test_kmc_in_path (seed_test.TestSeed) Test that kmc is in the user's path ... ok test_len (seed_test.TestSeed) Test len ... ok test_write_fasta (seed_test.TestSeed) Test write_fasta ... ok ---------------------------------------------------------------------- Ran 164 tests in 6.107s OK make[1]: Leaving directory '/<>/iva-1.0.9+ds' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --with python3 --buildsystem=pybuild dh_testroot -a -O--buildsystem=pybuild dh_prep -a -O--buildsystem=pybuild dh_auto_install -a -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python3 setup.py install --root /<>/iva-1.0.9+ds/debian/iva Checking dependencies found in path: OK kmc OK kmc_dump OK nucmer OK delta-filter OK show-coords OK samtools OK smalt running install running build running build_py running build_scripts running install_lib creating /<>/iva-1.0.9+ds/debian/iva/usr creating /<>/iva-1.0.9+ds/debian/iva/usr/lib creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6 creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/seed.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/external_progs.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/read_trim.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/ratt.config -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/ratt.config.hiv -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/genbank2embl.pl -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/embl2gff.pl -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/main.ratt.pl -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/start.ratt.sh -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/ratt/ratt_correction.pm -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/ratt copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/common.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/kcount.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/edge.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/qc_external.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/contig.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/kmers.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/SplitFastaByLetter.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/GetFastaStats$ContigAt.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getScaffoldStats.java -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/Utils.java -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getScaffoldStats$1.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getScaffoldStats.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/SplitFastaByLetter.java -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/Utils.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/GetFastaStats.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/SizeFasta.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/colsum.pl -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/Utils$Pair.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/GetFastaStats.java -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/Utils$ToProtein.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getCorrectnessStats.sh -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/SizeFasta.java -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getMummerStats.sh -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/getScaffoldStats$Scaffold.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/gage/Utils$Translate.class -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/gage creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/reads_2.fq.gz -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/iva_contigs_with_trimmomatic.fasta -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/iva_contigs_no_trimmomatic.fasta -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/hiv_pcr_primers.fa -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/reference.fasta -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_run_data/reads_1.fq.gz -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_run_data copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/qc.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/mummer.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/contig_trim.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva creating /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/read_trim copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/read_trim/adapters.fasta -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/read_trim copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/kraken.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/seed_processor.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/test_data_runner.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/__init__.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/assembly.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/mapping.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/graph.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva copying /<>/iva-1.0.9+ds/.pybuild/cpython3_3.6_iva/build/iva/egg_extract.py -> /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/seed.py to seed.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/external_progs.py to external_progs.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/read_trim.py to read_trim.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/common.py to common.