ivar 1.2.2+dfsg-3 source package in Ubuntu


ivar (1.2.2+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Add reference data for autopkgtests
  * Add recommended package as per docs
  * Add autopkgtests
  * Install docs and examples

 -- Pranav Ballaney <email address hidden>  Tue, 16 Jun 2020 21:55:42 +0530

Upload details

Uploaded by:
Debian Med on 2020-06-16
Uploaded to:
Original maintainer:
Debian Med
any all
Medium Urgency

See full publishing history Publishing

Series Pocket Published Component Section
Hirsute release 1 hour ago universe misc
Groovy release on 2020-06-17 universe misc


File Size SHA-256 Checksum
ivar_1.2.2+dfsg-3.dsc 2.0 KiB 62fc0b8ac12923100a533c47f0096b1389ec1cdb0bae83c6d8c419b58c8c3366
ivar_1.2.2+dfsg.orig.tar.xz 606.7 KiB 22ba839a91ed94fb8fc489973289ce5703a0766f0e3079aadf2b4a3b5ee18249
ivar_1.2.2+dfsg-3.debian.tar.xz 41.8 KiB 3fb1baccd0bccac179047ec1753ce670f0f185b26bc5b468e4a5f33c609ea55b

Available diffs

No changes file available.

Binary packages built by this source

ivar: No summary available for ivar in ubuntu hirsute.

No description available for ivar in ubuntu hirsute.

ivar-dbgsym: debug symbols for ivar
ivar-doc: functions broadly useful for viral amplicon-based sequencing (documentation)

 iVar is a computational package that contains functions broadly useful
 for viral amplicon-based sequencing. Additional tools for metagenomic
 sequencing are actively being incorporated into iVar. While each of
 these functions can be accomplished using existing tools, iVar contains
 an intersection of functionality from multiple tools that are required
 to call iSNVs and consensus sequences from viral sequencing data across
 multiple replicates. iVar provided the following functions:
  1. trimming of primers and low-quality bases,
  2. consensus calling,
  3. variant calling - both iSNVs and insertions/deletions, and
  4. identifying mismatches to primer sequences and excluding the
     corresponding reads from alignment files.
 This package contains the html documentation for ivar.