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/kcount.py to kcount.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/edge.py to edge.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/qc_external.py to qc_external.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/contig.py to contig.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/kmers.py to kmers.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/qc.py to qc.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/mummer.py to mummer.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/contig_trim.py to contig_trim.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/kraken.py to kraken.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/seed_processor.py to seed_processor.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/test_data_runner.py to test_data_runner.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/__init__.py to __init__.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/assembly.py to assembly.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/mapping.py to mapping.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/graph.py to graph.cpython-36.pyc byte-compiling /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva/egg_extract.py to egg_extract.cpython-36.pyc running install_egg_info running egg_info writing iva.egg-info/PKG-INFO writing dependency_links to iva.egg-info/dependency_links.txt writing requirements to iva.egg-info/requires.txt writing top-level names to iva.egg-info/top_level.txt reading manifest file 'iva.egg-info/SOURCES.txt' writing manifest file 'iva.egg-info/SOURCES.txt' Copying iva.egg-info to /<>/iva-1.0.9+ds/debian/iva/usr/lib/python3.6/dist-packages/iva-1.0.9.egg-info Skipping SOURCES.txt running install_scripts creating /<>/iva-1.0.9+ds/debian/iva/usr/bin copying build/scripts-3.6/iva_qc_make_db -> /<>/iva-1.0.9+ds/debian/iva/usr/bin copying build/scripts-3.6/iva_qc -> /<>/iva-1.0.9+ds/debian/iva/usr/bin copying build/scripts-3.6/iva -> /<>/iva-1.0.9+ds/debian/iva/usr/bin changing mode of /<>/iva-1.0.9+ds/debian/iva/usr/bin/iva_qc_make_db to 775 changing mode of /<>/iva-1.0.9+ds/debian/iva/usr/bin/iva_qc to 775 changing mode of /<>/iva-1.0.9+ds/debian/iva/usr/bin/iva to 775 dh_installdocs -a -O--buildsystem=pybuild dh_installchangelogs -a -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/<>/iva-1.0.9+ds' mkdir -p /<>/iva-1.0.9+ds/debian/man PYTHONPATH=. help2man -N -o /<>/iva-1.0.9+ds/debian/man/iva.1 \ -n 'iterative virus assembler' \ --no-discard-stderr ./scripts/iva PYTHONPATH=. help2man -N -o /<>/iva-1.0.9+ds/debian/man/iva_qc.1 \ -n 'compare an assembly to a reference' \ --no-discard-stderr ./scripts/iva_qc PYTHONPATH=. help2man -N -o /<>/iva-1.0.9+ds/debian/man/iva_qc_make_db.1 \ -n 'make a database as input for iva_qc' \ --no-discard-stderr ./scripts/iva_qc_make_db dh_installman -- make[1]: Leaving directory '/<>/iva-1.0.9+ds' dh_python3 -a -O--buildsystem=pybuild dh_perl -a -O--buildsystem=pybuild dh_link -a -O--buildsystem=pybuild dh_strip_nondeterminism -a -O--buildsystem=pybuild dh_compress -a -O--buildsystem=pybuild dh_fixperms -a -O--buildsystem=pybuild dh_missing -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -a -O--buildsystem=pybuild dh_gencontrol -a -O--buildsystem=pybuild dpkg-gencontrol: warning: package iva: unused substitution variable ${perl:Depends} dh_md5sums -a -O--buildsystem=pybuild dh_builddeb -a -O--buildsystem=pybuild INFO: pkgstriptranslations version 135 pkgstriptranslations: processing iva (in debian/iva); do_strip: , oemstrip: pkgmaintainermangler: Maintainer field overridden to "Ubuntu Developers " pkgstripfiles: processing control file: debian/iva/DEBIAN/control, package iva, directory debian/iva pkgstripfiles: Running PNG optimization (using 4 cpus) for package iva ... pkgstripfiles: No PNG files. dpkg-deb: building package 'iva' in '../iva_1.0.9+ds-4ubuntu1_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any -mLaunchpad Build Daemon >../iva_1.0.9+ds-4ubuntu1_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build iva-1.0.9+ds dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 20180405-1036 Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ iva_1.0.9+ds-4ubuntu1_ppc64el.changes: -------------------------------------- Format: 1.8 Date: Thu, 05 Apr 2018 12:04:46 +0200 Source: iva Binary: iva Architecture: ppc64el Version: 1.0.9+ds-4ubuntu1 Distribution: bionic-proposed Urgency: medium Maintainer: Launchpad Build Daemon Changed-By: Matthias Klose Description: iva - iterative virus sequence assembler Changes: iva (1.0.9+ds-4ubuntu1) bionic; urgency=medium . * Drop the runtime dependency on python3-distutils. Checksums-Sha1: 625f455a4dc2d71bc3a8d4fc832629b34c2a0298 8444 iva_1.0.9+ds-4ubuntu1_ppc64el.buildinfo 94c17b7cc0fc0d744a887d70d2057fed46757b51 8578092 iva_1.0.9+ds-4ubuntu1_ppc64el.deb Checksums-Sha256: 77c7743eb46818d66579227848dc49ac4114a903d2f2b8c0fccaa37c1e5a0ff6 8444 iva_1.0.9+ds-4ubuntu1_ppc64el.buildinfo e31de5c93a58f5abeabf57a4d2c06ec6491de599ca7cff2c08109db09d525fb3 8578092 iva_1.0.9+ds-4ubuntu1_ppc64el.deb Files: b380166148ac3fd88b2a7e1c3534c346 8444 science optional iva_1.0.9+ds-4ubuntu1_ppc64el.buildinfo 0e12f21ea0e2fb197a6133d9eb63b721 8578092 science optional iva_1.0.9+ds-4ubuntu1_ppc64el.deb +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ iva_1.0.9+ds-4ubuntu1_ppc64el.deb --------------------------------- new debian package, version 2.0. size 8578092 bytes: control archive=3068 bytes. 1032 bytes, 22 lines control 5575 bytes, 65 lines md5sums 162 bytes, 9 lines * postinst #!/bin/sh 381 bytes, 12 lines * prerm #!/bin/sh Package: iva Version: 1.0.9+ds-4ubuntu1 Architecture: ppc64el Maintainer: Ubuntu Developers Original-Maintainer: Debian Med Packaging Team Installed-Size: 8766 Depends: fastaq (>= 1.6), python3-networkx, python3-pysam, python3:any (>= 3.3.2-2~), kmc, mummer, smalt, samtools, python3-numpy, default-jre-headless Recommends: r-base-core, bioperl, trimmomatic Section: science Priority: optional Homepage: https://github.com/sanger-pathogens/iva Description: iterative virus sequence assembler IVA is a de novo assembler designed to assemble virus genomes that have no repeat sequences, using Illumina read pairs sequenced from mixed populations at extremely high depth. . IVA's main algorithm works by iteratively extending contigs using aligned read pairs. Its input can be just read pairs, or additionally you can provide an existing set of contigs to be extended. Alternatively, it can take reads together with a reference sequence. drwxr-xr-x root/root 0 2018-04-05 10:04 ./ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/bin/ -rwxr-xr-x root/root 17240 2018-04-05 10:04 ./usr/bin/iva -rwxr-xr-x root/root 6228 2018-04-05 10:04 ./usr/bin/iva_qc -rwxr-xr-x root/root 2406 2018-04-05 10:04 ./usr/bin/iva_qc_make_db drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva-1.0.9.egg-info/ -rw-r--r-- root/root 483 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva-1.0.9.egg-info/PKG-INFO -rw-r--r-- root/root 1 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva-1.0.9.egg-info/dependency_links.txt -rw-r--r-- root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva-1.0.9.egg-info/requires.txt -rw-r--r-- root/root 4 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva-1.0.9.egg-info/top_level.txt drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva/ -rw-r--r-- root/root 1033 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/__init__.py -rw-r--r-- root/root 28055 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/assembly.py -rw-r--r-- root/root 1856 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/common.py -rw-r--r-- root/root 1960 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/contig.py -rw-r--r-- root/root 4391 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/contig_trim.py -rw-r--r-- root/root 4903 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/edge.py -rw-r--r-- root/root 3077 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/egg_extract.py -rw-r--r-- root/root 4110 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/external_progs.py drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva/gage/ -rw-r--r-- 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10:57 ./usr/lib/python3/dist-packages/iva/test_data_runner.py drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva/test_run_data/ -rw-r--r-- root/root 672 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/test_run_data/hiv_pcr_primers.fa -rw-r--r-- root/root 9981 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_no_trimmomatic.fasta -rw-r--r-- root/root 9200 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/test_run_data/iva_contigs_with_trimmomatic.fasta -rw-r--r-- root/root 3813239 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva/test_run_data/reads_1.fq.gz -rw-r--r-- root/root 4661713 2018-04-05 10:04 ./usr/lib/python3/dist-packages/iva/test_run_data/reads_2.fq.gz -rw-r--r-- root/root 9217 2018-01-25 10:57 ./usr/lib/python3/dist-packages/iva/test_run_data/reference.fasta drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/share/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/share/doc/iva/ -rw-r--r-- root/root 842 2018-04-05 10:04 ./usr/share/doc/iva/changelog.Debian.gz -rw-r--r-- root/root 1488 2018-03-26 15:01 ./usr/share/doc/iva/copyright drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/share/man/ drwxr-xr-x root/root 0 2018-04-05 10:04 ./usr/share/man/man1/ -rw-r--r-- root/root 2253 2018-04-05 10:04 ./usr/share/man/man1/iva.1.gz -rw-r--r-- root/root 1280 2018-04-05 10:04 ./usr/share/man/man1/iva_qc.1.gz -rw-r--r-- root/root 642 2018-04-05 10:04 ./usr/share/man/man1/iva_qc_make_db.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not removing build depends: as requested +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: ppc64el Build-Space: 37296 Build-Time: 23 Distribution: bionic-proposed Host Architecture: ppc64el Install-Time: 36 Job: iva_1.0.9+ds-4ubuntu1.dsc Machine Architecture: ppc64el Package: iva Package-Time: 59 Source-Version: 1.0.9+ds-4ubuntu1 Space: 37296 Status: successful Version: 1.0.9+ds-4ubuntu1 -------------------------------------------------------------------------------- Finished at 20180405-1036 Build needed 00:00:59, 37296k disc space RUN: /usr/share/launchpad-buildd/slavebin/in-target scan-for-processes --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 Scanning for processes to kill in build PACKAGEBUILD-14534865 RUN: /usr/share/launchpad-buildd/slavebin/in-target umount-chroot --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 Stopping target for build PACKAGEBUILD-14534865 RUN: /usr/share/launchpad-buildd/slavebin/in-target remove-build --backend=chroot --series=bionic --arch=ppc64el PACKAGEBUILD-14534865 Removing build PACKAGEBUILD-14534865